#*Hierarchical modeling and analysis of embedded systems.
#@Rajeev Alur,Thao Dang,Joel M. Esposito,Yerang Hur,Franjo Ivancic,Vijay Kumar,Insup Lee,Pradyumna Mishra,George J. Pappas,Oleg Sokolsky
#t2003
#cProceedings of the IEEE
#index1037489
#% 
#!
  
#*The synchronous languages 12 years later.
#@Albert Benveniste,Paul Caspi,Stephen A. Edwards,Nicolas Halbwachs,Paul Le Guernic,Robert de Simone
#t2003
#cProceedings of the IEEE
#index1037490
#% 
#!
  
#*Scanning our past from the Netherlands: Bernard Tellegen and the pentode valve.
#@I. J. Blanken
#t2003
#cProceedings of the IEEE
#index1037491
#% 
#!
  
#*Milestones on the road to higher resolution, quantitative, and functional ultrasonic imaging.
#@S. L. Bridal,J.-M. Correas,A. Saied,P. Laugier
#t2003
#cProceedings of the IEEE
#index1037492
#% 
#!
  
#*Taming heterogeneity - the Ptolemy approach.
#@Johan Eker,Jörn W. Janneck,Edward A. Lee,Jie Liu,Xiaojun Liu,J. Ludvig,Stephen Neuendorffer,S. Sachs,Yuhong Xiong
#t2003
#cProceedings of the IEEE
#index1037493
#% 
#!
  
#*Evolution of the Internet QoS and support for soft real-time applications.
#@Mohamed A. El-Gendy,Abhijit Bose,Kang G. Shin
#t2003
#cProceedings of the IEEE
#index1037494
#% 
#!
  
#*The Technical and Legal Dangers of Code-Based Fair Use Enforcement.
#@J. S. Erickson,Deirdre K. Mulligan
#t2004
#cProceedings of the IEEE
#index1037495
#% 
#!
  
#*Imaging elastic properties of biological tissues by low-frequency harmonic vibration.
#@Mostafa Fatemi,Armando Manduca,James F. Greenleaf
#t2003
#cProceedings of the IEEE
#index1037496
#% 
#!
  
#*Fast volume scanning approaches by X-ray-computed tomography.
#@Theobald O. J. Fuchs,Marc Kachelriess,Willi A. Kalender
#t2003
#cProceedings of the IEEE
#index1037497
#% 
#!
  
#*Multiparadigm scheduling for distributed real-time embedded computing.
#@Christopher D. Gill,Ron Cytron,Douglas C. Schmidt
#t2003
#cProceedings of the IEEE
#index1037498
#% 
#!
  
#*The influence of processor architecture on the design and the results of WCET tools.
#@Reinhold Heckmann,Marc Langenbach,Stephan Thesing,Reinhard Wilhelm
#t2003
#cProceedings of the IEEE
#index1037499
#% 
#!
  
#*Giotto: a time-triggered language for embedded programming.
#@Thomas A. Henzinger,Benjamin Horowitz,Christoph M. Kirsch
#t2003
#cProceedings of the IEEE
#index1037500
#% 
#!
  
#*Discrete tomography in medical imaging.
#@Gabor T. Herman,Attila Kuba
#t2003
#cProceedings of the IEEE
#index1037501
#% 
#!
  
#*Platform-based embedded software design and system integration for autonomous vehicles.
#@Benjamin Horowitz,Judith Liebman,Cedric Ma,Tak-John Koo,Alberto L. Sangiovanni-Vincentelli,Shankar Sastry
#t2003
#cProceedings of the IEEE
#index1037502
#% 
#!
  
#*Geodesic morphometry with applications to 3-D morpho-functional anatomy.
#@Jean-José Jacq,Christian Roux
#t2003
#cProceedings of the IEEE
#index1037503
#% 
#!
  
#*Music2Share - Copyright-Compliant Music Sharing in P2P Systems.
#@Ton Kalker,Dick H. J. Epema,Pieter H. Hartel,Reginald L. Lagendijk,Maarten van Steen
#t2004
#cProceedings of the IEEE
#index1037504
#% 
#!
  
#*Model-integrated development of embedded software.
#@Gabor Karsai,Janos Sztipanovits,Ákos Lédeczi,Ted Bapty
#t2003
#cProceedings of the IEEE
#index1037505
#% 
#!
  
#*The Long March to Interoperable Digital Rights Management.
#@R. H. Koenen,Jack Lacy,M. MacKay,S. Mitchell
#t2004
#cProceedings of the IEEE
#index1037506
#% 
#!
  
#*The time-triggered architecture.
#@Hermann Kopetz,Günther Bauer
#t2003
#cProceedings of the IEEE
#index1037507
#% 
#!
  
#*Scanning the issue - special issue on real-time systems.
#@C. Mani Krishna,Yann-Hang Lee
#t2003
#cProceedings of the IEEE
#index1037508
#% 
#!
  
#*Video Fingerprinting and Encryption Principles for Digital Rights Management.
#@Deepa Kundur,Kannan Karthik
#t2004
#cProceedings of the IEEE
#index1037509
#% 
#!
  
#*Special Issue on Enabling Security Technologies for Digital Rights Management.
#@Deepa Kundur,Ching-Yung Lin,Benoit M. Macq,Hong-heather Yu
#t2004
#cProceedings of the IEEE
#index1037510
#% 
#!
  
#*The design and implementation of real-time schedulers in RED-linux.
#@Kwei-Jay Lin,Yu-Chung Wang
#t2003
#cProceedings of the IEEE
#index1037511
#% 
#!
  
#*A Retrospective of R*: A Distributed Database Management System.
#@Bruce G. Lindsay
#t1987
#cProceedings of the IEEE
#index1037512
#% 
#!
  
#*Java technology comes to real-time applications.
#@C. Douglas Locke,Peter C. Dibble
#t2003
#cProceedings of the IEEE
#index1037513
#% 
#!
  
#*Early Galactic Radio Astronomy at Kootwijk and Some Consequential Developments.
#@B. van Loon,A. Hin
#t2004
#cProceedings of the IEEE
#index1037514
#% 
#!
  
#*Anonymous Trust: Digital Rights Management Using Broadcast Encryption.
#@Jeffrey B. Lotspiech,Stefan Nusser,Florian Pestoni
#t2004
#cProceedings of the IEEE
#index1037515
#% 
#!
  
#*Benchmarking of Image Watermarking Algorithms for Digital Rights Management.
#@Benoit M. Macq,Jana Dittmann,Edward J. Delp
#t2004
#cProceedings of the IEEE
#index1037516
#% 
#!
  
#*Medical image registration using mutual information.
#@Frederik Maes,Dirk Vandermeulen,Paul Suetens
#t2003
#cProceedings of the IEEE
#index1037517
#% 
#!
  
#*New Approaches to Digital Evidence.
#@Ueli M. Maurer
#t2004
#cProceedings of the IEEE
#index1037518
#% 
#!
  
#*Legal Policy and Digital Rights Management.
#@R. Owens,R. Akalu
#t2004
#cProceedings of the IEEE
#index1037519
#% 
#!
  
#*Efficient State Updates for Key Management.
#@Benny Pinkas
#t2004
#cProceedings of the IEEE
#index1037520
#% 
#!
  
#*Multiscale medial shape-based analysis of image objects.
#@Stephen M. Pizer,Guido Gerig,Sarang C. Joshi,Stephen R. Aylward
#t2003
#cProceedings of the IEEE
#index1037521
#% 
#!
  
#*Techniques for enhancing real-time CORBA quality of service.
#@Irfan Pyarali,Douglas C. Schmidt,Ron Cytron
#t2003
#cProceedings of the IEEE
#index1037522
#% 
#!
  
#*Evolution of medical tomographic imaging-as seen from a Darwinian perspective.
#@Erik L. Ritman
#t2003
#cProceedings of the IEEE
#index1037523
#% 
#!
  
#*Partial-Match Via the Method of Superimposed Codes.
#@Charles S. Roberts
#t1979
#cProceedings of the IEEE
#index1037524
#% 
#!
  
#*Scanning the issue - special issue on emerging medical imaging technology.
#@Christian Roux,Jayaram K. Udupa
#t2003
#cProceedings of the IEEE
#index1037525
#% 
#!
  
#*Scanning the issue - special issue on modeling and design of embedded software.
#@Shankar Sastry,Janos Sztipanovits,Ruzena Bajcsy,H. Gill
#t2003
#cProceedings of the IEEE
#index1037526
#% 
#!
  
#*Upgrading real-time control software in the field.
#@Lui Sha
#t2003
#cProceedings of the IEEE
#index1037527
#% 
#!
  
#*Building models of real-time systems from application software.
#@Joseph Sifakis,Stavros Tripakis,Sergio Yovine
#t2003
#cProceedings of the IEEE
#index1037528
#% 
#!
  
#*Real-time communication and coordination in embedded sensor networks.
#@John A. Stankovic,Tarek F. Abdelzaher,Chenyang Lu,Lui Sha,Jennifer C. Hou
#t2003
#cProceedings of the IEEE
#index1037529
#% 
#!
  
#*Invisible formal methods for embedded control systems.
#@Ashish Tiwari,Natarajan Shankar,John M. Rushby
#t2003
#cProceedings of the IEEE
#index1037530
#% 
#!
  
#*Computational techniques for the verification of hybrid systems.
#@Claire Tomlin,Ian Mitchell,Alexandre M. Bayen,Meeko Oishi
#t2003
#cProceedings of the IEEE
#index1037531
#% 
#!
  
#*Recent advances in modeling response-time distributions in real-time systems.
#@Kishor S. Trivedi,Srinivasan Ramani,Ricardo M. Fricks
#t2003
#cProceedings of the IEEE
#index1037532
#% 
#!
  
#*Fuzzy connectedness and image segmentation.
#@Jayaram K. Udupa,Punam K. Saha
#t2003
#cProceedings of the IEEE
#index1037533
#% 
#!
  
#*Biometric Cryptosystems: Issues and Challenges.
#@Umut Uludag,Sharath Pankanti,Salil Prabhakar,Anil K. Jain
#t2004
#cProceedings of the IEEE
#index1037534
#% 
#!
  
#*System-level power-aware design techniques in real-time systems.
#@Osman S. Unsal,Israel Koren
#t2003
#cProceedings of the IEEE
#index1037535
#% 
#!
  
#*Matching clinical and biological needs with emerging imaging technologies.
#@Michael W. Vannier,E. V. Staab,Laurence P. Clarke
#t2003
#cProceedings of the IEEE
#index1037536
#% 
#!
  
#*Noninvasive assessment of bone architecture by magnetic resonance micro-imaging-based virtual bone biopsy.
#@Felix W. Wehrli,Punam K. Saha,Byron R. Gomberg,Hee Kwon Song
#t2003
#cProceedings of the IEEE
#index1037537
#% 
#!
  
#*Model-based programming of intelligent embedded systems and robotic space explorers.
#@Brian C. Williams,Michel D. Ingham,S. H. Chung,P. H. Elliott
#t2003
#cProceedings of the IEEE
#index1037538
#% 
#!
  
#*Memory system optimization of embedded software.
#@Wayne Wolf,Mahmut T. Kandemir
#t2003
#cProceedings of the IEEE
#index1037539
#% 
#!
  
#*Broadcast Delivery.
#@J. Wong
#t1988
#cProceedings of the IEEE
#index1037540
#% 
#!
  
#*The introduction of automatic telephone service in Madrid.
#@A. Perez Yuste,M. Salazar Palma
#t2003
#cProceedings of the IEEE
#index1037541
#% 
#!
  
#*Physics-based encapsulation in embedded software for distributed sensing and control applications.
#@Feng Zhao,Christopher Bailey-Kellogg,Markus P. J. Fromherz
#t2003
#cProceedings of the IEEE
#index1037542
#% 
#!
  
#*Overview of methods for image reconstruction from projections in emission computed tomography.
#@Robert M. Lewitt,Samuel Matej
#t2003
#cProceedings of the IEEE
#index1037543
#% 
#!
  
#*Dynamic X-ray computed tomography.
#@Stéphane Bonnet,A. Koenig,Sébastien Roux,P. Hugonnard,Régis Guillemaud,Pierre Grangeat
#t2003
#cProceedings of the IEEE
#index1037544
#% 
#!
  
#*Estimating motion from MRI data.
#@Cengizhan Ozturk,John A. Derbyshire,Elliot R. McVeigh
#t2003
#cProceedings of the IEEE
#index1037545
#% 
#!
  
#*Peer-to-Peer Media Streaming: Insights and New Developments.
#@Zhijie Shen,Jun Luo,Roger Zimmermann,Athanasios V. Vasilakos
#t2011
#cProceedings of the IEEE
#index3150996
#% 
#!
  
#*Future E-Enabled Aircraft Communications and Security: The Next 20 Years and Beyond.
#@Krishna Sampigethaya,Radha Poovendran,Sudhakar Shetty,Terry Davis,Chuck Royalty
#t2011
#cProceedings of the IEEE
#index3150994
#% 
#!
  
#*Peer-to-Peer Media Streaming: Insights and New Developments.
#@Jim Esch
#t2011
#cProceedings of the IEEE
#index3150997
#% 
#!
  
#*The Future of Satellite TV: The Wide Range of Applications of the DVB-S2 Standard and Perspectives.
#@Vittoria Mignone,Maria Angeles Vázquez-Castro,Thomas Stockhammer
#t2011
#cProceedings of the IEEE
#index3150979
#% 
#!
  
#*Applications, Architectures, and Protocol Design Issues for Mobile Social Networks: A Survey.
#@Howard Falk
#t2011
#cProceedings of the IEEE
#index3150986
#% 
#!
  
#*1945-2010: 65 Years of Satellite History From Early Visions to Latest Missions.
#@Barry G. Evans,Paul T. Thompson,Giovanni Emanuele Corazza,Alessandro Vanelli-Coralli,Enzo Alberto Candreva
#t2011
#cProceedings of the IEEE
#index3151001
#% 
#!
  
#*Satellite Radiolocalization From GPS to GNSS and Beyond: Novel Technologies and Applications for Civil Mass Market.
#@Carles Fernández-Prades,Letizia Lo Presti,Emanuela Falletti
#t2011
#cProceedings of the IEEE
#index3150992
#% 
#!
  
#*The protection of information in computer systems.
#@Jerome H. Saltzer,Michael D. Schroeder
#t1975
#cProceedings of the IEEE
#index3150987
#% 
#!
  
#*Aerospace Communications for Emergency Applications.
#@Matteo Berioli,Antonella Molinaro,Simone Morosi,Sandro Scalise
#t2011
#cProceedings of the IEEE
#index3150978
#% 
#!
  
#*Load Balancing and QoS Provisioning Based on Congestion Prediction for GEO/LEO Hybrid Satellite Networks.
#@Hiroki Nishiyama,Daigo Kudoh,Nei Kato,Naoto Kadowaki
#t2011
#cProceedings of the IEEE
#index3150981
#% 
#!
  
#*The Importance of the New Developments in Antennas for Wireless Communications.
#@Kwai-Man Luk
#t2011
#cProceedings of the IEEE
#index3150984
#% 
#!
  
#*Reviewing a Century of Electrical Engineering Progress: Approaching 100 Years of Publication.
#@Robert Trew,Jim Calder
#t2011
#cProceedings of the IEEE
#index3150989
#% 
#!
  
#*Electric Field-Shaping Microdevices for Manipulation of Collections of Microscale Objects.
#@Richard O'Donnell
#t2011
#cProceedings of the IEEE
#index3150995
#% 
#!
  
#*Scanning the Issue.
#@Jim Calder
#t2011
#cProceedings of the IEEE
#index3150988
#% 
#!
  
#*The Origins of Behn's "International System".
#@Antonio Pérez Yuste
#t2011
#cProceedings of the IEEE
#index3150998
#% 
#!
  
#*Design of Flower Constellations for Telecommunication Services.
#@Daniele Mortari,Mauro De Sanctis,Marco Lucente
#t2011
#cProceedings of the IEEE
#index3150983
#% 
#!
  
#*Delay- and Disruption-Tolerant Networking (DTN): An Alternative Solution for Future Satellite Networking Applications.
#@Carlo Caini,Haitham S. Cruickshank,Stephen Farrell,Mario Marchese
#t2011
#cProceedings of the IEEE
#index3150985
#% 
#!
  
#*Quantum Energy for Space.
#@Luke Burgess,Grant Bergstue,Richard Fork
#t2011
#cProceedings of the IEEE
#index3151003
#% 
#!
  
#*The Role of High-Altitude Platforms (HAPs) in the Global Wireless Connectivity.
#@Abbas Mohammed,Asad Mehmood,Fotini-Niovi Pavlidou,Mihael Mohorcic
#t2011
#cProceedings of the IEEE
#index3150993
#% 
#!
  
#*Reliability Options for Data Communications in the Future Deep-Space Missions.
#@Tomaso de Cola,Enrico Paolini,Gianluigi Liva,Gian Paolo Calzolari
#t2011
#cProceedings of the IEEE
#index3150990
#% 
#!
  
#*Aerospace Communications and Networking in the Next Two Decades: Current Trends and Future Perspectives [Scanning the Issue].
#@Claudio Sacchi,Abbas Jamalipour,Marina Ruggieri
#t2011
#cProceedings of the IEEE
#index3150991
#% 
#!
  
#*Energy Efficiency and Satellite Networking: A Holistic Overview.
#@Fatih Alagöz,Gürkan Gür
#t2011
#cProceedings of the IEEE
#index3150980
#% 
#!
  
#*Deep-Space Optical Communications: Future Perspectives and Applications.
#@Hamid Hemmati,Abhijit Biswas,Ivan B. Djordjevic
#t2011
#cProceedings of the IEEE
#index3151000
#% 
#!
  
#*Electric Field-Shaping Microdevices for Manipulation of Collections of Microscale Objects.
#@Konstantinos Varsos,Jonathan E. Luntz,Michael Welsh,Kamal Sarabandi
#t2011
#cProceedings of the IEEE
#index3150999
#% 
#!
  
#*EHF for Satellite Communications: The New Broadband Frontier.
#@Ernestina Cianca,Tommaso Rossi,Asher Yahalom,Yosef Pinhasi,John R. Farserotu,Claudio Sacchi
#t2011
#cProceedings of the IEEE
#index3150982
#% 
#!
  
#*Applications, Architectures, and Protocol Design Issues for Mobile Social Networks: A Survey.
#@Nipendra Kayastha,Dusit Niyato,Ping Wang,Ekram Hossain
#t2011
#cProceedings of the IEEE
#index3151002
#% 
#!
  
#*Challenges and Research Directions in Medical Cyber-Physical Systems.
#@Insup Lee,Oleg Sokolsky,Sanjian Chen,John Hatcliff,Eunkyoung Jee,BaekGyu Kim,Andrew L. King,Margaret Mullen-Fortino,Soojin Park,Alex Roederer,Krishna K. Venkatasubramanian
#t2012
#cProceedings of the IEEE
#index3262771
#% 
#!
  
#*Electricity Powering Combustion: Hydrogen Engines.
#@Sebastian Verhelst,Thomas Wallner,Helmut Eichlseder,Kaname Naganuma,Falk Gerbig,Brad Boyer,Shiro Tanno
#t2012
#cProceedings of the IEEE
#index3262762
#% 
#!
  
#*Body Sensor Networks: A Holistic Approach From Silicon to Users.
#@Benton H. Calhoun,John Lach,John A. Stankovic,David D. Wentzloff,Kamin Whitehouse,Adam T. Barth,Jonathan K. Brown,Qiang Li,Seunghyun Oh,Nathan E. Roberts,Yanqing Zhang
#t2012
#cProceedings of the IEEE
#index3262734
#% 
#!
  
#*Review of Solar Thermal Storage Techniques and Associated Heat Transfer Technologies.
#@Luisa F. Cabeza,Cristian Sole,Albert Castell,Eduard Oro,Antoni Gil
#t2012
#cProceedings of the IEEE
#index3262747
#% 
#!
  
#*How Thermal Energy Storage Enhances the Economic Viability of Concentrating Solar Power.
#@Seyed Hossein Madaeni,Ramteen Sioshansi,Paul Denholm
#t2012
#cProceedings of the IEEE
#index3262736
#% 
#!
  
#*A Mining Technique Using $N$ n-Grams and Motion Transcripts for Body Sensor Network Data Repository.
#@Vitali Loseu,Hassan Ghasemzadeh,Roozbeh Jafari
#t2012
#cProceedings of the IEEE
#index3262770
#% 
#!
  
#*Distributed Real-Time Software for Cyber-Physical Systems.
#@John C. Eidson,Edward A. Lee,Slobodan Matic,Sanjit A. Seshia,Jia Zou
#t2012
#cProceedings of the IEEE
#index3262740
#% 
#!
  
#*The Potential of Intermittent Renewables to Meet Electric Power Demand: Current Methods and Emerging Analytical Techniques.
#@Elaine K. Hart,Eric D. Stoutenburg,Mark Z. Jacobson
#t2012
#cProceedings of the IEEE
#index3262763
#% 
#!
  
#*Hydrogen Production From Water Electrolysis: Current Status and Future Trends.
#@Alfredo Ursua,Luis M. Gandia,Pablo Sanchis
#t2012
#cProceedings of the IEEE
#index3262751
#% 
#!
  
#*A Cyber-Physical Systems Approach to Data Center Modeling and Control for Energy Efficiency.
#@Luca Parolini,Bruno Sinopoli,Bruce H. Krogh,Zhikui Wang
#t2012
#cProceedings of the IEEE
#index3262765
#% 
#!
  
#*Toward a Science of Cyber-Physical System Integration.
#@Janos Sztipanovits,Xenofon D. Koutsoukos,Gabor Karsai,Nicholas Kottenstette,Panos J. Antsaklis,Vijay Gupta,Bill Goodwine,John S. Baras,Shige Wang
#t2012
#cProceedings of the IEEE
#index3262750
#% 
#!
  
#*A Hierarchical Flight Planning Framework for Air Traffic Management.
#@Wei Zhang,Maryam Kamgarpour,Dengfeng Sun,Claire J. Tomlin
#t2012
#cProceedings of the IEEE
#index3262737
#% 
#!
  
#*The Future of Renewables Linked by a Transnational Asian Grid.
#@Stewart Taggart,Geoffrey James,ZhaoYang Dong,Christopher Russell
#t2012
#cProceedings of the IEEE
#index3262760
#% 
#!
  
#*The History, Present State, and Future Prospects of Underground Pumped Hydro for Massive Energy Storage.
#@William F. Pickard
#t2012
#cProceedings of the IEEE
#index3262741
#% 
#!
  
#*Concept and Development of a Pumped Heat Electricity Storage Device.
#@Jonathan Howes
#t2012
#cProceedings of the IEEE
#index3262738
#% 
#!
  
#*A Hybrid System Approach to the Analysis and Design of Power Grid Dynamic Performance.
#@Yoshihiko Susuki,T. John Koo,Hiroaki Ebina,Takuya Yamazaki,Takashi Ochi,Takuji Uemura,Takashi Hikihara
#t2012
#cProceedings of the IEEE
#index3262742
#% 
#!
  
#*A Review of Ammonia-Based Thermochemical Energy Storage for Concentrating Solar Power.
#@Rebecca Dunn,Keith Lovegrove,Greg Burgess
#t2012
#cProceedings of the IEEE
#index3262749
#% 
#!
  
#*Robust Control for Mobility and Wireless Communication in Cyber-Physical Systems With Application to Robot Teams.
#@Jonathan Fink,Alejandro Ribeiro,Vijay Kumar
#t2012
#cProceedings of the IEEE
#index3262758
#% 
#!
  
#*Addressing the Intermittency Challenge: Massive Energy Storage in a Sustainable Future [Scanning the Issue].
#@William F. Pickard,Derek Abbott
#t2012
#cProceedings of the IEEE
#index3262764
#% 
#!
  
#*Geotechnical Issues in the Creation of Underground Reservoirs for Massive Energy Storage.
#@Nasim Uddin
#t2012
#cProceedings of the IEEE
#index3262739
#% 
#!
  
#*A Thermodynamic Analysis of Multistage Adiabatic CAES.
#@Giuseppe Grazzini,Adriano Milazzo
#t2012
#cProceedings of the IEEE
#index3262767
#% 
#!
  
#*Marine Energy: The Key for the Development of Sustainable Energy Supply.
#@Xiao-Ping Zhang
#t2012
#cProceedings of the IEEE
#index3262761
#% 
#!
  
#*Special Issue on Cyber-Physical Systems [Scanning the Issue].
#@Radha Poovendran,Krishna Sampigethaya,Sandeep K. S. Gupta,Insup Lee,K. Venkatesh Prasad,David Corman,James L. Paunicka
#t2012
#cProceedings of the IEEE
#index3262743
#% 
#!
  
#*Toward Continuous State-Space Regulation of Coupled Cyber-Physical Systems.
#@Justin M. Bradley,Ella M. Atkins
#t2012
#cProceedings of the IEEE
#index3262748
#% 
#!
  
#*Cyber-Physical Modeling of Implantable Cardiac Medical Devices.
#@Zhihao Jiang,Miroslav Pajic,Rahul Mangharam
#t2012
#cProceedings of the IEEE
#index3262759
#% 
#!
  
#*Distributed Coordination of Internet Data Centers Under Multiregional Electricity Markets.
#@Lei Rao,Xue Liu,Marija D. Ilic,Jie Liu
#t2012
#cProceedings of the IEEE
#index3262766
#% 
#!
  
#*Modeling Cyber-Physical Systems.
#@Patricia Derler,Edward A. Lee,Alberto L. Sangiovanni-Vincentelli
#t2012
#cProceedings of the IEEE
#index3262733
#% 
#!
  
#*Molten-Salt Power Towers: Newly Commercial Concentrating Solar Storage.
#@Rebecca I. Dunn,Patrick J. Hearps,Matthew N. Wright
#t2012
#cProceedings of the IEEE
#index3262755
#% 
#!
  
#*Energy Storage via Carbon-Neutral Fuels Made From CO $_{2}$, Water, and Renewable Energy.
#@Richard J. Pearson,Matthew D. Eisaman,James W. G. Turner,Peter P. Edwards,Zheng Jiang,Vladimir L. Kuznetsov,Karl A. Littau,Leon di Marco,S. R. Gordon Taylor
#t2012
#cProceedings of the IEEE
#index3262744
#% 
#!
  
#*Real-Time Feedback-Controlled Robotic Fish for Behavioral Experiments With Fish Schools.
#@Daniel T. Swain,Iain D. Couzin,Naomi Ehrich Leonard
#t2012
#cProceedings of the IEEE
#index3262772
#% 
#!
  
#*High-Temperature Solid-Media Thermal Energy Storage for Solar Thermal Power Plants.
#@Doerte Laing,Carsten Bahl,Thomas Bauer,Michael Fiss,Nils Breidenbach,Matthias Hempel
#t2012
#cProceedings of the IEEE
#index3262756
#% 
#!
  
#*Cyber-Physical System Security for the Electric Power Grid.
#@Siddharth Sridhar,Adam Hahn,Manimaran Govindarasu
#t2012
#cProceedings of the IEEE
#index3262769
#% 
#!
  
#*Energy Storage & the Grid - From Characteristics to Impact [Point of View].
#@Avi M. Gopstein
#t2012
#cProceedings of the IEEE
#index3262745
#% 
#!
  
#*Seasonal Energy Storage in a Renewable Energy System.
#@Alvin O. Converse
#t2012
#cProceedings of the IEEE
#index3262754
#% 
#!
  
#*Powering a Ventricular Assist Device (VAD) With the Free-Range Resonant Electrical Energy Delivery (FREE-D) System.
#@Benjamin H. Waters,Alanson P. Sample,Pramod Bonde,Joshua R. Smith
#t2012
#cProceedings of the IEEE
#index3262752
#% 
#!
  
#*Concentrating Solar Thermal Heat Storage Using Metal Hydrides.
#@David N. Harries,Mark Paskevicius,Drew A. Sheppard,Tobias Edward Cameron Price,Craig E. Buckley
#t2012
#cProceedings of the IEEE
#index3262757
#% 
#!
  
#*Cyber-Physical Security of a Smart Grid Infrastructure.
#@Yilin Mo,Tiffany Hyun-Jin Kim,Kenneth Brancik,Dona Dickinson,Heejo Lee,Adrian Perrig,Bruno Sinopoli
#t2012
#cProceedings of the IEEE
#index3262746
#% 
#!
  
#*Reducing Transient and Steady State Electricity Consumption in HVAC Using Learning-Based Model-Predictive Control.
#@Anil Aswani,Neal Master,Jay Taneja,David E. Culler,Claire Tomlin
#t2012
#cProceedings of the IEEE
#index3262768
#% 
#!
  
#*State of the Art in Ultrahigh-Voltage Transmission.
#@Thomas James Hammons,Victor F. Lescale,Karl Uecker,Marcus Haeusler,Dietmar Retzmann,Konstantin Staschus,Sébastien Lepy
#t2012
#cProceedings of the IEEE
#index3262735
#% 
#!
  
#*Ensuring Safety, Security, and Sustainability of Mission-Critical Cyber-Physical Systems.
#@Ayan Banerjee,Krishna K. Venkatasubramanian,Tridib Mukherjee,Sandeep K. S. Gupta
#t2012
#cProceedings of the IEEE
#index3262753
#% 
#!
  
#*A Decision Task in a Social Context: Human Experiments, Models, and Analyses of Behavioral Data.
#@Andrea Nedic,Damon Tomlin,Philip Holmes,Deborah A. Prentice,Jonathan D. Cohen
#t2012
#cProceedings of the IEEE
#index3318800
#% 
#!
  
#*The Impact of Human-Automation Collaboration in Decentralized Multiple Unmanned Vehicle Control.
#@M. L. Cummings,Jonathan P. How,Andrew Whitten,Olivier Toupet
#t2012
#cProceedings of the IEEE
#index3318799
#% 
#!
  
#*Towards Human-Robot Teams: Model-Based Analysis of Human Decision Making in Two-Alternative Choice Tasks With Social Feedback.
#@Andrew Reed Stewart,Ming Cao,Andrea Nedic,Damon Tomlin,Naomi Ehrich Leonard
#t2012
#cProceedings of the IEEE
#index3318791
#% 
#!
  
#*Proceedings of the IEEE Through 100 Years: 1920-1929.
#@
#t2012
#cProceedings of the IEEE
#index3318789
#% 
#!
  
#*Human-Oriented Control for Haptic Teleoperation.
#@Sandra Hirche,Martin Buss
#t2012
#cProceedings of the IEEE
#index3318798
#% 
#!
  
#*Moral Decision Making in Autonomous Systems: Enforcement, Moral Emotions, Dignity, Trust, and Deception.
#@Ronald C. Arkin,Patrick Ulam,Alan R. Wagner
#t2012
#cProceedings of the IEEE
#index3318792
#% 
#!
  
#*The Research University of the Future.
#@Robert M. Nerem
#t2012
#cProceedings of the IEEE
#index3318790
#% 
#!
  
#*Corrections to "Hydrogen Production From Water Electrolysis: Current Status and Future Trends".
#@Alfredo Ursua,Luis M. Gandia,Pablo Sanchis
#t2012
#cProceedings of the IEEE
#index3318797
#% 
#!
  
#*Accuracy and Decision Time for Sequential Decision Aggregation.
#@Sandra H. Dandach,Ruggero Carli,Francesco Bullo
#t2012
#cProceedings of the IEEE
#index3318788
#% 
#!
  
#*Interaction Dynamics: The Interface of Humans and Smart Machines.
#@John Baillieul,Naomi Ehrich Leonard,Kristi A. Morgansen
#t2012
#cProceedings of the IEEE
#index3318803
#% 
#!
  
#*A Dynamical Queue Approach to Intelligent Task Management for Human Operators.
#@Ketan Savla,Emilio Frazzoli
#t2012
#cProceedings of the IEEE
#index3318796
#% 
#!
  
#*Building and Verifying a Predictive Model of Interruption Resumption.
#@J. Gregory Trafton,Allison M. Jacobs,Anthony M. Harrison
#t2012
#cProceedings of the IEEE
#index3318793
#% 
#!
  
#*Deterministic Modeling and Evaluation of Decision-Making Dynamics in Sequential Two-Alternative Forced Choice Tasks.
#@Caleb Woodruff,Linh Vu,Kristi A. Morgansen,Damon Tomlin
#t2012
#cProceedings of the IEEE
#index3318802
#% 
#!
  
#*A Sketch Interface for Robust and Natural Robot Control.
#@Danelle C. Shah,Joseph Schneider,Mark E. Campbell
#t2012
#cProceedings of the IEEE
#index3318794
#% 
#!
  
#*Decision Making for Rapid Information Acquisition in the Reconnaissance of Random Fields.
#@Dimitar Baronov,John Baillieul
#t2012
#cProceedings of the IEEE
#index3318795
#% 
#!
  
#*Autonomy Spectrum and Performance Perception Issues in Swarm Supervisory Control.
#@Gilles Coppin,François Legras
#t2012
#cProceedings of the IEEE
#index3318801
#% 
#!
  
#*Multiterminal Memristive Nanowire Devices for Logic and Memory Applications: A Review.
#@Davide Sacchetto,Giovanni De Micheli,Yusuf Leblebici
#t2012
#cProceedings of the IEEE
#index3382030
#% 
#!
  
#*Prolog to the Section on Personal and Home Electronics.
#@Miwako Doi,Jeff Howell,Shuji Hirakawa
#t2012
#cProceedings of the IEEE
#index3382035
#% 
#!
  
#*Wireless Myths, Realities, and Futures: From 3G/4G to Optical and Quantum Wireless.
#@Lajos Hanzo,Harald Haas,Sándor Imre,Dominic C. O'Brien,Markus Rupp,Laszlo Gyongyosi
#t2012
#cProceedings of the IEEE
#index3382036
#% 
#!
  
#*Prolog to the Section on Engineering Education.
#@Leah H. Jamieson
#t2012
#cProceedings of the IEEE
#index3381964
#% 
#!
  
#*Frontiers of Audiovisual Communications: New Convergences of Broadband Communications, Computing, and Rich Media.
#@Nikil Jayant
#t2012
#cProceedings of the IEEE
#index3381974
#% 
#!
  
#*FootSLAM: Pedestrian Simultaneous Localization and Mapping Without Exteroceptive Sensors - Hitchhiking on Human Perception and Cognition.
#@Michael Angermann,Patrick Robertson
#t2012
#cProceedings of the IEEE
#index3381944
#% 
#!
  
#*Computational Social Systems [Reflections and Reviews of Past Predictions].
#@Eunice E. Santos
#t2012
#cProceedings of the IEEE
#index3382021
#% 
#!
  
#*Prolog to the Section on Privacy and Cybersecurity.
#@Carl E. Landwehr
#t2012
#cProceedings of the IEEE
#index3381971
#% 
#!
  
#*Hardware/Software Codesign: The Past, the Present, and Predicting the Future.
#@Jürgen Teich
#t2012
#cProceedings of the IEEE
#index3381935
#% 
#!
  
#*Social Implications of Technology: The Past, the Present, and the Future.
#@Karl D. Stephan,Katina Michael,M. G. Michael,Laura Jacob,Emily P. Anesta
#t2012
#cProceedings of the IEEE
#index3381945
#% 
#!
  
#*Hybrid Optical-Wireless Access Networks.
#@Leonid Kazovsky,Shing-Wa Wong,Tolga Ayhan,Kadir Melih Albeyoglu,Moisés R. N. Ribeiro,Anujit Shastri
#t2012
#cProceedings of the IEEE
#index3381985
#% 
#!
  
#*A Cyber-Physical Future.
#@Ragunathan Rajkumar
#t2012
#cProceedings of the IEEE
#index3381938
#% 
#!
  
#*Prolog to the Section on Wireless Communications Technology.
#@Lajos Hanzo,Harald Haas,Sándor Imre,Dominic C. O'Brien,Markus Rupp,Laszlo Gyongyosi
#t2012
#cProceedings of the IEEE
#index3381998
#% 
#!
  
#*Prolog to the Section on Transportation and Navigation Technology.
#@Christoph Gunther
#t2012
#cProceedings of the IEEE
#index3382013
#% 
#!
  
#*Prolog to the Section on Advanced Materials for Electronics, Photonics, and Energy Storage.
#@Babu Chalamala
#t2012
#cProceedings of the IEEE
#index3382008
#% 
#!
  
#*Multilayer and Multidomain Resilience in Optical Networks.
#@Dominic A. Schupke
#t2012
#cProceedings of the IEEE
#index3381995
#% 
#!
  
#*Privacy and Cybersecurity: The Next 100 Years.
#@Carl E. Landwehr,Dan Boneh,John C. Mitchell,Steven M. Bellovin,Susan Landau,Michael E. Lesk
#t2012
#cProceedings of the IEEE
#index3381989
#% 
#!
  
#*Prolog to the Section on Hardware/Software Codesign.
#@Soonhoi Ha
#t2012
#cProceedings of the IEEE
#index3381937
#% 
#!
  
#*Proceedings of the IEEE Through 100 Years: 1930-1939.
#@
#t2012
#cProceedings of the IEEE
#index3382006
#% 
#!
  
#*Beings on Earth: Is That All There Is?
#@Gerry R. Harp,G. Seth Shostak,Jill Tarter,Douglas A. Vakoch,David Deboer,Jack Welch
#t2012
#cProceedings of the IEEE
#index3381984
#% 
#!
  
#*Engineering Education Today: Capturing the Afterlife of Sisyphus in Five Snapshots.
#@R. Alan Cheville
#t2012
#cProceedings of the IEEE
#index3382044
#% 
#!
  
#*Prolog to the Section on Neurotechnological Systems: The Brain-Computer Interface.
#@Chin-Teng Lin,Kaleb McDowell
#t2012
#cProceedings of the IEEE
#index3382015
#% 
#!
  
#*Proceedings of the IEEE THROUGH 100 YEARS: 1950-1959 [Scanning our Past].
#@Alexander B. Magoun
#t2012
#cProceedings of the IEEE
#index3381982
#% 
#!
  
#*Prolog to the Section on Cyber-Physical Systems.
#@Kyoung-Dae Kim,P. R. Kumar
#t2012
#cProceedings of the IEEE
#index3381956
#% 
#!
  
#*FTV for 3-D Spatial Communication.
#@Masayuki Tanimoto,Mehrdad Panahpour Tehrani,Toshiaki Fujii,Tomohiro Yendo
#t2012
#cProceedings of the IEEE
#index3381972
#% 
#!
  
#*Scanning the Proceedings for History [Centennial History].
#@Gordon W. Day
#t2012
#cProceedings of the IEEE
#index3381990
#% 
#!
  
#*Personal and Home Electronics and Our Changing Lifestyles.
#@Miwako Doi,Jeff Howell,Shuji Hirakawa
#t2012
#cProceedings of the IEEE
#index3382023
#% 
#!
  
#*Spaceflight: The Development of Science, Surveillance, and Commerce in Space.
#@Roger D. Launius,Erik M. Conway,Andrew K. Johnston,Zse Chien Wang,Matthew H. Hersch,Deganit Paikowsky,David J. Whalen,Eric Toldi,Kerrie Dougherty,Peter L. Hays,Jennifer Levasseur,Ralph L. McNutt,Brent Sherwood
#t2012
#cProceedings of the IEEE
#index3382041
#% 
#!
  
#*Memristors With Flexible Electronic Applications.
#@Nadine Gergel-Hackett,Joseph L. Tedesco,Curt A. Richter
#t2012
#cProceedings of the IEEE
#index3382016
#% 
#!
  
#*Prolog to the Section on Entertainment Technologies.
#@Sheau Ng
#t2012
#cProceedings of the IEEE
#index3382007
#% 
#!
  
#*Advances in Medical Devices and Medical Electronics.
#@Michael R. Neuman,Gail D. Baura,Stuart Meldrum,Orhan Soykan,Max E. Valentinuzzi,Ron S. Leder,Silvestro Micera,Yuan-Ting Zhang
#t2012
#cProceedings of the IEEE
#index3382005
#% 
#!
  
#*Memristive Device Fundamentals and Modeling: Applications to Circuits and Systems Simulation.
#@Kamran Eshraghian,Omid Kavehei,Kyoung-Rok Cho,James M. Chappell,Azhar Iqbal,Said F. Al-Sarawi,Derek Abbott
#t2012
#cProceedings of the IEEE
#index3381983
#% 
#!
  
#*Next-Generation Applications on Cellular Networks: Trends, Challenges, and Solutions.
#@Nimish Radio,Ying Zhang,Mallik Tatipamula,Vijay K. Madisetti
#t2012
#cProceedings of the IEEE
#index3382034
#% 
#!
  
#*Evolution of Optical Access Networks: Architectures and Capacity Upgrades.
#@Glen Kramer,Marilet De Andrade,Rajesh Roy,Pulak Chowdhury
#t2012
#cProceedings of the IEEE
#index3381992
#% 
#!
  
#*All-Optical Networking - Evolution, Benefits, Challenges, and Future Vision.
#@Adel A. M. Saleh,Jane M. Simmons
#t2012
#cProceedings of the IEEE
#index3381963
#% 
#!
  
#*Prolog to the Section on Social Implications of Technology.
#@Karl D. Stephan
#t2012
#cProceedings of the IEEE
#index3381955
#% 
#!
  
#*Memristor Bridge Synapses.
#@Hyongsuk Kim,Maheshwar Pd. Sah,Changju Yang,Tamás Roska,Leon O. Chua
#t2012
#cProceedings of the IEEE
#index3381946
#% 
#!
  
#*Display Holography's Digital Second Act.
#@V. Michael Bove
#t2012
#cProceedings of the IEEE
#index3381962
#% 
#!
  
#*The Road to Immersive Communication.
#@John G. Apostolopoulos,Philip A. Chou,W. Bruce Culbertson,Ton Kalker,Mitchell D. Trott,Susie Wee
#t2012
#cProceedings of the IEEE
#index3381981
#% 
#!
  
#*Leveraging Memristive Systems in the Construction of Digital Logic Circuits.
#@Garrett S. Rose,Jeyavijayan Rajendran,Harika Manem,Ramesh Karri,Robinson E. Pino
#t2012
#cProceedings of the IEEE
#index3382014
#% 
#!
  
#*Prolog to the Section on Optics and Photonics.
#@Alan E. Willner,Robert L. Byer,Constance J. Chang-Hasnain,Stephen R. Forrest,Henry Kressel,Herwig Kogelnik,Guillermo J. Tearney,Charles H. Townes,Michalis N. Zervas
#t2012
#cProceedings of the IEEE
#index3381969
#% 
#!
  
#*Bionanoscience in Health and Medicine.
#@Rashid Bashir
#t2012
#cProceedings of the IEEE
#index3381975
#% 
#!
  
#*Metal-Oxide RRAM.
#@H.-S. Philip Wong,Heng-Yuan Lee,Shimeng Yu,Yu-Sheng Chen,Yi Wu,Pang-Shiu Chen,Byoungil Lee,Frederick T. Chen,Ming-Jinn Tsai
#t2012
#cProceedings of the IEEE
#index3381940
#% 
#!
  
#*Analysis of Passive Memristive Devices Array: Data-Dependent Statistical Model and Self-Adaptable Sense Resistance for RRAMs.
#@Sangho Shin,Kyungmin Kim,Sung-Mo Kang
#t2012
#cProceedings of the IEEE
#index3382017
#% 
#!
  
#*Evolving Signal Processing for Brain-Computer Interfaces.
#@Scott Makeig,Christian Kothe,Tim Mullen,Nima Bigdely Shamlo,Zhilin Zhang,Kenneth Kreutz-Delgado
#t2012
#cProceedings of the IEEE
#index3381947
#% 
#!
  
#*The Fourth Element.
#@Leon O. Chua
#t2012
#cProceedings of the IEEE
#index3382010
#% 
#!
  
#*Like Being There [Reflections and Reviews of Past Predictions].
#@James L. Flanagan
#t2012
#cProceedings of the IEEE
#index3381968
#% 
#!
  
#*Overview for Reflections and Reviews of Past Predictions [Reflections and Reviews of Past Predictions].
#@H. Joel Trusell
#t2012
#cProceedings of the IEEE
#index3382033
#% 
#!
  
#*Social Television: Enabling Technologies and Architectures.
#@Marie-José Montpetit,Muriel Médard
#t2012
#cProceedings of the IEEE
#index3381934
#% 
#!
  
#*History, Evolution, and Future Status of Energy Storage.
#@M. Stanley Whittingham
#t2012
#cProceedings of the IEEE
#index3381961
#% 
#!
  
#*Centennial Special Issue [Scanning the Issue].
#@Jim Calder
#t2012
#cProceedings of the IEEE
#index3381941
#% 
#!
  
#*Entertainment in the Age of Big Data.
#@Tawny Schlieski,Brian David Johnson
#t2012
#cProceedings of the IEEE
#index3382004
#% 
#!
  
#*Frontiers of Wireless and Mobile Communications.
#@Dipankar Raychaudhuri,Narayan B. Mandayam
#t2012
#cProceedings of the IEEE
#index3381954
#% 
#!
  
#*Beyond 2020: Preparing Engineers for the Future.
#@Sarah A. Rajala
#t2012
#cProceedings of the IEEE
#index3382018
#% 
#!
  
#*Multimedia Standards: Interfaces to Innovation.
#@Leonardo Chiariglione
#t2012
#cProceedings of the IEEE
#index3381997
#% 
#!
  
#*Scanning My Past: Some Personal Reflections Stimulated by the Proceedings Centennial [Scanning the Past].
#@James E. Brittain
#t2012
#cProceedings of the IEEE
#index3381970
#% 
#!
  
#*Back to the Future - 1962 Redux [Reflections and Reviews of Past Predictions].
#@Robert Lucky
#t2012
#cProceedings of the IEEE
#index3381948
#% 
#!
  
#*Cyber-Physical Systems: A Perspective at the Centennial.
#@Kyoung-Dae Kim,P. R. Kumar
#t2012
#cProceedings of the IEEE
#index3382024
#% 
#!
  
#*Communication Technologies for People With Sensory Disabilities.
#@Richard E. Ladner
#t2012
#cProceedings of the IEEE
#index3382031
#% 
#!
  
#*The Evolution of Video Processing Technology and Its Main Drivers.
#@Jorge E. Caviedes
#t2012
#cProceedings of the IEEE
#index3381967
#% 
#!
  
#*Optical Networks for Grid and Cloud Computing Applications.
#@Chris Develder,Marc De Leenheer,Bart Dhoedt,Mario Pickavet,Didier Colle,Filip De Turck,Piet Demeester
#t2012
#cProceedings of the IEEE
#index3381939
#% 
#!
  
#*Molecular Engineering to Computer Science: The Role of Photonics in the Convergence of Communications and Computing.
#@Robert F. Leheny
#t2012
#cProceedings of the IEEE
#index3382009
#% 
#!
  
#*The Evolution of Configurable Wavelength Multiplexed Optical Networks - A Historical Perspective.
#@Rod C. Alferness
#t2012
#cProceedings of the IEEE
#index3381976
#% 
#!
  
#*The Evolution of Optical Networking.
#@Ioannis Tomkos,Biswanath Mukherjee,Steven K. Korotky,Rodney S. Tucker,Leda M. Lunardi
#t2012
#cProceedings of the IEEE
#index3382025
#% 
#!
  
#*Brain-Computer Interface Technologies in the Coming Decades.
#@Brent J. Lance,Scott E. Kerick,Anthony J. Ries,Kelvin S. Oie,Kaleb McDowell
#t2012
#cProceedings of the IEEE
#index3382003
#% 
#!
  
#*Satellite Navigation for Aviation in 2025.
#@Juan Blanch,Todd Walter,Per Enge
#t2012
#cProceedings of the IEEE
#index3382047
#% 
#!
  
#*Do We Need Video Systems "Beyond HDTV"?
#@Fumio Okano,Yoshiaki Shishikui
#t2012
#cProceedings of the IEEE
#index3382019
#% 
#!
  
#*Next-Generation Optical Network Architecture and Multidomain Issues.
#@Joseph E. Berthold,Lyndon Y. Ong
#t2012
#cProceedings of the IEEE
#index3381942
#% 
#!
  
#*100G and Beyond Transmission Technologies for Evolving Optical Networks and Relevant Physical-Layer Issues.
#@Ezra Ip,Philip N. Ji,Eduardo Mateo,Yue-Kai Huang,Lei Xu,DaYou Qian,Neng Bai,Ting Wang
#t2012
#cProceedings of the IEEE
#index3382012
#% 
#!
  
#*Prolog to the Section on The Search for Life: SETI.
#@G. Seth Shostak
#t2012
#cProceedings of the IEEE
#index3381953
#% 
#!
  
#*Here We Are! Where Are We? Locating Mixed Reality in The Age of the Smartphone.
#@Evan Barba,Blair MacIntyre,Elizabeth D. Mynatt
#t2012
#cProceedings of the IEEE
#index3381933
#% 
#!
  
#*Prolog to the Section on Mass Storage and Data Retrieval.
#@Xiaofang Zhou
#t2012
#cProceedings of the IEEE
#index3382040
#% 
#!
  
#*Five Major Shifts in 100 Years of Engineering Education.
#@Jeffrey E. Froyd,Phillip C. Wankat,Karl A. Smith
#t2012
#cProceedings of the IEEE
#index3381952
#% 
#!
  
#*Memristors: Devices, Models, and Applications [Scanning the Issue].
#@Pinaki Mazumder,Sung Mo Kang,Rainer Waser
#t2012
#cProceedings of the IEEE
#index3381957
#% 
#!
  
#*Evolution of Optical Networking Toward Rich Digital Media Services.
#@Admela Jukan,Joe Mambretti
#t2012
#cProceedings of the IEEE
#index3382026
#% 
#!
  
#*To Learn About Nature Look to Nature Itself [Reflections and Reviews of Past Predictions].
#@Edwin R. Lewis
#t2012
#cProceedings of the IEEE
#index3382032
#% 
#!
  
#*Prolog to the Section on Space Exploration and Science.
#@Faramaz Davarian
#t2012
#cProceedings of the IEEE
#index3381950
#% 
#!
  
#*Scaling Potential of Local Redox Processes in Memristive SrTiO Thin-Film Devices.
#@Regina Dittmann,Ruth Muenstermann,Ingo Krug,Daesung Park,Tobias Menke,Joachim Mayer,Astrid Besmehn,Florian Kronast,Claus Michael Schneider,Rainer Waser
#t2012
#cProceedings of the IEEE
#index3382001
#% 
#!
  
#*100 Years in the Past and 100 Years in The Future [Point of View].
#@Peter Cochrane
#t2012
#cProceedings of the IEEE
#index3382048
#% 
#!
  
#*Device Properties of Bernoulli Memristors.
#@Panayiotis S. Georgiou,Mauricio Barahona,Sophia N. Yaliraki,Emmanuel M. Drakakis
#t2012
#cProceedings of the IEEE
#index3382011
#% 
#!
  
#*Silicon Crystal Growth and Wafer Technologies.
#@Graham Fisher,Michael R. Seacrist,Robert W. Standley
#t2012
#cProceedings of the IEEE
#index3382045
#% 
#!
  
#*Smart Grids and Beyond: Achieving the Full Potential of Electricity Systems.
#@Mladen Kezunovic,James D. McCalley,Thomas J. Overbye
#t2012
#cProceedings of the IEEE
#index3382038
#% 
#!
  
#*Optical Flow Switching Networks.
#@Vincent W. S. Chan
#t2012
#cProceedings of the IEEE
#index3381993
#% 
#!
  
#*Very High-Resolution Remote Sensing: Challenges and Opportunities [Point of View].
#@Jon Atli Benediktsson,Jocelyn Chanussot,Wooil M. Moon
#t2012
#cProceedings of the IEEE
#index3382002
#% 
#!
  
#*Autonomous Ground Vehicles - Concepts and a Path to the Future.
#@Thorsten Luettel,Michael Himmelsbach,Hans-Joachim Wuensche
#t2012
#cProceedings of the IEEE
#index3382027
#% 
#!
  
#*Optics and Photonics: Key Enabling Technologies.
#@Alan E. Willner,Robert L. Byer,Constance J. Chang-Hasnain,Stephen R. Forrest,Henry Kressel,Herwig Kogelnik,Guillermo J. Tearney,Charles H. Townes,Michalis N. Zervas
#t2012
#cProceedings of the IEEE
#index3381959
#% 
#!
  
#*Cross-Layer Approaches for Planning and Operating Impairment-Aware Optical Networks.
#@Josep Solé-Pareta,Suresh Subramaniam,Davide Careglio,Salvatore Spadaro
#t2012
#cProceedings of the IEEE
#index3381960
#% 
#!
  
#*Optical Network Management and Control.
#@Robert D. Doverspike,Jennifer Yates
#t2012
#cProceedings of the IEEE
#index3382020
#% 
#!
  
#*Prolog to the Section on Medical Devices and Electronics.
#@Michael R. Neuman
#t2012
#cProceedings of the IEEE
#index3382039
#% 
#!
  
#*Capacity Trends and Limits of Optical Communication Networks.
#@René-Jean Essiambre,Robert W. Tkach
#t2012
#cProceedings of the IEEE
#index3381977
#% 
#!
  
#*Energy Challenges in Current and Future Optical Transmission Networks.
#@Daniel C. Kilper,Kyle Guan,Kerry Hinton,Robert Ayre
#t2012
#cProceedings of the IEEE
#index3381951
#% 
#!
  
#*Wavelength-Selective Reconfiguration in Transparent Agile Optical Networks.
#@Steven Frisken,Simon B. Poole,Glenn W. Baxter
#t2012
#cProceedings of the IEEE
#index3381996
#% 
#!
  
#*Spectrum Access Technologies: The Past, the Present, and the Future.
#@Jeffrey H. Reed,Jennifer T. Bernhard,Jung-Min Park
#t2012
#cProceedings of the IEEE
#index3382046
#% 
#!
  
#*The History of Information Retrieval Research.
#@Mark Sanderson,W. Bruce Croft
#t2012
#cProceedings of the IEEE
#index3381978
#% 
#!
  
#*The Economists' Contribution to Radio Spectrum Access: The Past, the Present, and the Future.
#@Eli M. Noam
#t2012
#cProceedings of the IEEE
#index3381949
#% 
#!
  
#*Prolog to the Section on Science and Engineering Beyond Moore's Law.
#@Ralph K. Cavin III,Paolo Lugli,Victor V. Zhirnov
#t2012
#cProceedings of the IEEE
#index3381987
#% 
#!
  
#*Science and Engineering Beyond Moore's Law.
#@Ralph K. Cavin III,Paolo Lugli,Victor V. Zhirnov
#t2012
#cProceedings of the IEEE
#index3382037
#% 
#!
  
#*Mobile Clouds: The New Content Distribution Platform.
#@Morten Videbæk Pedersen,Frank H. P. Fitzek
#t2012
#cProceedings of the IEEE
#index3381966
#% 
#!
  
#*Port-Hamiltonian Formulation of Systems With Memory.
#@Dimitri Jeltsema,Arnau Doria-Cerezo
#t2012
#cProceedings of the IEEE
#index3381999
#% 
#!
  
#*Flexible Electronics: The Next Ubiquitous Platform.
#@Arokia Nathan,Arman Ahnood,Matthew T. Cole,Sungsik Lee,Yuji Suzuki,Pritesh Hiralal,Francesco Bonaccorso,Tawfique Hasan,Luis Garcia-Gancedo,Andriy Dyadyusha,Samiul Haque,Piers Andrew,Stephan Hofmann,James Moultrie,Daping Chu,Andrew J. Flewitt,Andrea C. Ferrari,Michael J. Kelly,John Robertson,Gehan A. J. Amaratunga,William I. Milne
#t2012
#cProceedings of the IEEE
#index3382049
#% 
#!
  
#*Neuromorphic, Digital, and Quantum Computation With Memory Circuit Elements.
#@Yuriy V. Pershin,Massimiliano Di Ventra
#t2012
#cProceedings of the IEEE
#index3381991
#% 
#!
  
#*A Brief History of Entertainment Technologies.
#@Sheau Ng
#t2012
#cProceedings of the IEEE
#index3381958
#% 
#!
  
#*Research Funding and the Proceedings of the IEEE Centennial [Reflections and Reviews of Past Predictions].
#@Robert Trew
#t2012
#cProceedings of the IEEE
#index3382042
#% 
#!
  
#*Biosensor Technologies for Augmented Brain-Computer Interfaces in the Next Decades.
#@Lun-De Liao,Chin-Teng Lin,Kaleb McDowell,Alma E. Wickenden,Klaus Gramann,Tzyy-Ping Jung,Li-Wei Ko,Jyh-Yeong Chang
#t2012
#cProceedings of the IEEE
#index3381980
#% 
#!
  
#*Electric Power and Energy Engineering: The First Century.
#@Gerald Thomas Heydt,Rajapandian Ayyanar,Kory W. Hedman,Vijay Vittal
#t2012
#cProceedings of the IEEE
#index3381973
#% 
#!
  
#*Welcome to Our Centennial Celebration Issue!
#@Robert Trew
#t2012
#cProceedings of the IEEE
#index3382028
#% 
#!
  
#*A Centennial Review of Style and Contents in the Proceedings of the IEEE [Point of View].
#@Hazel Sales
#t2012
#cProceedings of the IEEE
#index3382022
#% 
#!
  
#*Large-Scale Situation Awareness With Camera Networks and Multimodal Sensing.
#@Umakishore Ramachandran,Kirak Hong,Liviu Iftode,Ramesh Jain,Rajnish Kumar,Kurt Rothermel,JunSuk Shin,Raghupathy Sivakumar
#t2012
#cProceedings of the IEEE
#index3381986
#% 
#!
  
#*Spectrum Policy for Radio Spectrum Access.
#@Michael J. Marcus
#t2012
#cProceedings of the IEEE
#index3382029
#% 
#!
  
#*CMOS and Memristor-Based Neural Network Design for Position Detection.
#@Idongesit E. Ebong,Pinaki Mazumder
#t2012
#cProceedings of the IEEE
#index3381943
#% 
#!
  
#*Prolog to the Section on Radio Spectrum Access.
#@Andreas Weisshaar,Andrew Clegg
#t2012
#cProceedings of the IEEE
#index3381936
#% 
#!
  
#*Haptic Communications.
#@Eckehard G. Steinbach,Sandra Hirche,Marc Ernst,Fernanda Brandi,Rahul Gopal Chaudhari,Julius Kammerl,Iason Vittorias
#t2012
#cProceedings of the IEEE
#index3381988
#% 
#!
  
#*Proceedings of the IEEE Through 100 Years: 1940-1949.
#@
#t2012
#cProceedings of the IEEE
#index3382043
#% 
#!
  
#*The Future of Cloud-Based Entertainment.
#@Kilroy Hughes
#t2012
#cProceedings of the IEEE
#index3381994
#% 
#!
  
#*Digital Pathology: Data-Intensive Frontier in Medical Imaging.
#@Lee A. D. Cooper,Alexis B. Carter,Alton B. Farris,Fusheng Wang,Jun Kong,David A. Gutman,Patrick M. Widener,Tony C. Pan,Sharath R. Cholleti,Ashish Sharma,Tahsin M. Kurç,Daniel J. Brat,Joel H. Saltz
#t2012
#cProceedings of the IEEE
#index3381965
#% 
#!
  
#*The History of Web Archiving.
#@Masashi Toyoda,Masaru Kitsuregawa
#t2012
#cProceedings of the IEEE
#index3382000
#% 
#!
  
#*The History of Storage Systems.
#@Kazuo Goda,Masaru Kitsuregawa
#t2012
#cProceedings of the IEEE
#index3381979
#% 
#!
  
#*Prolog to the Section on Electric Power and Energy Engineering.
#@Gerald Thomas Heydt,Rajapandian Ayyanar,Kory W. Hedman,Vijay Vittal
#t2012
#cProceedings of the IEEE
#index3382050
#% 
#!
  
#*Using Socially Assistive Human-Robot Interaction to Motivate Physical Exercise for Older Adults.
#@Juan Fasola,Maja J. Mataric
#t2012
#cProceedings of the IEEE
#index3469921
#% 
#!
  
#*Printed Slot and Wire Antennas: A Review.
#@Hisamatsu Nakano,Junji Yamauchi
#t2012
#cProceedings of the IEEE
#index3469933
#% 
#!
  
#*Small Antennas in Wireless Communications.
#@Hang Wong,Kwai-Man Luk,Chi Hou Chan,Quan Xue,Kwok Kan So,Hau Wah Lai
#t2012
#cProceedings of the IEEE
#index3469952
#% 
#!
  
#*Integration of Array Antennas in Chip Package for 60-GHz Radios.
#@Duixian Liu,Y. P. Zhang
#t2012
#cProceedings of the IEEE
#index3469912
#% 
#!
  
#*Remote Sensing of Volcanic Hazards and Their Precursors.
#@Andrew Hooper,Fred Prata,Freysteinn Sigmundsson
#t2012
#cProceedings of the IEEE
#index3469947
#% 
#!
  
#*Design of Antennas for UHF RFID Tags.
#@Etienne Perret,Smail Tedjini,Raji Sasidharan Nair
#t2012
#cProceedings of the IEEE
#index3469927
#% 
#!
  
#*Personal Mobility and Manipulation Appliance - Design, Development, and Initial Testing.
#@Rory A. Cooper,Garrett Grindle,Juan Jose Vazquez Lopez,Jijie Xu,Hongwu Wang,J. Candiotti,C. Chung,Ben Salatin,E. Houston,Annmarie Kelleher,Rory A. Cooper,E. Teodorski,S. Beach
#t2012
#cProceedings of the IEEE
#index3469938
#% 
#!
  
#*A Computationally Efficient Technique for Prototyping Planar Antennas and Printed Circuits for Wireless Applications.
#@Raj Mittra,Giacomo Bianconi,Chiara Pelletti,Kai Du,Simone Genovesi,Agostino Monorchio
#t2012
#cProceedings of the IEEE
#index3469899
#% 
#!
  
#*Antennas for Digital Television Receivers in Mobile Terminals.
#@Pertti Vainikainen,Jari Holopainen,Mikko Kyrö
#t2012
#cProceedings of the IEEE
#index3469920
#% 
#!
  
#*Antenna Requirements for Software Defined and Cognitive Radios.
#@Peter S. Hall,Peter Gardner,Antonio Faraone
#t2012
#cProceedings of the IEEE
#index3469961
#% 
#!
  
#*Antennas in Wireless Communications [Scanning the Issue].
#@Kwai-Man Luk,Kai Fong Lee
#t2012
#cProceedings of the IEEE
#index3469913
#% 
#!
  
#*Disaster Monitoring by Fully Polarimetric SAR Data Acquired With ALOS-PALSAR.
#@Yoshio Yamaguchi
#t2012
#cProceedings of the IEEE
#index3469932
#% 
#!
  
#*Musing on the Past 60 Years in Electrical Engineering Education.
#@C. Sidney Burrus
#t2012
#cProceedings of the IEEE
#index3469939
#% 
#!
  
#*Quality of Life Technology.
#@Takeo Kanade
#t2012
#cProceedings of the IEEE
#index3469960
#% 
#!
  
#*Dielectric Resonator Antennas: From the Basic to the Aesthetic.
#@Kwok Wa Leung,Eng Hock Lim,Xiao Sheng Fang
#t2012
#cProceedings of the IEEE
#index3469915
#% 
#!
  
#*GEOSS-Based Thermal Parameters Analysis for Earthquake Anomaly Recognition.
#@Li-xin Wu,Kai Qin,Shan-jun Liu
#t2012
#cProceedings of the IEEE
#index3469906
#% 
#!
  
#*First-Person Vision.
#@Takeo Kanade,Martial Hebert
#t2012
#cProceedings of the IEEE
#index3469924
#% 
#!
  
#*Proceedings of the IEEE Through 100 Years: 1990-1999.
#@
#t2012
#cProceedings of the IEEE
#index3469905
#% 
#!
  
#*Recent Advances of Large-Scale Linear Classification.
#@Guo-Xun Yuan,Chia-Hua Ho,Chih-Jen Lin
#t2012
#cProceedings of the IEEE
#index3469946
#% 
#!
  
#*Web-Scale Multimedia Information Networks.
#@Guo-Jun Qi,Min-Hsuan Tsai,Shen-Fu Tsai,Liangliang Cao,Thomas S. Huang
#t2012
#cProceedings of the IEEE
#index3469944
#% 
#!
  
#*Smart Antennas for Advanced Communication Systems.
#@Dau-Chyrh Chang,Cheng-Nan Hu
#t2012
#cProceedings of the IEEE
#index3469963
#% 
#!
  
#*Therapeutic Seal Robot as Biofeedback Medical Device: Qualitative and Quantitative Evaluations of Robot Therapy in Dementia Care.
#@Takanori Shibata
#t2012
#cProceedings of the IEEE
#index3469953
#% 
#!
  
#*Remote Sensing of Natural Disasters.
#@Kun-Shan Chen,Sebastiano B. Serpico,James A. Smith
#t2012
#cProceedings of the IEEE
#index3469954
#% 
#!
  
#*Substrate-Integrated Millimeter-Wave and Terahertz Antenna Technology.
#@Ke Wu,Yujian Cheng,Tarek Djerafi,Wei Hong
#t2012
#cProceedings of the IEEE
#index3469935
#% 
#!
  
#*The Magnetoelectric Dipole - A Wideband Antenna for Base Stations in Mobile Communications.
#@Kwai-Man Luk,Biqun Wu
#t2012
#cProceedings of the IEEE
#index3469904
#% 
#!
  
#*Designing and Evaluating Quality of Life Technologies: An Interdisciplinary Approach.
#@Richard Schulz,Scott R. Beach,Judith T. Matthews,Karen L. Courtney,Annette J. De Vito Dabbs
#t2012
#cProceedings of the IEEE
#index3469916
#% 
#!
  
#*Robust and Scalable Graph-Based Semisupervised Learning.
#@Wei Liu,Jun Wang,Shih-Fu Chang
#t2012
#cProceedings of the IEEE
#index3469914
#% 
#!
  
#*Cognitive Dynamic Systems: Radar, Control, and Radio [Point of View].
#@Simon Haykin
#t2012
#cProceedings of the IEEE
#index3469955
#% 
#!
  
#*Leaky-Wave Antennas.
#@David R. Jackson,Christophe Caloz,Tatsuo Itoh
#t2012
#cProceedings of the IEEE
#index3469962
#% 
#!
  
#*Cognition-Enabled Autonomous Robot Control for the Realization of Home Chore Task Intelligence.
#@Michael Beetz,Dominik Jain,Lorenz Mösenlechner,Moritz Tenorth,Lars Kunze,Nico Blodow,Dejan Pangercic
#t2012
#cProceedings of the IEEE
#index3469925
#% 
#!
  
#*Microstrip Patch Antennas - Basic Characteristics and Some Recent Advances.
#@Kai-Fong Lee,Kin-Fai Tong
#t2012
#cProceedings of the IEEE
#index3469922
#% 
#!
  
#*Web-Scale Multimedia Processing and Applications [Scanning the Issue].
#@Edward Y. Chang,Shih-Fu Chang,Alexander G. Hauptmann,Thomas S. Huang,Malcolm Slaney
#t2012
#cProceedings of the IEEE
#index3469943
#% 
#!
  
#*Antenna Concepts for Millimeter-Wave Automotive Radar Sensors.
#@Wolfgang Menzel,Arnold Moebius
#t2012
#cProceedings of the IEEE
#index3469903
#% 
#!
  
#*Multimedia Semantics: Interactions Between Content and Community.
#@Hari Sundaram,Lexing Xie,Munmun De Choudhury,Yu-Ru Lin,Apostol Natsev
#t2012
#cProceedings of the IEEE
#index3469934
#% 
#!
  
#*Antennas for WiFi Connectivity.
#@Zhi Ning Chen,Xianming Qing,Terence Shie Ping See,Wee Kian Toh
#t2012
#cProceedings of the IEEE
#index3469945
#% 
#!
  
#*UWB Antennas for Communication Systems.
#@Grzegorz Adamiuk,Thomas Zwick,Werner Wiesbeck
#t2012
#cProceedings of the IEEE
#index3469956
#% 
#!
  
#*Human Sensor Networks for Improved Modeling of Natural Disasters.
#@Oleg Aulov,Milton Halem
#t2012
#cProceedings of the IEEE
#index3469917
#% 
#!
  
#*Reconfigurable Antennas for Wireless and Space Applications.
#@Christos G. Christodoulou,Youssef Tawk,Steven A. Lane,Scott R. Erwin
#t2012
#cProceedings of the IEEE
#index3469937
#% 
#!
  
#*Architecture and Applications of Virtual Coaches.
#@Daniel P. Siewiorek,Asim Smailagic,Anind Dey
#t2012
#cProceedings of the IEEE
#index3469964
#% 
#!
  
#*OTA Testing in Multipath of Antennas and Wireless Devices With MIMO and OFDM.
#@Per-Simon Kildal,Charlie Orlenius,Jan Carlsson
#t2012
#cProceedings of the IEEE
#index3469942
#% 
#!
  
#*Supporting and Enabling Circuits for Antenna Arrays in Wireless Communications.
#@Ada S. Y. Poon,Mazhareddin Taghivand
#t2012
#cProceedings of the IEEE
#index3469923
#% 
#!
  
#*A Framework for Classifier Adaptation for Large-Scale Multimedia Data.
#@Jun Yang,Wei Tong,Alexander G. Hauptmann
#t2012
#cProceedings of the IEEE
#index3469902
#% 
#!
  
#*Mapping Geo-Hazard by Satellite Radar Interferometry.
#@Wen-Yen Chang,Chih-Tien Wang,Chih-Yuan Chu,Jyun-Ru Kao
#t2012
#cProceedings of the IEEE
#index3469957
#% 
#!
  
#*Social Network Analysis in Enterprise.
#@Ching-Yung Lin,Lynn Wu,Zhen Wen,Hanghang Tong,Vicky Griffiths-Fisher,Lei Shi,David Lubensky
#t2012
#cProceedings of the IEEE
#index3469909
#% 
#!
  
#*Herb 2.0: Lessons Learned From Developing a Mobile Manipulator for the Home.
#@Siddhartha S. Srinivasa,Dmitry Berenson,Maya Cakmak,Alvaro Collet,Mehmet Remzi Dogar,Anca D. Dragan,Ross A. Knepper,Tim Niemueller,Kyle Strabala,Michael Vande Weghe,Julius Ziegler
#t2012
#cProceedings of the IEEE
#index3469910
#% 
#!
  
#*Home-Assistant Robot for an Aging Society.
#@Kimitoshi Yamazaki,Ryohei Ueda,Shunichi Nozawa,Mitsuharu Kojima,Kei Okada,Kiyoshi Matsumoto,Masaru Ishikawa,Isao Shimoyama,Masayuki Inaba
#t2012
#cProceedings of the IEEE
#index3469936
#% 
#!
  
#*Toward an Ecosystem for Developing and Programming Assistive Environments.
#@Sumi Helal,Chao Chen,Eunju Kim,Raja Bose,Choonhwa Lee
#t2012
#cProceedings of the IEEE
#index3469919
#% 
#!
  
#*Duplicate-Search-Based Image Annotation Using Web-Scale Data.
#@Xin-Jing Wang,Lei Zhang,Wei-Ying Ma
#t2012
#cProceedings of the IEEE
#index3469928
#% 
#!
  
#*Uncertainty Reduction for Knowledge Discovery and Information Extraction on the World Wide Web.
#@Heng Ji,Hongbo Deng,Jiawei Han
#t2012
#cProceedings of the IEEE
#index3469900
#% 
#!
  
#*Antennas for Global Navigation Satellite System (GNSS).
#@Johnson J. H. Wang
#t2012
#cProceedings of the IEEE
#index3469949
#% 
#!
  
#*Back to the Future [Point of View].
#@Alan V. Oppenheim
#t2012
#cProceedings of the IEEE
#index3469950
#% 
#!
  
#*Optimal Parameters for Locality-Sensitive Hashing.
#@Malcolm Slaney,Yury Lifshits,Junfeng He
#t2012
#cProceedings of the IEEE
#index3469918
#% 
#!
  
#*Universal Design for Quality of Life Technologies.
#@Edward Steinfeld,Roger O. Smith
#t2012
#cProceedings of the IEEE
#index3469931
#% 
#!
  
#*Remote Sensing and Earthquake Damage Assessment: Experiences, Limits, and Perspectives.
#@Fabio Dell'Acqua,Paolo Gamba
#t2012
#cProceedings of the IEEE
#index3469901
#% 
#!
  
#*Information Extraction From Remote Sensing Images for Flood Monitoring and Damage Evaluation.
#@Sebastiano B. Serpico,Silvana G. Dellepiane,Giorgio Boni,Gabriele Moser,Elena Angiati,Roberto Rudari
#t2012
#cProceedings of the IEEE
#index3469908
#% 
#!
  
#*Statistical Entity Extraction From the Web.
#@Zaiqing Nie,Ji-Rong Wen,Wei-Ying Ma
#t2012
#cProceedings of the IEEE
#index3469940
#% 
#!
  
#*Polarimetric SAR Analysis of Tsunami Damage Following the March 11, 2011 East Japan Earthquake.
#@Motoyuki Sato,Si-Wei Chen,Makoto Satake
#t2012
#cProceedings of the IEEE
#index3469959
#% 
#!
  
#*Antennas in Cellular Phones for Mobile Communications.
#@Zhinong Ying
#t2012
#cProceedings of the IEEE
#index3469911
#% 
#!
  
#*The Solution Looking for a Problem.
#@Elsa Garmire
#t2012
#cProceedings of the IEEE
#index3469929
#% 
#!
  
#*Web-Scale Media Recommendation Systems.
#@Gideon Dror,Noam Koenigstein,Yehuda Koren
#t2012
#cProceedings of the IEEE
#index3469951
#% 
#!
  
#*Nature-Inspired Optimization Techniques in Communication Antenna Designs.
#@Yahya Rahmat-Samii,Joshua M. Kovitz,Harish Rajagopalan
#t2012
#cProceedings of the IEEE
#index3469941
#% 
#!
  
#*Metamaterial-Based Antennas.
#@Yuandan Dong,Tatsuo Itoh
#t2012
#cProceedings of the IEEE
#index3469930
#% 
#!
  
#*ASTER Satellite Observations for International Disaster Management.
#@Kenneth A. Duda,Michael Abrams
#t2012
#cProceedings of the IEEE
#index3469958
#% 
#!
  
#*Evaluations of Body-Centric Wireless Communication Channels in a Range From 3 MHz to 3 GHz.
#@Koichi Ito,Nozomi Haga,Masaharu Takahashi,Kazuyuki Saito
#t2012
#cProceedings of the IEEE
#index3469898
#% 
#!
  
#*Remote Sensing Contributions to Prediction and Risk Assessment of Natural Disasters Caused by Large-Scale Rift Valley Fever Outbreaks.
#@Assaf Anyamba,Kenneth J. Linthicum,Jennifer Small,Seth C. Britch,Compton J. Tucker
#t2012
#cProceedings of the IEEE
#index3469926
#% 
#!
  
#*Remote Sensing of Ocean Oil-Spill Pollution.
#@Anne H. Schistad Solberg
#t2012
#cProceedings of the IEEE
#index3469948
#% 
#!
  
#*Proceedings of the IEEE Through 100 Years: 1960-1969 [Scanning our Past].
#@
#t2012
#cProceedings of the IEEE
#index3469907
#% 
#!
  
#*Wedge Optics in Flat Panel Displays.
#@Adrian R. L. Travis,Timothy A. Large,Neil Emerton,Steven Bathiche
#t2013
#cProceedings of the IEEE
#index3593433
#% 
#!
  
#*Three-Dimensional Imaging for Creating Real-World-Like Environments.
#@Jung-Young Son,Wook-Ho Son,Sung-Kyu Kim,Kwang-Hoon Lee,Bahram Javidi
#t2013
#cProceedings of the IEEE
#index3593423
#% 
#!
  
#*Scalable Resolution Display Walls.
#@Jason Leigh,Andrew E. Johnson,Luc Renambot,Tom Peterka,Byungil Jeong,Daniel J. Sandin,Jonas Talandis,Ratko Jagodic,Sungwon Nam,Hyejung Hur,Yiwen Sun
#t2013
#cProceedings of the IEEE
#index3593422
#% 
#!
  
#*Changing of the Guard [Point of View].
#@Robert Trew
#t2013
#cProceedings of the IEEE
#index3593435
#% 
#!
  
#*"Beyond HDTV" [Scanning the Issue].
#@Fumio Okano,Wendy L. Aylsworth,Ralf Schafer,Paul J. Hearty
#t2013
#cProceedings of the IEEE
#index3593426
#% 
#!
  
#*8K Extremely-High-Resolution Camera Systems.
#@Takayuki Yamashita,Kohji Mitani
#t2013
#cProceedings of the IEEE
#index3593432
#% 
#!
  
#*Digital Cinema and Super-High-Definition Content Distribution on Optical High-Speed Networks.
#@Tatsuya Fujii,Daisuke Shirai,Yoshihide Tonomura,Masahiko Kitamura,Takayuki Nakachi,Tomoko Sawabe,Masanori Ogawara,Takahiro Yamaguchi,Mitsuru Nomura,Kazuhiro Shirakawa
#t2013
#cProceedings of the IEEE
#index3593424
#% 
#!
  
#*UHDTV Image Format for Better Visual Experience.
#@Masayuki Sugawara,Kenichiro Masaoka
#t2013
#cProceedings of the IEEE
#index3593429
#% 
#!
  
#*Overview of Large-Scale Computing: The Past, the Present, and the Future.
#@Weng Cho Chew,Lijun Jiang
#t2013
#cProceedings of the IEEE
#index3619440
#% 
#!
  
#*The Motivation and Technique of Writing Scientific Contributions [Point of View].
#@Laszlo Solymar
#t2013
#cProceedings of the IEEE
#index3619437
#% 
#!
  
#*Analyzing Large-Scale Arrays Using Tangential Equivalence Principle Algorithm With Characteristic Basis Functions.
#@Hanru Shao,Jun Hu,Wenchun Lu,Han Guo,Zaiping Nie
#t2013
#cProceedings of the IEEE
#index3619424
#% 
#!
  
#*Hierarchical Parallelization of the Multilevel Fast Multipole Algorithm (MLFMA).
#@Levent Gürel,?zgür Ergül
#t2013
#cProceedings of the IEEE
#index3619432
#% 
#!
  
#*Quasi-Block-Cholesky Factorization With Dynamic Matrix Compression for Fast Integral-Equation Simulations of Large-Scale Human Body Models.
#@Shumin Wang
#t2013
#cProceedings of the IEEE
#index3619429
#% 
#!
  
#*Nonconformal Domain Decomposition Methods for Solving Large Multiscale Electromagnetic Scattering Problems.
#@Zhen Peng,Kheng-Hwee Lim,Jin-Fa Lee
#t2013
#cProceedings of the IEEE
#index3619420
#% 
#!
  
#*Accurate Solutions of Extremely Large Integral-Equation Problems in Computational Electromagnetics.
#@?zgür Ergül,Levent Gürel
#t2013
#cProceedings of the IEEE
#index3619423
#% 
#!
  
#*Fluctuation-Induced Phenomena in Nanoscale Systems: Harnessing the Power of Noise.
#@M. T. Homer Reid,Alejandro W. Rodriguez,Steven G. Johnson
#t2013
#cProceedings of the IEEE
#index3619426
#% 
#!
  
#*Spectral Methods and Domain Decomposition for Nanophotonic Applications.
#@Ma Luo,Yun Lin,Qing Huo Liu
#t2013
#cProceedings of the IEEE
#index3619419
#% 
#!
  
#*Electromagnetic Computation in Scattering of Electromagnetic Waves by Random Rough Surface and Dense Media in Microwave Remote Sensing of Land Surfaces.
#@Leung Tsang,Kung-Hau Ding,Shaowu Huang,Xiaolan Xu
#t2013
#cProceedings of the IEEE
#index3619422
#% 
#!
  
#*Direct Matrix Solution of Linear Complexity for Surface Integral-Equation-Based Impedance Extraction of Complicated 3-D Structures.
#@Wenwen Chai,Dan Jiao
#t2013
#cProceedings of the IEEE
#index3619425
#% 
#!
  
#*MLFMA-FFT Parallel Algorithm for the Solution of Extremely Large Problems in Electromagnetics.
#@Jose Manuel Taboada,Marta G. Araujo,Fernando Obelleiro Basteiro,Jose Luis Rodriguez,Luis Landesa
#t2013
#cProceedings of the IEEE
#index3619439
#% 
#!
  
#*Water Bridges in Electropermeabilized Phospholipid Bilayers.
#@P. Thomas Vernier,Zachary A. Levine,Martin A. Gundersen
#t2013
#cProceedings of the IEEE
#index3619438
#% 
#!
  
#*Skin-Effect Loss Models for Time- and Frequency-Domain PEEC Solver.
#@Albert E. Ruehli,Giulio Antonini,Lijun Jiang
#t2013
#cProceedings of the IEEE
#index3619421
#% 
#!
  
#*Early Punched Card Equipment: 1880-1951 [Scanning Our Past].
#@Emerson W. Pugh,Lars Heide
#t2013
#cProceedings of the IEEE
#index3619428
#% 
#!
  
#*Modified Phase-Extracted Basis Functions for Efficient Analysis of Scattering From Electrically Large Targets.
#@Zaiping Nie,Si Ren,Su Yan,Shiquan He,Jun Hu
#t2013
#cProceedings of the IEEE
#index3619435
#% 
#!
  
#*Accelerated Direct Solution of the Method-of-Moments Linear System.
#@Alexander Heldring,José Maria Tamayo,Eduard Ubeda,Juan M. Rius
#t2013
#cProceedings of the IEEE
#index3619442
#% 
#!
  
#*Transport-Based Biophysical System Models of Cells for Quantitatively Describing Responses to Electric Fields.
#@Thiruvallur R. Gowrishankar,Kyle C. Smith,James C. Weaver
#t2013
#cProceedings of the IEEE
#index3619441
#% 
#!
  
#*Highly Tailored Computational Electromagnetics Methods for Nanophotonic Design and Discovery.
#@Victor Liu,David A. B. Miller,Shanhui Fan
#t2013
#cProceedings of the IEEE
#index3619427
#% 
#!
  
#*Large-Scale Electromagnetic Computation for Modeling and Applications [Scanning the Issue].
#@Qing Huo Liu,Lijun Jiang,Weng Cho Chew
#t2013
#cProceedings of the IEEE
#index3619436
#% 
#!
  
#*Electromagnetic Field Theory in $(N+1)$ -Space-Time: A Modern Time-Domain Tensor/Array Introduction.
#@Adrianus T. de Hoop
#t2013
#cProceedings of the IEEE
#index3619430
#% 
#!
  
#*Discontinuous Galerkin Time-Domain Methods for Multiscale Electromagnetic Simulations: A Review.
#@Jiefu Chen,Qing Huo Liu
#t2013
#cProceedings of the IEEE
#index3619444
#% 
#!
  
#*Hierarchical Matrix Preconditioning for Low-Frequency-Full-Maxwell Simulations.
#@Mario Bebendorf,Florian Kramer
#t2013
#cProceedings of the IEEE
#index3619433
#% 
#!
  
#*Hybrid Iterative Approach Combined With Domain Decomposition for the Analysis of Large Electromagnetic Problems.
#@Carlos Delgado,Eliseo García,Manuel Felipe Cátedra
#t2013
#cProceedings of the IEEE
#index3619434
#% 
#!
  
#*Quantum Transport Modeling From First Principles.
#@Jesse Maassen,Mohammed Harb,Vincent Michaud-Rioux,Yu Zhu,Hong Guo
#t2013
#cProceedings of the IEEE
#index3619443
#% 
#!
  
#*Integration of Antennas Onboard Vehicles and Diffraction by Large and Complex Structures With Multiple-Domain-Multiple-Methods Techniques.
#@André Barka
#t2013
#cProceedings of the IEEE
#index3619431
#% 
#!
  
#*Point Target Classification via Fast Lossless and Sufficient $\Omega$-$\Psi$ -$\Phi$ Invariant Decomposition of High-Resolution and Fully Polarimetric SAR/ISAR Data.
#@Riccardo Paladini,Laurent Ferro-Famil,Eric Pottier,Marco Martorella,Fabrizio Berizzi,Enzo Dalle Mese
#t2013
#cProceedings of the IEEE
#index3652795
#% 
#!
  
#*Advances in Very-High-Resolution Remote Sensing [Scanning the Issue].
#@Jon Atli Benediktsson,Jocelyn Chanussot,Wooil M. Moon
#t2013
#cProceedings of the IEEE
#index3652788
#% 
#!
  
#*Airborne SAR-Efficient Signal Processing for Very High Resolution.
#@Hubert M. J. Cantalloube,Carole E. Nahum
#t2013
#cProceedings of the IEEE
#index3652789
#% 
#!
  
#*The Promise of Reconfigurable Computing for Hyperspectral Imaging Onboard Systems: A Review and Trends.
#@Sebastián López,Tanya Vladimirova,Carlos González,Javier Resano,Daniel Mozos,Antonio Plaza
#t2013
#cProceedings of the IEEE
#index3652794
#% 
#!
  
#*Electromagnetic Tomography for Medical and Industrial Applications: Challenges and Opportunities [Point of View].
#@H.-Y. Wei,M. Soleimani
#t2013
#cProceedings of the IEEE
#index3652779
#% 
#!
  
#*Feature Mining for Hyperspectral Image Classification.
#@Xiuping Jia,Bor-Chen Kuo,Melba M. Crawford
#t2013
#cProceedings of the IEEE
#index3652793
#% 
#!
  
#*Land-Cover Mapping by Markov Modeling of Spatial-Contextual Information in Very-High-Resolution Remote Sensing Images.
#@Gabriele Moser,Sebastiano B. Serpico,Jon Atli Benediktsson
#t2013
#cProceedings of the IEEE
#index3652792
#% 
#!
  
#*Differential Analyzers [Scanning Our Past].
#@Michael R. Williams
#t2013
#cProceedings of the IEEE
#index3652781
#% 
#!
  
#*Using High-Resolution Airborne and Satellite Imagery to Assess Crop Growth and Yield Variability for Precision Agriculture.
#@Chenghai Yang,James H. Everitt,Qian Du,Bin Luo,Jocelyn Chanussot
#t2013
#cProceedings of the IEEE
#index3652780
#% 
#!
  
#*A Novel Framework for the Design of Change-Detection Systems for Very-High-Resolution Remote Sensing Images.
#@Lorenzo Bruzzone,Francesca Bovolo
#t2013
#cProceedings of the IEEE
#index3652784
#% 
#!
  
#*Human Settlements: A Global Challenge for EO Data Processing and Interpretation.
#@Paolo Gamba
#t2013
#cProceedings of the IEEE
#index3652791
#% 
#!
  
#*Monitoring of the March 11, 2011, Off-Tohoku 9.0 Earthquake With Super-Tsunami Disaster by Implementing Fully Polarimetric High-Resolution POLSAR Techniques.
#@Gulab Singh,Yoshio Yamaguchi,Wolfgang-Martin Boerner,Sang-Eun Park
#t2013
#cProceedings of the IEEE
#index3652790
#% 
#!
  
#*Advances in Spectral-Spatial Classification of Hyperspectral Images.
#@Mathieu Fauvel,Yuliya Tarabalka,Jon Atli Benediktsson,Jocelyn Chanussot,James C. Tilton
#t2013
#cProceedings of the IEEE
#index3652785
#% 
#!
  
#*Processing Multidimensional SAR and Hyperspectral Images With Binary Partition Tree.
#@Alberto Alonso-González,Silvia Valero,Jocelyn Chanussot,Carlos López-Martínez,Philippe Salembier
#t2013
#cProceedings of the IEEE
#index3652783
#% 
#!
  
#*Melt Pond Mapping With High-Resolution SAR: The First View.
#@Duk-jin Kim,Byong Jun Hwang,Kyung Ho Chung,Sang Hoon Lee,Hyung-Sup Jung,Wooil M. Moon
#t2013
#cProceedings of the IEEE
#index3652786
#% 
#!
  
#*Very-High-Resolution Airborne Synthetic Aperture Radar Imaging: Signal Processing and Applications.
#@Andreas Reigber,Rolf Scheiber,Marc J?ger,Pau Prats-Iraola,Irena Hajnsek,Thomas Jagdhuber,Konstantinos P. Papathanassiou,Matteo Nannini,Esteban Aguilera,Stefan V. Baumgartner,Ralf Horn,Anton Nottensteiner,Alberto Moreira
#t2013
#cProceedings of the IEEE
#index3652782
#% 
#!
  
#*Active Learning: Any Value for Classification of Remotely Sensed Data?
#@Melba M. Crawford,Devis Tuia,Hsiuhan Lexie Yang
#t2013
#cProceedings of the IEEE
#index3652787
#% 
#!
  
#*MEDS and PocR are novel domains with a predicted role in sensing simple hydrocarbon derivatives in prokaryotic signal transduction systems.
#@Vivek Anantharaman,L. Aravind
#t2005
#cBioinformatics
#index762642
#% 
#!
  
#*Aligning gene expression time series with time warping algorithms.
#@John Aach,George M. Church
#t2001
#cBioinformatics
#index762643
#% 
#!
  
#*Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum.
#@Markus Anderle II,Sushmita Roy,Hua Lin,Christopher Becker,Keith Joho
#t2004
#cBioinformatics
#index762644
#% 
#!
  
#*Quantifying optimal accuracy of local primary sequence bioinformatics methods.
#@Daniel P. Aalberts,Eric G. Daub,Jesse W. Dill
#t2005
#cBioinformatics
#index762645
#% 
#!
  
#*Microarray data assembler.
#@Ramswamy Anbazhagan
#t2003
#cBioinformatics
#index762646
#% 
#!
  
#*Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences.
#@Faisal Ababneh,Lars S. Jermiin,Chunsheng Ma,John Robinson
#t2006
#cBioinformatics
#index762647
#% 
#!
  
#*Searching DNA databases for similarities to DNA sequences: when is a match significant?
#@I. Anderson,A. Brass
#t1998
#cBioinformatics
#index762648
#% 
#!
  
#*Building chromosome-wide LD maps.
#@María M. Abad-Grau,Rosana Montes,Paola Sebastiani
#t2006
#cBioinformatics
#index762649
#% 
#!
  
#*Serial SimCoal: A population genetics model for data from multiple populations and points in time.
#@Christian N. K. Anderson,Uma Ramakrishnan,Yvonne L. Chan,Elizabeth A. Hadly
#t2005
#cBioinformatics
#index762650
#% 
#!
  
#*Clustering of proximal sequence space for the identification of protein families.
#@Federico Abascal,Alfonso Valencia
#t2002
#cBioinformatics
#index762651
#% 
#!
  
#*Dual-genome primer design for construction of DNA microarrays.
#@Anders Anderssonn,Rolf Bernander,Peter Nilsson
#t2005
#cBioinformatics
#index762652
#% 
#!
  
#*ProtTest: selection of best-fit models of protein evolution.
#@Federico Abascal,Rafael Zardoya,David Posada
#t2005
#cBioinformatics
#index762653
#% 
#!
  
#*An a posteriori strategy for enhancing gene discovery in anonymous cDNA microarray experiments.
#@R. S. Anderssen,Y. Wu,R. Dolferus,I. Saunders
#t2004
#cBioinformatics
#index762654
#% 
#!
  
#*WebACT - an online companion for the Artemis Comparison Tool.
#@J. C. Abbott,David M. Aanensen,Kim Rutherford,S. Butcher,Brian G. Spratt
#t2005
#cBioinformatics
#index762655
#% 
#!
  
#*Automated genome sequence analysis and annotation.
#@Miguel A. Andrade,N. P. Brown,Christophe Leroy,S. Hörsch,Antoine de Daruvar,C. Reich,A. Franchini,Javier Tamames,Alfonso Valencia,Christos A. Ouzounis,Chris Sander
#t1999
#cBioinformatics
#index762656
#% 
#!
  
#*GOLD-Graphical Overview of Linkage Disequilibrium.
#@Gonçalo R. Abecasis,W. O. C. Cookson
#t2000
#cBioinformatics
#index762659
#% 
#!
  
#*MOSAIC: segmenting multiple aligned DNA sequences.
#@Cécile André,Pierre Vincens,Jean-François Boisvieux,Serge A. Hazout
#t2001
#cBioinformatics
#index762660
#% 
#!
  
#*GRR: graphical representation of relationship errors.
#@Gonçalo R. Abecasis,Stacey S. Cherny,W. O. C. Cookson,Lon R. Cardon
#t2001
#cBioinformatics
#index762661
#% 
#!
  
#*Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families.
#@Miguel A. Andrade,Alfonso Valencia
#t1998
#cBioinformatics
#index762662
#% 
#!
  
#*gff2ps: visualizing genomic annotations.
#@Josep F. Abril,Roderic Guigó
#t2000
#cBioinformatics
#index762663
#% 
#!
  
#*A hint to search for metalloproteins in gene banks.
#@Claudia Andreini,Ivano Bertini,Antonio Rosato
#t2004
#cBioinformatics
#index762664
#% 
#!
  
#*gff2aplot: Plotting sequence comparisons.
#@Josep F. Abril,Roderic Guigó,Thomas Wiehe
#t2003
#cBioinformatics
#index762665
#% 
#!
  
#*Automatic analysis of DNA microarray images using mathematical morphology.
#@Jesús Angulo,Jean Serra
#t2003
#cBioinformatics
#index762666
#% 
#!
  
#*Finding differentially expressed genes for pattern generation.
#@Osman Abul,Reda Alhajj,Faruk Polat,Ken Barker
#t2005
#cBioinformatics
#index762667
#% 
#!
  
#*Neural network input representations that produce accurate consensus sequences from DNA fragment assemblies.
#@Carolyn F. Allex,Jude W. Shavlik,Frederick R. Blattner
#t1999
#cBioinformatics
#index762668
#% 
#!
  
#*TargetFinder: a software for antisense oligonucleotide target site selection based on MAST and secondary structures of target mRNA.
#@Xiaochen Bo,Shengqi Wang
#t2005
#cBioinformatics
#index762669
#% 
#!
  
#*ASIAN: a website for network inference.
#@Sachiyo Aburatani,Kousuke Goto,Shigeru Saito,Masaki Fumoto,Akira Imaizumi,Nobuyoshi Sugaya,Hiroo Murakami,Makihiko Sato,Hiroyuki Toh,Katsuhisa Horimoto
#t2004
#cBioinformatics
#index762670
#% 
#!
  
#*A web portal for classification of expression data using maximal margin linear programming.
#@Alexey V. Antonov,Igor V. Tetko,Volodymyr V. Prokopenko,Denis Kosykh,Hans-Werner Mewes
#t2004
#cBioinformatics
#index762671
#% 
#!
  
#*Friend, an integrated analytical front-end application for bioinformatics.
#@Alexej Abyzov,Mounir Errami,Chesley M. Leslin,Valentin A. Ilyin
#t2005
#cBioinformatics
#index762672
#% 
#!
  
#*Longest Biased Interval and Longest Non-negative Sum Interval.
#@Lloyd Allison
#t2003
#cBioinformatics
#index762673
#% 
#!
  
#*Construction of null statistics in permutation-based multiple testing for multi-factorial microarray experiments.
#@Xin Gao
#t2006
#cBioinformatics
#index762674
#% 
#!
  
#*A computational search for box C/D snoRNA genes in the genome.
#@M. C. Accardo,E. Giordano,S. Riccardo,F. A. Digilio,Giovanni Iazzetti,Raffaele Calogero,M. Furia
#t2004
#cBioinformatics
#index762675
#% 
#!
  
#*Effective dimension reduction methods for tumor classification using gene expression data.
#@A. Antoniadis,S. Lambert-Lacroix,F. Leblanc
#t2003
#cBioinformatics
#index762676
#% 
#!
  
#*The new Virgil database: a service of rich links.
#@Frédéric Achard,Christophe Cussat-Blanc,Eric Viara,Emmanuel Barillot
#t1998
#cBioinformatics
#index762677
#% 
#!
  
#*Optimization models for cancer classification: extracting gene interaction information from microarray expression data.
#@Alexey V. Antonov,Igor V. Tetko,Michael T. Mader,Jan Budczies,Hans-Werner Mewes
#t2004
#cBioinformatics
#index762678
#% 
#!
  
#*GenXref. VI: Automatic generation of links between two heterogeneous databases.
#@Frédéric Achard,Philippe Dessen
#t1998
#cBioinformatics
#index762679
#% 
#!
  
#*CLUSTAG: hierarchical clustering and graph methods for selecting tag SNPs.
#@Sio Iong Ao,Kevin Y. Yip,Michael K. Ng,David Wai-Lok Cheung,Pui-Yee Fong,Ian Melhado,Pak Chung Sham
#t2005
#cBioinformatics
#index762680
#% 
#!
  
#*XML, bioinformatics and data integration.
#@Frédéric Achard,Guy Vaysseix,Emmanuel Barillot
#t2001
#cBioinformatics
#index762681
#% 
#!
  
#*DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.
#@Xun Gu,Kent Vander Velden
#t2002
#cBioinformatics
#index762683
#% 
#!
  
#*Estimation and filtering of potential protein-protein docking positions.
#@Friedrich Ackermann,Grit Herrmann,Stefan Posch,Gerhard Sagerer
#t1998
#cBioinformatics
#index762684
#% 
#!
  
#*A System for Automated Bacterial (genome) Integrated Annotation - SABIA.
#@Luiz G. P. Almeida,Roger F. C. Paixão,Rangel C. Souza,Gisele C. da Costa,Frank J. A. Barrientos,M. Trindade dos Santos,Darcy F. de Almeida,Ana Tereza R. Vasconcelos
#t2004
#cBioinformatics
#index762685
#% 
#!
  
#*CFinder: locating cliques and overlapping modules in biological networks.
#@Balázs Adamcsek,Gergely Palla,Illés J. Farkas,Imre Derényi,Tamás Vicsek
#t2006
#cBioinformatics
#index762686
#% 
#!
  
#*A score matrix to reveal the hidden links in glycans.
#@Kiyoko F. Aoki,Hiroshi Mamitsuka,Tatsuya Akutsu,Minoru Kanehisa
#t2005
#cBioinformatics
#index762687
#% 
#!
  
#*SaRAD: a Simple and Robust Abbreviation Dictionary.
#@Eytan Adar
#t2004
#cBioinformatics
#index762688
#% 
#!
  
#*Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al.
#@Rolf Apweiler,Paul Kersey,Vivien Junker,Amos Bairoch
#t2001
#cBioinformatics
#index762689
#% 
#!
  
#*SUSPECTS: enabling fast and effective prioritization of positional candidates.
#@Euan A. Adie,Richard R. Adams,Kathryn L. Evans,David J. Porteous,Ben S. Pickard
#t2006
#cBioinformatics
#index762690
#% 
#!
  
#*Analysis of genomic sequences by Chaos Game Representation.
#@Jonas S. Almeida,João A. Carriço,António Maretzek,Peter A. Noble,Madilyn Fletcher
#t2001
#cBioinformatics
#index762691
#% 
#!
  
#*A spline function approach for detecting differentially expressed genes in microarray data analysis.
#@Wenqing He
#t2004
#cBioinformatics
#index762692
#% 
#!
  
#*Automatic analysis of agarose gel images.
#@P. S. Umesh Adiga,A. Bhomra,M. G. Turri,A. Nicod,S. R. Datta,Peter Jeavons,Richard Mott,Jonathan Flint
#t2001
#cBioinformatics
#index762693
#% 
#!
  
#*PIANA: protein interactions and network analysis.
#@Ramon Aragues,Daniel Jaeggi,Baldo Oliva
#t2006
#cBioinformatics
#index762694
#% 
#!
  
#*Gene-Ontology-based clustering of gene expression data.
#@Boris Adryan,Reinhard Schuh
#t2004
#cBioinformatics
#index762695
#% 
#!
  
#*Large-scale assessment of the utility of low-resolution protein structures for biochemical function assignment.
#@Adrian K. Arakaki,Yang Zhang,Jeffrey Skolnick
#t2004
#cBioinformatics
#index762696
#% 
#!
  
#*FlyTF: a systematic review of site-specific transcription factors in the fruit fly .
#@Boris Adryan,Sarah A. Teichmann
#t2006
#cBioinformatics
#index762697
#% 
#!
  
#*The MUSC DNA Microarray Database.
#@Gary L. Argraves,Jeremy L. Barth,W. Scott Argraves
#t2003
#cBioinformatics
#index762698
#% 
#!
  
#*A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes.
#@Stein Aerts,Peter Van Loo,Yves Moreau,Bart De Moor
#t2004
#cBioinformatics
#index762699
#% 
#!
  
#*G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining.
#@Kazuharu Arakawa,Koya Mori,Katsuhiko Ikeda,Tatekimi Matsuzaki,Yusuke Kobayashi,Masaru Tomita
#t2003
#cBioinformatics
#index762700
#% 
#!
  
#*Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions.
#@Dmitry A. Afonnikov,Dmitry Yu. Oshchepkov,Nikolay A. Kolchanov
#t2001
#cBioinformatics
#index762701
#% 
#!
  
#*BioMercator: integrating genetic maps and QTL towards discovery of candidate genes.
#@Anne Arcade,Aymeric Labourdette,Matthieu Falque,Brigitte Mangin,Fabien Chardon,Alain Charcosset,Johann Joets
#t2004
#cBioinformatics
#index762704
#% 
#!
  
#*Comparative accuracy of methods for protein sequence similarity search.
#@Pankaj Agarwal,David J. States
#t1998
#cBioinformatics
#index762705
#% 
#!
  
#*SCANMS: adjusting for multiple comparisons in sliding window neutrality tests.
#@David H. Ardell
#t2004
#cBioinformatics
#index762706
#% 
#!
  
#*Using mRNAs lengths to accurately predict the alternatively spliced gene products in .
#@Ritesh Agrawal,Gary D. Stormo
#t2006
#cBioinformatics
#index762707
#% 
#!
  
#*Design of endonuclease restriction sites into primers for PCR cloning.
#@Jianghui Hou
#t2002
#cBioinformatics
#index762709
#% 
#!
  
#*Shifting and scaling patterns from gene expression data.
#@Jesús S. Aguilar-Ruiz
#t2005
#cBioinformatics
#index762710
#% 
#!
  
#*HoSeqI: automated homologous sequence identification in gene family databases.
#@Anne-Muriel Arigon,Guy Perrière,Manolo Gouy
#t2006
#cBioinformatics
#index762711
#% 
#!
  
#*TranScout: prediction of gene expression regulatory proteins from their sequences.
#@Daniel Aguilar,Baldomero Oliva,Francesc X. Avilés,Enrique Querol
#t2002
#cBioinformatics
#index762712
#% 
#!
  
#*How Bayes tests of molecular phylogenies compare with frequentist approaches.
#@Stéphane Aris-Brosou
#t2003
#cBioinformatics
#index762713
#% 
#!
  
#*SNOW: Standard NOmenclature Wizard to help searching for (bio) chemical standardized names.
#@Daniel Aguilar,Baldomero Oliva,Francesc X. Avilés,Enrique Querol
#t2003
#cBioinformatics
#index762714
#% 
#!
  
#*Rapid and selective surveillance of Arabidopsis thaliana genome annotations with Centrifuge.
#@Florence Armand,Philipp Bucher,C. Victor Jongeneel,Edward E. Farmer
#t2005
#cBioinformatics
#index762715
#% 
#!
  
#*NETASA: neural network based prediction of solvent accessibility.
#@Shandar Ahmad,M. Michael Gromiha
#t2002
#cBioinformatics
#index762716
#% 
#!
  
#*Iterative Cluster Analysis of Protein Interaction Data.
#@Vicente Arnau,Sergio Mars,Ignacio Marín
#t2005
#cBioinformatics
#index762717
#% 
#!
  
#*RVP-net: online prediction of real valued accessible surface area of proteins from single sequences.
#@Shandar Ahmad,M. Michael Gromiha,Akinori Sarai
#t2003
#cBioinformatics
#index762718
#% 
#!
  
#*Regional and time-resolved mutation patterns of the human genome.
#@Peter F. Arndt,Terence Hwa
#t2004
#cBioinformatics
#index762719
#% 
#!
  
#*Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information.
#@Shandar Ahmad,M. Michael Gromiha,Akinori Sarai
#t2004
#cBioinformatics
#index762720
#% 
#!
  
#*Identification and measurement of neighbor-dependent nucleotide substitution processes.
#@Peter F. Arndt,Terence Hwa
#t2005
#cBioinformatics
#index762721
#% 
#!
  
#*Unbiased pattern detection in microarray data series.
#@S. E. Ahnert,K. Willbrand,F. C. S. Brown,T. M. A. Fink
#t2006
#cBioinformatics
#index762722
#% 
#!
  
#*The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.
#@Konstantin Arnold,Lorenza Bordoli,Jürgen Kopp,Torsten Schwede
#t2006
#cBioinformatics
#index762723
#% 
#!
  
#*Efficient estimation of emission probabilities in profile hidden Markov models.
#@Virpi Ahola,Tero Aittokallio,Esa Uusipaikka,Mauno Vihinen
#t2003
#cBioinformatics
#index762724
#% 
#!
  
#*InterPreTS: protein Interaction Prediction through Tertiary Structure.
#@Patrick Aloy,Robert B. Russell
#t2003
#cBioinformatics
#index762725
#% 
#!
  
#*The NCTU BioInfo Archive of biological data sets for bioinformatics research and experimentation.
#@Yuh-Jyh Hu
#t2002
#cBioinformatics
#index762726
#% 
#!
  
#*Representation of DNA sequences with virtual potentials and their processing by (SEQREP) Kohonen self-organizing maps.
#@João Aires-de-Sousa,Luisa Aires-de-Sousa
#t2003
#cBioinformatics
#index762727
#% 
#!
  
#*Formalizing concepts of species, sex and developmental stage in anatomical ontologies.
#@J. Stuart Aitken
#t2005
#cBioinformatics
#index762729
#% 
#!
  
#*COBrA: a bio-ontology editor.
#@J. Stuart Aitken,Roman Korf,Bonnie L. Webber,Jonathan Bard
#t2005
#cBioinformatics
#index762731
#% 
#!
  
#*A new approach to sequence comparison: normalized sequence alignment.
#@Abdullah N. Arslan,Ömer Egecioglu,Pavel A. Pevzner
#t2001
#cBioinformatics
#index762732
#%615797
#%438270
#%558773
#%118689
#%1032453
#%1032585
#%559031
#%1033263
#!
  
#*Phylogenetically enhanced statistical tools for RNA structure prediction.
#@Viatcheslav R. Akmaev,Scott T. Kelley,Gary D. Stormo
#t2000
#cBioinformatics
#index762733
#% 
#!
  
#*Reliability analysis of microarray data using fuzzy c-means and normal mixture modeling based classification methods.
#@Musa H. Asyali,Musa Alci
#t2005
#cBioinformatics
#index762734
#% 
#!
  
#*Correction of sequence-based artifacts in serial analysis of gene expression.
#@Viatcheslav R. Akmaev,Clarence J. Wang
#t2004
#cBioinformatics
#index762735
#% 
#!
  
#*Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference.
#@Gautam Altekar,Sandhya Dwarkadas,John P. Huelsenbeck,Fredrik Ronquist
#t2004
#cBioinformatics
#index762736
#% 
#!
  
#*Mining sequence annotation databanks for association patterns.
#@Irena I. Artamonova,Goar Frishman,Mikhail S. Gelfand,Dmitrij Frishman
#t2005
#cBioinformatics
#index762739
#% 
#!
  
#*Inferring qualitative relations in genetic networks and metabolic pathways.
#@Tatsuya Akutsu,Satoru Miyano,Satoru Kuhara
#t2000
#cBioinformatics
#index762740
#% 
#!
  
#*PilZ domain is part of the bacterial c-di-GMP binding protein.
#@Dorit Amikam,Michael Y. Galperin
#t2006
#cBioinformatics
#index762743
#% 
#!
  
#*Mining gene expression data for positive and negative co-regulated gene clusters.
#@Liping Ji,Kian-Lee Tan
#t2004
#cBioinformatics
#index762744
#% 
#!
  
#*FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes.
#@Fátima Al-Shahrour,Ramón Díaz-Uriarte,Joaquín Dopazo
#t2004
#cBioinformatics
#index762745
#% 
#!
  
#*Identifying time-lagged gene clusters using gene expression data.
#@Liping Ji,Kian-Lee Tan
#t2005
#cBioinformatics
#index762747
#% 
#!
  
#*Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information.
#@Fátima Al-Shahrour,Ramón Díaz-Uriarte,Joaquín Dopazo
#t2005
#cBioinformatics
#index762748
#% 
#!
  
#*Detecting cryptically simple protein sequences using the SIMPLE algorithm.
#@M. Mar Albà,Roman A. Laskowski,John M. Hancock
#t2002
#cBioinformatics
#index762750
#% 
#!
  
#*Implicit motif distribution based hybrid computational kernel for sequence classification.
#@Volkan Atalay,Rengül Çetin-Atalay
#t2005
#cBioinformatics
#index762751
#% 
#!
  
#*Conserved network motifs allow protein-protein interaction prediction.
#@István Albert,Réka Albert
#t2004
#cBioinformatics
#index762752
#% 
#!
  
#*Pyranose Oxidase Identified as A Member of the GMC Oxidoreductase Family.
#@Mario Albrecht,Thomas Lengauer
#t2003
#cBioinformatics
#index762754
#% 
#!
  
#*Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence.
#@Mario Albrecht,Thomas Lengauer,Stefan Schreiber
#t2003
#cBioinformatics
#index762756
#% 
#!
  
#*Improved scoring of functional groups from gene expression data by decorrelating GO graph structure.
#@Adrian Alexa,Jörg Rahnenführer,Thomas Lengauer
#t2006
#cBioinformatics
#index762758
#% 
#!
  
#*3DinSight: an integrated relational database and search tool for the structure, function and properties of biomolecules.
#@Jianghong An,T. Nakama,Y. Kubota,Akinori Sarai
#t1998
#cBioinformatics
#index762759
#% 
#!
  
#*TileMap: create chromosomal map of tiling array hybridizations.
#@Hongkai Ji,Wing Hung Wong
#t2005
#cBioinformatics
#index762760
#% 
#!
  
#*Class discovery and classification of tumor samples using mixture modeling of gene expression data - a unified approach.
#@Roxana Alexandridis,Shili Lin,Mark Irwin
#t2004
#cBioinformatics
#index762761
#% 
#!
  
#*Which is better for cDNA-microarray-based classification: ratios or direct intensities.
#@Sanju Attoor,Edward R. Dougherty,Yidong Chen,Michael L. Bittner,Jeffrey M. Trent
#t2004
#cBioinformatics
#index762762
#% 
#!
  
#*PDP: protein domain parser.
#@Nickolai Alexandrov,Ilya N. Shindyalov
#t2003
#cBioinformatics
#index762765
#% 
#!
  
#*SACS-Self-maintaining database of antibody crystal structure information.
#@Lee C. Allcorn,Andrew C. R. Martin
#t2002
#cBioinformatics
#index762767
#% 
#!
  
#*Rapid 3D protein structure database searching using information retrieval techniques.
#@Zeyar Aung,Kian-Lee Tan
#t2004
#cBioinformatics
#index762768
#% 
#!
  
#*JIGSAW: integration of multiple sources of evidence for gene prediction.
#@Jonathan E. Allen,Steven Salzberg
#t2005
#cBioinformatics
#index762769
#% 
#!
  
#*CGH-Plotter: MATLAB toolbox for CGH-data analysis.
#@Reija Autio,Sampsa Hautaniemi,Päivikki Kauraniemi,Olli Yli-Harja,Jaakko Astola,Maija Wolf,Anne Kallioniemi
#t2003
#cBioinformatics
#index762771
#% 
#!
  
#*A curriculum for bioinformatics: the time is ripe.
#@Russ B. Altman
#t1998
#cBioinformatics
#index762772
#% 
#!
  
#*SNAP: Combine and Map modules for multilocus population genetic analysis.
#@David L. Aylor,Eric W. Price,Ignazio Carbone
#t2006
#cBioinformatics
#index762773
#% 
#!
  
#*Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces.
#@A. Selim Aytuna,Attila Gürsoy,Ozlem Keskin
#t2005
#cBioinformatics
#index762775
#% 
#!
  
#*Extending the method of mathematically controlled comparison to include numerical comparisons.
#@Rui Alves,Michael A. Savageau
#t2000
#cBioinformatics
#index762776
#% 
#!
  
#*Effects of choice of DNA sequence model structure on gene identification accuracy.
#@Rajeev K. Azad,Mark Borodovsky
#t2004
#cBioinformatics
#index762777
#% 
#!
  
#*Comparing systemic properties of ensembles of biological networks by graphical and statistical methods.
#@Rui Alves,Michael A. Savageau
#t2000
#cBioinformatics
#index762778
#% 
#!
  
#*A cluster validity framework for genome expression data.
#@Francisco Azuaje
#t2002
#cBioinformatics
#index762779
#% 
#!
  
#*Systemic properties of ensembles of metabolic networks: application of graphical and statistical methods to simple unbranched pathways.
#@Rui Alves,Michael A. Savageau
#t2000
#cBioinformatics
#index762780
#% 
#!
  
#*Integrative data analysis for functional prediction: a multi-objective optimization approach.
#@Francisco Azuaje
#t2005
#cBioinformatics
#index762781
#% 
#!
  
#*Robust accurate identification of peptides (RAId): deciphering MS data using a structured library search with based statistics.
#@Gelio Alves,Yi-Kuo Yu
#t2005
#cBioinformatics
#index762782
#% 
#!
  
#*Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues.
#@B. Anand,V. S. Gowri,Narayanaswamy Srinivasan
#t2005
#cBioinformatics
#index762783
#% 
#!
  
#*libSRES: a C library for stochastic ranking evolution strategy for parameter estimation.
#@Xinglai Ji,Ying Xu
#t2006
#cBioinformatics
#index762784
#% 
#!
  
#*A multi-step approach to time series analysis and gene expression clustering.
#@Roberto Amato,Angelo Ciaramella,N. Deniskina,Carmine Del Mondo,Diego di Bernardo,Ciro Donalek,Giuseppe Longo,Giuseppe Mangano,Gennaro Miele,Giancarlo Raiconi,Antonino Staiano,Roberto Tagliaferri
#t2006
#cBioinformatics
#index762785
#% 
#!
  
#*Investigating extended regulatory regions of genomic DNA sequences.
#@Vladimir N. Babenko,P. S. Kosarev,Oleg V. Vishnevsky,Victor G. Levitsky,V. V. Basin,Anatoly S. Frolov
#t1999
#cBioinformatics
#index762786
#% 
#!
  
#*The LCB Data Warehouse.
#@Adam Ameur,Vladimir Yankovski,Stefan Enroth,Ola Spjuth,Henryk Jan Komorowski
#t2006
#cBioinformatics
#index762787
#% 
#!
  
#*PitA: an example of functional interaction between the Pfam chlorite dismutase and antibiotic biosynthesis monooxygenase families?
#@Elizabeta Bab-Dinitz,Hagay Shmuely,Julie Maupin-Furlow,Jerry Eichler,Boaz Shaanan
#t2006
#cBioinformatics
#index762788
#% 
#!
  
#*Frequency-domain analysis of biomolecular sequences.
#@Dimitris Anastassiou
#t2000
#cBioinformatics
#index762789
#% 
#!
  
#*MiGenes: a searchable interspecies database of mitochondrial proteins curated using gene ontology annotation.
#@Siddhartha Basu,Erich Bremer,Chun Zhou,Daniel F. Bogenhagen
#t2006
#cBioinformatics
#index762792
#% 
#!
  
#*InterPro-an integrated documentation resource for protein families, domains and functional sites.
#@Rolf Apweiler,Terri K. Attwood,Amos Bairoch,Alex Bateman,Ewan Birney,Margaret Biswas,Philipp Bucher,Lorenzo Cerutti,Florence Corpet,Michael D. R. Croning,Richard Durbin,Laurent Falquet,Wolfgang Fleischmann,Jérôme Gouzy,Henning Hermjakob,Nicolas Hulo,Inge Jonassen,Daniel Kahn,Alexander Kanapin,Youla Karavidopoulou,Rodrigo Lopez,Beate Marx,Nicola J. Mulder,Thomas M. Oinn,Marco Pagni,Florence Servant,Christian J. A. Sigrist,Evgeni M. Zdobnov
#t2000
#cBioinformatics
#index762793
#% 
#!
  
#*Bioinformatics - The new home for protein sequence motifs.
#@Alex Bateman
#t2006
#cBioinformatics
#index762794
#% 
#!
  
#*The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation.
#@Alex Bateman,Matthew T. G. Holden,Corin Yeats
#t2005
#cBioinformatics
#index762796
#% 
#!
  
#*DOLOP-database of bacterial lipoproteins.
#@M. Madan Babu,K. Sankaran
#t2002
#cBioinformatics
#index762797
#% 
#!
  
#*New Leadership for Bioinformatics.
#@Alex Bateman,Alfonso Valencia
#t2004
#cBioinformatics
#index762798
#% 
#!
  
#*PAQ: Partition Analysis of Quasispecies.
#@Prasith Baccam,Robert J. Thompson,Olivier Fedrigo,Susan Carpenter,James L. Cornette
#t2001
#cBioinformatics
#index762799
#% 
#!
  
#*Efficient selective screening of haplotype tag SNPs.
#@Xiayi Ke,Lon R. Cardon
#t2003
#cBioinformatics
#index762801
#% 
#!
  
#*PROF_ PAT 1.3: Updated database of patterns used to detect local similarities.
#@Alexander G. Bachinsky,Anatoly S. Frolov,Andrey N. Naumochkin,Lily Ph. Nizolenko,Andrey A. Yarigin
#t2000
#cBioinformatics
#index762802
#% 
#!
  
#*Significance analysis of functional categories in gene expression studies: a structured permutation approach.
#@William T. Barry,Andrew B. Nobel,Fred A. Wright
#t2005
#cBioinformatics
#index762803
#% 
#!
  
#*Protein ß-turn prediction using nearest-neighbor method.
#@Saejoon Kim
#t2004
#cBioinformatics
#index762804
#% 
#!
  
#*An update from the Editors.
#@Alex Bateman,Alfonso Valencia
#t2005
#cBioinformatics
#index762806
#% 
#!
  
#*Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets.
#@Rolf Backofen,Sebastian Will,Erich Bornberg-Bauer
#t1999
#cBioinformatics
#index762807
#% 
#!
  
#*Progenetix.net: an online repository for molecular cytogenetic aberration data.
#@Michael Baudis,Michael L. Cleary
#t2001
#cBioinformatics
#index762808
#% 
#!
  
#*PRODISTIN Web Site: a tool for the functional classification of proteins from interaction networks.
#@Anaïs Baudot,David Martin,Pierre Mouren,François Chevenet,Alain Guénoche,Bernard Jacq,Marie-Christine Brun
#t2006
#cBioinformatics
#index762810
#% 
#!
  
#*Greedily building protein networks with confidence.
#@Joel S. Bader
#t2003
#cBioinformatics
#index762811
#% 
#!
  
#*Supervised machine learning techniques for the classification of metabolic disorders in newborns.
#@Christian Baumgartner,Christian Böhm,Daniela Baumgartner,G. Marini,Klaus Weinberger,B. Olgemöller,B. Liebl,A. A. Roscher
#t2004
#cBioinformatics
#index762812
#% 
#!
  
#*BIND-a data specification for storing and describing biomolecular interactions, molecular complexes and pathways.
#@Gary D. Bader,Christopher W. V. Hogue
#t2000
#cBioinformatics
#index762813
#% 
#!
  
#*A Bayesian approach to reconstructing genetic regulatory networks with hidden factors.
#@Matthew J. Beal,Francesco Falciani,Zoubin Ghahramani,Claudia Rangel,David L. Wild
#t2005
#cBioinformatics
#index762814
#% 
#!
  
#*Gene selection using a two-level hierarchical Bayesian model.
#@Kyounghwa Bae,Bani K. Mallick
#t2004
#cBioinformatics
#index762815
#% 
#!
  
#*Detection of a tandem BRCT in Nbs1 and Xrs2 with functional implications in the DNA damage response.
#@Emmanuelle Becker,Vincent Meyer,Hocine Madaoui,Raphaël Guérois
#t2006
#cBioinformatics
#index762816
#% 
#!
  
#*Prediction of protein interdomain linker regions by a hidden Markov model.
#@Kyounghwa Bae,Bani K. Mallick,Christine G. Elsik
#t2005
#cBioinformatics
#index762817
#% 
#!
  
#*A graph layout algorithm for drawing metabolic pathways
#@Moritz Y. Becker,Isabel Rojas
#t2001
#cBioinformatics
#index762818
#% 
#!
  
#*Differential expression in SAGE: accounting for normal between-library variation.
#@Keith A. Baggerly,Li Deng,Jeffrey S. Morris,C. Marcelo Aldaz
#t2003
#cBioinformatics
#index762819
#% 
#!
  
#*BBID: the biological biochemical image database.
#@Kevin G. Becker,Shawnte L. White,Jerri Muller,James Engel
#t2000
#cBioinformatics
#index762820
#% 
#!
  
#*Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments.
#@Keith A. Baggerly,Jeffrey S. Morris,Kevin R. Coombes
#t2004
#cBioinformatics
#index762821
#% 
#!
  
#*MaskerAid : a performance enhancement to RepeatMasker.
#@Joseph A. Bedell,Ian Korf,Warren Gish
#t2000
#cBioinformatics
#index762822
#% 
#!
  
#*New algorithms for multi-class cancer diagnosis using tumor gene expression signatures.
#@Adil M. Bagirov,Brent Ferguson,Sasha Ivkovic,G. Saunders,John Yearwood
#t2003
#cBioinformatics
#index762823
#% 
#!
  
#*Mtreemix: a software package for learning and using mixture models of mutagenetic trees.
#@Niko Beerenwinkel,Jörg Rahnenführer,Rolf Kaiser,Daniel Hoffmann,Joachim Selbig,Thomas Lengauer
#t2005
#cBioinformatics
#index762824
#% 
#!
  
#*HumanMSD and MouseMSD: generating genetic maps for human and murine microsatellite markers.
#@M. Bahlo,Lei Xing,C. R. Wilkinson
#t2004
#cBioinformatics
#index762825
#% 
#!
  
#*A word-oriented approach to alignment validation.
#@Robert G. Beiko,Cheong Xin Chan,Mark A. Ragan
#t2005
#cBioinformatics
#index762826
#% 
#!
  
#*Concerning the accuracy of MAST E-values.
#@Timothy L. Bailey,Michael Gribskov
#t2000
#cBioinformatics
#index762827
#% 
#!
  
#*Comparison of Bayesian and maximum-likelihood inference of population genetic parameters.
#@Peter Beerli
#t2006
#cBioinformatics
#index762828
#% 
#!
  
#*Combining evidence using p-values: application to sequence homology searches.
#@Timothy L. Bailey,Michael Gribskov
#t1998
#cBioinformatics
#index762829
#% 
#!
  
#*TEXtopo: shaded membrane protein topology plots in LATEX2.
#@Eric Beitz
#t2000
#cBioinformatics
#index762830
#% 
#!
  
#*TeXshade: shading and labeling of multiple sequence alignments using LaTeX2e.
#@Eric Beitz
#t2000
#cBioinformatics
#index762832
#% 
#!
  
#*Algorithms for variable length Markov chain modeling.
#@Gill Bejerano
#t2004
#cBioinformatics
#index762834
#% 
#!
  
#*Branch and bound computation of exact -values.
#@Gill Bejerano
#t2006
#cBioinformatics
#index762836
#% 
#!
  
#*Markovian domain fingerprinting: statistical segmentation of protein sequences.
#@Gill Bejerano,Yevgeny Seldin,Hanah Margalit,Naftali Tishby
#t2001
#cBioinformatics
#index762838
#% 
#!
  
#*Normalization of microarray data using a spatial mixed model analysis which includes splines.
#@David Baird,Peter Johnstone,Theresa Wilson
#t2004
#cBioinformatics
#index762839
#% 
#!
  
#*Variations on probabilistic suffix trees: statistical modeling and prediction of protein families.
#@Gill Bejerano,Golan Yona
#t2001
#cBioinformatics
#index762840
#% 
#!
  
#*Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times!.
#@Amos Bairoch
#t2000
#cBioinformatics
#index762841
#% 
#!
  
#*Fuzzy J-Means and VNS methods for clustering genes from microarray data.
#@Nabil Belacel,Miroslava Cuperlovic-Culf,Mark Laflamme,Rodney Ouellette
#t2004
#cBioinformatics
#index762842
#% 
#!
  
#*Towards a computational model for -1 eukaryotic frameshifting sites.
#@Michaël Bekaert,Laure Bidou,Alain Denise,Guillemette Duchateau-Nguyen,Jean-Paul Forest,Christine Froidevaux,Isabelle Hatin,Jean-Pierre Rousset,Michel Termier
#t2003
#cBioinformatics
#index762844
#% 
#!
  
#*Flexibility of the genetic code with respect to DNA structure.
#@Pierre-François Baisnée,Pierre Baldi,Søren Brunak,Anders Gorm Pedersen
#t2001
#cBioinformatics
#index762845
#% 
#!
  
#*Why are complementary DNA strands symmetric?
#@Pierre-François Baisnée,Steven Hampson,Pierre Baldi
#t2002
#cBioinformatics
#index762847
#% 
#!
  
#*expa: a program for calculating extreme pathways in biochemical reaction networks.
#@Steven L. Bell,Bernhard O. Palsson
#t2005
#cBioinformatics
#index762848
#% 
#!
  
#*Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters.
#@Vladimir B. Bajic,Seng Hong Seah,Allen Chong,Guanglan Zhang,Judice L. Y. Koh,Vladimir Brusic
#t2002
#cBioinformatics
#index762849
#% 
#!
  
#*ORBIT: an integrated environment for user-customized bioinformatics tools.
#@Matthew I. Bellgard,Hong Liang Hiew,Adam Hunter,Michael Wiebrands
#t1999
#cBioinformatics
#index762850
#% 
#!
  
#*Prokaryotic diversity of the Saccharomyces cerevisiae Atx1p-mediated copper pathway.
#@Harm van Bakel,Martijn A. Huynen,Cisca Wijmenga
#t2004
#cBioinformatics
#index762851
#% 
#!
  
#*An ontology for bioinformatics applications.
#@Patricia G. Baker,Carole A. Goble,Sean Bechhofer,Norman W. Paton,Robert Stevens,Andy Brass
#t1999
#cBioinformatics
#index762853
#% 
#!
  
#*Weighted analysis of microarray gene expression using maximum-likelihood.
#@David J. Bakewell,Ernst Wit
#t2005
#cBioinformatics
#index762855
#% 
#!
  
#*IS: a web-site for intron statistics.
#@Endre Barta,László Kaján,Sándor Pongor
#t2003
#cBioinformatics
#index762856
#% 
#!
  
#*Generating Consensus Sequences from Partial Order Multiple Sequence Alignment Graphs.
#@Christopher Lee
#t2003
#cBioinformatics
#index762857
#% 
#!
  
#*HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families.
#@Paul I. W. de Bakker,Alex Bateman,David F. Burke,Ricardo Núñez Miguel,Kenji Mizuguchi,J. Shi,Hiroki Shirai,Tom L. Blundell
#t2001
#cBioinformatics
#index762858
#% 
#!
  
#*BACCardI-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
#@Daniela Bartels,Sebastian Kespohl,Stefan P. Albaum,Tanja Drüke,Alexander Goesmann,Julia Herold,Olaf Kaiser,Alfred Pühler,Friedhelm Pfeiffer,Günter Raddatz,Jens Stoye,Folker Meyer,Stephan C. Schuster
#t2005
#cBioinformatics
#index762859
#% 
#!
  
#*A graph-theoretic approach to testing associations between disparate sources of functional genomics data.
#@Raji Balasubramanian,Thomas LaFramboise,Denise Scholtens,Robert Gentleman
#t2004
#cBioinformatics
#index762860
#% 
#!
  
#*The database of epoxide hydrolases and haloalkane dehalogenases: one structure, many functions.
#@Sandra Barth,Markus Fischer,Rolf D. Schmid,Jürgen Pleiss
#t2004
#cBioinformatics
#index762861
#% 
#!
  
#*Clustering of gene expression data using a local shape-based similarity measure.
#@Rajarajeswari Balasubramaniyan,Eyke Hüllermeier,Nils Weskamp,Jörg Kämper
#t2005
#cBioinformatics
#index762863
#% 
#!
  
#*On the convergence of a clustering algorithm for protein-coding regions in microbial genomes.
#@Pierre Baldi
#t2000
#cBioinformatics
#index762867
#% 
#!
  
#*: a program that uses to align problematic nucleotide sequences.
#@Robert Belshaw,Aris Katzourakis
#t2005
#cBioinformatics
#index762868
#% 
#!
  
#*Sequence analysis by additive scales: DNA structure for sequences and repeats of all lengths.
#@Pierre Baldi,Pierre-François Baisnée
#t2000
#cBioinformatics
#index762869
#% 
#!
  
#*Assessing the accuracy of prediction algorithms for classification: an overview.
#@Pierre Baldi,Søren Brunak,Yves Chauvin,Claus A. F. Andersen,Henrik Nielsen
#t2000
#cBioinformatics
#index762871
#% 
#!
  
#*Structural basis for triplet repeat disorders: a computational analysis.
#@Pierre Baldi,Søren Brunak,Yves Chauvin,Anders Gorm Pedersen
#t1999
#cBioinformatics
#index762873
#% 
#!
  
#*Identification of transcription factor binding sites with variable-order Bayesian networks.
#@Irad E. Ben-Gal,Ayala Shani,Andre Gohr,Jan Grau,S. Arviv,Armin Shmilovici,Stefan Posch,Ivo Grosse
#t2005
#cBioinformatics
#index762874
#% 
#!
  
#*Exploiting the past and the future in protein secondary structure prediction.
#@Pierre Baldi,Søren Brunak,Paolo Frasconi,Giovanni Soda,Gianluca Pollastri
#t1999
#cBioinformatics
#index762875
#% 
#!
  
#*Identifying subtle interrelated changes in functional gene categories using continuous measures of gene expression.
#@Yoram Ben-Shaul,Hagai Bergman,Hermona Soreq
#t2005
#cBioinformatics
#index762876
#% 
#!
  
#*A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes.
#@Pierre Baldi,Anthony D. Long
#t2001
#cBioinformatics
#index762877
#% 
#!
  
#*ClustalW-MPI: ClustalW analysis using distributed and parallel computing.
#@Kuo-Bin Li
#t2003
#cBioinformatics
#index762879
#% 
#!
  
#*An integrated approach utilizing artificial neural networks and SELDI mass spectrometry for the classification of human tumours and rapid identification of potential biomarkers.
#@Graham R. Ball,Shahid Mian,F. Holding,R. O. Allibone,J. Lowe,S. Ali,G. Li,S. McCardle,I. O. Ellis,Colin Creaser,Robert C. Rees
#t2002
#cBioinformatics
#index762880
#% 
#!
  
#*Computational methods for the design of effective therapies against drug resistant HIV strains.
#@Niko Beerenwinkel,Tobias Sing,Thomas Lengauer,Jörg Rahnenführer,Kirsten Roomp,Igor Savenkov,Roman Fischer,Daniel Hoffmann,Joachim Selbig,Klaus Korn,Hauke Walter,Thomas Berg,Patrick Braun,Gerd Fätkenheuer,Mark Oette,Jürgen K. Rockstroh,Bernd Kupfer,Rolf Kaiser,Martin Däumer
#t2005
#cBioinformatics
#index762883
#% 
#!
  
#*An open letter to the scientific journals.
#@Catherine A. Ball,Gavin Sherlock,Helen E. Parkinson,Philippe Rocca-Serra,Catherine Brooksbank,Helen C. Causton,Duccio Cavalieri,Terry Gaasterland,Pascal Hingamp,Frank Holstege,Martin Ringwald,Paul T. Spellman,Christian J. Stoeckert Jr.,Jason E. Stewart,Ronald Taylor,Alvis Brazma,John Quackenbush
#t2002
#cBioinformatics
#index762884
#% 
#!
  
#*Putting the Predictive Toxicology Challenge Into Perspective: Reflections on the Results.
#@Romualdo Benigni,Alessandro Giuliani
#t2003
#cBioinformatics
#index762885
#% 
#!
  
#*Faster cyclic loess: normalizing RNA arrays via linear models.
#@Karla V. Ballman,Diane E. Grill,Ann L. Oberg,Terry M. Therneau
#t2004
#cBioinformatics
#index762886
#% 
#!
  
#*Survival prediction of diffuse large-B-cell lymphoma based on both clinical and gene expression information.
#@Lexin Li
#t2006
#cBioinformatics
#index762888
#% 
#!
  
#*The SWIB and the MDM2 domains are homologous and share a common fold.
#@Riccardo Bennett-Lovsey,Sarah E. Hart,Hiroki Shirai,Kenji Mizuguchi
#t2002
#cBioinformatics
#index762890
#% 
#!
  
#*Which Genetic Loci Have Greater Population Assignment Power?.
#@Michael A. Banks,Will Eichert,Jeffrey B. Olsen
#t2003
#cBioinformatics
#index762891
#% 
#!
  
#*Adjustment of systematic microarray data biases.
#@Monica Benito,Joel Parker,Quan Du,Junyuan Wu,Dong Xiang,Charles M. Perou,James Stephen Marron
#t2004
#cBioinformatics
#index762892
#% 
#!
  
#*Extensive feature detection of N-terminal protein sorting signals.
#@Hideo Bannai,Yoshinori Tamada,Osamu Maruyama,Kenta Nakai,Satoru Miyano
#t2002
#cBioinformatics
#index762893
#% 
#!
  
#*GENOTRACE: cDNA-based local GENOme assembly from TRACE archives.
#@Eugene Berezikov,Ronald H. A. Plasterk,Edwin Cuppen
#t2002
#cBioinformatics
#index762894
#% 
#!
  
#*An automated comparative analysis of 17 complete microbial genomes.
#@Arvind K. Bansal
#t1999
#cBioinformatics
#index762895
#% 
#!
  
#*3MOTIF: visualizing conserved protein sequence motifs in the protein structure database.
#@Steven P. Bennett,Craig G. Nevill-Manning,Douglas L. Brutlag
#t2003
#cBioinformatics
#index762896
#% 
#!
  
#*A novel approach for clustering proteomics data using Bayesian fast Fourier transform.
#@Halima Bensmail,Jennifer Golek,Michelle M. Moody,O. John Semmes,Abdelali Haoudi
#t2005
#cBioinformatics
#index762898
#% 
#!
  
#*DINAMO: interactive protein alignment and model building.
#@J. Bentz,A. Baucom,M. Hansen,L. Gregoret
#t1999
#cBioinformatics
#index762900
#% 
#!
  
#*Inference of gene regulatory networks and compound mode of action from time course gene expression profiles.
#@Mukesh Bansal,Giusy Della Gatta,Diego di Bernardo
#t2006
#cBioinformatics
#index762901
#% 
#!
  
#*Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information.
#@Lei Bao,Yan Cui
#t2005
#cBioinformatics
#index762903
#% 
#!
  
#*ConSeq: the identification of functionally and structurally important residues in protein sequences.
#@Carine Berezin,Fabian Glaser,Josef Rosenberg,Inbal Paz,Tal Pupko,Piero Fariselli,Rita Casadio,Nir Ben-Tal
#t2004
#cBioinformatics
#index762904
#% 
#!
  
#*Analyzing time series gene expression data.
#@Ziv Bar-Joseph
#t2004
#cBioinformatics
#index762905
#% 
#!
  
#*Hierarchical multi-label prediction of gene function.
#@Zafer Barutçuoglu,Robert E. Schapire,Olga G. Troyanskaya
#t2006
#cBioinformatics
#index762906
#% 
#!
  
#*K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data.
#@Ziv Bar-Joseph,Erik D. Demaine,David K. Gifford,Nathan Srebro,Angèle M. Hamel,Tommi Jaakkola
#t2003
#cBioinformatics
#index762907
#%610452
#%559089
#!
  
#*Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.
#@Casey M. Bergman,Joseph W. Carlson,Susan E. Celniker
#t2005
#cBioinformatics
#index762910
#% 
#!
  
#*Second eigenvalue of the Laplacian matrix for predicting RNA conformational switch by mutation.
#@Danny Barash
#t2004
#cBioinformatics
#index762911
#% 
#!
  
#*Fundamentals of massive automatic pairwise alignments of protein sequences: theoretical significance of Z-value statistics.
#@Olivier Bastien,Jean-Christophe Aude,Sylvaine Roy,Eric Maréchal
#t2004
#cBioinformatics
#index762912
#% 
#!
  
#*LUCY2: an interactive DNA sequence quality trimming and vector removal tool.
#@Song Li,Hui-Hsien Chou
#t2004
#cBioinformatics
#index762913
#% 
#!
  
#*Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays.
#@Yoseph Barash,Elinor Dehan,Meir Krupsky,Wilbur Franklin,Marc Geraci,Nir Friedman,Naftali Kaminski
#t2004
#cBioinformatics
#index762914
#% 
#!
  
#*Y. Barash, G. Elidan, T. Kaplan, , N. Friedman.
#@Yoseph Barash,Gal Elidan,Tommy Kaplan,Nir Friedman
#t2005
#cBioinformatics
#index762916
#% 
#!
  
#*Regression trees for analysis of mutational spectra in nucleotide sequences.
#@V. B. Berikov,Igor B. Rogozin
#t1999
#cBioinformatics
#index762917
#% 
#!
  
#*ALTree: association detection and localization of susceptibility sites using haplotype phylogenetic trees.
#@Claire Bardel,Vincent Danjean,Emmanuelle Génin
#t2006
#cBioinformatics
#index762918
#% 
#!
  
#*The PCR Suite.
#@Marijke J. van Baren,Peter Heutink
#t2004
#cBioinformatics
#index762920
#% 
#!
  
#*SeWeR: a customizable and integrated dynamic HTML interface to bioinformatics services.
#@Malay Kumar Basu
#t2001
#cBioinformatics
#index762921
#% 
#!
  
#*MethPrimer: designing primers for methylation PCRs.
#@Long-Cheng Li,Rajvir Dahiya
#t2002
#cBioinformatics
#index762922
#% 
#!
  
#*A proposal for a standard CORBA interface for genome maps.
#@Emmanuel Barillot,Ulf Leser,Philip Lijnzaad,Christophe Cussat-Blanc,Kim Jungfer,Frédéric Guyon,Guy Vaysseix,Carsten Helgesen,Patricia Rodriguez-Tomé
#t1999
#cBioinformatics
#index762923
#% 
#!
  
#*ddbRNA: detection of conserved secondary structures in multiple alignments.
#@Diego di Bernardo,Thomas Down,Tim J. P. Hubbard
#t2003
#cBioinformatics
#index762924
#% 
#!
  
#*LVB: parsimony and simulated annealing in the search for phylogenetic trees.
#@Daniel Barker
#t2004
#cBioinformatics
#index762925
#% 
#!
  
#*Local RNA base pairing probabilities in large sequences.
#@Stephan H. F. Bernhart,Ivo L. Hofacker,Peter F. Stadler
#t2006
#cBioinformatics
#index762926
#% 
#!
  
#*Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP.
#@Gary Barker,Jacqueline Batley,Helen O'Sullivan,Keith J. Edwards,David Edwards
#t2003
#cBioinformatics
#index762927
#% 
#!
  
#*An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis.
#@Jonathan A. Barker,Janet M. Thornton
#t2003
#cBioinformatics
#index762929
#% 
#!
  
#*BicAT: a biclustering analysis toolbox.
#@Simon Barkow,Stefan Bleuler,Amela Prelic,Philip Zimmermann,Eckart Zitzler
#t2006
#cBioinformatics
#index762931
#% 
#!
  
#*Avoiding model selection bias in small-sample genomic datasets.
#@Daniel P. Berrar,Ian Bradbury,Werner Dubitzky
#t2006
#cBioinformatics
#index762932
#% 
#!
  
#*Haploview: analysis and visualization of LD and haplotype maps.
#@Jeffrey C. Barrett,B. Fry,Julian B. Maller,Mark Daly
#t2005
#cBioinformatics
#index762933
#% 
#!
  
#*Characterizing gene sets with FuncAssociate.
#@Gabriel F. Berriz,Oliver D. King,Barbara Bryant,Chris Sander,Frederick P. Roth
#t2003
#cBioinformatics
#index762934
#% 
#!
  
#*Dynamite extended: two new services to simplify protein dynamic analysis.
#@C. Paul Barrett,Martin E. M. Noble
#t2005
#cBioinformatics
#index762935
#% 
#!
  
#*RBT - a tool for building refined Buneman trees.
#@Søren Besenbacher,Thomas Mailund,Lasse Westh-Nielsen,Christian N. S. Pedersen
#t2005
#cBioinformatics
#index762936
#% 
#!
  
#*Evaluation of annotation strategies using an entire genome sequence.
#@Ioannis Iliopoulos,Sophia Tsoka,Miguel A. Andrade,Anton J. Enright,Mark Carroll,Patrick Poullet,Vassilis J. Promponas,Theodore Liakopoulos,Giorgos Palaios,Claude Pasquier,Stavros J. Hamodrakas,Javier Tamames,Asutosh T. Yagnik,Anna Tramontano,Damien Devos,Christian Blaschke,Alfonso Valencia,David Brett,David Martin,Christophe Leroy,Isidore Rigoutsos,Chris Sander,Christos A. Ouzounis
#t2003
#cBioinformatics
#index762937
#% 
#!
  
#*Processing and quality control of DNA array hybridization data.
#@Tim Beißbarth,Kurt Fellenberg,Benedikt Brors,R. Arribas-Prat,J. M. Boer,Nicole C. Hauser,Marcel Scheideler,Jörg D. Hoheisel,G. Schütz,Annemarie Poustka,Martin Vingron
#t2000
#cBioinformatics
#index762938
#% 
#!
  
#*Command line tool for calculating theoretical MS spectra for given sequences.
#@Andreas M. Boehm,Florian Grosse-Coosmann,Albert Sickmann
#t2004
#cBioinformatics
#index762939
#% 
#!
  
#*Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model.
#@Philippe Broët,Sylvia Richardson
#t2006
#cBioinformatics
#index762940
#% 
#!
  
#*A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.
#@Matthew Bellew,Marc Coram,Matthew Fitzgibbon,Mark Igra,Tim Randolph,Pei Wang,Damon May,Jimmy K. Eng,Ruihua Fang,ChenWei Lin,Jinzhi Chen,David Goodlett,Jeffrey Whiteaker,Amanda G. Paulovich,Martin McIntosh
#t2006
#cBioinformatics
#index762941
#% 
#!
  
#*GoFish finds genes with combinations of Gene Ontology attributes.
#@Gabriel F. Berriz,James V. White,Oliver D. King,Frederick P. Roth
#t2003
#cBioinformatics
#index762942
#% 
#!
  
#*Trev: a DNA trace editor and viewer.
#@James K. Bonfield,Kathryn F. Beal,Matthew J. Betts,Rodger Staden
#t2002
#cBioinformatics
#index762943
#% 
#!
  
#*PDZBase: a protein?Cprotein interaction database for PDZ-domains.
#@Thijs Beuming,Lucy Skrabanek,Masha Y. Niv,Piali Mukherjee,Harel Weinstein
#t2005
#cBioinformatics
#index762944
#% 
#!
  
#*ZTR: a new format for DNA sequence trace data.
#@James K. Bonfield,Rodger Staden
#t2002
#cBioinformatics
#index762945
#% 
#!
  
#*A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins.
#@Thijs Beuming,Harel Weinstein
#t2004
#cBioinformatics
#index762946
#% 
#!
  
#*Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.
#@Eric Bonnet,Jan Wuyts,Pierre Rouzé,Yves Van de Peer
#t2004
#cBioinformatics
#index762947
#% 
#!
  
#*Dynamic simulation of protein complex formation on a genomic scale.
#@A. Beyer,T. Wilhelm
#t2005
#cBioinformatics
#index762948
#% 
#!
  
#*BLAST Search Updater: a notification system for new database matches.
#@Matthew Boone,Chris Upton
#t2000
#cBioinformatics
#index762949
#% 
#!
  
#*A simple tool for drawing proteolytic peptide maps.
#@Robert J. Beynon
#t2005
#cBioinformatics
#index762950
#% 
#!
  
#*Microarray phenotyping in reveals a regulon of chemotaxis genes.
#@Ezgi O. Booth,Nancy Van Driessche,Olga Zhuchenko,Adam Kuspa,Gad Shaulsky
#t2005
#cBioinformatics
#index762951
#% 
#!
  
#*REVCOM: a robust Bayesian method for evolutionary rate estimation.
#@Andrew J. Bordner,Ruben Abagyan
#t2005
#cBioinformatics
#index762953
#% 
#!
  
#*The Third Georgia Tech-Emory International Conference on Bioinformatics: In Silico Biology; Bioinformatics After Human Genome (November 15-18, 2001, Atlanta, Georgia, USA).
#@Mark Borodovsky,Eugene V. Koonin,Chris Burge,James W. Fickett,John Logsdon,Andrej Sali,Gary D. Stormo,Igor B. Zhulin
#t2001
#cBioinformatics
#index762959
#% 
#!
  
#*The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics: Biology, Computational Genomics and Evolutionary Biology.
#@Mark Borodovsky,Andrey Rzhetsky,Dmitrij Frishman
#t2005
#cBioinformatics
#index762961
#% 
#!
  
#*The chemical organization of signaling interactions.
#@Upinder S. Bhalla
#t2002
#cBioinformatics
#index762962
#% 
#!
  
#*apTreeshape: statistical analysis of phylogenetic tree shape.
#@Nicolas Bortolussi,Eric Durand,Michael G. B. Blum,Olivier François
#t2006
#cBioinformatics
#index762963
#% 
#!
  
#*A duplication growth model of gene expression networks.
#@Ashish Bhan,David J. Galas,T. Gregory Dewey
#t2002
#cBioinformatics
#index762964
#% 
#!
  
#*Analysing gene expressions with GRANK.
#@W. P. H. de Boer,J. J. Oudejans,C. J. L. M. Meijer,Jan Lankelma
#t2003
#cBioinformatics
#index762965
#% 
#!
  
#*A linear programming approach for identifying a consensus sequence on DNA sequences.
#@Han-Lin Li,Chang-Jui Fu
#t2005
#cBioinformatics
#index762966
#% 
#!
  
#*Differential expression of genes coding for ribosomal proteins in different human tissues.
#@Stefania Bortoluzzi,F. d'Alessi,Chiara Romualdi,Gian Antonio Danieli
#t2001
#cBioinformatics
#index762968
#% 
#!
  
#*Correlation between gene expression profiles and protein-protein interactions within and across genomes.
#@Nitin Bhardwaj,Hui Lu
#t2005
#cBioinformatics
#index762969
#% 
#!
  
#*SPLINDID: a semi-parametric, model-based method for obtaining transcription rates and gene regulation parameters from genomic and proteomic expression profiles.
#@Kavitha Bhasi,Alan Forrest,Murali Ramanathan
#t2005
#cBioinformatics
#index762971
#% 
#!
  
#*VizStruct for visualization of genome-wide SNP analyses.
#@Kavitha Bhasi,Li Zhang,Daniel Brazeau,Aidong Zhang,Murali Ramanathan
#t2006
#cBioinformatics
#index762973
#% 
#!
  
#*The Human Transcript Database: a catalogue of full length cDNA inserts.
#@John Bouck,Michael P. McLeod,Kim Worley,Richard A. Gibbs
#t2000
#cBioinformatics
#index762974
#% 
#!
  
#*PSLpred: prediction of subcellular localization of bacterial proteins.
#@Manoj Bhasin,Aarti Garg,G. P. S. Raghava
#t2005
#cBioinformatics
#index762975
#% 
#!
  
#*SVM based method for predicting HLA-DRB10401 binding peptides in an antigen sequence.
#@Manoj Bhasin,G. P. S. Raghava
#t2004
#cBioinformatics
#index762977
#% 
#!
  
#*A CART-based approach to discover emerging patterns in microarray data.
#@Anne-Laure Boulesteix,Gerhard Tutz,Korbinian Strimmer
#t2003
#cBioinformatics
#index762978
#% 
#!
  
#*MHCBN: a comprehensive database of MHC binding and non-binding peptides.
#@Manoj Bhasin,Harpreet Singh,G. P. S. Raghava
#t2003
#cBioinformatics
#index762979
#% 
#!
  
#*Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression.
#@Valentina Boeva,Mireille Régnier,Dmitri A. Papatsenko,Vsevolod Makeev
#t2006
#cBioinformatics
#index762980
#% 
#!
  
#*VISSA: a program to visualize structural features from structure sequence alignment.
#@Weizhong Li,Adam Godzik
#t2006
#cBioinformatics
#index762981
#% 
#!
  
#*Bayesian integrated functional analysis of microarray data.
#@Madhuchhanda Bhattacharjee,Colin C. Pritchard,Peter S. Nelson,Elja Arjas
#t2004
#cBioinformatics
#index762982
#% 
#!
  
#*ISMB-2000: Bioinformatics enters a new millennium.
#@Philip E. Bourne,Michael Gribskov
#t2000
#cBioinformatics
#index762983
#% 
#!
  
#*A new method to predict the consensus secondary structure of a set of unaligned RNA sequences.
#@Dominique Bouthinon,Henry Soldano
#t1999
#cBioinformatics
#index762985
#% 
#!
  
#*PCA disjoint models for multiclass cancer analysis using gene expression data.
#@Silvio Bicciato,A. Luchini,Carlo Di Bello
#t2003
#cBioinformatics
#index762986
#% 
#!
  
#*DRAGON: Database Referencing of Array Genes Online.
#@Christopher M. L. S. Bouton,Jonathan Pevsner
#t2000
#cBioinformatics
#index762987
#% 
#!
  
#*Robust Cluster Analysis of Microarray Gene Expression Data with the Number of Clusters Determined Biologically.
#@David R. Bickel
#t2003
#cBioinformatics
#index762988
#% 
#!
  
#*DRAGON View: information visualization for annotated microarray data.
#@Christopher M. L. S. Bouton,Jonathan Pevsner
#t2002
#cBioinformatics
#index762989
#% 
#!
  
#*Degrees of differential gene expression: detecting biologically significant expression differences and estimating their magnitudes.
#@David R. Bickel
#t2004
#cBioinformatics
#index762990
#% 
#!
  
#*PUNS: transcriptomic- and genomic-in silico PCR for enhanced primer design.
#@Paul C. Boutros,Allan B. Okey
#t2004
#cBioinformatics
#index762991
#% 
#!
  
#*Probabilities of spurious connections in gene networks: application to expression time series.
#@David R. Bickel
#t2005
#cBioinformatics
#index762992
#% 
#!
  
#*Codon Pairs in the Genome of Escherichia Coli.
#@Svetlana Boycheva,Georgi Chkodrov,Ivan Ivanov
#t2003
#cBioinformatics
#index762993
#% 
#!
  
#*ClutrFree: cluster tree visualization and interpretation.
#@Ghislain Bidaut,Michael F. Ochs
#t2004
#cBioinformatics
#index762994
#% 
#!
  
#*Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data.
#@Frédéric Boyer,Anne Morgat,Laurent Labarre,Joël Pothier,Alain Viari
#t2005
#cBioinformatics
#index762995
#% 
#!
  
#*CAFE: a computational tool for the study of gene family evolution.
#@Tijl De Bie,Nello Cristianini,Jeffery P. Demuth,Matthew W. Hahn
#t2006
#cBioinformatics
#index762996
#% 
#!
  
#*SeqExpress: desktop analysis and visualization tool for gene expression experiments.
#@John Boyle
#t2004
#cBioinformatics
#index762997
#% 
#!
  
#*Prediction of biologically significant components from microarray data: Independently Consistent Expression Discriminator (ICED).
#@Rahul Bijlani,Yinhe Cheng,David A. Pearce,Andrew I. Brooks,Mitsunori Ogihara
#t2003
#cBioinformatics
#index762998
#% 
#!
  
#*Gene-Expression Omnibus integration and clustering Tools in SeqExpress.
#@John Boyle
#t2005
#cBioinformatics
#index762999
#% 
#!
  
#*In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction.
#@Joseba Bikandi,Rosario San Millán,Aitor Rementeria,Javier Garaizar
#t2004
#cBioinformatics
#index763000
#% 
#!
  
#*SWEET - WWW-based rapid 3D construction of oligo- and polysaccharides.
#@Andreas Bohne,Elke Lang,Claus-Wilhelm von der Lieth
#t1999
#cBioinformatics
#index763001
#% 
#!
  
#*Haplotype-based linkage disequilibrium mapping via direct data mining.
#@Jing Li,Tao Jiang
#t2005
#cBioinformatics
#index763002
#% 
#!
  
#*Phan3D: design of biological phantoms in 3D electron microscopy.
#@Jose-Roman Bilbao-Castro,Carlos Oscar Sánchez Sorzano,Inmaculada García,José-Jesús Fernández
#t2004
#cBioinformatics
#index763003
#% 
#!
  
#*A visual environment for the manipulation and integration of JAVA beans.
#@J. Boyle
#t1998
#cBioinformatics
#index763004
#% 
#!
  
#*A software program combining sequence motif searches with keywords for finding repeats containing DNA sequences.
#@Mehmet Bilgen,Mehmet Karaca,A. Naci Onus,Ayse Gül Ince
#t2004
#cBioinformatics
#index763005
#% 
#!
  
#*GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes.
#@Elizabeth I. Boyle,Shuai Weng,Jeremy Gollub,Heng Jin,David Botstein,J. Michael Cherry,Gavin Sherlock
#t2004
#cBioinformatics
#index763006
#% 
#!
  
#*Detection of low level genomic alterations by comparative genomic hybridization based on cDNA micro-arrays.
#@Sven Bilke,Qing-Rong Chen,Craig C. Whiteford,Javed I. Khan
#t2005
#cBioinformatics
#index763007
#% 
#!
  
#*Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering.
#@Daniel Bozinov,Jörg Rahnenführer
#t2002
#cBioinformatics
#index763008
#% 
#!
  
#*Visualizing large hierarchical clusters in hyperbolic space.
#@Jonathan Bingham,Sucha Sudarsanam
#t2000
#cBioinformatics
#index763009
#% 
#!
  
#*Improved prediction of protein-Cprotein binding sites using a support vector machines approach.
#@James R. Bradford,David R. Westhead
#t2005
#cBioinformatics
#index763010
#% 
#!
  
#*QUASAR - scoring and ranking of sequence-structure alignments.
#@Fabian Birzele,Jan E. Gewehr,Ralf Zimmer
#t2005
#cBioinformatics
#index763011
#% 
#!
  
#*A parallel graph decomposition algorithm for DNA sequencing with nanopores.
#@Shahid H. Bokhari,Jon R. Sauer
#t2005
#cBioinformatics
#index763012
#% 
#!
  
#*A grid layout algorithm for automatic drawing of biochemical networks.
#@Weijiang Li,Hiroyuki Kurata
#t2005
#cBioinformatics
#index763013
#% 
#!
  
#*Supervised identification of allergen-representative peptides for in silico detection of potentially allergenic proteins.
#@Åsa K. Björklund,Daniel Soeria-Atmadja,Anna Zorzet,Ulf Hammerling,Mats G. Gustafsson
#t2005
#cBioinformatics
#index763014
#% 
#!
  
#*Human-CMouse Gene Searcher: a tool to assist discovery of malformation-associated genes by using phenotype databases.
#@Ian Bradford,Robin Winter,Carl Evans,Jonathan Bard
#t2005
#cBioinformatics
#index763015
#% 
#!
  
#*Calculation of the minimum number of replicate spots required for detection of significant gene expression fold change in microarray experiments.
#@Michael A. Black,R. W. Doerge
#t2002
#cBioinformatics
#index763016
#% 
#!
  
#*A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells.
#@Michael V. Boland,Robert F. Murphy
#t2001
#cBioinformatics
#index763019
#% 
#!
  
#*Dimension reduction methods for microarrays with application to censored survival data.
#@Lexin Li,Hongzhe Li
#t2004
#cBioinformatics
#index763020
#% 
#!
  
#*Statistical mechanical simulation of polymeric DNA melting with MELTSIM.
#@Richard D. Blake,Jeff W. Bizzaro,Jonathan D. Blake,G. R. Day,S. G. Delcourt,J. Knowles,Kenneth A. Marx,J. SantaLucia Jr.
#t1999
#cBioinformatics
#index763021
#% 
#!
  
#*Is cross-validation valid for small-sample microarray classification?
#@Ulisses Braga-Neto,Edward R. Dougherty
#t2004
#cBioinformatics
#index763022
#% 
#!
  
#*ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression.
#@Jonathon Blake,Christian Schwager,Misha Kapushesky,Alvis Brazma
#t2006
#cBioinformatics
#index763023
#% 
#!
  
#*Is cross-validation better than resubstitution for ranking genes?
#@Ulisses Braga-Neto,Ronaldo Fumio Hashimoto,Edward R. Dougherty,Danh V. Nguyen,Raymond J. Carroll
#t2004
#cBioinformatics
#index763024
#% 
#!
  
#*MPSA: integrated system for multiple protein sequence analysis with client/server capabilities.
#@Christophe Blanchet,Christophe Combet,Christophe Geourjon,Gilbert Deléage
#t2000
#cBioinformatics
#index763027
#% 
#!
  
#*Machaon CVE: cluster validation for gene expression data.
#@Nadia Bolshakova,Francisco Azuaje
#t2003
#cBioinformatics
#index763028
#% 
#!
  
#*Discovery of stable and significant binding motif pairs from PDB complexes and protein interaction datasets.
#@Haiquan Li,Jinyan Li
#t2005
#cBioinformatics
#index763029
#% 
#!
  
#*Using a calibration experiment to assess gene-specific information: full Bayesian and empirical Bayesian models for two-channel microarray data.
#@Marta Blangiardo,Simona Toti,Betti Giusti,Rosanna Abbate,Alberto Magi,Filippo Poggi,Luciana Rossi,Francesca Torricelli,Annibale Biggeri
#t2006
#cBioinformatics
#index763030
#% 
#!
  
#*An integrated tool for microarray data clustering and cluster validity assessment .
#@Nadia Bolshakova,Francisco Azuaje,Padraig Cunningham
#t2005
#cBioinformatics
#index763031
#% 
#!
  
#*Do you do text?
#@Christian Blaschke,Alexander S. Yeh,Evelyn Camon,Marc E. Colosimo,Rolf Apweiler,Lynette Hirschman,Alfonso Valencia
#t2005
#cBioinformatics
#index763032
#% 
#!
  
#*A knowledge-driven approach to cluster validity assessment.
#@Nadia Bolshakova,Francisco Azuaje,Padraig Cunningham
#t2005
#cBioinformatics
#index763033
#% 
#!
  
#*A heuristic managing errors for DNA sequencing.
#@Jacek Blazewicz,Piotr Formanowicz,Frédéric Guinand,Marta Kasprzak
#t2002
#cBioinformatics
#index763034
#% 
#!
  
#*Selection of optimal DNA oligos for gene expression arrays.
#@Fugen Li,Gary D. Stormo
#t2001
#cBioinformatics
#index763036
#% 
#!
  
#*Construction of DNA restriction maps based on a simplified experiment.
#@Jacek Blazewicz,Piotr Formanowicz,Marta Kasprzak,M. Jaroszewski,Wojciech T. Markiewicz
#t2001
#cBioinformatics
#index763037
#% 
#!
  
#*A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.
#@Benjamin M. Bolstad,Rafael A. Irizarry,Magnus Åstrand,Terence P. Speed
#t2003
#cBioinformatics
#index763038
#% 
#!
  
#*Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns.
#@Jinyan Li,Limsoon Wong
#t2002
#cBioinformatics
#index763039
#% 
#!
  
#*Bioinformatics Education-A UK perspective.
#@Andy Brass
#t2000
#cBioinformatics
#index763041
#% 
#!
  
#*RNA tertiary structure determination: NOE pathways construction by tabu search.
#@Jacek Blazewicz,Marta Szachniuk,Adam Wojtowicz
#t2005
#cBioinformatics
#index763042
#% 
#!
  
#*ALES: Cell Lineage Analysis and Mapping of Developmental Events.
#@Volker Braun,Ricardo B. R. Azevedo,Markus Gumbel,Paul-Michael Agapow,Armand M. Leroi,Hans-Peter Meinzer
#t2003
#cBioinformatics
#index763043
#% 
#!
  
#*Greedy mixture learning for multiple motif discovery in biological sequences.
#@Konstantinos Blekas,Dimitrios I. Fotiadis,Aristidis Likas
#t2003
#cBioinformatics
#index763044
#% 
#!
  
#*A practical and robust sequence search strategy for structural genomics target selection.
#@James E. Bray,Russell L. Marsden,Stuart C. G. Rison,Alexei Savchenko,Aled M. Edwards,Janet M. Thornton,Christine A. Orengo
#t2004
#cBioinformatics
#index763047
#% 
#!
  
#*FindGDPs: identification of primers for labeling microbial transcriptomes for DNA microarray analysis.
#@Robert J. Blick,Andrew T. Revel,Eric J. Hansen
#t2003
#cBioinformatics
#index763048
#% 
#!
  
#*On the Importance of Standardisation in Life Sciences.
#@Alvis Brazma
#t2001
#cBioinformatics
#index763049
#% 
#!
  
#*BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains.
#@Michael L. Blinov,James R. Faeder,Byron Goldstein,William S. Hlavacek
#t2004
#cBioinformatics
#index763050
#% 
#!
  
#*Toxicology Analysis by Means of the JSM-method.
#@V. G. Blinova,D. A. Dobrynin,V. K. Finn,Sergei O. Kuznetsov,E. S. Pankratova
#t2003
#cBioinformatics
#index763052
#% 
#!
  
#*Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.
#@Volker Brendel,Liqun Xing,Wei Zhu
#t2004
#cBioinformatics
#index763053
#% 
#!
  
#*`Hybrid Protein Model' for optimally defining 3D protein structure fragments.
#@Alexandre G. de Brevern,Serge A. Hazout
#t2003
#cBioinformatics
#index763055
#% 
#!
  
#*Fels-Rand: an Xlisp-Stat program for the comparative analysis of data under phylogenetic uncertainty.
#@Simon Blomberg
#t2000
#cBioinformatics
#index763056
#% 
#!
  
#*DomainSieve: a protein domain-based screen that led to the identification of -associated genes with potential link to DNA maintenance.
#@Pierre Brézellec,Mark Hoebeke,Marie-Sophie Hiet,Sophie Pasek,Jean-Luc Ferat
#t2006
#cBioinformatics
#index763057
#% 
#!
  
#*HOMGL - comparing genelists across species and with different accession numbers.
#@Nils Blüthgen,Szymon M. Kielbasa,Branka Cajavec,Hanspeter Herzel
#t2004
#cBioinformatics
#index763058
#% 
#!
  
#*JenPep: a database of quantitative functional peptide data for immunology.
#@Martin J. Blythe,Irini A. Doytchinova,Darren R. Flower
#t2002
#cBioinformatics
#index763060
#% 
#!
  
#*Comparative analysis of seven multiple protein sequence alignment servers: clues to enhance reliability of predictions.
#@P. Briffeuil,G. Baudoux,Christophe G. Lambert,Xavier De Bolle,C. Vinals,Ernest Feytmans,Eric Depiereux
#t1998
#cBioinformatics
#index763061
#% 
#!
  
#*A fast top-down method for constructing reliable radiation hybrid frameworks.
#@Trond Hellem Bø,Inge Jonassen,Ingvar Eidhammer,Carsten Helgesen
#t2002
#cBioinformatics
#index763062
#% 
#!
  
#*PhyloBLAST: facilitating phylogenetic analysis of BLAST results.
#@Fiona S. L. Brinkman,Ivan Wan,Robert E. W. Hancock,Ann M. Rose,Steven J. Jones
#t2001
#cBioinformatics
#index763063
#% 
#!
  
#*CaGE: Cardiac gene expression knowledgebase.
#@Michael Bober,Kevin Wiehe,Christina K. Yung,Tugba Onal Suzek,Matthew Lin,William Baumgartner Jr.,Raimond L. Winslow
#t2002
#cBioinformatics
#index763064
#% 
#!
  
#*2SNP: scalable phasing based on 2-SNP haplotypes.
#@Dumitru Brinza,Alexander Zelikovsky
#t2006
#cBioinformatics
#index763065
#% 
#!
  
#*TRbase: a database relating tandem repeats to disease genes for the human genome.
#@T. Boby,A.-M. Patch,S. J. Aves
#t2005
#cBioinformatics
#index763066
#% 
#!
  
#*Predicting protein-protein interactions from primary structure.
#@Joel R. Bock,David A. Gough
#t2001
#cBioinformatics
#index763068
#% 
#!
  
#*PACdb: PolyA Cleavage Site and 3'-UTR Database.
#@J. Michael Brockman,Priyam Singh,Donglin Liu,Sean Quinlan,Jesse Salisbury,Joel H. Graber
#t2005
#cBioinformatics
#index763069
#% 
#!
  
#*Whole-proteome interaction mining.
#@Joel R. Bock,David A. Gough
#t2003
#cBioinformatics
#index763070
#% 
#!
  
#*JDotter: a Java interface to multiple dotplots generated by dotter.
#@Ryan Brodie,Rachel L. Roper,Chris Upton
#t2004
#cBioinformatics
#index763071
#% 
#!
  
#*BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing.
#@Christoph Bock,Sabine Reither,Thomas Mikeska,Martina Paulsen,Jörn Walter,Thomas Lengauer
#t2005
#cBioinformatics
#index763072
#% 
#!
  
#*Clustering protein sequences-structure prediction by transitive homology.
#@Eva Bolten,Alexander Schliep,Sebastian Schneckener,Dietmar Schomburg,Rainer Schrader
#t2001
#cBioinformatics
#index763073
#% 
#!
  
#*Analysis of recursive gene selection approaches from microarray data.
#@Fan Li,Yiming Yang
#t2005
#cBioinformatics
#index763074
#% 
#!
  
#*A Bayesian Network Approach to Operon Prediction.
#@Joseph Bockhorst,Mark Craven,David Page,Jude W. Shavlik,Jeremy D. Glasner
#t2003
#cBioinformatics
#index763075
#% 
#!
  
#*Identifying gene expression changes in breast cancer that distinguish early and late relapse among uncured patients.
#@Philippe Broët,Vladimir A. Kuznetsov,Jonas Bergh,Edison T. Liu,Lance D. Miller
#t2006
#cBioinformatics
#index763076
#% 
#!
  
#*Identifying sequence regions undergoing conformational change via predicted continuum secondary structure.
#@Mikael Bodén,Timothy L. Bailey
#t2006
#cBioinformatics
#index763077
#% 
#!
  
#*A mixture model-based strategy for selecting sets of genes in multiclass response microarray experiments.
#@Philippe Broët,Alex Lewin,Sylvia Richardson,Cyril Dalmasso,Henri Magdelenat
#t2004
#cBioinformatics
#index763078
#% 
#!
  
#*Prediction of subcellular localization using sequence-biased recurrent networks.
#@Mikael Bodén,John Hawkins
#t2005
#cBioinformatics
#index763079
#% 
#!
  
#*TopDraw: a sketchpad for protein structure topology cartoons.
#@Charles S. Bond
#t2003
#cBioinformatics
#index763080
#% 
#!
  
#*Systematic intervention of transcription for identifying network response to disease and cellular phenotypes.
#@Huai Li,Ming Zhan
#t2006
#cBioinformatics
#index763081
#% 
#!
  
#*R/qtl: QTL Mapping in Experimental Crosses.
#@Karl W. Broman,Hao Wu,Saunak Sen,Gary A. Churchill
#t2003
#cBioinformatics
#index763084
#% 
#!
  
#*A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor.
#@Dawn J. Brooks,Jacques R. Fresco,Mona Singh
#t2004
#cBioinformatics
#index763085
#% 
#!
  
#*Online Predicted Human Interaction Database.
#@Kevin R. Brown,Igor Jurisica
#t2005
#cBioinformatics
#index763092
#% 
#!
  
#*MView: a web-compatible database search or multiple alignment viewer.
#@N. P. Brown,Christophe Leroy,Chris Sander
#t1998
#cBioinformatics
#index763093
#% 
#!
  
#*Frame: detection of genomic sequencing errors.
#@N. P. Brown,Chris Sander,Peer Bork
#t1998
#cBioinformatics
#index763094
#% 
#!
  
#*FLOSS: flexible ordered subset analysis for linkage mapping of complex traits.
#@B. L. Browning
#t2006
#cBioinformatics
#index763095
#% 
#!
  
#*MUTAGEN: Multi-User Tool for Annotating GENomes.
#@Kim Brügger,Peter Redder,Marie Skovgaard
#t2003
#cBioinformatics
#index763097
#% 
#!
  
#*CoPE: a collaborative pedigree drawing environment.
#@L. Brun-Samarcq,Sophie Gallina,A. Philippi,F. Demenais,Guy Vaysseix,Emmanuel Barillot
#t1999
#cBioinformatics
#index763098
#% 
#!
  
#*Corrected Small-sample Estimation of the Bayes Error.
#@Marcel Brun,David Sabbagh,Seungchan Kim,Edward R. Dougherty
#t2003
#cBioinformatics
#index763099
#% 
#!
  
#*BioQuery: An Object Framework for Building Queries to Biomedical Databases.
#@James M. Brundege,Christopher Dubay
#t2003
#cBioinformatics
#index763100
#% 
#!
  
#*Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network.
#@Vladimir Brusic,George B. Rudy,G. Honeyman,Jürgen Hammer,Leonard C. Harrison
#t1998
#cBioinformatics
#index763101
#% 
#!
  
#*Guest Editor Preface: Plant & Animal Genome (PAG) Meeting Bioinformatics Session Paper Competition.
#@Richard M. Bruskiewich
#t2004
#cBioinformatics
#index763102
#% 
#!
  
#*Limited conformational space for early-stage protein folding simulation.
#@Michal Brylinski,W. Jurkowski,Leszek Konieczny,Irena Roterman
#t2004
#cBioinformatics
#index763111
#% 
#!
  
#*Combining many multiple alignments in one improved alignment.
#@K. Bucka-Lassen,O. Caprani,J. Hein
#t1999
#cBioinformatics
#index763113
#% 
#!
  
#*The CRASSS plug-in for integrating annotation data with hierarchical clustering results.
#@Eugen C. Buehler,Jeffrey R. Sachs,Kui Shao,Ansuman Bagchi,Lyle H. Ungar
#t2004
#cBioinformatics
#index763114
#% 
#!
  
#*Efficient large-scale sequence comparison by locality-sensitive hashing.
#@Jeremy Buhler
#t2001
#cBioinformatics
#index763115
#% 
#!
  
#*Structure prediction meta server.
#@Janusz M. Bujnicki,Arne Elofsson,Daniel Fischer,Leszek Rychlewski
#t2001
#cBioinformatics
#index763116
#% 
#!
  
#*Fold-recognition detects an error in the Protein Data Bank.
#@Janusz M. Bujnicki,Leszek Rychlewski,Daniel Fischer
#t2002
#cBioinformatics
#index763117
#% 
#!
  
#*BioMolQuest: integrated database-based retrieval of protein structural and functional information.
#@Yury V. Bukhman,Jeffrey Skolnick
#t2001
#cBioinformatics
#index763118
#% 
#!
  
#*Inferring genetic regulatory logic from expression data.
#@Svetlana Bulashevska,Roland Eils
#t2005
#cBioinformatics
#index763119
#% 
#!
  
#*CGO: utilizing and integrating gene expression microarray data in clinical research and data management.
#@Klaus Bumm,Mingzhong Zheng,Clyde Bailey,Fenghuang Zhan,M. Chiriva-Internati,Paul Eddlemon,Julian Terry,Bart Barlogie,John D. Shaughnessy Jr.
#t2002
#cBioinformatics
#index763121
#% 
#!
  
#*Computational prediction of RNA editing sites.
#@Ralf Bundschuh
#t2004
#cBioinformatics
#index763122
#% 
#!
  
#*arrayMagic: two-colour cDNA microarray quality control, preprocessing.
#@Andreas Buness,Wolfgang Huber,Klaus Steiner,Holger Sültmann,Annemarie Poustka
#t2005
#cBioinformatics
#index763123
#% 
#!
  
#*Graphical Methods for Class Prediction Using Dimension Reduction Techniques on DNA Microarray Data.
#@Efstathia Bura,Ruth M. Pfeiffer
#t2003
#cBioinformatics
#index763124
#% 
#!
  
#*MOUSE (Mitochondrial and Other Useful SEquences) a compilation of population genetic markers.
#@Florian Burckhardt
#t2002
#cBioinformatics
#index763125
#% 
#!
  
#*Improving promoter prediction Improving promoter prediction for the NNPP2.2 algorithm: a case study using Escherichia coli DNA sequences.
#@S. Burden,Y.-X. Lin,R. Zhang
#t2005
#cBioinformatics
#index763126
#% 
#!
  
#*The Second Georgia Tech International Conference on Bioinformatics: Sequence, Structure and Function (November 11-14, 1999, Atlanta, Georgia, USA).
#@Chris Burge,Andrej Sali,Mark Borodovsky
#t1999
#cBioinformatics
#index763127
#% 
#!
  
#*Formalization of mouse embryo anatomy.
#@Albert Burger,Duncan Davidson,Richard A. Baldock
#t2004
#cBioinformatics
#index763128
#% 
#!
  
#*PPCMatrix: a PowerPC dotmatrix program to compare large genomic sequences against protein sequences.
#@T. R. Burglin
#t1998
#cBioinformatics
#index763130
#% 
#!
  
#*Predicting protein interaction sites: binding hot-spots in protein-protein and protein-ligand interfaces.
#@Nicholas J. Burgoyne,Richard M. Jackson
#t2006
#cBioinformatics
#index763131
#% 
#!
  
#*Browsing the SLoop database of structurally classified loops connecting elements of protein secondary structure.
#@David F. Burke,Charlotte M. Deane,Tom L. Blundell
#t2000
#cBioinformatics
#index763132
#% 
#!
  
#*INFO-RNA - a fast approach to inverse RNA folding.
#@Anke Busch,Rolf Backofen
#t2006
#cBioinformatics
#index763136
#% 
#!
  
#*SECISDesign: a server to design SECIS-elements within the coding sequence.
#@Anke Busch,Sebastian Will,Rolf Backofen
#t2005
#cBioinformatics
#index763137
#% 
#!
  
#*Parallel multifactor dimensionality reduction: a tool for the large-scale analysis of gene-gene interactions.
#@William S. Bush,Scott M. Dudek,Marylyn D. Ritchie
#t2006
#cBioinformatics
#index763138
#% 
#!
  
#*MAPS: a microarray project system for gene expression experiment information and data validation.
#@Pierre R. Bushel,Hisham Hamadeh,Lee Bennett,Stella Sieber,Karla Martin,Emile F. Nuwaysir,Kate Johnson,Kelli Reynolds,Richard S. Paules,Cynthia A. Afshari
#t2001
#cBioinformatics
#index763139
#% 
#!
  
#*ProbeDesigner: for the design of probesets for branched DNA (bDNA) signal amplification assays.
#@Steven Bushnell,J. Budde,T. Catino,Jack Cole,A. Derti,R. Kelso,M. L. Collins,G. Molino,P. Sheridan,J. Monahan,M. Urdea
#t1999
#cBioinformatics
#index763140
#% 
#!
  
#*Integration of GO annotations in Correspondence Analysis: facilitating the interpretation of microarray data.
#@Christian H. Busold,Stefan Winter,Nicole C. Hauser,Andrea Bauer,Jürgen Dippon,Jörg D. Hoheisel,Kurt Fellenberg
#t2005
#cBioinformatics
#index763141
#% 
#!
  
#*PCP: a program for supervised classification of gene expression profiles.
#@Ljubomir J. Buturovic
#t2006
#cBioinformatics
#index763142
#% 
#!
  
#*A kinase sequence database: sequence alignments and family assignment.
#@Oleksandr V. Buzko,Kevan M. Shokat
#t2002
#cBioinformatics
#index763143
#% 
#!
  
#*Differential network expression during drug and stress response.
#@Lawrence Cabusora,Electra Sutton,Andy W. Fulmer,Christian V. Forst
#t2005
#cBioinformatics
#index763147
#% 
#!
  
#*MIPSIM: similarity analysis of molecular interaction potentials.
#@Miquel de Càceres,Jordi Villà,Juan J. Lozano,Ferran Sanz
#t2000
#cBioinformatics
#index763148
#% 
#!
  
#*Predicting subcellular localization of proteins in a hybridization space.
#@Yu-Dong Cai,Kuo-Chen Chou
#t2004
#cBioinformatics
#index763149
#% 
#!
  
#*Prediction of Saccharomyces cerevisiae protein functional class from functional domain composition.
#@Yu-Dong Cai,Andrew J. Doig
#t2004
#cBioinformatics
#index763151
#% 
#!
  
#*Modeling splice sites with Bayes networks.
#@Deyou Cai,Arthur L. Delcher,Ben Kao,Simon Kasif
#t2000
#cBioinformatics
#index763152
#% 
#!
  
#*ATID: a web-oriented database for collection of publicly available alternative translational initiation events.
#@Jun Cai,Jing Zhang,Ying Huang,Yanda Li
#t2005
#cBioinformatics
#index763153
#% 
#!
  
#*SPLASH: structural pattern localization analysis by sequential histograms.
#@Andrea Califano
#t2000
#cBioinformatics
#index763155
#% 
#!
  
#*OCRE: a novel domain made of imperfect, aromatic-rich octamer repeats.
#@Isabelle Callebaut,Jean Paul Mornon
#t2005
#cBioinformatics
#index763156
#% 
#!
  
#*BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge.
#@Laurence Calzone,François Fages,Sylvain Soliman
#t2006
#cBioinformatics
#index763157
#% 
#!
  
#*FastContact: rapid estimate of contact and binding free energies.
#@Carlos J. Camacho,Chao Zhang
#t2005
#cBioinformatics
#index763158
#% 
#!
  
#*Computational identification of human mitochondrial proteins based on homology to yeast mitochondrially targeted proteins.
#@J. M. Cameron,T. Hurd,B. H. Robinson
#t2005
#cBioinformatics
#index763159
#% 
#!
  
#*SChiSM: creating interactive web page annotations of molecular structure models using Chime.
#@Stephen A. Cammer
#t2000
#cBioinformatics
#index763160
#% 
#!
  
#*Integrating multi-attribute similarity networks for robust representation of the protein space.
#@Orhan Çamoglu,Tolga Can,Ambuj K. Singh
#t2006
#cBioinformatics
#index763161
#% 
#!
  
#*RAP: a new computer program for de novo identification of repeated sequences in whole genomes.
#@Davide Campagna,Chiara Romualdi,Nicola Vitulo,Micky Del Favero,Matej Lexa,Nicola Cannata,Giorgio Valle
#t2005
#cBioinformatics
#index763162
#% 
#!
  
#*Clustalnet: the joining of Clustal and CORBA.
#@Fabien Campagne
#t2000
#cBioinformatics
#index763163
#% 
#!
  
#*Batch mode generation of residue-based diagrams of proteins.
#@Fabien Campagne,Emmanuel Bettler,Gert Vriend,Harel Weinstein
#t2003
#cBioinformatics
#index763164
#% 
#!
  
#*New Analytical Techniques for the Interpretation of Microarray Data.
#@Colin Campbell
#t2003
#cBioinformatics
#index763165
#% 
#!
  
#*FPV: Fast Protein Visualization Using Java 3DTM.
#@Tolga Can,Yujun Wang,Yuan-Fang Wang,Jianwen Su
#t2003
#cBioinformatics
#index763169
#% 
#!
  
#*Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support.
#@Payan Canaran,Lincoln Stein,Doreen Ware
#t2006
#cBioinformatics
#index763170
#% 
#!
  
#*A cross-comparison of a large dataset of genes.
#@Gina Cannarozzi,Michael T. Hallett,J. Norberg,Xianghong Zhou
#t2000
#cBioinformatics
#index763171
#% 
#!
  
#*Simplifying amino acid alphabets by means of a branch and bound algorithm and substitution matrices.
#@Nicola Cannata,Stefano Toppo,Chiara Romualdi,Giorgio Valle
#t2002
#cBioinformatics
#index763172
#% 
#!
  
#*MollDE: a homology modeling framework you can click with.
#@Adrian A. Canutescu,Roland L. Dunbrack Jr.
#t2005
#cBioinformatics
#index763175
#% 
#!
  
#*Enhanced recognition of protein transmembrane domains with prediction-based structural profiles.
#@Baoqiang Cao,Aleksey A. Porollo,Rafal Adamczak,Mark Jarrell,Jaroslaw Meller
#t2006
#cBioinformatics
#index763176
#% 
#!
  
#*A naive Bayes model to predict coupling between seven transmembrane domain receptors, and G-proteins.
#@Jack Cao,Rosemarie Panetta,Shiyi Yue,Alain Steyaert,Michele Young-Bellido,Sultan Ahmad
#t2003
#cBioinformatics
#index763177
#% 
#!
  
#*PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order.
#@Gilles Caraux,Sylvie Pinloche
#t2005
#cBioinformatics
#index763180
#% 
#!
  
#*Codon adaptation index as a measure of dominating codon bias.
#@Alessandra Carbone,Andrey Zinovyev,François Képès
#t2003
#cBioinformatics
#index763181
#% 
#!
  
#*Electrophoretic data classification for phylogenetics and biostatistics.
#@Gianluigi Cardinali,Francesco Maraziti,Sabrina Selvi
#t2003
#cBioinformatics
#index763182
#% 
#!
  
#*Network structures and algorithms in Bioconductor.
#@Vincent J. Carey,Jeff Gentry,Elizabeth Whalen,Robert Gentleman
#t2005
#cBioinformatics
#index763183
#% 
#!
  
#*IMAGEne I: clustering and ranking of I.M.A.G.E. cDNA clones corresponding to known genes.
#@M. Cariaso,P. Folta,M. Wagner,Tom Kuczmarski,G. Lennon
#t1999
#cBioinformatics
#index763185
#% 
#!
  
#*Methodological aspects of the genetic dissection of gene expression.
#@Örjan Carlborg,D. J. De Koning,Kenneth F. Manly,Elissa J. Chesler,Robert W. Williams,C. S. Haley
#t2005
#cBioinformatics
#index763186
#% 
#!
  
#*Simulating complex traits influenced by genes with fuzzy-valued effects in pedigreed populations.
#@C. Carleos,F. Rodriguez,H. Lamelas,J. A. Baro
#t2003
#cBioinformatics
#index763187
#% 
#!
  
#*REMORA: a pilot in the ocean of BioMoby web-services.
#@Sébastien Carrère,Jérôme Gouzy
#t2006
#cBioinformatics
#index763189
#% 
#!
  
#*Protein classification using probabilistic chain graphs and the Gene Ontology structure.
#@Steven Carroll,Vladimir Pavlovic
#t2006
#cBioinformatics
#index763190
#% 
#!
  
#*MASV - Multiple (BLAST) Annotation System Viewer.
#@Kim Carter,Matthew I. Bellgard
#t2003
#cBioinformatics
#index763191
#% 
#!
  
#*Gene co-expression network topology provides a framework for molecular characterization of cellular state.
#@Scott L. Carter,Christian M. Brechbühler,Michael Griffin,Andrew T. Bond
#t2004
#cBioinformatics
#index763192
#% 
#!
  
#*MatInspector and beyond: promoter analysis based on transcription factor binding sites.
#@K. Cartharius,Kornelie Frech,Korbinian Grote,Bernward Klocke,Manuela Haltmeier,Andreas Klingenhoff,Matthias Frisch,M. Bayerlein,Thomas Werner
#t2005
#cBioinformatics
#index763194
#% 
#!
  
#*DNA assembly with gaps (Dawg): simulating sequence evolution.
#@Reed A. Cartwright
#t2005
#cBioinformatics
#index763195
#% 
#!
  
#*The design of Jemboss: a graphical user interface to EMBOSS.
#@Tim Carver,Alan J. Bleasby
#t2003
#cBioinformatics
#index763196
#% 
#!
  
#*ACT: the Artemis comparison tool.
#@Tim J. Carver,Kim Rutherford,Matthew Berriman,Marie-Adèle Rajandream,Bart Barrell,Julian Parkhill
#t2005
#cBioinformatics
#index763197
#% 
#!
  
#*GDPC: connecting researchers with multiple integrated data sources.
#@Terry M. Casstevens,Edward S. Buckler
#t2004
#cBioinformatics
#index763198
#% 
#!
  
#*TROLL-Tandem Repeat Occurrence Locator.
#@Adalberto T. Castelo,Wellington Martins,Guang R. Gao
#t2002
#cBioinformatics
#index763199
#% 
#!
  
#*GeneMerge - Post-genomic Analysis, Data Mining, and Hypothesis Testing.
#@Cristian I. Castillo-Davis,Daniel L. Hartl
#t2003
#cBioinformatics
#index763200
#% 
#!
  
#*GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
#@Tiziana Castrignanò,Paolo D'Onorio De Meo,Giorgio Grillo,Sabino Liuni,Flavio Mignone,Ivano Giuseppe Talamo,Graziano Pesole
#t2006
#cBioinformatics
#index763201
#% 
#!
  
#*A non-linear optimization procedure to estimate distances and instantaneous substitution rate matrices under the GTR model.
#@Daniele Catanzaro,Raffaele Pesenti,Michel C. Milinkovitch
#t2006
#cBioinformatics
#index763202
#% 
#!
  
#*ViTO: tool for refinement of protein sequence-structure alignments.
#@Vincent Catherinot,Gilles Labesse
#t2004
#cBioinformatics
#index763203
#% 
#!
  
#*Preferred in vivo ubiquitination sites.
#@André Catic,Cal T. Collins,George M. Church,Hidde L. Ploegh
#t2004
#cBioinformatics
#index763204
#% 
#!
  
#*Gene Unscrambler for detangling scrambled genes in ciliates.
#@Andre R. O. Cavalcanti,Laura F. Landweber
#t2004
#cBioinformatics
#index763205
#% 
#!
  
#*Mapping SNPs to protein sequence and structure data.
#@Antonio Cavallo,Andrew C. R. Martin
#t2005
#cBioinformatics
#index763206
#% 
#!
  
#*ISYMOD: a knowledge warehouse for the identification, assembly and analysis of bacterial integrated systems.
#@Julie Chabalier,Cécile Capponi,Yves Quentin,Gwennaele Fichant
#t2005
#cBioinformatics
#index763208
#% 
#!
  
#*Designing and executing scientific workflows with a programmable integrator.
#@Monica Chagoyen,M. Erdem Kurul,Pedro A. de Alarcón,José María Carazo,Amarnath Gupta
#t2004
#cBioinformatics
#index763209
#% 
#!
  
#*Fragment assembly with short reads.
#@Mark Chaisson,Pavel A. Pevzner,Haixu Tang
#t2004
#cBioinformatics
#index763210
#% 
#!
  
#*Computational antisense oligo prediction with a neural network model.
#@Alistair M. Chalk,Erik L. L. Sonnhammer
#t2002
#cBioinformatics
#index763211
#% 
#!
  
#*Sfixem - graphical sequence feature display in Java.
#@Alistair M. Chalk,Martin Wennerberg,Erik L. L. Sonnhammer
#t2004
#cBioinformatics
#index763212
#% 
#!
  
#*GOAnno: GO annotation based on multiple alignment.
#@Frédéric Chalmel,Aurélie Lardenois,Julie Dawn Thompson,Jean Muller,José-Alain Sahel,Thierry Léveillard,Olivier Poch
#t2005
#cBioinformatics
#index763213
#% 
#!
  
#*Unsupervised classification of noisy chromosomes.
#@Tony Y. T. Chan
#t2001
#cBioinformatics
#index763214
#% 
#!
  
#*Structure clustering features on the Sfold Web server.
#@Chi Yu Chan,Charles E. Lawrence,Ye Ding
#t2005
#cBioinformatics
#index763215
#% 
#!
  
#*The mutated subsequence problem and locating conserved genes.
#@Ho-Leung Chan,Tak Wah Lam,Wing-Kin Sung,Prudence W. H. Wong,Siu-Ming Yiu,X. Fan
#t2005
#cBioinformatics
#index763216
#% 
#!
  
#*SYMMETREE: whole-tree analysis of differential diversification rates.
#@Kai M. A. Chan,Brian R. Moore
#t2005
#cBioinformatics
#index763217
#% 
#!
  
#*Database-driven Multi Locus Sequence Typing (MLST) of bacterial pathogens.
#@Man-Suen Chan,Martin C. J. Maiden,Brian G. Spratt
#t2001
#cBioinformatics
#index763218
#% 
#!
  
#*Protein motif extraction with neuro-fuzzy optimization.
#@Bill C. H. Chang,Saman K. Halgamuge
#t2002
#cBioinformatics
#index763219
#% 
#!
  
#*A greedier approach for finding tag SNPs.
#@Chia-Jung Chang,Yao-Ting Huang,Kun-Mao Chao
#t2006
#cBioinformatics
#index763220
#% 
#!
  
#*DNA polymorphism detector: an automated tool that searches for allelic matches in public databases for discrepancies found in clone or cDNA sequences.
#@Chih-Yu (Carol) Chang,Joshua LaBaer
#t2005
#cBioinformatics
#index763221
#% 
#!
  
#*An enhanced Java graph applet interface for visualizing interactomes.
#@Aaron N. Chang,Jason McDermott,Ram Samudrala
#t2005
#cBioinformatics
#index763222
#% 
#!
  
#*Design and Assessment of A Fast Algorithm for Identifying Specific Probes for Human and Mouse Genes.
#@Pei-chin Chang,Konan Peck
#t2003
#cBioinformatics
#index763223
#% 
#!
  
#*GAPSCORE: finding gene and protein names one word at a time.
#@Jeffrey T. Chang,Hinrich Schütze,Russ B. Altman
#t2004
#cBioinformatics
#index763224
#% 
#!
  
#*Calign: aligning sequences with restricted affine gap penalties.
#@Kun-Mao Chao
#t1999
#cBioinformatics
#index763226
#% 
#!
  
#*A comparative phylogenetic approach for dating whole genome duplication events.
#@Brad A. Chapman,John E. Bowers,Stefan R. Schulze,Andrew H. Paterson
#t2004
#cBioinformatics
#index763232
#% 
#!
  
#*Using biplots to interpret gene expression patterns in plants.
#@Scott Chapman,Peer Schenk,Kemal Kazan,John Manners
#t2002
#cBioinformatics
#index763233
#% 
#!
  
#*Online synonymous codon usage analyses with the ade4 and seqinR packages.
#@D. Charif,Jean Thioulouse,J. R. Lobry,Guy Perrière
#t2005
#cBioinformatics
#index763236
#% 
#!
  
#*Spectrum: spectral analysis of phylogenetic data.
#@Michael A. Charleston
#t1998
#cBioinformatics
#index763237
#% 
#!
  
#*Time accelerated Monte Carlo simulations of biological networks using the binomial r-leap method.
#@Abhijit Chatterjee,Kapil Mayawala,Jeremy S. Edwards,Dionisios G. Vlachos
#t2005
#cBioinformatics
#index763238
#% 
#!
  
#*TLCQA: quantitative study of thin-layer chromatography.
#@Foo-Tim Chau,Tsz-Pun Chan,Jing Wang
#t1998
#cBioinformatics
#index763239
#% 
#!
  
#*Oligonucleotide properties determination and primer designing: a critical examination of predictions.
#@Sreenivas Chavali,Anubha Mahajan,Rubina Tabassum,Souvik Maiti,Dwaipayan Bharadwaj
#t2005
#cBioinformatics
#index763240
#% 
#!
  
#*BEST: Binding-site Estimation Suite of Tools.
#@Dongsheng Che,Shane T. Jensen,Liming Cai,Jun S. Liu
#t2005
#cBioinformatics
#index763241
#% 
#!
  
#*Assessing sequence comparison methods with the average precision criterion.
#@Zhuoran Chen
#t2003
#cBioinformatics
#index763245
#% 
#!
  
#*An effective structure learning method for constructing gene networks.
#@Xue-wen Chen,Gopalakrishna Anantha,Xinkun Wang
#t2006
#cBioinformatics
#index763247
#% 
#!
  
#*ESTviewer: a web interface for visualizing mouse, rat, cattle, pig and chicken conserved ESTs in human genes and human alternatively spliced variants.
#@Feng-Chi Chen,Trees-Juen Chuang
#t2005
#cBioinformatics
#index763248
#% 
#!
  
#*An iterative refinement algorithm for consistency based multiple structural alignment methods.
#@Yu Chen,Gordon M. Crippen
#t2006
#cBioinformatics
#index763249
#% 
#!
  
#*Probe rank approaches for gene selection in oligonucleotide arrays with a small number of replicates.
#@Dung-Tsa Chen,James J. Chen,Seng-jaw Soong
#t2005
#cBioinformatics
#index763251
#% 
#!
  
#*Analysis of variance components in gene expression data.
#@James J. Chen,Robert R. Delongchamp,Chen-An Tsai,Huey-miin Hsueh,Frank Sistare,Karol L. Thompson,Varsha G. Desai,James C. Fuscoe
#t2004
#cBioinformatics
#index763252
#% 
#!
  
#*Rainbow: a toolbox for phylogenetic supertree construction and analysis.
#@Duhong Chen,Oliver Eulenstein,David Fernández-Baca
#t2004
#cBioinformatics
#index763253
#% 
#!
  
#*ZooDDD: a cross-species database for digital differential display analysis.
#@Yun-Ching Chen,Chung-Der Hsiao,Wen-Dar Lin,Chung-Ming Hu,Pung-Pung Hwang,Jan-Ming Ho
#t2006
#cBioinformatics
#index763254
#% 
#!
  
#*Increasing confidence of protein interactomes using network topological metrics.
#@Jin Chen,Wynne Hsu,Mong-Li Lee,See-Kiong Ng
#t2006
#cBioinformatics
#index763255
#% 
#!
  
#*SubLoc: a server/client suite for protein subcellular location based on SOAP.
#@Hu Chen,Ni Huang,Zhirong Sun
#t2006
#cBioinformatics
#index763256
#% 
#!
  
#*Ratio statistics of gene expression levels and applications to microarray data analysis.
#@Yidong Chen,Vishnu G. Kamat,Edward R. Dougherty,Michael L. Bittner,Paul S. Meltzer,Jeffrey M. Trent
#t2002
#cBioinformatics
#index763259
#% 
#!
  
#*Prediction of protein-protein interactions using random decision forest framework.
#@Xue-wen Chen,Mei Liu
#t2005
#cBioinformatics
#index763260
#% 
#!
  
#*Gene name ambiguity of eukaryotic nomenclatures.
#@Lifeng Chen,Hongfang Liu,Carol Friedman
#t2005
#cBioinformatics
#index763261
#% 
#!
  
#*Prediction of splice sites with dependency graphs and their expanded bayesian networks.
#@Te-Ming Chen,Chung-Chin Lu,Wen-Hsiung Li
#t2005
#cBioinformatics
#index763263
#% 
#!
  
#*The Binding Database: data management and interface design.
#@Xi Chen,Yuhmei Lin,Ming Liu,Michael K. Gilson
#t2002
#cBioinformatics
#index763264
#% 
#!
  
#*Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle.
#@Hong-Chu Chen,Hsiao-Ching Lee,Tsai-Yun Lin,Wen-Hsiung Li,Bor-Sen Chen
#t2004
#cBioinformatics
#index763265
#% 
#!
  
#*DNACompress: fast and effective DNA sequence compression.
#@Xin Chen,Ming Li,Bin Ma,John Tromp
#t2002
#cBioinformatics
#index763267
#% 
#!
  
#*Gene selection for oligonucleotide array: an approach using PM probe level data.
#@Dung-Tsa Chen,Sue-Hwa Lin,Seng-jaw Soong
#t2004
#cBioinformatics
#index763268
#% 
#!
  
#*TargetDB: a target registration database for structural genomics projects.
#@Li Chen,Rose Oughtred,Helen M. Berman,John D. Westbrook
#t2004
#cBioinformatics
#index763270
#% 
#!
  
#*Incremental generation of summarized clustering hierarchy for protein family analysis.
#@Chien-Yu Chen,Yen-Jen Oyang,Hsueh-Fen Juan
#t2004
#cBioinformatics
#index763271
#% 
#!
  
#*A case study in genome-level fragment assembly.
#@Ting Chen,Steven Skiena
#t2000
#cBioinformatics
#index763272
#% 
#!
  
#*Using imperfect secondary structure predictions to improve molecular structure computations.
#@Cheng Che Chen,Jaswinder Pal Singh,Russ B. Altman
#t1999
#cBioinformatics
#index763273
#% 
#!
  
#*ChemDB: a public database of small molecules and related chemoinformatics resources.
#@Jonathan H. Chen,Sanjay Joshua Swamidass,Yimeng Dou,Jocelyne Bruand,Pierre Baldi
#t2005
#cBioinformatics
#index763274
#% 
#!
  
#*A stochastic differential equation model for quantifying transcriptional regulatory network in .
#@Kuang-Chi Chen,Tse-Yi Wang,Huei-Hun Tseng,Chi-Ying F. Huang,Cheng-Yan Kao
#t2005
#cBioinformatics
#index763275
#% 
#!
  
#*A new measure of the robustness of biochemical networks.
#@Bor-Sen Chen,Yu-Chao Wang,Wei-Sheng Wu,Wen-Hsiung Li
#t2005
#cBioinformatics
#index763276
#% 
#!
  
#*Noise-induced cooperative behavior in a multicell system.
#@Luonan Chen,Ruiqi Wang,Tianshou Zhou,Kazuyuki Aihara
#t2005
#cBioinformatics
#index763277
#% 
#!
  
#*Understanding protein dispensability through machine-learning analysis of high-throughput data.
#@Yu Chen,Dong Xu
#t2005
#cBioinformatics
#index763278
#% 
#!
  
#*Negative correlation between compositional symmetries and local recombination rates.
#@Liang Chen,Hongyu Zhao
#t2005
#cBioinformatics
#index763279
#% 
#!
  
#*Protein structure alignment by deterministic annealing.
#@Luonan Chen,Tianshou Zhou,Yun Tang
#t2005
#cBioinformatics
#index763280
#% 
#!
  
#*A machine learning information retrieval approach to protein fold recognition.
#@Jianlin Cheng,Pierre Baldi
#t2006
#cBioinformatics
#index763281
#% 
#!
  
#*DiffTool: building, visualizing and querying protein clusters.
#@Farid Chetouani,Philippe Glaser,Frank Kunst
#t2002
#cBioinformatics
#index763282
#% 
#!
  
#*A metadata approach to query interoperation between molecular biology databases.
#@Kei-Hoi Cheung,Prakash M. Nadkarni,Dong-Guk Shin
#t1998
#cBioinformatics
#index763283
#% 
#!
  
#*MeKE: Discovering the Functions of Gene Products from Biomedical Literature Via Sentence Alignment.
#@Jung-Hsien Chiang,Hsu-Chun Yu
#t2003
#cBioinformatics
#index763286
#% 
#!
  
#*GIS: a biomedical text-mining system for gene information discovery.
#@Jung-Hsien Chiang,Hsu-Chun Yu,Huai-Jen Hsu
#t2004
#cBioinformatics
#index763287
#% 
#!
  
#*Bifurcation discovery tool.
#@Vijay Chickarmane,Sri R. Paladugu,Frank T. Bergmann,Herbert M. Sauro
#t2005
#cBioinformatics
#index763288
#% 
#!
  
#*ProteoMix: an integrated and flexible system for interactively analyzing large numbers of protein sequences.
#@Eisuke Chikayama,Atsushi Kurotani,Yutaka Kuroda,Shigeyuki Yokoyama
#t2004
#cBioinformatics
#index763289
#% 
#!
  
#*Global snapshot of a protein interaction network - a percolation based approach.
#@Chen-Shan Chin,Manoj Pratim Samanta
#t2003
#cBioinformatics
#index763290
#% 
#!
  
#*OrthologID: automation of genome-scale ortholog identification within a parsimony framework.
#@Joanna C. Chiu,Ernest K. Lee,Mary G. Egan,Indra Neil Sarkar,Gloria M. Coruzzi,Robert DeSalle
#t2006
#cBioinformatics
#index763292
#% 
#!
  
#*Identification of biochemical networks by S-tree based genetic programming.
#@Dong-Yeon Cho,Kwang-Hyun Cho,Byoung-Tak Zhang
#t2006
#cBioinformatics
#index763293
#% 
#!
  
#*Bayesian hierarchical error model for analysis of gene expression data.
#@HyungJun Cho,Jae K. Lee
#t2004
#cBioinformatics
#index763294
#% 
#!
  
#*Neural network schemes for detecting rare events in human genomic DNA.
#@Wooyoung Choe,Okan K. Ersoy,Minou Bina
#t2000
#cBioinformatics
#index763295
#% 
#!
  
#*PhyloDraw: a phylogenetic tree drawing system.
#@Jeong-Hyeon Choi,Ho-Youl Jung,Hye-Sun Kim,Hwan-Gue Cho
#t2000
#cBioinformatics
#index763296
#% 
#!
  
#*PLATCOM: a Platform for Computational Comparative Genomics.
#@Kwangmin Choi,Yu Ma,Jeong-Hyeon Choi,Sun Kim
#t2005
#cBioinformatics
#index763297
#% 
#!
  
#*Differential coexpression analysis using microarray data and its application to human cancer.
#@Jung Kyoon Choi,Ungsik Yu,Ook Joon Yoo,Sangsoo Kim
#t2005
#cBioinformatics
#index763298
#% 
#!
  
#*Good spaced seeds for homology search.
#@Kwok Pui Choi,Fanfan Zeng,Louxin Zhang
#t2004
#cBioinformatics
#index763299
#% 
#!
  
#*Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes.
#@Kuo-Chen Chou
#t2005
#cBioinformatics
#index763300
#% 
#!
  
#*CRAWview: for viewing splicing variation, gene families, and polymorphism in clusters of ESTs and full-length sequences.
#@A. Chou,J. Burke
#t1999
#cBioinformatics
#index763301
#% 
#!
  
#*Predicting protein localization in budding Yeast.
#@Kuo-Chen Chou,Yu-Dong Cai
#t2005
#cBioinformatics
#index763302
#% 
#!
  
#*DNA sequence quality trimming and vector removal.
#@Hui-Hsien Chou,Michael H. Holmes
#t2001
#cBioinformatics
#index763303
#% 
#!
  
#*Picky: oligo microarray design for large genomes.
#@Hui-Hsien Chou,An-Ping Hsia,Denise L. Mooney,Patrick S. Schnable
#t2004
#cBioinformatics
#index763304
#% 
#!
  
#*Genetic test bed for feature selection.
#@Ashish Choudhary,Marcel Brun,Jianping Hua,James Lowey,Edward Suh,Edward R. Dougherty
#t2006
#cBioinformatics
#index763305
#% 
#!
  
#*Intervention in a family of Boolean networks.
#@Ashish Choudhary,Aniruddha Datta,Michael L. Bittner,Edward R. Dougherty
#t2006
#cBioinformatics
#index763306
#% 
#!
  
#*GenAlyzer: interactive visualization of sequence similarities between entire genomes.
#@Jomuna V. Choudhuri,Chris Schleiermacher,Stefan Kurtz,Robert Giegerich
#t2004
#cBioinformatics
#index763307
#% 
#!
  
#*Promoter modeling: the case study of mammalian histone promoters.
#@Rajesh Chowdhary,R. Ayesha Ali,Werner Albig,Detlef Doenecke,Vladimir B. Bajic
#t2005
#cBioinformatics
#index763308
#% 
#!
  
#*Biomarker discovery in microarray gene expression data with Gaussian processes.
#@Wei Chu,Zoubin Ghahramani,Francesco Falciani,David L. Wild
#t2005
#cBioinformatics
#index763309
#% 
#!
  
#*A Statistical Problem for Inference to Regulatory Structure from Associations of Gene Expression Measurements with Microarrays.
#@Tianjiao Chu,Clark Glymour,Richard Scheines,Peter Spirtes
#t2003
#cBioinformatics
#index763310
#% 
#!
  
#*Ribosomal RNA as molecular barcodes: a simple correlation analysis without sequence alignment.
#@K. H. Chu,C. P. Li,J. Qi
#t2006
#cBioinformatics
#index763311
#% 
#!
  
#*Comparison of Li-Wong and loglinear mixed models for the statistical analysis of oligonucleotide arrays.
#@Tzu-Ming Chu,B. S. Weir,Russell D. Wolfinger
#t2004
#cBioinformatics
#index763312
#% 
#!
  
#*Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions.
#@Hon Nian Chua,Wing-Kin Sung,Limsoon Wong
#t2006
#cBioinformatics
#index763313
#% 
#!
  
#*A comparative method for identification of gene structures and alternatively spliced variants.
#@Trees-Juen Chuang,Feng-Chi Chen,Meng-Yuan Chou
#t2004
#cBioinformatics
#index763314
#% 
#!
  
#*Perfect phylogeny haplotyper: haplotype inferral using a tree model.
#@Ren Hua Chung,Dan Gusfield
#t2003
#cBioinformatics
#index763315
#% 
#!
  
#*Fractional populations in multiple gene inheritance.
#@Myung-Hoon Chung,Chul Koo Kim,Kyun Nahm
#t2003
#cBioinformatics
#index763316
#% 
#!
  
#*Design of long oligonucleotide probes for functional gene detection in a microbial community.
#@Won-Hyong Chung,Sung-Keun Rhee,Xiu-Feng Wan,Jin-Woo Bae,Zhe-Xue Quan,Yong-Ha Park
#t2005
#cBioinformatics
#index763317
#% 
#!
  
#*Feature selection for genetic sequence classification.
#@Nadia A. Chuzhanova,Antonia J. Jones,Steve Margetts
#t1998
#cBioinformatics
#index763318
#% 
#!
  
#*The WHy domain mediates the response to desiccation in plants and bacteria.
#@Francesca Ciccarelli,Peer Bork
#t2005
#cBioinformatics
#index763319
#% 
#!
  
#*GeConT: gene context analysis.
#@R. Ciria,Cei Abreu-Goodger,Enrique Morett,Enrique Merino
#t2004
#cBioinformatics
#index763321
#% 
#!
  
#*BlastXtract - a new way of exploring translated searches.
#@Marcus J. Claesson,Douwe van Sinderen
#t2005
#cBioinformatics
#index763322
#% 
#!
  
#*The Jalview Java alignment editor.
#@Michele E. Clamp,James A. Cuff,Stephen M. J. Searle,Geoffrey J. Barton
#t2004
#cBioinformatics
#index763323
#% 
#!
  
#*Machine learning of functional class from phenotype data.
#@Amanda Clare,Ross D. King
#t2002
#cBioinformatics
#index763324
#% 
#!
  
#*Functional bioinformatics for .
#@Amanda Clare,Andreas Karwath,Helen Ougham,Ross D. King
#t2006
#cBioinformatics
#index763325
#% 
#!
  
#*Functional bioinformatics for .
#@Amanda Clare,Andreas Karwath,Helen Ougham,Ross D. King
#t2006
#cBioinformatics
#index763326
#% 
#!
  
#*Rank order metrics for quantifying the association of sequence features with gene regulation.
#@Neil D. Clarke,Joshua A. Granek
#t2003
#cBioinformatics
#index763329
#% 
#!
  
#*Large-scale analysis of non-synonymous coding region single nucleotide polymorphisms.
#@Robert J. Clifford,Michael Edmonson,Cu Nguyen,Kenneth H. Buetow
#t2004
#cBioinformatics
#index763335
#% 
#!
  
#*Disperse: a simple and efficient approach to parallel database searching.
#@Raphaël Clifford,Aaron J. Mackey
#t2000
#cBioinformatics
#index763336
#% 
#!
  
#*Predicting reliable regions in protein sequence alignments.
#@Melissa S. Cline,Richard Hughey,Kevin Karplus
#t2002
#cBioinformatics
#index763337
#% 
#!
  
#*Energy landscape of -point mutants of an RNA molecule.
#@Peter Clote,Jérôme Waldispühl,Behshad Behzadi,Jean-Marc Steyaert
#t2005
#cBioinformatics
#index763338
#% 
#!
  
#*A bioinformatic screen for novel A-I RNA editing sites reveals recoding editing in BC10.
#@Daniel R. Clutterbuck,A. Leroy,M. A. O'Connell,C. A. M. Semple
#t2005
#cBioinformatics
#index763340
#% 
#!
  
#*Prediction of unfolded segments in a protein sequence based on amino acid composition.
#@Karen Coeytaux,Anne Poupon
#t2005
#cBioinformatics
#index763344
#% 
#!
  
#*Representation of amino acids as five-bit or three-bit patterns for filtering protein databases.
#@Avril Coghlan,Dónall A. Mac Dónaill,Nigel H. Buttimore
#t2001
#cBioinformatics
#index763345
#% 
#!
  
#*SNOMAD (Standardization and NOrmalization of MicroArray Data): web-accessible gene expression data analysis.
#@Carlo Colantuoni,George Henry,Scott Zeger,Jonathan Pevsner
#t2002
#cBioinformatics
#index763346
#% 
#!
  
#*Construction of optimal quality control for oligo arrays.
#@Charles J. Colbourn,Alan C. H. Ling,Martin Tompa
#t2002
#cBioinformatics
#index763347
#% 
#!
  
#*Expression-based monitoring of transcription factor activity: the TELiS database.
#@Steve W. Cole,Weihong Yan,Zoran Galic,Jesusa Arevalo,Jerome A. Zack
#t2005
#cBioinformatics
#index763348
#% 
#!
  
#*Detecting the impact of sequencing errors on SAGE data.
#@Jacques Colinge,Georg Feger
#t2001
#cBioinformatics
#index763349
#% 
#!
  
#*ISEApeaks: an Excel platform for GeneScan and Immunoscope data retrieval, management and analysis.
#@A. Collette,A. Six
#t2002
#cBioinformatics
#index763351
#% 
#!
  
#*Describing ancient horizontal gene transfers at the nucleotide and gene levels by comparative pathogenicity island genometrics.
#@F. Collyn,L. Guy,M. Marceau,M. Simonet,Claude-Alain H. Roten
#t2006
#cBioinformatics
#index763354
#% 
#!
  
#*Geno3D: automatic comparative molecular modelling of protein.
#@Christophe Combet,Martin Jambon,Gilbert Deléage,Christophe Geourjon
#t2002
#cBioinformatics
#index763356
#% 
#!
  
#*ClusPro: an automated docking and discrimination method for the prediction of protein complexes.
#@Stephen R. Comeau,David W. Gatchell,Sandor Vajda,Carlos J. Camacho
#t2004
#cBioinformatics
#index763357
#% 
#!
  
#*K-Estimator: calculation of the number of nucleotide substitutions per site and the confidence intervals.
#@Josep M. Comeron
#t1999
#cBioinformatics
#index763358
#% 
#!
  
#*Genetic Simulation Library.
#@John S. Conery,Michael Lynch
#t1999
#cBioinformatics
#index763360
#% 
#!
  
#*Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.
#@Ana Conesa,Stefan Götz,Juan Miguel García-Gómez,Javier Terol,Manuel Talón,Montserrat Robles
#t2005
#cBioinformatics
#index763361
#% 
#!
  
#*maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments.
#@Ana Conesa,María José Nueda,Alberto Ferrer,Manuel Talón
#t2006
#cBioinformatics
#index763362
#% 
#!
  
#*Gene finding for the helical cytokines.
#@Darrell Conklin,Betty Haldeman,Zeren Gao
#t2005
#cBioinformatics
#index763363
#% 
#!
  
#*Association of nucleotide patterns with gene function classes: application to human 3' untranslated sequences.
#@Darrell Conklin,Inge Jonassen,Rein Aasland,William R. Taylor
#t2002
#cBioinformatics
#index763364
#% 
#!
  
#*A computer-driven approach to PCR-based differential screening, alternative to differential display.
#@G. G. Consalez,A. Cabibbo,A. Corradi,C. Alli,M. Sardella,R. Sitia,R. Fesce
#t1999
#cBioinformatics
#index763365
#% 
#!
  
#*Domain Fishing: a first step in protein comparative modelling.
#@Bruno Contreras-Moreira,Paul A. Bates
#t2002
#cBioinformatics
#index763366
#% 
#!
  
#*A benchmark for Affymetrix GeneChip expression measures.
#@Leslie Cope,Rafael A. Irizarry,Harris A. Jaffee,Zhijin Wu,Terence P. Speed
#t2004
#cBioinformatics
#index763367
#% 
#!
  
#*BAPS 2: enhanced possibilities for the analysis of genetic population structure.
#@Jukka Corander,Patrik Waldmann,Pekka Marttinen,Mikko J. Sillanpää
#t2004
#cBioinformatics
#index763368
#% 
#!
  
#*Lateral gene transfer of a dermonecrotic toxin between spiders and bacteria.
#@Matthew H. J. Cordes,Greta J. Binford
#t2006
#cBioinformatics
#index763369
#% 
#!
  
#*BioRAT: extracting biological information from full-length papers.
#@David P. A. Corney,Bernard F. Buxton,William B. Langdon,David T. Jones
#t2004
#cBioinformatics
#index763370
#% 
#!
  
#*Browsing protein families via the `Rich Family Description' format.
#@Florence Corpet,Jérôme Gouzy,Daniel Kahn
#t1999
#cBioinformatics
#index763372
#% 
#!
  
#*Biological sequence analysis through the one-dimensional percolation transform and its enhanced version.
#@Luciano da Fontoura Costa
#t2005
#cBioinformatics
#index763375
#% 
#!
  
#*Mathematical characterization of three-dimensional gene expression patterns.
#@Luciano da Fontoura Costa,M. S. Barbosa,Edson Tadeu Monteiro Manoel,Johannes Streicher,Gerd B. Müller
#t2004
#cBioinformatics
#index763376
#% 
#!
  
#*The Graphical Query Language: a tool for analysis of gene expression time-courses.
#@Ivan G. Costa,Alexander Schönhuth,Alexander Schliep
#t2005
#cBioinformatics
#index763377
#% 
#!
  
#*Improved database searches for orthologous sequences by conditioning on outgroup sequences.
#@Philip J. Cotter,Daniel R. Caffrey,Denis C. Shields
#t2002
#cBioinformatics
#index763378
#% 
#!
  
#*Transcription-associated protein families are primarily taxon-specific.
#@Richard M. R. Coulson,Anton J. Enright,Christos A. Ouzounis
#t2001
#cBioinformatics
#index763379
#% 
#!
  
#*Wrapping SRS with CORBA: from textual data to distributed objects.
#@Thierry Coupaye
#t1999
#cBioinformatics
#index763380
#% 
#!
  
#*caCORE: A common infrastructure for cancer informatics.
#@Peter A. Covitz,Frank W. Hartel,Carl F. Schaefer,Sherri de Coronado,Gilberto Fragoso,Himanso Sahni,Scott Gustafson,Kenneth H. Buetow
#t2003
#cBioinformatics
#index763382
#% 
#!
  
#*Shufflet: shuffling sequences while conserving the k-let counts.
#@Eivind Coward
#t1999
#cBioinformatics
#index763383
#% 
#!
  
#*Detecting periodic patterns in biological sequences.
#@Eivind Coward,Finn Drabløs
#t1998
#cBioinformatics
#index763384
#% 
#!
  
#*Genotype transposer: automated genotype manipulation for linkage disequilibrium analysis.
#@David G. Cox,Federico Canzian
#t2001
#cBioinformatics
#index763385
#% 
#!
  
#*A nearest-neighboring-end algorithm for genetic mapping.
#@Charles F. Crane,Yan M. Crane
#t2005
#cBioinformatics
#index763386
#% 
#!
  
#*Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit.
#@Xinping Cui,Jin Xu,Rehana Asghar,Pascal Condamine,Jan T. Svensson,Steve Wanamaker,Nils Stein,Mikeal Roose,Timothy J. Close
#t2005
#cBioinformatics
#index763387
#% 
#!
  
#*MADE4: an R package for multivariate analysis of gene expression data.
#@Aedín C. Culhane,Jean Thioulouse,Guy Perrière,Desmond G. Higgins
#t2005
#cBioinformatics
#index763388
#% 
#!
  
#*The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources.
#@Torsten Crass,Iris Antes,Rico Basekow,Peer Bork,Christian Buning,Maik Christensen,Holger Claussen,Christian Ebeling,Peter Ernst,Valérie Gailus-Durner,Karl-Heinz Glatting,Rolf Gohla,Frank Gößling,Korbinian Grote,Karsten R. Heidtke,Alexander Herrmann,Sean O'Keeffe,O. Kießlich,Sven Kolibal,Jan O. Korbel,Thomas Lengauer,Ines Liebich,Mark van der Linden,Hannes Luz,Kathrin Meissner,Christian von Mering,Heinz-Theodor Mevissen,Hans-Werner Mewes,Holger Michael,Martin Mokrejs,Tobias Müller,Heike Pospisil,Matthias Rarey,Jens G. Reich,Ralf Schneider,Dietmar Schomburg,Steffen Schulze-Kremer,Knut Schwarzer,Ingolf Sommer,Stephan Springstubbe,Sándor Suhai,Gnanasekaran Thoppae,Martin Vingron,Jens Warfsmann,Thomas Werner,Daniel Wetzler,Edgar Wingender,Ralf Zimmer
#t2004
#cBioinformatics
#index763390
#% 
#!
  
#*A fast, stochastic threading algorithm for proteins.
#@Oakley H. Crawford
#t1999
#cBioinformatics
#index763391
#% 
#!
  
#*CRANN: detecting adaptive evolution in protein-coding DNA sequences.
#@C. J. Creevey,James O. McInerney
#t2003
#cBioinformatics
#index763392
#% 
#!
  
#*Clann: investigating phylogenetic information through supertree analyses.
#@C. J. Creevey,James O. McInerney
#t2005
#cBioinformatics
#index763393
#% 
#!
  
#*Mining gene expression databases for association rules.
#@Chad Creighton,Samir Hanash
#t2003
#cBioinformatics
#index763394
#% 
#!
  
#*Gene Time Epression Warper: a tool for alignment, template matching and visualization of gene expression time series.
#@Jo Criel,Elena Tsiporkova
#t2006
#cBioinformatics
#index763395
#% 
#!
  
#*An alternative model of amino acid replacement.
#@Gavin E. Crooks,Steven E. Brenner
#t2005
#cBioinformatics
#index763396
#% 
#!
  
#*Pairwise alignment incorporating dipeptide covariation.
#@Gavin E. Crooks,Richard E. Green,Steven E. Brenner
#t2005
#cBioinformatics
#index763397
#% 
#!
  
#*TM or not TM: transmembrane protein prediction with low false positive rate using DAS-TMfilter.
#@Miklós Cserzo,Frank Eisenhaber,Birgit Eisenhaber,István Simon
#t2004
#cBioinformatics
#index763398
#% 
#!
  
#*ProtEST: protein multiple sequence alignments from expressed sequence tags.
#@James A. Cuff,Ewan Birney,Michele E. Clamp,Geoffrey J. Barton
#t2000
#cBioinformatics
#index763400
#% 
#!
  
#*JPred: a consensus secondary structure prediction server.
#@James A. Cuff,Michele E. Clamp,Asim S. Siddiqui,M. Finlay,Geoffrey J. Barton
#t1998
#cBioinformatics
#index763401
#% 
#!
  
#*Analysing the ability to retain sidechain hydrogen-bonds in mutant proteins.
#@Alison L. Cuff,Robert W. Janes,Andrew C. R. Martin
#t2006
#cBioinformatics
#index763402
#% 
#!
  
#*Characterizing the dynamic connectivity between genes by variable parameter regression and Kalman filtering based on temporal gene expression data.
#@Qinghua Cui,Bing Liu,Tianzi Jiang,Songde Ma
#t2005
#cBioinformatics
#index763403
#% 
#!
  
#*Mapping genome-genome epistasis: a high-dimensional model.
#@Yuehua Cui,Rongling Wu
#t2005
#cBioinformatics
#index763404
#% 
#!
  
#*Between-group analysis of microarray data.
#@Aedín C. Culhane,Guy Perrière,Elizabeth C. Considine,Thomas G. Cotter,Desmond G. Higgins
#t2002
#cBioinformatics
#index763405
#% 
#!
  
#*Microarray data mining with visual programming.
#@Tomaz Curk,Janez Demsar,Qikai Xu,Gregor Leban,Uros Petrovic,Ivan Bratko,Gad Shaulsky,Blaz Zupan
#t2005
#cBioinformatics
#index763406
#% 
#!
  
#*An efficient Monte Carlo approach to assessing statistical significance in genomic studies.
#@D. Y. Lin
#t2005
#cBioinformatics
#index763407
#% 
#!
  
#*Analysing microarray data using modular regulation analysis.
#@R. Keira Curtis,Martin D. Brand
#t2004
#cBioinformatics
#index763408
#% 
#!
  
#*DNase II is a member of the phospholipase D superfamily.
#@Iwona A. Cymerman,Gregor Meiss,Janusz M. Bujnicki
#t2005
#cBioinformatics
#index763412
#% 
#!
  
#*GeneRecords: a relational database for GenBank flat file parsing and data manipulation in personal computers.
#@P. D'Addabbo,Luca Lenzi,Federica Facchin,Raffaella Casadei,Silvia Canaider,Lorenza Vitale,Flavia Frabetti,Paolo Carinci,Maria Zannotti,Pierluigi Strippoli
#t2004
#cBioinformatics
#index763413
#% 
#!
  
#*MILVA: An interactive tool for the exploration of multidimensional microarray data.
#@Davide D'Alimonte,David Lowe,Ian T. Nabney,Vassilis Mersinias,Colin P. Smith
#t2005
#cBioinformatics
#index763414
#% 
#!
  
#*IWoCS: analyzing ribosomal intergenic transcribed spacers configuration and taxonomic relationships.
#@Giuseppe D'Auria,Ravindra Pushker,Francisco Rodríguez-Valera
#t2006
#cBioinformatics
#index763415
#% 
#!
  
#*SWIFT (sequence-wide investigation with Fourier transform): a software tool for identifying proteins of a given class from the unannotated genome sequence.
#@G. D'Avenio,M. Grigioni,G. Orefici,R. Creti
#t2005
#cBioinformatics
#index763416
#% 
#!
  
#*Classification of microarrays to nearest centroids.
#@Alan R. Dabney
#t2005
#cBioinformatics
#index763417
#% 
#!
  
#*ClaNC: point-and-click software for classifying microarrays to nearest centroids.
#@Alan R. Dabney
#t2006
#cBioinformatics
#index763418
#% 
#!
  
#*Using convex hulls to extract interaction interfaces from known structures.
#@Panos Dafas,Dan M. Bolser,Jacek Gomoluch,Jong Park,Michael Schroeder
#t2004
#cBioinformatics
#index763419
#% 
#!
  
#*Bayesian classifiers for detecting HGT using fixed and variable order markov models of genomic signatures.
#@Daniel Dalevi,Devdatt P. Dubhashi,Malte Hermansson
#t2006
#cBioinformatics
#index763420
#% 
#!
  
#*StrAl: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time.
#@Deniz Dalli,Andreas Wilm,Indra Mainz,Gerhard Steger
#t2006
#cBioinformatics
#index763421
#% 
#!
  
#*A simple procedure for estimating the false discovery rate.
#@Cyril Dalmasso,Philippe Broët,Thierry Moreau
#t2005
#cBioinformatics
#index763422
#% 
#!
  
#*Calculation of Helix Packing Angles in Protein Structures.
#@James A. R. Dalton,Ioannis Michalopoulos,David R. Westhead
#t2003
#cBioinformatics
#index763423
#% 
#!
  
#*A brief history of genome research and bioinformatics in France.
#@Antoine Danchin
#t2000
#cBioinformatics
#index763424
#% 
#!
  
#*Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors: combining experimental and computational approaches.
#@Thomas Dandekar,Katrin Beyer,Peer Bork,Mary-Rose Kenealy,Kostas Pantopoulos,Mathias W. Hentze,Vera Sonntag-Buck,Gilles Flouriot,Frank Gannon,Sonja Schreiber
#t1998
#cBioinformatics
#index763427
#% 
#!
  
#*Extracting human protein interactions from MEDLINE using a full-sentence parser.
#@Nikolai Daraselia,Anton Yuryev,Sergei Egorov,Svetlana Novichkova,Alexander Nikitin,Ilya Mazo
#t2004
#cBioinformatics
#index763429
#% 
#!
  
#*TopoICE-R: 3D visualization modeling the topology of DNA recombination.
#@Isabel K. Darcy,Robert G. Scharein
#t2006
#cBioinformatics
#index763430
#% 
#!
  
#*GRIL: genome rearrangement and inversion locator.
#@Aaron E. Darling,Bob Mau,Frederick R. Blattner,Nicole T. Perna
#t2004
#cBioinformatics
#index763435
#% 
#!
  
#*DNA-BAR: distinguisher selection for DNA barcoding.
#@Bhaskar DasGupta,Kishori M. Konwar,Ion I. Mandoiu,Alexander A. Shvartsman
#t2005
#cBioinformatics
#index763437
#% 
#!
  
#*Protein function prediction using the Protein Link EXplorer (PLEX).
#@Shailesh V. Date,Edward M. Marcotte
#t2005
#cBioinformatics
#index763439
#% 
#!
  
#*External control in Markovian genetic regulatory networks: the imperfect information case.
#@Aniruddha Datta,Ashish Choudhary,Michael L. Bittner,Edward R. Dougherty
#t2004
#cBioinformatics
#index763440
#% 
#!
  
#*Comparisons and validation of statistical clustering techniques for microarray gene expression data.
#@Susmita Datta,Somnath Datta
#t2003
#cBioinformatics
#index763441
#% 
#!
  
#*Empirical Bayes screening of many p-values with applications to microarray studies.
#@Susmita Datta,Somnath Datta
#t2005
#cBioinformatics
#index763442
#% 
#!
  
#*An empirical bayes adjustment to increase the sensitivity of detecting differentially expressed genes in microarray experiments.
#@Susmita Datta,Glen A. Satten,Dale J. Benos,Jiazeng Xia,Martin J. Heslin,Somnath Datta
#t2004
#cBioinformatics
#index763443
#% 
#!
  
#*MetaGeneAlyse: analysis of integrated transcriptional and metabolite data.
#@Carsten O. Daub,Sebastian Kloska,Joachim Selbig
#t2003
#cBioinformatics
#index763444
#% 
#!
  
#*GARSA: genomic analysis resources for sequence annotation.
#@Alberto M. R. Dávila,Daniel M. Lorenzini,Pablo N. Mendes,Thiago S. Satake,Gabriel R. Sousa,Linair Maria Campos,Camila J. Mazzoni,Glauber Wagner,Paulo F. Pires,Edmundo C. Grisard,Maria Cláudia Reis Cavalcanti,Maria Luiza Machado Campos
#t2005
#cBioinformatics
#index763446
#% 
#!
  
#*PIBASE: a comprehensive database of structurally defined protein interfaces.
#@Fred P. Davis,Andrej Sali
#t2005
#cBioinformatics
#index763447
#% 
#!
  
#*DIG - a system for gene annotation and functional discovery.
#@Mark DeLong,Guang Yao,Quanli Wang,Adrian Dobra,Esther P. Black,Jeffrey T. Chang,Andrea Bild,Mike West,Joseph Nevins,Holly Dressman
#t2005
#cBioinformatics
#index763450
#% 
#!
  
#*Roundup: a multi-genome repository of orthologs and evolutionary distances.
#@Todd F. DeLuca,I-Hsien Wu,Jian Pu,Thomas Monaghan,Leonid Peshkin,Saurav Singh,Dennis P. Wall
#t2006
#cBioinformatics
#index763451
#% 
#!
  
#*Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA.
#@T. Z. DeSantis Jr.,I. Dubosarskiy,S. R. Murray,Gary L. Andersen
#t2003
#cBioinformatics
#index763452
#% 
#!
  
#*SCORE: predicting the core of protein models.
#@Charlotte M. Deane,Quentin Kaas,Tom L. Blundell
#t2001
#cBioinformatics
#index763453
#% 
#!
  
#*An extensible automated protein annotation tool: standardizing input and output using validated XML.
#@S. Vishnu V. Deevi,Andrew C. R. Martin
#t2006
#cBioinformatics
#index763455
#% 
#!
  
#*SpliceMachine: predicting splice sites from high-dimensional local context representations.
#@Sven Degroeve,Yvan Saeys,Bernard De Baets,Pierre Rouzé,Yves Van de Peer
#t2005
#cBioinformatics
#index763456
#% 
#!
  
#*Bioinorganic motifs: towards functional classification of metalloproteins.
#@Kirill Degtyarenko
#t2000
#cBioinformatics
#index763457
#% 
#!
  
#*A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments.
#@John P. Dekker,Anthony Fodor,Richard W. Aldrich,Gary Yellen
#t2004
#cBioinformatics
#index763459
#% 
#!
  
#*STAR: an algorithm to Search for Tandem Approximate Repeats.
#@Olivier Delgrange,Eric Rivals
#t2004
#cBioinformatics
#index763464
#% 
#!
  
#*VarMixt: efficient variance modelling for the differential analysis of replicated gene expression data.
#@Paul Delmar,Stéphane Robin,Jean-Jacques Daudin
#t2005
#cBioinformatics
#index763465
#% 
#!
  
#*An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.
#@Mauro Delorenzi,Terence P. Speed
#t2002
#cBioinformatics
#index763466
#% 
#!
  
#*Fuzzy C-means Method for Clustering Microarray Data.
#@Doulaye Dembélé,Philippe Kastner
#t2003
#cBioinformatics
#index763468
#% 
#!
  
#*An ontology for collaborative construction and analysis of cellular pathways.
#@Emek Demir,Ozgun Babur,Ugur Dogrusöz,Attila Gürsoy,A. Ayaz,Gürcan Gülesir,Gurkan Nisanci,Rengül Çetin-Atalay
#t2004
#cBioinformatics
#index763469
#% 
#!
  
#*PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways.
#@Emek Demir,Ozgun Babur,Ugur Dogrusöz,Attila Gürsoy,Gurkan Nisanci,Rengül Çetin-Atalay,Mehmet Ozturk
#t2002
#cBioinformatics
#index763470
#% 
#!
  
#*Segmentation of cDNA Microarray Spots Using Markov Random Field Modeling.
#@Omer Demirkaya,Musa H. Asyali,Mohamed M. Shoukri
#t2005
#cBioinformatics
#index763471
#% 
#!
  
#*Mapping gene ontology to proteins based on protein-protein interaction data.
#@Minghua Deng,Zhidong Tu,Fengzhu Sun,Ting Chen
#t2004
#cBioinformatics
#index763472
#% 
#!
  
#*BagBoosting for tumor classification with gene expression data.
#@Marcel Dettling
#t2004
#cBioinformatics
#index763479
#% 
#!
  
#*Boosting for Tumor Classification with Gene Expression Data.
#@Marcel Dettling,Peter Bühlmann
#t2003
#cBioinformatics
#index763480
#% 
#!
  
#*Evolutionary algorithms for finding optimal gene sets in microarray prediction.
#@J. M. Deutsch
#t2003
#cBioinformatics
#index763481
#% 
#!
  
#*Identification of plant microRNA homologs.
#@Tobias Dezulian,Michael Remmert,Javier F. Palatnik,Detlef Weigel,Daniel H. Huson
#t2006
#cBioinformatics
#index763482
#% 
#!
  
#*Genetic network inference: from co-expression clustering to reverse engineering.
#@Patrik D'haeseleer,Shoudan Liang,Roland Somogyi
#t2000
#cBioinformatics
#index763483
#% 
#!
  
#*Cellware-a multi-algorithmic software for computational systems biology.
#@Pawan Dhar,Tan Chee Meng,Sandeep Somani,Li Ye,Anand Sairam,Mandar Chitre,Hao Zhu,Kishore R. Sakharkar
#t2004
#cBioinformatics
#index763484
#% 
#!
  
#*Grid Cellware: the first grid-enabled tool for modelling and simulating cellular processes.
#@Pawan Dhar,Tan Chee Meng,Sandeep Somani,Li Ye,Kishore R. Sakharkar,Arun Krishnan,Azmi B. M. Ridwan,Sebastian Ho Kok Wah,Mandar Chitre,Hao Zhu
#t2005
#cBioinformatics
#index763485
#% 
#!
  
#*Diametrical clustering for identifying anti-correlated gene clusters.
#@Inderjit S. Dhillon,Edward M. Marcotte,Usman Roshan
#t2003
#cBioinformatics
#index763486
#% 
#!
  
#*Dynamic model based algorithms for screening and genotyping over 100K SNPs on oligonucleotide microarrays.
#@Xiaojun Di,Hajime Matsuzaki,Teresa A. Webster,Earl Hubbell,Guoying Liu,Shoulian Dong,Dan Bartell,Jing Huang,Richard Chiles,Geoffrey Yang,Mei-mei Shen,David Kulp,Giulia C. Kennedy,Rui Mei,Keith W. Jones,Simon Cawley
#t2005
#cBioinformatics
#index763487
#% 
#!
  
#*Complex networks approach to gene expression driven phenotype imaging.
#@L. Diambra,L. da F. Costa
#t2005
#cBioinformatics
#index763488
#% 
#!
  
#*Markovian negentropies in bioinformatics. 1. A picture of footprints after the interaction of the HIV-1 -RNA packaging region with drugs.
#@Humberto González Díaz,Ronal Ramos de Armas,Reinaldo Molina Ruiz
#t2003
#cBioinformatics
#index763490
#% 
#!
  
#*GeneANOVA-gene expression analysis of variance.
#@Gilles Didier,Pierre Brézellec,Elisabeth Remy,Alain Hénaut
#t2002
#cBioinformatics
#index763495
#% 
#!
  
#*MineBlast: a literature presentation service supporting protein annotation by data mining of BLAST results.
#@Guido Dieterich,Uwe Kärst,Jürgen Wehland,Lothar Jänsch
#t2005
#cBioinformatics
#index763497
#% 
#!
  
#*VIS-O-BAC: exploratory visualization of functional genome studies from bacteria.
#@Guido Dieterich,Uwe Kärst,Jürgen Wehland,Lothar Jänsch
#t2006
#cBioinformatics
#index763498
#% 
#!
  
#*Prediction of 3D neighbours of molecular surface patches in proteins by artificial neural networks.
#@Sabine Dietmann,Cornelius Frömmel
#t2002
#cBioinformatics
#index763499
#% 
#!
  
#*Mayday-a microarray data analysis workbench.
#@Janko Dietzsch,Nils Gehlenborg,Kay Nieselt
#t2006
#cBioinformatics
#index763500
#% 
#!
  
#*Proteins associated with diseases show enhanced sequence correlation between charged residues.
#@Ruxandra I. Dima,D. Thirumalai
#t2004
#cBioinformatics
#index763501
#% 
#!
  
#*RECSIM and INDSTATS: probabilities of identity in general genealogies.
#@Polixeni Dimitropoulou,Chris Cannings
#t2003
#cBioinformatics
#index763502
#% 
#!
  
#*Unsupervised Feature Selection Via Two-way Ordering in Gene Expression Analysis.
#@Chris H. Q. Ding
#t2003
#cBioinformatics
#index763503
#% 
#!
  
#*MedKit: a helper toolkit for automatic mining of MEDLINE/PubMed citations.
#@Jing Ding,Daniel Berleant
#t2005
#cBioinformatics
#index763504
#% 
#!
  
#*Multi-class protein fold recognition using support vector machines and neural networks.
#@Chris H. Q. Ding,Inna Dubchak
#t2001
#cBioinformatics
#index763505
#% 
#!
  
#*PubMed Assistant: a biologist-friendly interface for enhanced PubMed search.
#@Jing Ding,Laron M. Hughes,Daniel Berleant,Andy W. Fulmer,Eve Syrkin Wurtele
#t2006
#cBioinformatics
#index763506
#% 
#!
  
#*Using the biological taxonomy to access biological literature with PathBinderH.
#@Jing Ding,Karthikeyan Viswanathan,Daniel Berleant,Laron M. Hughes,Eve Syrkin Wurtele,Daniel A. Ashlock,Julie A. Dickerson,Andy W. Fulmer,Patrick S. Schnable
#t2005
#cBioinformatics
#index763507
#% 
#!
  
#*LDA - a java-based linkage disequilibrium analyzer.
#@Keyue Ding,Kaixin Zhou,Fuchu He,Yan Shen
#t2003
#cBioinformatics
#index763508
#% 
#!
  
#*BioIE: extracting informative sentences from the biomedical literature.
#@Anna Divoli,Teresa K. Attwood
#t2005
#cBioinformatics
#index763509
#% 
#!
  
#*Structural bioinformatics of DNA: a web-based tool for the analysis of molecular dynamics results and structure prediction.
#@Surjit B. Dixit,David L. Beveridge
#t2006
#cBioinformatics
#index763511
#% 
#!
  
#*MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms.
#@Amira Djebbari,Svetlana Karamycheva,Eleanor Howe,John Quackenbush
#t2005
#cBioinformatics
#index763512
#% 
#!
  
#*DIAMOD: display and modeling of DNA bending.
#@M. Dlakic,R. E. Harrington
#t1998
#cBioinformatics
#index763513
#% 
#!
  
#*Characterizing dye bias in microarray experiments.
#@K. K. Dobbin,Ernest S. Kawasaki,D. W. Petersen,R. M. Simon
#t2005
#cBioinformatics
#index763514
#% 
#!
  
#*Comparison of microarray designs for class comparison and class discovery.
#@Kevin Dobbin,Richard Simon
#t2002
#cBioinformatics
#index763515
#% 
#!
  
#*Statistical Design of Reverse Dye Microarrays.
#@Kevin Dobbin,Joanna H. Shih,Richard Simon
#t2003
#cBioinformatics
#index763516
#% 
#!
  
#*Comment on 'Evaluation of the gene-specific dye bias in cDNA microarray experiments'.
#@Kevin Dobbin,Joanna H. Shih,Richard Simon
#t2005
#cBioinformatics
#index763517
#% 
#!
  
#*Correcting log ratios for signal saturation in cDNA microarrays.
#@Lori E. Dodd,Edward L. Korn,Lisa M. McShane,G. V. R. Chandramouli,Eric Y. Chuang
#t2004
#cBioinformatics
#index763518
#% 
#!
  
#*Quantitative assessment of filter-based cDNA microarrays: gene expression profiles of human T-lymphoma cell lines.
#@J. M. Dodson,P. T. Charles,D. A. Stenger,J. J. Pancrazio
#t2002
#cBioinformatics
#index763519
#% 
#!
  
#*Patika: a Web interface for analyzing biological pathways through advanced querying and visualization.
#@Ugur Dogrusöz,E. Z. Erson,Erhan Giral,Emek Demir,Ozgun Babur,Ahmet Cetintas,R. Colak
#t2006
#cBioinformatics
#index763523
#% 
#!
  
#*SPrCY: comparison of structural predictions in the Saccharomyces cerevisiae genome.
#@Todd J. Dolinsky,P. M. J. Burgers,Kevin Karplus,Nathan A. Baker
#t2004
#cBioinformatics
#index763525
#% 
#!
  
#*Disulfide by Design: a computational method for the rational design of disulfide bonds in proteins.
#@Alan A. Dombkowski
#t2003
#cBioinformatics
#index763527
#% 
#!
  
#*Applying GIFT, a Gene Interactions Finder in Text, to fly literature.
#@Núria Domedel-Puig,Lorenz Wernisch
#t2005
#cBioinformatics
#index763528
#% 
#!
  
#*CoC: a database of universally conserved residues in protein folds.
#@Jason E. Donald,Isaac A. Hubner,Veronica Rotemberg,Eugene I. Shakhnovich,Leonid A. Mirny
#t2005
#cBioinformatics
#index763530
#% 
#!
  
#*Determining functional specificity from protein sequences.
#@Jason E. Donald,Eugene I. Shakhnovich
#t2005
#cBioinformatics
#index763531
#% 
#!
  
#*TFBScluster: a resource for the characterization of transcriptional regulatory networks.
#@Ian John Donaldson,Michael Chapman,Berthold Göttgens
#t2005
#cBioinformatics
#index763532
#% 
#!
  
#*Application of latent semantic analysis to protein remote homology detection.
#@Qiwen Dong,Xiaolong Wang,Lei Lin
#t2006
#cBioinformatics
#index763533
#% 
#!
  
#*On the trail of protein sequences.
#@Russell F. Doolittle
#t2000
#cBioinformatics
#index763534
#% 
#!
  
#*Selecton: a server for detecting evolutionary forces at a single amino-acid site.
#@Adi Doron-Faigenboim,Adi Stern,Itay Mayrose,Eran Bacharach,Tal Pupko
#t2005
#cBioinformatics
#index763540
#% 
#!
  
#*IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.
#@Zsuzsanna Dosztányi,Veronika Csizmok,Peter Tompa,István Simon
#t2005
#cBioinformatics
#index763541
#% 
#!
  
#*SCide: Identification of Stabilization Centers in Proteins.
#@Zsuzsanna Dosztányi,Csaba Magyar,Gábor E. Tusnády,István Simon
#t2003
#cBioinformatics
#index763542
#% 
#!
  
#*Amino acid similarity matrices based on force fields.
#@Zsuzsanna Dosztányi,Andrew E. Torda
#t2001
#cBioinformatics
#index763543
#% 
#!
  
#*ICBS: a database of interactions between protein chains mediated by ?-sheet formation.
#@Yimeng Dou,Pierre-François Baisnée,Gianluca Pollastri,Yann Pécout,James Nowick,Pierre Baldi
#t2004
#cBioinformatics
#index763544
#% 
#!
  
#*Easier threading through web-based comparisons and cross-validations.
#@Dominique Douguet,Gilles Labesse
#t2001
#cBioinformatics
#index763545
#% 
#!
  
#*Towards the in silico identification of class II restricted T-cell epitopes: a partial least squares iterative self-consistent algorithm for affinity prediction.
#@Irini A. Doytchinova,Darren R. Flower
#t2003
#cBioinformatics
#index763546
#% 
#!
  
#*An associative analysis of gene expression array data.
#@Igor Dozmorov,Michael Centola
#t2003
#cBioinformatics
#index763547
#% 
#!
  
#*Clustering of non-polar contacts in proteins.
#@Finn Drabløs
#t1999
#cBioinformatics
#index763548
#% 
#!
  
#*Mining HIV Dynamics Using Independent Component Analysis.
#@Sorin Draghici,Frank M. Graziano,Samira Y. Kettoola,Ishwar K. Sethi,George Towfic
#t2003
#cBioinformatics
#index763549
#% 
#!
  
#*Noise Sampling Method: An ANOVA Approach Allowing Robust Selection of Differentially Regulated Genes Measured by DNA Microarrays.
#@Sorin Draghici,Olga Kulaeva,Bruce Hoff,Anton Petrov,Soheil Shams,Michael A. Tainsky
#t2003
#cBioinformatics
#index763550
#% 
#!
  
#*Predicting HIV drug resistance with neural networks.
#@Sorin Draghici,R. Brian Potter
#t2003
#cBioinformatics
#index763551
#% 
#!
  
#*Accurate identification of alternatively spliced exons using support vector machine.
#@Gideon Dror,Rotem Sorek,Ron Shamir
#t2005
#cBioinformatics
#index763553
#% 
#!
  
#*ISER: selection of differentially expressed genes from DNA array data by non-linear data transformations and local fitting.
#@R. D. Drummond,A. Pinheiro,C. S. Rocha,M. Menossi
#t2005
#cBioinformatics
#index763554
#% 
#!
  
#*PAL: an object-oriented programming library for molecular evolution and phylogenetics.
#@Alexei Drummond,Korbinian Strimmer
#t2001
#cBioinformatics
#index763555
#% 
#!
  
#*Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching.
#@Pan Du,Warren A. Kibbe,Simon M. Lin
#t2006
#cBioinformatics
#index763556
#% 
#!
  
#*Correcting the loss of cell-cycle synchrony in clustering analysis of microarray data using weights.
#@Fenghai Duan,Heping Zhang
#t2004
#cBioinformatics
#index763557
#% 
#!
  
#*Pelican: pedigree editor for linkage computer analysis.
#@Frank Dudbridge,Tim Carver,Gary W. Williams
#t2004
#cBioinformatics
#index763561
#% 
#!
  
#*Bagging to Improve the Accuracy of A Clustering Procedure.
#@Sandrine Dudoit,Jane Fridlyand
#t2003
#cBioinformatics
#index763562
#% 
#!
  
#*Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.
#@Jean-François Dufayard,Laurent Duret,Simon Penel,Manolo Gouy,François Rechenmann,Guy Perrière
#t2005
#cBioinformatics
#index763563
#% 
#!
  
#*mdclust-exploratory microarray analysis by multidimensional clustering.
#@Martin Dugas,Sylvia Merk,S. Breit,P. Dirschedl
#t2004
#cBioinformatics
#index763564
#% 
#!
  
#*Evolutionary simulations to detect functional lineage-specific genes.
#@Isabelle Dupanloup,Henrik Kaessmann
#t2006
#cBioinformatics
#index763566
#% 
#!
  
#*A simple method to predict protein-binding from aligned sequences - application to MHC superfamily and ß2-microglobulin.
#@Elodie Duprat,Marie-Paule Lefranc,Olivier Gascuel
#t2006
#cBioinformatics
#index763567
#% 
#!
  
#*Voro3D: 3D Voronoi tessellations applied to protein structures.
#@Franck Dupuis,Jean-François Sadoc,Rémi Jullien,Borislav Angelov,Jean Paul Mornon
#t2005
#cBioinformatics
#index763568
#% 
#!
  
#*Metabolomics spectral formatting, alignment and conversion tools (MSFACTs).
#@Anthony L. Duran,Jian Yang,Liangjiang Wang,Lloyd W. Sumner
#t2003
#cBioinformatics
#index763569
#% 
#!
  
#*Estimation of Transformation Parameters for Microarray Data.
#@Blythe Durbin,David M. Rocke
#t2003
#cBioinformatics
#index763571
#% 
#!
  
#*Variance-stabilizing transformations for two-color microarrays.
#@Blythe Durbin,David M. Rocke
#t2004
#cBioinformatics
#index763572
#% 
#!
  
#*EGene: a configurable pipeline generation system for automated sequence analysis.
#@Alan M. Durham,André Y. Kashiwabara,Fernando T. G. Matsunaga,Paulo H. Ahagon,Flávia Rainone,Leonardo Varuzza,Arthur Gruber
#t2005
#cBioinformatics
#index763574
#% 
#!
  
#*Importing MAGE-ML format microarray data into BioConductor.
#@Steffen Durinck,Joke Allemeersch,Vincent Carey,Yves Moreau,Bart De Moor
#t2004
#cBioinformatics
#index763575
#% 
#!
  
#*BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.
#@Steffen Durinck,Yves Moreau,Arek Kasprzyk,Sean Davis,Bart De Moor,Alvis Brazma,Wolfgang Huber
#t2005
#cBioinformatics
#index763576
#% 
#!
  
#*BAOBAB: a Java editor for large phylogenetic trees.
#@Julien Dutheil,Nicolas Galtier
#t2002
#cBioinformatics
#index763577
#% 
#!
  
#*J-Express: exploring gene expression data using Java.
#@B. Dysvik,Inge Jonassen
#t2001
#cBioinformatics
#index763578
#% 
#!
  
#*of protein structures and sequences for VMD.
#@John Eargle,Dan Wright,Zaida Luthey-Schulten
#t2006
#cBioinformatics
#index763579
#% 
#!
  
#*Multiple sequence alignment in parallel on a workstation cluster.
#@Justin Ebedes,Amitava Datta
#t2004
#cBioinformatics
#index763580
#% 
#!
  
#*Development and validation of a consistency based multiple structure alignment algorithm.
#@Jessica Ebert,Douglas L. Brutlag
#t2006
#cBioinformatics
#index763583
#% 
#!
  
#*Normalization of two-channel microarray experiments: a semiparametric approach.
#@J. E. Eckel,C. Gennings,Terry M. Therneau,L. D. Burgoon,D. R. Boverhof,T. R. Zacharewski
#t2005
#cBioinformatics
#index763584
#% 
#!
  
#*The Merck Gene Index browser: an extensible data integration system for gene finding, gene characterization and EST data mining.
#@Barbara A. Eckman,Jeffery S. Aaronson,J. A. Borkowski,W. J. Bailey,K. O. Elliston,A. R. Williamson,R. A. Blevins
#t1998
#cBioinformatics
#index763585
#% 
#!
  
#*Extending traditional query-based integration approaches for functional characterization of post-genomic data.
#@Barbara A. Eckman,Anthony Kosky,Leonardo A. Laroco Jr.
#t2001
#cBioinformatics
#index763586
#% 
#!
  
#*Profile hidden Markov models.
#@Sean R. Eddy
#t1998
#cBioinformatics
#index763587
#% 
#!
  
#*SATCHMO: Sequence Alignment and Tree Construction Using Hidden Markov Models.
#@Robert C. Edgar,Kimmen Sjölander
#t2003
#cBioinformatics
#index763588
#% 
#!
  
#*A comparison of scoring functions for protein sequence profile alignment.
#@Robert C. Edgar,Kimmen Sjölander
#t2004
#cBioinformatics
#index763589
#% 
#!
  
#*COACH: profile-profile alignment of protein families using hidden Markov models.
#@Robert C. Edgar,Kimmen Sjölander
#t2004
#cBioinformatics
#index763590
#% 
#!
  
#*A bioinformatics tool to select sequences for microarray studies of mouse models of oncogenesis.
#@Mary E. Edgerton,Ronald C. Taylor,John I. Powell,Lawrence Hunter,Richard Simon,Edison T. Liu
#t2002
#cBioinformatics
#index763591
#% 
#!
  
#*A Search for H/ACA SnoRNAs in Yeast Using MFE Secondary Structure Prediction.
#@Sverker Edvardsson,Paul P. Gardner,Anthony M. Poole,Michael D. Hendy,David Penny,Vincent Moulton
#t2003
#cBioinformatics
#index763592
#% 
#!
  
#*Non-linear Normalization and Background Correction in One-channel CDNA Microarray Studies.
#@David Edwards
#t2003
#cBioinformatics
#index763593
#% 
#!
  
#*BADASP: predicting functional specificity in protein families using ancestral sequences.
#@Richard J. Edwards,Denis C. Shields
#t2005
#cBioinformatics
#index763596
#% 
#!
  
#*Poxvirus Orthologous Clusters (POCs).
#@Angelika Ehlers,John Osborne,Stephanie Slack,Rachel L. Roper,Chris Upton
#t2002
#cBioinformatics
#index763600
#% 
#!
  
#*Gene Expression Dynamics Inspector (GEDI): for integrative analysis of expression profiles.
#@Gabriel S. Eichler,Sui Huang,Donald E. Ingber
#t2003
#cBioinformatics
#index763602
#% 
#!
  
#*Enhancing scatterplots with smoothed densities.
#@Paul H. C. Eilers,Jelle J. Goeman
#t2004
#cBioinformatics
#index763603
#% 
#!
  
#*Quantile smoothing of array CGH data.
#@Paul H. C. Eilers,Renée X. de Menezes
#t2005
#cBioinformatics
#index763604
#% 
#!
  
#*Outcome signature genes in breast cancer: is there a unique set?.
#@Liat Ein-Dor,Itai Kela,Gad Getz,David Givol,Eytan Domany
#t2005
#cBioinformatics
#index763605
#% 
#!
  
#*Mass Analysis Peptide Sequence Prediction (MAPSP).
#@Martin Eisenacher,Jürgen de Braaf,Simone König
#t2006
#cBioinformatics
#index763606
#% 
#!
  
#*Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries.
#@Frank Eisenhaber,Peer Bork
#t1999
#cBioinformatics
#index763607
#% 
#!
  
#*ChromoWheel: a new spin on eukaryotic chromosome visualization.
#@Sven Ekdahl,Erik L. L. Sonnhammer
#t2004
#cBioinformatics
#index763608
#% 
#!
  
#*Spot shape modelling and data transformations for microarrays.
#@Claus Thorn Ekstrøm,Søren Bak,Charlotte Kristensen,Mats Rudemo
#t2004
#cBioinformatics
#index763609
#% 
#!
  
#*Haplotypes histories as pathways of recombinations.
#@Nadia El-Mabrouk,Damian Labuda
#t2004
#cBioinformatics
#index763610
#% 
#!
  
#*Financing a future for public biological data.
#@L. B. Ellis,D. Kalumbi
#t1999
#cBioinformatics
#index763612
#% 
#!
  
#*Representing metabolic pathway information: an object-oriented approach.
#@L. B. Ellis,S. M. Speedie,R. McLeish
#t1998
#cBioinformatics
#index763614
#% 
#!
  
#*A comparison of sequence and structure protein domain families as a basis for structural genomics.
#@Arne Elofsson,Erik L. L. Sonnhammer
#t1999
#cBioinformatics
#index763615
#% 
#!
  
#*AgentCell: a digital single-cell assay for bacterial chemotaxis.
#@Thierry Emonet,Charles M. Macal,Michael J. North,Charles E. Wickersham,Philippe Cluzel
#t2005
#cBioinformatics
#index763616
#% 
#!
  
#*A strategy for assembling the maize (Zea mays L.) genome.
#@Scott J. Emrich,Srinivas Aluru,Yan Fu,Tsui-Jung Wen,Mahesh Narayanan,Ling Guo,Daniel A. Ashlock,Patrick S. Schnable
#t2004
#cBioinformatics
#index763617
#% 
#!
  
#*Probabilistic nucleotide assembling method for sequencing by hybridization.
#@Takaho A. Endo
#t2004
#cBioinformatics
#index763618
#% 
#!
  
#*MARAN: Normalizing Micro-array Data.
#@Kristof Engelen,Bert Coessens,Kathleen Marchal,Bart De Moor
#t2003
#cBioinformatics
#index763619
#% 
#!
  
#*A calibration method for estimating absolute expression levels from microarray data.
#@Kristof Engelen,Bart Naudts,Bart De Moor,Kathleen Marchal
#t2006
#cBioinformatics
#index763620
#% 
#!
  
#*Combo: a whole genome comparative browser.
#@Reinhard Engels,Tamara Yu,Chris Burge,Jill P. Mesirov,David DeCaprio,James E. Galagan
#t2006
#cBioinformatics
#index763621
#% 
#!
  
#*GeneRAGE: a robust algorithm for sequence clustering and domain detection.
#@Anton J. Enright,Christos A. Ouzounis
#t2000
#cBioinformatics
#index763623
#% 
#!
  
#*BioLayout-an automatic graph layout algorithm for similarity visualization.
#@Anton J. Enright,Christos A. Ouzounis
#t2001
#cBioinformatics
#index763624
#% 
#!
  
#*In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon.
#@Ivan Erill,Marcos Escribano,Susana Campoy,Jordi Barbé
#t2003
#cBioinformatics
#index763626
#% 
#!
  
#*A task framework for the web interface W2H.
#@Peter Ernst,Karl-Heinz Glatting,Sándor Suhai
#t2003
#cBioinformatics
#index763628
#% 
#!
  
#*Detection of unrelated proteins in sequences multiple alignments by using predicted secondary structures.
#@Mounir Errami,Christophe Geourjon,Gilbert Deléage
#t2003
#cBioinformatics
#index763631
#% 
#!
  
#*Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships.
#@Jordi Espadaler,Oriol Romero-Isart,Richard M. Jackson,Baldo Oliva
#t2005
#cBioinformatics
#index763632
#% 
#!
  
#*Characterization of the folding degree of proteins.
#@Ernesto Estrada
#t2002
#cBioinformatics
#index763633
#% 
#!
  
#*Recombination Analysis Tool (RAT): a program for the high-throughput detection of recombination.
#@Graham J. Etherington,Jo L. Dicks,Ian N. Roberts
#t2005
#cBioinformatics
#index763634
#% 
#!
  
#*The complexity of comparing reaction systems.
#@Mark Ettinger
#t2002
#cBioinformatics
#index763635
#% 
#!
  
#*RED: the analysis, management and dissemination of expressed sequence tags.
#@R. Everitt,S. E. Minnema,M. A. Wride,C. S. Koster,J. E. Hance,F. C. Mansergh,D. E. Rancourt
#t2002
#cBioinformatics
#index763638
#% 
#!
  
#*RNA movies: visualizing RNA secondary structure spaces.
#@Dirk Evers,Robert Giegerich
#t1999
#cBioinformatics
#index763639
#% 
#!
  
#*Visualization of expression clusters using Sammon's non-linear mapping.
#@Rob M. Ewing,J. Michael Cherry
#t2001
#cBioinformatics
#index763640
#% 
#!
  
#*MutaProt: a web interface for structural analysis of point mutations.
#@Eran Eyal,Rafael Najmanovich,Vladimir Sobolev,Marvin Edelman
#t2001
#cBioinformatics
#index763641
#% 
#!
  
#*EVA: continuous automatic evaluation of protein structure prediction servers.
#@Volker A. Eyrich,Marc A. Martí-Renom,Dariusz Przybylski,Mallur S. Madhusudhan,András Fiser,Florencio Pazos,Alfonso Valencia,Andrej Sali,Burkhard Rost
#t2001
#cBioinformatics
#index763642
#% 
#!
  
#*HELM: searching for helix motifs within protein sequences.
#@Angelo M. Facchiano
#t2000
#cBioinformatics
#index763643
#% 
#!
  
#*PowQ: a user-friendly package for the design of variance component multipoint linkage analysis studies.
#@Mario Falchi,Cesare Cappio Borlino
#t2006
#cBioinformatics
#index763648
#% 
#!
  
#*Fast tandem mass spectra-based protein identification regardless of the number of spectra or potential modifications examined.
#@Jayson Falkner,Philip Andrews
#t2005
#cBioinformatics
#index763649
#% 
#!
  
#*ProteomeCommons.org JAF: reference information and tools for proteomics.
#@J. A. Falkner,J. W. Falkner,P. C. Andrews
#t2006
#cBioinformatics
#index763650
#% 
#!
  
#*IRILmap: linkage map distance correction for intermated recombinant inbred lines/advanced recombinant inbred strains.
#@Matthieu Falque
#t2005
#cBioinformatics
#index763651
#% 
#!
  
#*Evaluation and optimization of clustering in gene expression data analysis.
#@A. Fazel Famili,Ganming Liu,Ziying Liu
#t2004
#cBioinformatics
#index763652
#% 
#!
  
#*iMap: a database-driven utility to integrate and access the genetic and physical maps of maize.
#@Zhiwei Fang,Karen C. Cone,Hector Sanchez-Villeda,Mary L. Polacco,Michael D. McMullen,Steven G. Schroeder,Jack M. Gardiner,Georgia L. Davis,Seth A. Havermann,Young-Sun Yim,Irie Vroh-Bi,Edward H. Coe
#t2003
#cBioinformatics
#index763653
#% 
#!
  
#*cMap: the comparative genetic map viewer.
#@Zhiwei Fang,Mary L. Polacco,Su-Shing Chen,Steven G. Schroeder,D. Hancock,Hector Sanchez-Villeda,Edward H. Coe
#t2003
#cBioinformatics
#index763654
#% 
#!
  
#*Identification of GPI anchor attachment signals by a Kohonen self-organizing map.
#@Niklaus Fankhauser,Pascal Mäser
#t2005
#cBioinformatics
#index763655
#% 
#!
  
#*Concepts to automate the theoretical design of effective antisense oligonucleotides.
#@Rosel Kretschmer-Kazemi Far,Wolfgang Nedbal,Georg Sczakiel
#t2001
#cBioinformatics
#index763656
#% 
#!
  
#*RED-T: utilizing the Ratios of Evolutionary Distances for determination of alternative phylogenetic events.
#@Kamyar Farahi,William B. Whitman,Eileen Kraemer
#t2003
#cBioinformatics
#index763657
#% 
#!
  
#*SWAPSC: sliding window analysis procedure to detect selective constraints.
#@Mario A. Fares
#t2004
#cBioinformatics
#index763658
#% 
#!
  
#*Prediction of disulfide connectivity in proteins.
#@Piero Fariselli,Rita Casadio
#t2001
#cBioinformatics
#index763659
#% 
#!
  
#*RCNPRED: prediction of the residue co-ordination numbers in proteins.
#@Piero Fariselli,Rita Casadio
#t2001
#cBioinformatics
#index763660
#% 
#!
  
#*SPEPlip: the detection of signal peptide and lipoprotein cleavage sites.
#@Piero Fariselli,Giacomo Finocchiaro,Rita Casadio
#t2003
#cBioinformatics
#index763662
#% 
#!
  
#*MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments.
#@Piero Fariselli,Michele Finelli,Davide Marchignoli,Pier Luigi Martelli,Ivan Rossi,Rita Casadio
#t2003
#cBioinformatics
#index763663
#% 
#!
  
#*Noise and rank-dependent geometrical filter improves sensitivity of highly specific discovery by microarrays.
#@Hassan M. Fathallah-Shaykh
#t2005
#cBioinformatics
#index763666
#% 
#!
  
#*A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.
#@Alexander V. Favorov,Mikhail S. Gelfand,Anna V. Gerasimova,Dmitry A. Ravcheev,Andrey A. Mironov,Vsevolod Makeev
#t2005
#cBioinformatics
#index763667
#% 
#!
  
#*AMiGA: the arthropodan mitochondrial genomes accessible database.
#@Pedro Cipriano Feijão,Lissiene Silva Neiva,Ana Maria Lima de Azeredo-Espin,Ana Cláudia Lessinger
#t2006
#cBioinformatics
#index763669
#% 
#!
  
#*DictyMOLD - a Dictyostelium discoideum genome browser database.
#@Marius Felder,Karol Szafranski,Rüdiger Lehmann,Ludwig Eichinger,Angelika A. Noegel,Matthias Platzer,Gernot Glöckner
#t2005
#cBioinformatics
#index763670
#% 
#!
  
#*Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis.
#@Kurt Fellenberg,Nicole C. Hauser,Benedikt Brors,Jörg D. Hoheisel,Martin Vingron
#t2002
#cBioinformatics
#index763671
#% 
#!
  
#*Ligand Depot: a data warehouse for ligands bound to macromolecules.
#@Zukang Feng,Li Chen,Himabindu Maddula,Ozgur Akcan,Rose Oughtred,Helen M. Berman,John D. Westbrook
#t2004
#cBioinformatics
#index763672
#% 
#!
  
#*CTRD: a fast applet for computing signed translocation distance between genomes.
#@WangSen Feng,Lusheng Wang,Daming Zhu
#t2004
#cBioinformatics
#index763673
#% 
#!
  
#*The Biopolymer Markup Language.
#@D. Fenyo
#t1999
#cBioinformatics
#index763675
#% 
#!
  
#*WebBLAST 2.0: an integrated solution for organizing and analyzing sequence data.
#@Prakash S. Ferlanti,Joseph F. Ryan,Izabela Makalowska,Andreas D. Baxevanis
#t1999
#cBioinformatics
#index763676
#% 
#!
  
#*YAdumper: extracting and translating large information volumes from relational databases to structured flat files.
#@José María Fernández,Alfonso Valencia
#t2004
#cBioinformatics
#index763679
#% 
#!
  
#*A more efficient search strategy for aging genes based on connectivity.
#@Luca Ferrarini,Luca Bertelli,Jacob Feala,Andrew D. McCulloch,Giovanni Paternostro
#t2005
#cBioinformatics
#index763682
#% 
#!
  
#*Disulfide connectivity prediction using secondary structure information and diresidue frequencies.
#@Fabrizio Ferrè,Peter Clote
#t2005
#cBioinformatics
#index763683
#% 
#!
  
#*PMUT: a web-based tool for the annotation of pathological mutations on proteins.
#@Carles Ferrer-Costa,Josep Lluis Gelpí,Leire Zamakola,Ivan Parraga,Xavier de la Cruz,Modesto Orozco
#t2005
#cBioinformatics
#index763684
#% 
#!
  
#*HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif.
#@Carles Ferrer-Costa,H. P. Shanahan,Susan Jones,Janet M. Thornton
#t2005
#cBioinformatics
#index763685
#% 
#!
  
#*GP3: GenePix post-processing program for automated analysis of raw microarray data.
#@M. R. Fielden,R. G. Halgren,E. Dere,T. R. Zacharewski
#t2002
#cBioinformatics
#index763687
#% 
#!
  
#*DNAVis: interactive visualization of comparative genome annotations.
#@Mark W. E. J. Fiers,Huub van de Wetering,Tim H. J. M. Peeters,Jarke J. van Wijk,Jan Peter Nap
#t2006
#cBioinformatics
#index763692
#% 
#!
  
#*BIAS: Bioinformatics Integrated Application Software.
#@G. Finak,N. Godin,M. Hallett,F. Pepin,Z. Rajabi,V. Srivastava,Z. Tang
#t2005
#cBioinformatics
#index763693
#% 
#!
  
#*2HAPI: A Microarray Data Analysis System.
#@J. Lynn Fink,Scott Drewes,Hiren Patel,John B. Welsh,Daniel R. Masys,Jacques Corbeil,Michael Gribskov
#t2003
#cBioinformatics
#index763694
#% 
#!
  
#*iPfam: visualization of protein?Cprotein interactions in PDB at domain and amino acid resolutions.
#@Robert D. Finn,Mhairi Marshall,Alex Bateman
#t2005
#cBioinformatics
#index763695
#% 
#!
  
#*GenePicker: replicate analysis of Affymetrix gene expression microarrays.
#@Giacomo Finocchiaro,Paola Parise,Simone P. Minardi,Myriam Alcalay,Heiko Müller
#t2004
#cBioinformatics
#index763696
#% 
#!
  
#*Identification and quantification of disease-related gene clusters.
#@Gábor Firneisz,Idit Zehavi,Csaba Vermes,Anita Hanyecz,Joshua A. Frieman,Tibor T. Glant
#t2003
#cBioinformatics
#index763698
#% 
#!
  
#*Detecting overlapping coding sequences with pairwise alignments.
#@Andrew E. Firth,Chris M. Brown
#t2005
#cBioinformatics
#index763699
#% 
#!
  
#*Statistics of protein library construction.
#@Andrew E. Firth,Wayne M. Patrick
#t2005
#cBioinformatics
#index763700
#% 
#!
  
#*The Binding Interface Database (BID): A Compilation of Amino Acid Hot Spots in Protein Interfaces.
#@T. B. Fischer,K. V. Arunachalam,D. Bailey,V. Mangual,S. Bakhru,R. Russo,D. Huang,M. Paczkowski,V. Lalchandani,C. Ramachandra,B. Ellison,S. Galer,J. Shapley,E. Fuentes,J. Tsai
#t2003
#cBioinformatics
#index763701
#% 
#!
  
#*bioWidgets: data interaction components for genomics.
#@Steve Fischer,Jonathan Crabtree,Brian P. Brunk,M. Gibson,G. Christian Overton
#t1999
#cBioinformatics
#index763702
#% 
#!
  
#*Finding families for genomic ORFans.
#@Daniel Fischer,David Eisenberg
#t1999
#cBioinformatics
#index763703
#% 
#!
  
#*Erratum. Finding families for genomic ORFans.
#@Daniel Fischer,David Eisenberg
#t1999
#cBioinformatics
#index763704
#% 
#!
  
#*The PDB-Preview database: a repository of in-silico models of 'on-hold' PDB entries.
#@Daniel Fischer,Jakub Pas,Leszek Rychlewski
#t2004
#cBioinformatics
#index763705
#% 
#!
  
#*Predicting the oxidation state of cysteines by multiple sequence alignment.
#@András Fiser,István Simon
#t2000
#cBioinformatics
#index763708
#% 
#!
  
#*ModLoop: automated modeling of loops in protein structures.
#@András Fiser,Andrej Sali
#t2003
#cBioinformatics
#index763709
#% 
#!
  
#*A latent variable model for chemogenomic profiling.
#@Patrick Flaherty,Guri Giaever,Jochen Kumm,Michael I. Jordan,Adam P. Arkin
#t2005
#cBioinformatics
#index763711
#% 
#!
  
#*A novel method for automatic functional annotation of proteins.
#@Wolfgang Fleischmann,Steffen Möller,Alain Gateau,Rolf Apweiler
#t1999
#cBioinformatics
#index763712
#% 
#!
  
#*Automated ordering of fingerprinted clones.
#@Stephane Flibotte,Readman Chiu,Chris Fjell,Martin Krzywinski,Jacqueline E. Schein,Heesun Shin,Marco A. Marra
#t2004
#cBioinformatics
#index763713
#% 
#!
  
#*Threshold extraction in metabolite concentration data.
#@André Flöter,Jacques Nicolas,Torsten Schaub,Joachim Selbig
#t2004
#cBioinformatics
#index763715
#% 
#!
  
#*Statistical challenges in the analysis of two-dimensional difference gel electrophoresis experiments using DeCyder.
#@Imola K. Fodor,David O. Nelson,Michelle Alegria-Hartman,Kristin Robbins,Richard G. Langlois,Kenneth W. Turteltaub,Todd H. Corzett,Sandra L. McCutchen-Maloney
#t2005
#cBioinformatics
#index763716
#% 
#!
  
#*How independent are the appearances of n-mers in different genomes?
#@Yuriy Fofanov,Yi Luo,Charles Katili,Jim Wang,Yuri Belosludtsev,Thomas Powdrill,Chetan Belapurkar,Viacheslav Fofanov,Tong-Bin Li,Sergei Chumakov,B. Montgomery Pettitt
#t2004
#cBioinformatics
#index763717
#% 
#!
  
#*A framework for scientific data modeling and automated software development.
#@Rasmus H. Fogh,Wayne Boucher,Wim F. Vranken,Anne Pajon,Tim J. Stevens,T. N. Bhat,John D. Westbrook,John M. C. Ionides,Ernest D. Laue
#t2005
#cBioinformatics
#index763718
#% 
#!
  
#*The SSEA server for protein secondary structure alignment.
#@Paolo Fontana,Eckart Bindewald,Stefano Toppo,Riccardo Velasco,Giorgio Valle,Silvio C. E. Tosatto
#t2005
#cBioinformatics
#index763722
#% 
#!
  
#*Wavelets in bioinformatics and computational biology: state of art and perspectives.
#@Pietro Liò
#t2003
#cBioinformatics
#index763723
#% 
#!
  
#*Symmetry observations in long nucleotide sequences: a commentary on the Discovery Note of Qi and Cuticchia.
#@D. R. Forsdyke
#t2002
#cBioinformatics
#index763724
#% 
#!
  
#*VisRD--visual recombination detection.
#@Kristoffer Forslund,Daniel H. Huson,Vincent Moulton
#t2004
#cBioinformatics
#index763725
#% 
#!
  
#*Application of distance geometry to 3D visualization of sequence relationships.
#@M. Forster,A. Heath,M. Afzal
#t1999
#cBioinformatics
#index763726
#% 
#!
  
#*Classification using partial least squares with penalized logistic regression.
#@Gersende Fort,Sophie Lambert-Lacroix
#t2005
#cBioinformatics
#index763728
#% 
#!
  
#*Ligand-induced changes in the binding sites of proteins.
#@Xavier Fradera,Xavier de la Cruz,Carlos H. T. P. Silva,Josep Lluis Gelpí,F. Javier Luque,Modesto Orozco
#t2002
#cBioinformatics
#index763730
#% 
#!
  
#*FORESST: fold recognition from secondary structure predictions of proteins.
#@Valentina Di Francesco,Peter J. Munson,Jean Garnier
#t1999
#cBioinformatics
#index763732
#% 
#!
  
#*CAAT-Box, contigs-Assembly and Annotation Tool-Box for genome sequencing projects.
#@L. Frangeul,Philippe Glaser,C. Rusniok,C. Buchrieser,E. Duchaud,P. Dehoux,Frank Kunst
#t2004
#cBioinformatics
#index763734
#% 
#!
  
#*Data mining in bioinformatics using Weka.
#@Eibe Frank,Mark Hall,Leonard E. Trigg,Geoffrey Holmes,Ian H. Witten
#t2004
#cBioinformatics
#index763735
#% 
#!
  
#*Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes.
#@A. C. Frank,J. R. Lobry
#t2000
#cBioinformatics
#index763736
#% 
#!
  
#*Enhanced statistics for local alignment of multiple alignments improves prediction of protein function and structure.
#@Milana Frenkel-Morgenstern,Hillary Voet,Shmuel Pietrokovski
#t2005
#cBioinformatics
#index763740
#% 
#!
  
#*Using sequence compression to speedup probabilistic profile matching.
#@Valerio Freschi,Alessandro Bogliolo
#t2005
#cBioinformatics
#index763741
#% 
#!
  
#*CLANS: a Java application for visualizing protein families based on pairwise similarity.
#@Tancred Frickey,Andrei N. Lupas
#t2004
#cBioinformatics
#index763742
#% 
#!
  
#*PeCoP: automatic determination of persistently conserved positions in protein families.
#@Iddo Friedberg,Hanah Margalit
#t2002
#cBioinformatics
#index763743
#% 
#!
  
#*Support vector machines for separation of mixed plant?Cpathogen EST collections based on codon usage.
#@Caroline C. Friedel,Katharina H. V. Jahn,Selina Sommer,Stephen Rudd,Hans-Werner Mewes,Igor V. Tetko
#t2005
#cBioinformatics
#index763744
#% 
#!
  
#*Dblox: a genome-wide test for ancient segmental duplication.
#@Robert Friedman,Vikram Ekollu,John R. Rose,Austin L. Hughes
#t2004
#cBioinformatics
#index763746
#% 
#!
  
#*ProfDist: a tool for the construction of large phylogenetic trees based on profile distances.
#@Joachim Friedrich,Thomas Dandekar,Matthias Wolf,Tobias Müller
#t2005
#cBioinformatics
#index763747
#% 
#!
  
#*Functional and structural genomics using PEDANT.
#@Dmitrij Frishman,Kaj Albermann,Jean Hani,Klaus Heumann,Agnes Metanomski,Alfred Zollner,Hans-Werner Mewes
#t2001
#cBioinformatics
#index763749
#% 
#!
  
#*Comprehensive, comprehensible, distributed and intelligent databases: current status.
#@Dmitrij Frishman,Klaus Heumann,A. Lesk,Hans-Werner Mewes
#t1998
#cBioinformatics
#index763750
#% 
#!
  
#*Detection of cis -element clusters in higher eukaryotic DNA.
#@Martin C. Frith,Ulla Hansen,Zhiping Weng
#t2001
#cBioinformatics
#index763751
#% 
#!
  
#*Accelerating screening of 3D protein data with a graph theoretical approach.
#@Cornelius Frömmel,Christoph Gille,Andrean Goede,Clemens Gröpl,Stefan Hougardy,Till Nierhoff,Robert Preissner,Martin Thimm
#t2003
#cBioinformatics
#index763754
#% 
#!
  
#*On the significance of sequence alignments when using multiple scoring matrices.
#@Florian Frommlet,Andreas Futschik,Malgorzata Bogdan
#t2004
#cBioinformatics
#index763755
#% 
#!
  
#*Estimating misclassification error with small samples via bootstrap cross-validation.
#@Wenjiang J. Fu,Raymond J. Carroll,Suojin Wang
#t2005
#cBioinformatics
#index763756
#% 
#!
  
#*Bayesian models for the analysis of genetic structure when populations are correlated.
#@Rongwei Fu,Dipak K. Dey,Kent E. Holsinger
#t2005
#cBioinformatics
#index763757
#% 
#!
  
#*How many samples are needed to build a classifier: a general sequential approach.
#@Wenjiang J. Fu,Edward R. Dougherty,Bani K. Mallick,Raymond J. Carroll
#t2005
#cBioinformatics
#index763758
#% 
#!
  
#*Exploiting the kernel trick to correlate fragment ions for peptide identification via tandem mass spectrometry.
#@Yan Fu,Qiang Yang,Ruixiang Sun,Dequan Li,Rong Zeng,Charles X. Ling,Wen Gao
#t2004
#cBioinformatics
#index763759
#% 
#!
  
#*Analyse This...Or: Intelligent Help for The Rest of Us.
#@Rainer Fuchs
#t2000
#cBioinformatics
#index763760
#% 
#!
  
#*From Sequence to Biology: The Impact on Bioinformatics.
#@Rainer Fuchs
#t2002
#cBioinformatics
#index763761
#% 
#!
  
#*Minimum conflict: a divide-and-conquer approach to phylogeny estimation.
#@Georg Fuellen,Johann-Wolfgang Wägele,Robert Giegerich
#t2001
#cBioinformatics
#index763770
#% 
#!
  
#*Discovery of meaningful associations in genomic data using partial correlation coefficients.
#@Alberto de la Fuente,Nan Bing,Ina Hoeschele,Pedro Mendes
#t2004
#cBioinformatics
#index763771
#% 
#!
  
#*Genotyping of single nucleotide polymorphism using model-based clustering.
#@H. Fujisawa,S. Eguchi,M. Ushijima,S. Miyata,Y. Miki,T. Muto,M. Matsuura
#t2004
#cBioinformatics
#index763772
#% 
#!
  
#*Knowledge representation of signal transduction pathways.
#@Ken-ichiro Fukuda,Toshihisa Takagi
#t2001
#cBioinformatics
#index763773
#% 
#!
  
#*Support vector machine classification and validation of cancer tissue samples using microarray expression data.
#@Terrence S. Furey,Nello Cristianini,Nigel Duffy,David W. Bednarski,Michèl Schummer,David Haussler
#t2000
#cBioinformatics
#index763776
#% 
#!
  
#*An attempt to define allergen-specific molecular surface features: a bioinformatic approach.
#@Ruta Furmonaviciene,Brian J. Sutton,Fabian Glaser,Charlie A. Laughton,Nick Jones,Herb F. Sewell,Farouk Shakib
#t2005
#cBioinformatics
#index763777
#% 
#!
  
#*OLIN: optimized normalization, visualization and quality testing of two-channel microarray data.
#@Matthias E. Futschik,Toni Crompton
#t2005
#cBioinformatics
#index763778
#% 
#!
  
#*ProSAT: functional annotation of protein 3D structures.
#@Razif R. Gabdoulline,René Hoffmann,Florian Leitner,Rebecca C. Wade
#t2003
#cBioinformatics
#index763779
#% 
#!
  
#*Primaclade - a flexible tool to find conserved PCR primers across multiple species.
#@Michael D. Gadberry,Simon T. Malcomber,Andrew N. Doust,Elizabeth A. Kellogg
#t2005
#cBioinformatics
#index763781
#% 
#!
  
#*Hierarchical Analysis of Dependency in Metabolic Networks.
#@Julien Gagneur,David B. Jackson,Georg Casari
#t2003
#cBioinformatics
#index763782
#% 
#!
  
#*Protein Structures and Information Extraction from Biological Texts: The PASTA System.
#@Robert J. Gaizauskas,George Demetriou,Peter J. Artymiuk,Peter Willett
#t2003
#cBioinformatics
#index763783
#% 
#!
  
#*Transcriptome network component analysis with limited microarray data.
#@Simon J. Galbraith,Linh M. Tran,James C. Liao
#t2006
#cBioinformatics
#index763788
#% 
#!
  
#*Automatic registration of microarray images. I. Rectangular grid.
#@Vitaly L. Galinsky
#t2003
#cBioinformatics
#index763789
#% 
#!
  
#*Automatic registration of microarray images. II. Hexagonal grid.
#@Vitaly L. Galinsky
#t2003
#cBioinformatics
#index763790
#% 
#!
  
#*a Regulatory Element Database for .
#@Steven M. Gallo,Long Li,Zihua Hu,Marc S. Halfon
#t2006
#cBioinformatics
#index763791
#% 
#!
  
#*RAG: RNA-As-Graphs database-concepts, analysis, features.
#@Hin Hark Gan,Daniela Fera,Julie Zorn,Nahum Shiffeldrim,Michael Tang,Uri Laserson,Namhee Kim,Tamar Schlick
#t2004
#cBioinformatics
#index763794
#% 
#!
  
#*Improving molecular cancer class discovery through sparse non-negative matrix factorization.
#@Yuan Gao,George Church
#t2005
#cBioinformatics
#index763795
#% 
#!
  
#*Comparison of various algorithms for recognizing short coding sequences of human genes.
#@Feng Gao,Chun-Ting Zhang
#t2004
#cBioinformatics
#index763796
#% 
#!
  
#*DRTF: a database of rice transcription factors.
#@Ge Gao,Yingfu Zhong,Anyuan Guo,Qihui Zhu,Wen Tang,Weimou Zheng,Xiaocheng Gu,Liping Wei,Jingchu Luo
#t2006
#cBioinformatics
#index763797
#% 
#!
  
#*FCP: functional coverage of the proteome by structures.
#@Ricard García-Serna,Lulla Opatowski,Jordi Mestres
#t2006
#cBioinformatics
#index763798
#% 
#!
  
#*PROTEIOS: an open source proteomics initiative.
#@Per Gärdén,Rikard Alm,Jari Häkkinen
#t2005
#cBioinformatics
#index763799
#% 
#!
  
#*PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis.
#@Jennifer L. Gardy,Matthew R. Laird,Fei Chen,Sébastien Rey,C. J. Walsh,Martin Ester,Fiona S. L. Brinkman
#t2005
#cBioinformatics
#index763800
#% 
#!
  
#*Prediction of quaternary structure from primary structure.
#@Robert Garian
#t2001
#cBioinformatics
#index763801
#% 
#!
  
#*MAGOS: multiple alignment and modelling server.
#@Nicolas Garnier,Anne Friedrich,Raphael Bolze,Emmanuel Bettler,Luc Moulinier,Christophe Geourjon,Julie Dawn Thompson,Gilbert Deléage,Olivier Poch
#t2006
#cBioinformatics
#index763802
#% 
#!
  
#*Self-organizing and self-correcting classifications of biological data.
#@George M. Garrity,Timothy G. Lilburn
#t2005
#cBioinformatics
#index763804
#% 
#!
  
#*Pedro: a configurable data entry tool for XML.
#@Kevin L. Garwood,Chris F. Taylor,Kai J. Runte,Andy Brass,Stephen G. Oliver,Norman W. Paton
#t2004
#cBioinformatics
#index763806
#% 
#!
  
#*Retrieval and on-the-fly alignment of sequence fragments from the HIV database.
#@Brian Gaschen,Carla Kuiken,Bette Korber,Brian T. Foley
#t2001
#cBioinformatics
#index763807
#% 
#!
  
#*A simple fold with variations: the pacifastin inhibitor family.
#@Zoltán Gáspári,Csaba P. Ortutay,András Perczel
#t2004
#cBioinformatics
#index763809
#% 
#!
  
#*Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm.
#@Zoltán Gáspári,Kristian Vlahovicek,Sándor Pongor
#t2005
#cBioinformatics
#index763810
#% 
#!
  
#*Scoring clustering solutions by their biological relevance.
#@Irit Gat-Viks,Roded Sharan,Ron Shamir
#t2003
#cBioinformatics
#index763813
#% 
#!
  
#*Resolving abbreviations to their senses in Medline.
#@Sylvain Gaudan,Harald Kirsch,Dietrich Rebholz-Schuhmann
#t2005
#cBioinformatics
#index763814
#% 
#!
  
#*A model diagram layout extension for SBML.
#@Ralph Gauges,Ursula Rost,Sven Sahle,Katja Wegner
#t2006
#cBioinformatics
#index763815
#% 
#!
  
#*affy - analysis of Affymetrix GeneChip data at the probe level.
#@Laurent Gautier,Leslie Cope,Benjamin M. Bolstad,Rafael A. Irizarry
#t2004
#cBioinformatics
#index763817
#% 
#!
  
#*Pooled library tissue tags for EST-based gene discovery.
#@Allen J. Gavin,Todd E. Scheetz,Chad A. Roberts,Brian O'Leary,Terry A. Braun,Val C. Sheffield,Marcelo Bento Soares,John P. Robinson,Thomas L. Casavant
#t2002
#cBioinformatics
#index763819
#% 
#!
  
#*Global analysis of tandem aromatic octapeptide repeats: The significance of the aromatic-glycine motif.
#@Ehud Gazit
#t2002
#cBioinformatics
#index763820
#% 
#!
  
#*The HIB database of annotated UniGene clusters.
#@Birgitta Geier,Gabi Kastenmüller,Matthias Fellenberg,Hans-Werner Mewes,Burkhard Morgenstern
#t2001
#cBioinformatics
#index763823
#% 
#!
  
#*Transformation and normalization of oligonucleotide microarray data.
#@Sue C. Geller,Jeff P. Gregg,Paul Hagerman,David M. Rocke
#t2003
#cBioinformatics
#index763826
#% 
#!
  
#*'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments.
#@Jean-Christophe Gelly,Alexandre G. de Brevern,Serge A. Hazout
#t2006
#cBioinformatics
#index763827
#% 
#!
  
#*PROXIMO - a new docking algorithm to model protein complexes using data from radical probe mass spectrometry (RP-MS).
#@Sebastien K. Gerega,Kevin M. Downard
#t2006
#cBioinformatics
#index763830
#% 
#!
  
#*GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.
#@Wolfgang Gerlach,Robert Giegerich
#t2006
#cBioinformatics
#index763831
#% 
#!
  
#*Synergy of human Pol II core promoter elements revealed by statistical sequence analysis.
#@Naum I. Gershenzon,Ilya P. Ioshikhes
#t2005
#cBioinformatics
#index763832
#% 
#!
  
#*Measurement of the effectiveness of transitive sequence comparison, through a third 'intermediate' sequence.
#@Mark Gerstein
#t1998
#cBioinformatics
#index763834
#% 
#!
  
#*A Java tool for dynamic web-based 3D visualization of anatomy and overlapping gene or protein expression patterns.
#@Victor E. Gerth,Peter D. Vize
#t2005
#cBioinformatics
#index763836
#% 
#!
  
#*Inferring protein interactions from phylogenetic distance matrices.
#@Jason Gertz,Georgiy Elfond,Anna Shustrova,Matt Weisinger,Matteo Pellegrini,Shawn Cokus,Bruce Rothschild
#t2003
#cBioinformatics
#index763837
#% 
#!
  
#*sequence evolution with site-specific interactions along phylogenetic trees.
#@Tanja Gesell,Arndt von Haeseler
#t2006
#cBioinformatics
#index763838
#% 
#!
  
#*Coupled Two-way Clustering Server.
#@Gad Getz,Eytan Domany
#t2003
#cBioinformatics
#index763839
#% 
#!
  
#*Coupled Two-way Clustering Analysis of Breast Cancer and Colon Cancer Gene Expression Data.
#@Gad Getz,Hilah Gal,Itai Kela,Daniel A. Notterman,Eytan Domany
#t2003
#cBioinformatics
#index763840
#% 
#!
  
#*F2CS: FSSP to CATH and SCOP prediction server.
#@Gad Getz,Alina Starovolsky,Eytan Domany
#t2004
#cBioinformatics
#index763841
#% 
#!
  
#*Proteomic mass spectra classification using decision tree based ensemble methods.
#@Pierre Geurts,Marianne Fillet,Dominique de Seny,Marie-Alice Meuwis,Michel Malaise,Marie-Paule Merville,Louis Wehenkel
#t2005
#cBioinformatics
#index763842
#% 
#!
  
#*SSEP-Domain: protein domain prediction by alignment of secondary structure elements and profiles.
#@Jan E. Gewehr,Ralf Zimmer
#t2006
#cBioinformatics
#index763843
#% 
#!
  
#*Mixture models for assessing differential expression in complex tissues using microarray data.
#@Debashis Ghosh
#t2004
#cBioinformatics
#index763844
#% 
#!
  
#*Mixture modelling of gene expression data from microarray experiments.
#@Debashis Ghosh,Arul M. Chinnaiyan
#t2002
#cBioinformatics
#index763845
#% 
#!
  
#*Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences.
#@Mark J. Gibbs,John S. Armstrong,Adrian J. Gibbs
#t2000
#cBioinformatics
#index763846
#% 
#!
  
#*Genome Visualization Made Fast and Simple.
#@René Gibson,Douglas R. Smith
#t2003
#cBioinformatics
#index763847
#% 
#!
  
#*ODNBase-a web database for antisense oligonucleotide effectiveness studies.
#@Michael C. Giddings,Olga V. Matveeva,John F. Atkins,Raymond F. Gesteland
#t2000
#cBioinformatics
#index763848
#% 
#!
  
#*A systematic approach to dynamic programming in bioinformatics.
#@Robert Giegerich
#t2000
#cBioinformatics
#index763849
#% 
#!
  
#*SST: an algorithm for finding near-exact sequence matches in time proportional to the logarithm of the database size.
#@Eldar Giladi,Michael G. Walker,James Ze Wang,Wayne Volkmuth
#t2002
#cBioinformatics
#index763850
#% 
#!
  
#*Bio-Mirror project for public bio-data distribution.
#@Don Gilbert,Yoshihiro Ugawa,Markus Buchhorn,Tin Wee Tan,Akira Mizushima,Hyun-chul Kim,Kilnam Chon,Seyeon Weon,Juncai Ma,Yoshihiro Ichiyanagi,Der-Ming Liou,Somnuk Keretho,Suhaimi Napis
#t2004
#cBioinformatics
#index763854
#% 
#!
  
#*Motif-based searching in TOPS protein topology databases.
#@David Gilbert,David R. Westhead,N. Nagano,Janet M. Thornton
#t1999
#cBioinformatics
#index763855
#% 
#!
  
#*A statistical framework for combining and interpreting proteomic datasets.
#@Michael A. Gilchrist,Laura A. Salter,Andreas Wagner
#t2004
#cBioinformatics
#index763856
#% 
#!
  
#*Normality of oligonucleotide microarray data and implications for parametric statistical analyses.
#@Peter J. Giles,David Kipling
#t2003
#cBioinformatics
#index763857
#% 
#!
  
#*Modeling the percolation of annotation errors in a database of protein sequences.
#@Walter R. Gilks,Benjamin Audit,Daniela De Angelis,Sophia Tsoka,Christos A. Ouzounis
#t2002
#cBioinformatics
#index763858
#% 
#!
  
#*STRAP: editor for STRuctural Alignments of Proteins.
#@Christoph Gille,Cornelius Frömmel
#t2001
#cBioinformatics
#index763860
#% 
#!
  
#*KISS for STRAP: user extensions for a protein alignment editor.
#@Christoph Gille,Stephan Lorenzen,Elke Michalsky,Cornelius Frömmel
#t2003
#cBioinformatics
#index763861
#% 
#!
  
#*Tools for the SBML Community.
#@Colin S. Gillespie,Darren J. Wilkinson,Carole J. Proctor,Daryl P. Shanley,Richard J. Boys,Thomas B. L. Kirkwood
#t2006
#cBioinformatics
#index763862
#% 
#!
  
#*Taxonomic markup language: applying XML to systematic data.
#@R. Gilmour
#t2000
#cBioinformatics
#index763863
#% 
#!
  
#*3D-Jury: A Simple Approach to Improve Protein Structure Predictions.
#@Krzysztof Ginalski,Arne Elofsson,Daniel Fischer,Leszek Rychlewski
#t2003
#cBioinformatics
#index763864
#% 
#!
  
#*Modular Modeling of Cellular Systems with ProMoT/Diva.
#@Martin Ginkel,Andreas Kremling,Torsten Nutsch,R. Rehner,Ernst Dieter Gilles
#t2003
#cBioinformatics
#index763865
#% 
#!
  
#*SimShift: Identifying structural similarities from NMR chemical shifts.
#@Simon W. Ginzinger,Johannes Fischer
#t2006
#cBioinformatics
#index763866
#% 
#!
  
#*PLPMDB: Pyridoxal-5'-phosphate dependent enzymes mutants database.
#@Paolo Di Giovine
#t2004
#cBioinformatics
#index763867
#% 
#!
  
#*Biologically valid linear factor models of gene expression.
#@Mark Girolami,Rainer Breitling
#t2004
#cBioinformatics
#index763869
#% 
#!
  
#*DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions.
#@Andreas Gisel,Maria Panetta,Giorgio Grillo,Flavio Licciulli,Sabino Liuni,Cecilia Saccone,Graziano Pesole
#t2004
#cBioinformatics
#index763870
#% 
#!
  
#*Ontology for immunogenetics: the IMGT-ONTOLOGY.
#@Véronique Giudicelli,Marie-Paule Lefranc
#t1999
#cBioinformatics
#index763871
#% 
#!
  
#*CARA GENE: multipopulation integrated genetic and radiation hybrid mapping.
#@Simon de Givry,Martin Bouchez,Patrick Chabrier,Denis Milan,Thomas Schiex
#t2005
#cBioinformatics
#index763873
#% 
#!
  
#*CRAVE: a database, middleware and visualization system for phenotype ontologies.
#@Georgios V. Gkoutos,Eain C. J. Green,Simon Greenaway,Andrew Blake,Ann-Marie Mallon,John M. Hancock
#t2005
#cBioinformatics
#index763874
#% 
#!
  
#*Combinatorial image analysis of DNA microarray features.
#@Chris A. Glasbey,Peter Ghazal
#t2003
#cBioinformatics
#index763875
#% 
#!
  
#*ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information.
#@Fabian Glaser,Tal Pupko,Inbal Paz,Rachel E. Bell,Dalit Bechor-Shental,Eric Martz,Nir Ben-Tal
#t2003
#cBioinformatics
#index763876
#% 
#!
  
#*The choice of optimal distance measure in genome-wide datasets.
#@Galina V. Glazko,Alexander Gordon,Arcady R. Mushegian
#t2005
#cBioinformatics
#index763877
#% 
#!
  
#*GESTALT: a workbench for automatic integration and visualization of large-scale genomic sequence analyses.
#@Gustavo Glusman,Doron Lancet
#t2000
#cBioinformatics
#index763881
#% 
#!
  
#*Detecting periodic patterns in unevenly spaced gene expression time series using Lomb-Scargle periodograms.
#@Earl F. Glynn,Jie Chen,Arcady R. Mushegian
#t2006
#cBioinformatics
#index763882
#% 
#!
  
#*Profiles from structure based sequence alignment of porins can identify ß stranded integral membrane proteins.
#@T. V. Gnanasekaran,Suraj Peri,A. Arockiasamy,S. Krishnaswamy
#t2000
#cBioinformatics
#index763883
#% 
#!
  
#*A memory-efficient algorithm for multiple sequence alignment with constraints.
#@Chin Lung Lu,Yen Pin Huang
#t2005
#cBioinformatics
#index763885
#% 
#!
  
#*SuperDrug: a conformational drug database.
#@Andrean Goede,Mathias Dunkel,Nina Mester,Cornelius Frömmel,Robert Preissner
#t2005
#cBioinformatics
#index763886
#% 
#!
  
#*A global test for groups of genes: testing association with a clinical outcome.
#@Jelle J. Goeman,Sara A. van de Geer,Floor de Kort,Hans C. van Houwelingen
#t2004
#cBioinformatics
#index763887
#% 
#!
  
#*Testing association of a pathway with survival using gene expression data.
#@Jelle J. Goeman,Jan Oosting,Anne-Marie Cleton-Jansen,Jakob K. Anninga,Hans C. van Houwelingen
#t2005
#cBioinformatics
#index763888
#% 
#!
  
#*PathFinder: reconstruction and dynamic visualization of metabolic pathways.
#@Alexander Goesmann,Martin Haubrock,Folker Meyer,Jörn Kalinowski,Robert Giegerich
#t2002
#cBioinformatics
#index763889
#% 
#!
  
#*IPPRED: Server for Proteins Interactions Inference.
#@Nicolas Goffard,Virginie Garcia,Florian Iragne,Alexis Groppi,Antoine de Daruvar
#t2003
#cBioinformatics
#index763890
#% 
#!
  
#*Thermodynamics of enzyme-catalyzed reactions - a database for quantitative biochemistry.
#@Robert N. Goldberg,Yadu B. Tewari,Talapady N. Bhat
#t2004
#cBioinformatics
#index763892
#% 
#!
  
#*CoGenT++: an extensive and extensible data environment for computational genomics.
#@Leon Goldovsky,Paul Janssen,Dag G. Ahrén,Benjamin Audit,Ildefonso Cases,Nikos Darzentas,Anton J. Enright,Núria López-Bigas,José M. Peregrin-Alvarez,Mike Smith,Sophia Tsoka,Victor Kunin,Christos A. Ouzounis
#t2005
#cBioinformatics
#index763894
#% 
#!
  
#*VARAN: a web server for Variability Analysis of DNA microarray experiments.
#@G. Golfier,M. Tran Dang,L. Dauphinot,E. Graison,J. Rossier,M.-C. Potier
#t2004
#cBioinformatics
#index763895
#% 
#!
  
#*Do Current Sequence Analysis Algorithms Disclose Multifunctional (moonlighting) Proteins?.
#@Antonio Gómez,Núria Domedel-Puig,Juan Cedano,Jaume Piñol,Enrique Querol
#t2003
#cBioinformatics
#index763898
#% 
#!
  
#*Learning to predict protein-protein interactions from protein sequences.
#@Shawn M. Gomez,William Stafford Noble,Andrey Rzhetsky
#t2003
#cBioinformatics
#index763899
#% 
#!
  
#*JaDis: computing distances between nucleic acid sequences.
#@I. Goncalves,M. Robinson,Guy Perrière,Dominique Mouchiroud
#t1999
#cBioinformatics
#index763900
#% 
#!
  
#*PSIbase: a database of Protein Structural Interactome map (PSIMAP).
#@Sungsam Gong,Giseok Yoon,Insoo Jang,Dan M. Bolser,Panos Dafas,Michael Schroeder,Hansol Choi,Yoobok Cho,Kyungsook Han,Sunghoon Lee,Hwanho Choi,Michael Lappe,Liisa Holm,Sangsoo Kim,Donghoon Oh,Jonghwa Bhak
#t2005
#cBioinformatics
#index763901
#% 
#!
  
#*Darwin v. 2.0: an interpreted computer language for the biosciences.
#@Gaston H. Gonnet,Michael T. Hallett,Chantal Korostensky,Laurent Bernardin
#t2000
#cBioinformatics
#index763902
#% 
#!
  
#*Probabilistic alignment of motifs with sequences.
#@Pedro Gonnet,Frédérique Lisacek
#t2002
#cBioinformatics
#index763903
#% 
#!
  
#*Synonymous-non-synonymous mutation rates between sequences containing ambiguous nucleotides (Syn-SCAN).
#@Matthew J. Gonzales,Jonathan M. Dugan,Robert W. Shafer
#t2002
#cBioinformatics
#index763904
#% 
#!
  
#*Evaluating putative chimeric sequences from PCR-amplified products.
#@Juan M. Gonzalez,Johannes Zimmermann,Cesareo Saiz-Jimenez
#t2005
#cBioinformatics
#index763905
#% 
#!
  
#*Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs.
#@Didier Gonze,Sylvie Pinloche,Olivier Gascuel,Jacques van Helden
#t2005
#cBioinformatics
#index763906
#% 
#!
  
#*The LabBase system for data management in large scale biology research laboratories.
#@Nathan Goodman,Steve Rozen,Lincoln Stein,A. G. Smith
#t1998
#cBioinformatics
#index763907
#% 
#!
  
#*CHROMA: consensus-based colouring of multiple alignments for publication.
#@Leo Goodstadt,Chris P. Ponting
#t2001
#cBioinformatics
#index763908
#% 
#!
  
#*Nexplorer: phylogeny-based exploration of sequence family data.
#@Vivek Gopalan,Wei-Gang Qiu,Michael Z. Chen,Arlin Stoltzfus
#t2006
#cBioinformatics
#index763909
#% 
#!
  
#*Sequence alignment kernel for recognition of promoter regions.
#@Leo Gordon,Alexey Ya. Chervonenkis,Alex J. Gammerman,Ilham A. Shahmuradov,Victor V. Solovyev
#t2003
#cBioinformatics
#index763910
#% 
#!
  
#*PAWE-3D: visualizing power for association with error in case-control genetic studies of complex traits.
#@Derek Gordon,Chad Haynes,Jon Blumenfeld,Stephen J. Finch
#t2005
#cBioinformatics
#index763911
#% 
#!
  
#*TAMO: a flexible, object-oriented framework for analyzing transcriptional regulation using DNA-sequence motifs.
#@D. Benjamin Gordon,Lena Nekludova,Scott McCallum,Ernest Fraenkel
#t2005
#cBioinformatics
#index763912
#% 
#!
  
#*Improved prediction of bacterial transcription start sites.
#@James J. Gordon,Michael W. Towsey,James M. Hogan,Sarah A. Mathews,Peter Timms
#t2006
#cBioinformatics
#index763913
#% 
#!
  
#*PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes.
#@Swanand P. Gore,David F. Burke,Tom L. Blundell
#t2005
#cBioinformatics
#index763914
#% 
#!
  
#*MatrixPlot: visualizing sequence constraints.
#@Jan Gorodkin,Hans Henrik Stærfeldt,Ole Lund,Søren Brunak
#t1999
#cBioinformatics
#index763916
#% 
#!
  
#*Semi-automated update and cleanup of structural RNA alignment databases.
#@Jan Gorodkin,Christian Zwieb,Bjarne Knudsen
#t2001
#cBioinformatics
#index763917
#% 
#!
  
#*Mathematical simulation and analysis of cellular metabolism and regulation.
#@Igor Goryanin,T. Charles Hodgman,Evgeni Selkov
#t1999
#cBioinformatics
#index763918
#% 
#!
  
#*LIGAND: chemical database for enzyme reactions.
#@Susumu Goto,Takaaki Nishioka,Minoru Kanehisa
#t1998
#cBioinformatics
#index763919
#% 
#!
  
#*Homology-based gene structure prediction: simplified matching algorithm using a translated codon (tron) and improved accuracy by allowing for long gaps.
#@Osamu Gotoh
#t2000
#cBioinformatics
#index763920
#% 
#!
  
#*A quantitative determination of multi-protein interactions by the analysis of confocal images using a pixel-by-pixel assessment algorithm.
#@D. R. Goucher,S. M. Wincovitch,S. H. Garfield,K. M. Carbone,T. H. Malik
#t2005
#cBioinformatics
#index763925
#% 
#!
  
#*ENDscript: a workflow to display sequence and structure information.
#@Patrice Gouet,Emmanuel Courcelle
#t2002
#cBioinformatics
#index763926
#% 
#!
  
#*ESPript: analysis of multiple sequence alignments in PostScript.
#@Patrice Gouet,Emmanuel Courcelle,D. I. Stuart,F. Metoz
#t1999
#cBioinformatics
#index763927
#% 
#!
  
#*Convergent evolution of domain architectures (is rare).
#@Julian Gough
#t2005
#cBioinformatics
#index763928
#% 
#!
  
#*HIV-1 genotypic resistance: automated sequence analysis and interpretation.
#@C. P. Goujon,V. M. Schneider,C. Jacomet,J. C. Nicolas
#t1998
#cBioinformatics
#index763929
#% 
#!
  
#*Comparative gene marker selection suite.
#@Joshua Gould,Gad Getz,Stefano Monti,Michael Reich,Jill P. Mesirov
#t2006
#cBioinformatics
#index763930
#% 
#!
  
#*MPID: MHC-Peptide Interaction Database for sequence-structure-function information on peptides binding to MHC molecules.
#@Kunde Ramamoorthy Govindarajan,Pandjassarame Kangueane,Tin Wee Tan,Shoba Ranganathan
#t2003
#cBioinformatics
#index763933
#% 
#!
  
#*A multicellular systems biology model predicts epidermal morphology, kinetics and Ca flow.
#@Niels Grabe,Karsten Neuber
#t2005
#cBioinformatics
#index763934
#% 
#!
  
#*Automated protein sequence database classification. I. Integration of compositional similarity search, local similarity search, and multiple sequence alignment.
#@Jérôme Gracy,P. Argos
#t1998
#cBioinformatics
#index763936
#% 
#!
  
#*Automated protein sequence database classification. II. Delineation Of domain boundaries from sequence similarities.
#@Jérôme Gracy,P. Argos
#t1998
#cBioinformatics
#index763937
#% 
#!
  
#*Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.
#@Yonatan H. Grad,Frederick P. Roth,Marc S. Halfon,George M. Church
#t2004
#cBioinformatics
#index763938
#% 
#!
  
#*Stepwise detection of recombination breakpoints in sequence alignments.
#@Jinko Graham,Brad McNeney,Françoise Seillier-Moiseiwitsch
#t2005
#cBioinformatics
#index763939
#% 
#!
  
#*BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster.
#@Jeffrey D. Grant,Roland L. Dunbrack Jr.,Frank J. Manion,Michael F. Ochs
#t2002
#cBioinformatics
#index763941
#% 
#!
  
#*A practical false discovery rate approach to identifying patterns of differential expression in microarray data.
#@Gregory R. Grant,Junmin Liu,Christian J. Stoeckert Jr.
#t2005
#cBioinformatics
#index763942
#% 
#!
  
#*FGDP: functional genomics data pipeline for automated, multiple microarray data analyses.
#@Jeffrey D. Grant,Luke A. Somers,Yue Zhang,Frank J. Manion,Ghislain Bidaut,Michael F. Ochs
#t2004
#cBioinformatics
#index763943
#% 
#!
  
#*Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems.
#@Catherine Grasso,Christopher Lee
#t2004
#cBioinformatics
#index763945
#% 
#!
  
#*POAVIZ: A Partial Order Multiple Sequence Alignment Visualizer.
#@Catherine Grasso,Michael Quist,Kevin Ke,Christopher Lee
#t2003
#cBioinformatics
#index763946
#% 
#!
  
#*EMPReSS: European Mouse Phenotyping Resource for Standardized Screens.
#@Eain C. J. Green,Georgios V. Gkoutos,Heena V. Lad,Andrew Blake,Joseph Weekes,John M. Hancock
#t2005
#cBioinformatics
#index763948
#% 
#!
  
#*Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts.
#@Dov Greenbaum,Ronald Jansen,Mark Gerstein
#t2002
#cBioinformatics
#index763949
#% 
#!
  
#*An ontology driven architecture for derived representations of macromolecular structure.
#@Douglas S. Greer,John D. Westbrook,Philip E. Bourne
#t2002
#cBioinformatics
#index763951
#% 
#!
  
#*RALEE--RNA ALignment Editor in Emacs.
#@Sam Griffiths-Jones
#t2005
#cBioinformatics
#index763955
#% 
#!
  
#*The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs.
#@Sam Griffiths-Jones,Alex Bateman
#t2002
#cBioinformatics
#index763956
#% 
#!
  
#*A distributed environment for physical map construction.
#@Andrei Grigoriev,Alexander Levin,Hans Lehrach
#t1998
#cBioinformatics
#index763957
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#!
  
#*Global dynamics of biological systems from time-resolved omics experiments.
#@Martin G. Grigorov
#t2006
#cBioinformatics
#index763959
#% 
#!
  
#*PDQ Wizard: automated prioritization and characterization of gene and protein lists using biomedical literature.
#@G. R. Grimes,T. Q. Wen,Muriel Mewissen,Robert M. Baxter,Stuart L. Moodie,J. S. Beattie,Peter Ghazal
#t2006
#cBioinformatics
#index763962
#% 
#!
  
#*Euclidian space and grouping of biological objects.
#@Vyacheslav N. Grishin,Nick V. Grishin
#t2002
#cBioinformatics
#index763963
#% 
#!
  
#*A simple statistical method for discriminating outer membrane proteins with better accuracy.
#@M. Michael Gromiha,Makiko Suwa
#t2005
#cBioinformatics
#index763967
#% 
#!
  
#*A new approach to prediction of short-range conformational propensities in proteins.
#@Dominik Gront,Andrzej Kolinski
#t2005
#cBioinformatics
#index763968
#% 
#!
  
#*HCPM - program for hierarchical clustering of protein models.
#@Dominik Gront,Andrzej Kolinski
#t2005
#cBioinformatics
#index763969
#% 
#!
  
#*BioShell - a package of tools for structural biology computations.
#@Dominik Gront,Andrzej Kolinski
#t2006
#cBioinformatics
#index763970
#% 
#!
  
#*Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm.
#@Thomas Grotkjær,Ole Winther,Birgitte Regenberg,Jens Nielsen,Lars Kai Hansen
#t2006
#cBioinformatics
#index763973
#% 
#!
  
#*Ligand-Info, Searching for Similar Small Compounds Using Index Profiles.
#@Marcin von Grotthuss,Jakub Pas,Leszek Rychlewski
#t2003
#cBioinformatics
#index763974
#% 
#!
  
#*Alu repeat analysis in the complete human genome: trends and variations with respect to genomic composition.
#@Deepak Grover,Mitali Mukerji,Pankaj Bhatnagar,Krishnamoorthy Kannan,Samir K. Brahmachari
#t2004
#cBioinformatics
#index763975
#% 
#!
  
#*A collaborative database of inbred mouse strain characteristics.
#@Stephen C. Grubb,Gary A. Churchill,Molly A. Bogue
#t2004
#cBioinformatics
#index763976
#% 
#!
  
#*Family pairwise search with embedded motif models.
#@William Noble Grundy,Timothy L. Bailey
#t1999
#cBioinformatics
#index763977
#% 
#!
  
#*GeneContent: software for whole-genome phylogenetic analysis.
#@Xun Gu,Wei Huang,Dongping Xu,Hongmei Zhang
#t2005
#cBioinformatics
#index763981
#% 
#!
  
#*HAPLOT: a graphical comparison of haplotype blocks, tagSNP sets and SNP variation for multiple populations.
#@Sheng Gu,Andrew J. Pakstis,Kenneth K. Kidd
#t2005
#cBioinformatics
#index763982
#% 
#!
  
#*Domain identification by clustering sequence alignments.
#@X. Guan,L. Du
#t1998
#cBioinformatics
#index763983
#% 
#!
  
#*A semiparametric approach for marker gene selection based on gene expression data.
#@Zhong Guan,Hongyu Zhao
#t2005
#cBioinformatics
#index763985
#% 
#!
  
#*MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins.
#@Chittibabu Guda,Eoin Fahy,Shankar Subramaniam
#t2004
#cBioinformatics
#index763986
#% 
#!
  
#*TARGET: a new method for predicting protein subcellular localization in eukaryotes.
#@Chittibabu Guda,Shankar Subramaniam
#t2005
#cBioinformatics
#index763987
#% 
#!
  
#*Sarment: Python modules for HMM analysis and partitioning of sequences.
#@Laurent Gueguen
#t2005
#cBioinformatics
#index763988
#% 
#!
  
#*Improved performance in protein secondary structure prediction by inhomogeneous score combination.
#@Yann Guermeur,Christophe Geourjon,Patrick Gallinari,Gilbert Deléage
#t1999
#cBioinformatics
#index763991
#% 
#!
  
#*Penalized Cox regression analysis in the high-dimensional and low-sample size settings, with applications to microarray gene expression data.
#@Jiang Gui,Hongzhe Li
#t2005
#cBioinformatics
#index763992
#% 
#!
  
#*Web-based exchange of biochemical information.
#@Sinan Güler,Andreas Eberhart,Isabel Rojas
#t2003
#cBioinformatics
#index763994
#% 
#!
  
#*DATF: a database of Arabidopsis transcription factors.
#@Anyuan Guo,Kun He,Di Liu,Shunong Bai,Xiaocheng Gu,Liping Wei,Jingchu Luo
#t2005
#cBioinformatics
#index763995
#% 
#!
  
#*TSSub: eukaryotic protein subcellular localization by extracting features from profiles.
#@Jian Guo,Yuanlie Lin
#t2006
#cBioinformatics
#index763996
#% 
#!
  
#*Assessing semantic similarity measures for the characterization of human regulatory pathways.
#@Xiang Guo,Rongxiang Liu,Craig D. Shriver,Hai Hu,Michael N. Liebman
#t2006
#cBioinformatics
#index763997
#% 
#!
  
#*Statistical significance analysis of longitudinal gene expression data.
#@Xu Guo,Huilin Qi,Catherine M. Verfaillie,Wei Pan
#t2003
#cBioinformatics
#index763998
#% 
#!
  
#*Histone acetylation and transcriptional regulation in the genome of .
#@Xiang Guo,Kay Tatsuoka,Rongxiang Liu
#t2006
#cBioinformatics
#index763999
#% 
#!
  
#*Elucidation of directionality for co-expressed genes: predicting intra-operon termination sites.
#@Anshuman Gupta,Costas D. Maranas,Réka Albert
#t2006
#cBioinformatics
#index764000
#% 
#!
  
#*Genome wide identification and classification of alternative splicing based on EST data.
#@Shobhit Gupta,Dorothea Zink,Bernhard Korn,Martin Vingron,Stefan A. Haas
#t2004
#cBioinformatics
#index764001
#% 
#!
  
#*Database of Structural Motifs in Proteins.
#@Kunchur Guruprasad,Maheshuni S. Prasad,Gundu R. Kumar
#t2000
#cBioinformatics
#index764002
#% 
#!
  
#*On the complexity measures of genetic sequences.
#@Vladimir D. Gusev,Lubov A. Nemytikova,Nadia A. Chuzhanova
#t1999
#cBioinformatics
#index764003
#% 
#!
  
#*Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection.
#@Reinhard Guthke,Ulrich Möller,Martin Hoffmann,Frank Thies,Susanne Töpfer
#t2005
#cBioinformatics
#index764004
#% 
#!
  
#*DAGchainer: a tool for mining segmental genome duplications and synteny.
#@Brian J. Haas,Arthur L. Delcher,Jennifer R. Wortman,Steven Salzberg
#t2004
#cBioinformatics
#index764005
#% 
#!
  
#*Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics.
#@Daniel H. Haft,Jeremy D. Selengut,Lauren M. Brinkac,Nikhat Zafar,Owen White
#t2005
#cBioinformatics
#index764007
#% 
#!
  
#*Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions.
#@Lance W. Hahn,Marylyn D. Ritchie,Jason H. Moore
#t2003
#cBioinformatics
#index764008
#% 
#!
  
#*Semantic Mining in Biomedicine .
#@Udo Hahn,Alfonso Valencia
#t2006
#cBioinformatics
#index764009
#% 
#!
  
#*Novel technique for preprocessing high dimensional time-course data from DNA microarray: mathematical model-based clustering.
#@Kazumi Hakamada,Masahiro Okamoto,Taizo Hanai
#t2006
#cBioinformatics
#index764010
#% 
#!
  
#*Physical mapping with automatic capture of hybridization data.
#@David Hall,Suchendra M. Bhandarkar,Jonathan Arnold,Tongzhang Jiang
#t2001
#cBioinformatics
#index764011
#% 
#!
  
#*A rapid method for illustrating features in both coding and non-coding regions of a genome.
#@Ross Hall,Linda Stern
#t2004
#cBioinformatics
#index764013
#% 
#!
  
#*CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data.
#@Peter F. Hallin,David Ussery
#t2004
#cBioinformatics
#index764014
#% 
#!
  
#*Haplotype reconstruction from genotype data using Imperfect Phylogeny.
#@Eran Halperin,Eleazar Eskin
#t2004
#cBioinformatics
#index764015
#% 
#!
  
#*FramePlus: aligning DNA to protein sequences.
#@Eran Halperin,Simchon Faigler,Raveh Gill-More
#t1999
#cBioinformatics
#index764016
#% 
#!
  
#*PDB file parser and structure class implemented in Python.
#@Thomas Hamelryck,Bernard Manderick
#t2003
#cBioinformatics
#index764017
#% 
#!
  
#*An integrated system for high throughput TaqManTM based SNP genotyping.
#@Jochen Hampe,Andreas Wollstein,Timothy Lu,Hans-Jürgen Frevel,Marcus Will,Carl Manaster,Stefan Schreiber
#t2001
#cBioinformatics
#index764021
#% 
#!
  
#*POPSIM: a general population simulation program.
#@Jochen Hampe,T. Wienker,Stefan Schreiber,P. Nurnberg
#t1998
#cBioinformatics
#index764022
#% 
#!
  
#*Statistical detection of chromosomal homology using shared-gene density alone.
#@Steven E. Hampson,B. S. Gaut,Pierre Baldi
#t2005
#cBioinformatics
#index764023
#% 
#!
  
#*Distribution patterns of over-represented k-mers in non-coding yeast DNA.
#@Steven Hampson,Dennis F. Kibler,Pierre Baldi
#t2002
#cBioinformatics
#index764024
#% 
#!
  
#*A fast layout algorithm for protein interaction networks.
#@Kyungsook Han,Byong-Hyon Ju
#t2003
#cBioinformatics
#index764025
#% 
#!
  
#*Sequence analysis and membrane partitioning energies of -helical antimicrobial peptides.
#@Xing Han,Wenjun Kang
#t2004
#cBioinformatics
#index764026
#% 
#!
  
#*A vector-based method for drawing RNA secondary structure.
#@K. Han,D. Kim,H. J. Kim
#t1999
#cBioinformatics
#index764027
#% 
#!
  
#*Fold recognition by combining profile-profile alignment and support vector machine.
#@Sangjo Han,Byung-chul Lee,Seung Taek Yu,Chan-seok Jeong,Soyoung Lee,Dongsup Kim
#t2005
#cBioinformatics
#index764028
#% 
#!
  
#*Substring selection for biomedical document classification.
#@Bo Han,Zoran Obradovic,Zhang-Zhi Hu,Cathy H. Wu,Slobodan Vucetic
#t2006
#cBioinformatics
#index764029
#% 
#!
  
#*HPID: The Human Protein Interaction Database.
#@Kyungsook Han,Byungkyu Park,Hyongguen Kim,Jinsun Hong,Jong Park
#t2004
#cBioinformatics
#index764030
#% 
#!
  
#*Computational cluster validation in post-genomic data analysis.
#@Julia Handl,Joshua D. Knowles,Douglas B. Kell
#t2005
#cBioinformatics
#index764032
#% 
#!
  
#*Associative database of protein sequences.
#@Jens Hanke,Gerrit Lehmann,Peer Bork,Jens G. Reich
#t1999
#cBioinformatics
#index764033
#% 
#!
  
#*MPSS: an integrated database system for surveying a set of proteins.
#@Pei Hao,Wei-Zhong He,Yin Huang,Liang-Xiao Ma,Ying Xu,Hong Xi,Chuan Wang,Boshu Liu,Jin-Miao Wang,Yi-Xue Li,Yang Zhong
#t2005
#cBioinformatics
#index764037
#% 
#!
  
#*The generation of long telomere overhangs in human cells: a model and its implication.
#@Yu-hua Hao,Zheng Tan
#t2002
#cBioinformatics
#index764038
#% 
#!
  
#*Discovering patterns to extract protein-protein interactions from the literature: Part II.
#@Hao Yu,Xiaoyan Zhu,Minlie Huang,Ming Li
#t2005
#cBioinformatics
#index764039
#% 
#!
  
#*Positional candidate gene selection from livestock EST databases using Gene Ontology.
#@Gregory P. Harhay,John W. Keele
#t2003
#cBioinformatics
#index764040
#% 
#!
  
#*Uniform integration of genome mapping data using intersection graphs.
#@Eric Harley,Anthony J. Bonner,Nathan Goodman
#t2001
#cBioinformatics
#index764041
#% 
#!
  
#*Revealing hidden interval graph structure in STS-content data.
#@Eric Harley,Anthony J. Bonner,Nathan Goodman
#t1999
#cBioinformatics
#index764042
#% 
#!
  
#*SNP cherry picker: maximizing the chance of finding an association with a disease SNP.
#@Mark Harris,Jeremy M. R. Martin,John F. Peden,Christopher J. Rawlings
#t2003
#cBioinformatics
#index764043
#% 
#!
  
#*Condition specific transcription factor binding site characterization in Saccharomyces cerevisiae.
#@Rhonda Harrison,Charles DeLisi
#t2002
#cBioinformatics
#index764044
#% 
#!
  
#*Recognizing the fold of a protein structure.
#@Andrew P. Harrison,Frances M. G. Pearl,Ian Sillitoe,Tim Slidel,Richard Mott,Janet M. Thornton,Christine A. Orengo
#t2003
#cBioinformatics
#index764045
#% 
#!
  
#*Growing genetic regulatory networks from seed genes.
#@Ronaldo Fumio Hashimoto,Seungchan Kim,Ilya Shmulevich,Wei Zhang,Michael L. Bittner,Edward R. Dougherty
#t2004
#cBioinformatics
#index764047
#% 
#!
  
#*Stochastic reaction-diffusion simulation with MesoRD.
#@Johan Hattne,David Fange,Johan Elf
#t2005
#cBioinformatics
#index764048
#% 
#!
  
#*Regularized ROC method for disease classification and biomarker selection with microarray data.
#@Shuangge Ma,Jian Huang
#t2005
#cBioinformatics
#index764049
#% 
#!
  
#*Translation initiation start prediction in human cDNAs with high accuracy.
#@Artemis G. Hatzigeorgiou
#t2002
#cBioinformatics
#index764050
#% 
#!
  
#*DIANA-EST: a statistical analysis.
#@Artemis G. Hatzigeorgiou,Petko Fiziev,Martin Reczko
#t2001
#cBioinformatics
#index764051
#% 
#!
  
#*Exploring the diversity of complex metabolic networks.
#@Vassily Hatzimanikatis,Chunhui Li,Justin A. Ionita,Christopher S. Henry,Matthew D. Jankowski,Linda J. Broadbelt
#t2005
#cBioinformatics
#index764052
#% 
#!
  
#*LIAN 3.0: detecting linkage disequilibrium in multilocus data.
#@Bernhard Haubold,Richard R. Hudson
#t2000
#cBioinformatics
#index764053
#% 
#!
  
#*Calculating the SNP-effective sample size from an alignment.
#@Bernhard Haubold,Thomas Wiehe
#t2002
#cBioinformatics
#index764054
#% 
#!
  
#*Investigating the dynamic behavior of biochemical networks using model families.
#@Marc Daniel Haunschild,Bernd Freisleben,Ralf Takors,Wolfgang Wiechert
#t2005
#cBioinformatics
#index764057
#% 
#!
  
#*A novel strategy for microarray quality control using Bayesian networks.
#@Sampsa Hautaniemi,Henrik Edgren,Petri Vesanen,Maija Wolf,Anna-Kaarina Järvinen,Olli Yli-Harja,Jaakko Astola,Olli-P. Kallioniemi,Outi Monni
#t2003
#cBioinformatics
#index764058
#% 
#!
  
#*Modeling of signal-response cascades using decision tree analysis.
#@Sampsa Hautaniemi,Sourabh Kharait,Akihiro Iwabu,Alan Wells,Douglas A. Lauffenburger
#t2005
#cBioinformatics
#index764059
#% 
#!
  
#*Limited agreement among three global gene expression methods highlights the requirement for non-global validation.
#@Peter M. Haverty,Li-Li Hsiao,Steven R. Gullans,Ulla Hansen,Zhiping Weng
#t2004
#cBioinformatics
#index764060
#% 
#!
  
#*CisML: an XML-based format for sequence motif detection software.
#@Peter M. Haverty,Zhiping Weng
#t2004
#cBioinformatics
#index764061
#% 
#!
  
#*Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.
#@Jakob Hull Havgaard,Rune B. Lyngsø,Gary D. Stormo,Jan Gorodkin
#t2005
#cBioinformatics
#index764062
#% 
#!
  
#*Molecular evaluation using in silico protein interaction profiles.
#@Yoshiharu Hayashi,Katsuyoshi Sakaguchi,Mime Kobayashi,Masaki Kobayashi,Yo Kikuchi,Eiichiro Ichiishi
#t2003
#cBioinformatics
#index764063
#% 
#!
  
#*Evaluating and improving cDNA sequence quality with cQC.
#@Celine A. Hayden,Travis J. Wheeler,Richard A. Jorgensen
#t2005
#cBioinformatics
#index764064
#% 
#!
  
#*DEPD: a novel database for differentially expressed proteins.
#@Quan-Yuan He,Jing Cao,Xiang-Hua Liu,Miao-Xin Li,Yi-Song Liu,Jin-Yun Xie,Song-Ping Liang
#t2005
#cBioinformatics
#index764065
#% 
#!
  
#*Microarray Standard Data Set and Figures of Merit for Comparing Data Processing Methods and Experiment Designs.
#@Yudong D. He,Hongyue Dai,Eric E. Schadt,Guy Cavet,Stephen W. Edwards,Sergey B. Stepaniants,Sven Duenwald,Robert Kleinhanz,Allan R. Jones,Daniel D. Shoemaker,Roland B. Stoughton
#t2003
#cBioinformatics
#index764066
#% 
#!
  
#*SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization.
#@Min He,John K. Tomfohr,Blythe H. Devlin,Marcella Sarzotti,M. Louise Markert,Thomas B. Kepler
#t2005
#cBioinformatics
#index764067
#% 
#!
  
#*PIML: the Pathogen Information Markup Language.
#@Yongqun He,Richard R. Vines,Alice R. Wattam,Georgiy V. Abramochkin,Allan Dickerman,J. Dana Eckart,Bruno W. S. Sobral
#t2005
#cBioinformatics
#index764068
#% 
#!
  
#*Polylink: to support two-point linkage analysis in autotetraploids.
#@Yang He,Xiangming Xu,Kenneth R. Tobutt,Martin S. Ridout
#t2001
#cBioinformatics
#index764069
#% 
#!
  
#*Picasso: generating a covering set of protein family profiles.
#@Andreas Heger,Liisa Holm
#t2001
#cBioinformatics
#index764070
#% 
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#*Design and implementation of a qualitative simulation model of lambda phage infection.
#@Karsten R. Heidtke,Steffen Schulze-Kremer
#t1998
#cBioinformatics
#index764073
#% 
#!
  
#*Computational recognition of potassium channel sequences.
#@Burkhard Heil,Jost Ludwig,Hella Lichtenberg-Fraté,Thomas Lengauer
#t2006
#cBioinformatics
#index764074
#% 
#!
  
#*Metrics for comparing regulatory sequences on the basis of pattern counts.
#@Jacques van Helden
#t2004
#cBioinformatics
#index764077
#% 
#!
  
#*A Survey of the Predictive Toxicology Challenge 2000-2001.
#@Christoph Helma,Stefan Kramer
#t2003
#cBioinformatics
#index764078
#% 
#!
  
#*The Predictive Toxicology Challenge 2000-2001.
#@Christoph Helma,Ross D. King,Stefan Kramer,Ashwin Srinivasan
#t2001
#cBioinformatics
#index764079
#% 
#!
  
#*TAMAL: an integrated approach to choosing SNPs for genetic studies of human complex traits.
#@Bradley M. Hemminger,Billy Saelim,Patrick F. Sullivan
#t2006
#cBioinformatics
#index764080
#% 
#!
  
#*Beyond the central dogma.
#@Steven Henikoff
#t2002
#cBioinformatics
#index764082
#% 
#!
  
#*Blocks+: a non-redundant database of protein alignment blocks derived from multiple compilations.
#@Steven Henikoff,Jorja G. Henikoff,Shmuel Pietrokovski
#t1999
#cBioinformatics
#index764084
#% 
#!
  
#*MEPD: a resource for medaka gene expression patterns.
#@Thorsten Henrich,Mirana Ramialison,Beate Wittbrodt,Beatrice Assouline,Franck Bourrat,Anja Berger,Heinz Himmelbauer,Takashi Sasaki,Nobuyoshi Shimizu,Monte Westerfield,Hisato Kondoh,Joachim Wittbrodt
#t2005
#cBioinformatics
#index764087
#% 
#!
  
#*Equivalent binding sites reveal convergently evolved interaction motifs.
#@Andreas Henschel,Wan Kyu Kim,Michael Schroeder
#t2006
#cBioinformatics
#index764089
#% 
#!
  
#*Whole-genome prokaryotic phylogeny.
#@Stefan R. Henz,Daniel H. Huson,Alexander F. Auch,Kay Nieselt-Struwe,Stephan C. Schuster
#t2005
#cBioinformatics
#index764090
#% 
#!
  
#*Sequence optimization as an alternative to de novo analysis of tandem mass spectrometry data.
#@Alejandro Heredia-Langner,William R. Cannon,Kenneth D. Jarman,Kristin H. Jarman
#t2004
#cBioinformatics
#index764091
#% 
#!
  
#*Swissknife - 'lazy parsing' of SWISS-PROT entries.
#@Henning Hermjakob,Wolfgang Fleischmann,Rolf Apweiler
#t1999
#cBioinformatics
#index764093
#% 
#!
  
#*An EXCEL template for calculation of enzyme kinetic parameters by non-linear regression.
#@A. Hernandez,M. T. Ruiz
#t1998
#cBioinformatics
#index764095
#% 
#!
  
#*Gene expression data preprocessing.
#@Javier Herrero,Ramón Díaz-Uriarte,Joaquín Dopazo
#t2003
#cBioinformatics
#index764096
#% 
#!
  
#*A hierarchical unsupervised growing neural network for clustering gene expression patterns.
#@Javier Herrero,Alfonso Valencia,Joaquín Dopazo
#t2001
#cBioinformatics
#index764097
#% 
#!
  
#*Identifying DNA and protein patterns with statistically significant alignments of multiple sequences.
#@G. Z. Hertz,Gary D. Stormo
#t1999
#cBioinformatics
#index764100
#% 
#!
  
#*Information theoretical probe selection for hybridisation experiments.
#@Ralf Herwig,Armin O. Schmitt,Matthias Steinfath,John O'Brien,Henrik Seidel,Sebastian Meier-Ewert,Hans Lehrach,Uwe Radelof
#t2000
#cBioinformatics
#index764101
#% 
#!
  
#*10-11 bp periodicities in complete genomes reflect protein structure and DNA folding.
#@Hanspeter Herzel,Olaf Weiss,Edward N. Trifonov
#t1999
#cBioinformatics
#index764102
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#!
  
#*MAGIC Tool: integrated microarray data analysis.
#@Laurie J. Heyer,D. Z. Moskowitz,J. A. Abele,P. Karnik,D. Choi,A. Malcolm Campbell,E. E. Oldham,B. K. Akin
#t2005
#cBioinformatics
#index764104
#% 
#!
  
#*ExScript: An `EX'-Centric Approach to the Description of Transcript Diversity.
#@Win Hide
#t2001
#cBioinformatics
#index764105
#% 
#!
  
#*ConSSeq: a web-based application for analysis of amino acid conservation based on HSSP database and within context of structure.
#@Roberto H. Higa,Arnaldo J. Montagner,Roberto C. Togawa,Paula R. Kuser,Michel E. B. Yamagishi,Adauto L. Mancini,Georgios Joannis Pappas Jr.,Ronald T. Miura,Luiz G. Horita,Goran Neshich
#t2004
#cBioinformatics
#index764106
#% 
#!
  
#*Defining 3D residue environment in protein structures using SCORPION and FORMIGA.
#@Roberto H. Higa,Adilton G. Oliveira,Luiz G. Horita,Ronald T. Miura,Marcus K. Inoue,Paula R. Kuser,Adauto L. Mancini,Michel E. B. Yamagishi,Roberto C. Togawa,Goran Neshich
#t2004
#cBioinformatics
#index764107
#% 
#!
  
#*UniFrag and GenomePrimer: selection of primers for genome-wide production of unique amplicons.
#@Sacha A. F. T. van Hijum,Anne de Jong,Girbe Buist,Jan Kok,Oscar P. Kuipers
#t2003
#cBioinformatics
#index764113
#% 
#!
  
#*The UAB Proteomics Database.
#@Aubrey E. Hill,Helen Kim
#t2003
#cBioinformatics
#index764114
#% 
#!
  
#*Common structural patterns in human genes.
#@Aubrey Hill,Eric Sorscher
#t2004
#cBioinformatics
#index764115
#% 
#!
  
#*CyDAS: a cytogenetic data analysis system.
#@Bernhard Hiller,Jutta Bradtke,Harald Balz,Harald Rieder
#t2005
#cBioinformatics
#index764116
#% 
#!
  
#*CREDO: a web-based tool for computational detection of conserved sequence motifs in noncoding sequences.
#@Tobias Hindemitt,Klaus F. X. Mayer
#t2005
#cBioinformatics
#index764117
#% 
#!
  
#*The hydrophobic cores of proteins predicted by wavelet analysis.
#@Hideki Hirakawa,S. Muta,Satoru Kuhara
#t1999
#cBioinformatics
#index764118
#% 
#!
  
#*SOSUI: classification and secondary structure prediction system for membrane proteins.
#@Takatsugu Hirokawa,S. Boon-Chieng,Shigeki Mitaku
#t1998
#cBioinformatics
#index764119
#% 
#!
  
#*Accomplishments and challenges in literature data mining for biology.
#@Lynette Hirschman,Jong C. Park,Jun-ichi Tsujii,Limsoon Wong,Cathy H. Wu
#t2002
#cBioinformatics
#index764122
#% 
#!
  
#*Viral Genome DataBase: storing and analyzing genes and proteins from complete viral genomes.
#@David Hiscock,Chris Upton
#t2000
#cBioinformatics
#index764123
#% 
#!
  
#*CRH_Server: an online comparative and radiation hybrid mapping server for the canine genome.
#@Christophe Hitte,Thomas Derrien,Catherine André,Elaine A. Ostrander,Francis Galibert
#t2004
#cBioinformatics
#index764124
#% 
#!
  
#*SeqVis: Visualization of compositional heterogeneity in large alignments of nucleotides.
#@Joshua Wing Kei Ho,Cameron E. Adams,Jie Bin Lew,Timothy J. Matthews,Chiu Chin Ng,Arash Shahabi-Sirjani,Leng Hong Tan,Yu Zhao,Simon Easteal,Susan R. Wilson,Lars S. Jermiin
#t2006
#cBioinformatics
#index764125
#% 
#!
  
#*A new summarization method for affymetrix probe level data.
#@Sepp Hochreiter,Djork-Arné Clevert,Klaus Obermayer
#t2006
#cBioinformatics
#index764127
#% 
#!
  
#*A historical perspective on gene/protein functional assignment.
#@T. Charles Hodgman
#t2000
#cBioinformatics
#index764128
#% 
#!
  
#*SPiD: a subtilis protein interaction database.
#@Mark Hoebeke,Hélène Chiapello,Philippe Noirot,Philippe Bessières
#t2001
#cBioinformatics
#index764131
#% 
#!
  
#*MuGeN: Simultaneous Exploration of Multiple Genomes and Computer Analysis Results.
#@Mark Hoebeke,Pierre Nicolas,Philippe Bessières
#t2003
#cBioinformatics
#index764132
#% 
#!
  
#*Alignment of RNA base pairing probability matrices.
#@Ivo L. Hofacker,Stephan H. F. Bernhart,Peter F. Stadler
#t2004
#cBioinformatics
#index764134
#% 
#!
  
#*Prediction of locally stable RNA secondary structures for genome-wide surveys.
#@Ivo L. Hofacker,Barbara Priwitzer,Peter F. Stadler
#t2004
#cBioinformatics
#index764135
#% 
#!
  
#*Memory efficient folding algorithms for circular RNA secondary structures.
#@Ivo L. Hofacker,Peter F. Stadler
#t2006
#cBioinformatics
#index764136
#% 
#!
  
#*Conserved RNA secondary structures in viral genomes: a survey.
#@Ivo L. Hofacker,Peter F. Stadler,Roman R. Stocsits
#t2004
#cBioinformatics
#index764137
#% 
#!
  
#*easyLINKAGE-Plus--automated linkage analyses using large-scale SNP data.
#@Katrin Hoffmann,Tom H. Lindner
#t2005
#cBioinformatics
#index764139
#% 
#!
  
#*Concept-based annotation of enzyme classes.
#@Oliver Hofmann,Dietmar Schomburg
#t2005
#cBioinformatics
#index764140
#% 
#!
  
#*PCSB-a program collection for structural biology and biophysical chemistry.
#@A. Hofmann,A. Wlodawer
#t2002
#cBioinformatics
#index764142
#% 
#!
  
#*MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition.
#@Annette Höglund,Pierre Dönnes,Torsten Blum,Hans-Werner Adolph,Oliver Kohlbacher
#t2006
#cBioinformatics
#index764146
#% 
#!
  
#*Wrapping up BLAST and other applications for use on Unix clusters.
#@Karsten Hokamp,Denis C. Shields,Kenneth H. Wolfe,Daniel R. Caffrey
#t2003
#cBioinformatics
#index764147
#% 
#!
  
#*VitaPad: visualization tools for the analysis of pathway data.
#@Matthew Holford,Naixin Li,Prakash M. Nadkarni,Hongyu Zhao
#t2005
#cBioinformatics
#index764148
#% 
#!
  
#*OrthoGUI: graphical presentation of Orthostrapper results.
#@Volker Hollich,Christian E. V. Storm,Erik L. L. Sonnhammer
#t2002
#cBioinformatics
#index764149
#% 
#!
  
#*MACiE: a database of enzyme reaction mechanisms.
#@Gemma L. Holliday,Gail J. Bartlett,Daniel E. Almonacid,Noel M. O'Boyle,Peter Murray-Rust,Janet M. Thornton,John B. O. Mitchell
#t2005
#cBioinformatics
#index764150
#% 
#!
  
#*DaliLite workbench for protein structure comparison.
#@Liisa Holm,Jong Park
#t2000
#cBioinformatics
#index764151
#% 
#!
  
#*Removing near-neighbour redundancy from large protein sequence collections.
#@Liisa Holm,Chris Sander
#t1998
#cBioinformatics
#index764152
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#*Subnetwork hierarchies of biochemical pathways.
#@Petter Holme,Mikael Huss,Hawoong Jeong
#t2003
#cBioinformatics
#index764153
#% 
#!
  
#*Using evolutionary Expectation Maximization to estimate indel rates.
#@Ian Holmes
#t2005
#cBioinformatics
#index764154
#% 
#!
  
#*Evolutionary HMMs: a Bayesian approach to multiple alignment.
#@Ian Holmes,William J. Bruno
#t2001
#cBioinformatics
#index764155
#% 
#!
  
#*Gene clustering by Latent Semantic Indexing of MEDLINE abstracts.
#@Ramin Homayouni,Kevin Heinrich,Lai Wei,Michael W. Berry
#t2005
#cBioinformatics
#index764158
#% 
#!
  
#*A deterministic motif finding algorithm with application to the human genome.
#@Lawrence S. Hon,Ajay N. Jain
#t2006
#cBioinformatics
#index764159
#% 
#!
  
#*A boosting approach for motif modeling using ChIP-chip data.
#@Pengyu Hong,X. Shirley Liu,Qing Zhou,Xin Lu,Jun S. Liu,Wing Hung Wong
#t2005
#cBioinformatics
#index764160
#% 
#!
  
#*HCNet: a database of heart and calcium functional network.
#@Seong-Eui Hong,Seong-Hwan Rho,Young Il Yeom,Do Han Kim
#t2006
#cBioinformatics
#index764161
#% 
#!
  
#*Statistical analysis of a small set of time-ordered gene expression data using linear splines.
#@Michiel J. L. de Hoon,Seiya Imoto,Satoru Miyano
#t2002
#cBioinformatics
#index764165
#% 
#!
  
#*Medusa: a simple tool for interaction graph analysis.
#@Sean D. Hooper,Peer Bork
#t2005
#cBioinformatics
#index764166
#% 
#!
  
#*Prediction of genetic structure in eukaryotic DNA using reference point logistic regression and sequence alignment.
#@Peter M. Hooper,Haiyan Zhang,David S. Wishart
#t2000
#cBioinformatics
#index764167
#% 
#!
  
#*Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood.
#@Wim Hordijk,Olivier Gascuel
#t2005
#cBioinformatics
#index764168
#% 
#!
  
#*Comprehensive comparison between locations of orthologous genes on archaeal and bacterial genomes.
#@Katsuhisa Horimoto,Satoshi Fukuchi,Kentaro Mori
#t2001
#cBioinformatics
#index764169
#% 
#!
  
#*A method for comparing circular genomes from gene locations: application to mitochondrial genomes.
#@Katsuhisa Horimoto,M. Suyama,Hiroyuki Toh,Kentaro Mori,Jinya Otsuka
#t1998
#cBioinformatics
#index764170
#% 
#!
  
#*Statistical estimation of cluster boundaries in gene expression profile data.
#@Katsuhisa Horimoto,Hiroyuki Toh
#t2001
#cBioinformatics
#index764171
#% 
#!
  
#*Novel Clustering Algorithm for Microarray Expression Data in A Truncated SVD Space.
#@David Horn,Inon Axel
#t2003
#cBioinformatics
#index764172
#% 
#!
  
#*Automated extraction of mutation data from the literature: application of MuteXt to G protein-coupled receptors and nuclear hormone receptors.
#@Florence Horn,Anthony L. Lau,Fred E. Cohen
#t2004
#cBioinformatics
#index764173
#% 
#!
  
#*Constructing an enzyme-centric view of metabolism.
#@Andrew B. Horne,T. Charles Hodgman,Hugh D. Spence,Andrew R. Dalby
#t2004
#cBioinformatics
#index764174
#% 
#!
  
#*The estimation of relative site variability among aligned homologous protein sequences.
#@David Stephen Horner,Graziano Pesole
#t2003
#cBioinformatics
#index764175
#% 
#!
  
#*SEPON, a Selection and Evaluation Pipeline for OligoNucleotides based on ESTs with a non-target algorithm for reducing cross-hybridization in microarray gene expression experiments.
#@Henrik Hornshøj,Henrik Stengaard,Frank Panitz,Christian Bendixen
#t2004
#cBioinformatics
#index764176
#% 
#!
  
#*Efficient remote homology detection using local structure.
#@Yuna Hou,Wynne Hsu,Mong-Li Lee,Chris Bystroff
#t2003
#cBioinformatics
#index764178
#% 
#!
  
#*BioSilico: an integrated metabolic database system.
#@Bo Kyeng Hou,Jin Sik Kim,Ji Hoon Jun,Dong-Yup Lee,Yong Wook Kim,Sujin Chae,Mira Roh,Yong-Ho In,Sang Yup Lee
#t2004
#cBioinformatics
#index764179
#% 
#!
  
#*Optimizing substitution matrices by separating score distributions.
#@Yuichiro Hourai,Tatsuya Akutsu,Yutaka Akiyama
#t2004
#cBioinformatics
#index764180
#% 
#!
  
#*QuickTree: building huge Neighbour-Joining trees of protein sequences.
#@Kevin L. Howe,Alex Bateman,Richard Durbin
#t2002
#cBioinformatics
#index764183
#% 
#!
  
#*Making sense of microarray data distributions.
#@David C. Hoyle,Magnus Rattray,Ray Jupp,Andy Brass
#t2002
#cBioinformatics
#index764184
#% 
#!
  
#*IslandPath: aiding detection of genomic islands in prokaryotes.
#@William Hsiao,Ivan Wan,Steven J. Jones,Fiona S. L. Brinkman
#t2003
#cBioinformatics
#index764185
#% 
#!
  
#*Variance-modeled posterior inference of microarray data: detecting gene-expression changes in 3T3-L1 adipocytes.
#@Albert Hsiao,D. S. Worrall,Jerrold M. Olefsky,Shankar Subramaniam
#t2004
#cBioinformatics
#index764186
#% 
#!
  
#*An efficient algorithm for minimal primer set selection.
#@Ming-Hua Hsieh,Wei-Che Hsu,Sung-Kay Chiu,Chi-Meng Tzeng
#t2003
#cBioinformatics
#index764187
#% 
#!
  
#*The UCSC Known Genes.
#@Fan Hsu,W. James Kent,Hiram Clawson,Robert M. Kuhn,Mark Diekhans,David Haussler
#t2006
#cBioinformatics
#index764188
#% 
#!
  
#*Constructing quantitative models from qualitative mutant phenotypes: preferences in selecting sensory organ precursors.
#@Chao-Ping Hsu,Pei-Hsuan Lee,Ching-Wei Chang,Cheng-Tsung Lee
#t2006
#cBioinformatics
#index764189
#% 
#!
  
#*An unsupervised hierarchical dynamic self-organizing approach to cancer class discovery and marker gene identification in microarray data.
#@Arthur L. Hsu,Sen-Lin Tang,Saman K. Halgamuge
#t2003
#cBioinformatics
#index764190
#% 
#!
  
#*Analysis of dose-response effects on gene expression data with comparison of two microarray platforms.
#@Jianhua Hu,Mini Kapoor,Wei Zhang,Stanley R. Hamilton,Kevin R. Coombes
#t2005
#cBioinformatics
#index764191
#% 
#!
  
#*Developing optimal non-linear scoring function for protein design.
#@Changyu Hu II,Xiang Li,Jie Liang
#t2004
#cBioinformatics
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#*Design and implementation of a CORBA-based genome mapping system prototype.
#@Jian Hu,Chris Mungall,David Nicholson,Alan L. Archibald
#t1998
#cBioinformatics
#index764193
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#!
  
#*Literature mining and database annotation of protein phosphorylation using a rule-based system.
#@Zhang-Zhi Hu,Meenakshi Narayanaswamy,K. E. Ravikumar,K. Vijay-Shanker,Cathy H. Wu
#t2005
#cBioinformatics
#index764194
#% 
#!
  
#*Combinatorial motif analysis and hypothesis generation on a genomic scale.
#@Yuh-Jyh Hu,Suzanne B. Sandmeyer,Calvin McLaughlin,Dennis F. Kibler
#t2000
#cBioinformatics
#index764196
#% 
#!
  
#*Practical FDR-based sample size calculations in microarray experiments.
#@Jianhua Hu,Fei Zou,Fred A. Wright
#t2005
#cBioinformatics
#index764197
#% 
#!
  
#*Support vector machine approach for protein subcellular localization prediction.
#@Sujun Hua,Zhirong Sun
#t2001
#cBioinformatics
#index764198
#% 
#!
  
#*Optimal number of features as a function of sample size for various classification rules.
#@Jianping Hua,Zixiang Xiong,James Lowey,Edward Suh,Edward R. Dougherty
#t2005
#cBioinformatics
#index764199
#% 
#!
  
#*A Comparison of Physical Mapping Algorithms Based on the Maximum Likelihood Model.
#@Jinling Huang,Suchendra M. Bhandarkar
#t2003
#cBioinformatics
#index764202
#% 
#!
  
#*Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.
#@Yao-ming Huang,Christopher Bystroff
#t2006
#cBioinformatics
#index764203
#% 
#!
  
#*A generalized global alignment algorithm.
#@Xiaoqiu Huang,Kun-Mao Chao
#t2003
#cBioinformatics
#index764204
#% 
#!
  
#*Integrated minimum-set primers and unique probe design algorithms for differential detection on symptom-related pathogens.
#@Yu-Cheng Huang,Chun-Fan Chang,Chen-hsiung Chan,Tze-Jung Yeh,Ya-Chun Chang,Chaur-Chin Chen,Cheng-Yan Kao
#t2005
#cBioinformatics
#index764205
#% 
#!
  
#*Prediction of protein subcellular locations using fuzzy -NN method.
#@Ying Huang,Yanda Li
#t2004
#cBioinformatics
#index764208
#% 
#!
  
#*A heuristic approach for detecting RNA H-type pseudoknots.
#@Chun-Hsiang Huang,Chin Lung Lu,Hsien-Tai Chiu
#t2005
#cBioinformatics
#index764209
#% 
#!
  
#*JXP4BIGI: a generalized, Java XML-based approach for biological information gathering and integration.
#@Yihua Huang,Tianyun Ni,Lei Zhou,Stanley Y. W. Su
#t2003
#cBioinformatics
#index764211
#% 
#!
  
#*Linear regression and two-class classification with gene expression data.
#@Xiaohong Huang,Wei Pan
#t2003
#cBioinformatics
#index764212
#% 
#!
  
#*Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data.
#@Desheng Huang,Wei Pan
#t2006
#cBioinformatics
#index764213
#% 
#!
  
#*ESTminer: a Web interface for mining EST contig and cluster databases.
#@Yecheng Huang,Janie Pumphrey,Alan R. Gingle
#t2005
#cBioinformatics
#index764214
#% 
#!
  
#*Modeling the relationship between LVAD support time and gene expression changes in the human heart by penalized partial least squares.
#@Xiaohong Huang,Wei Pan,Soon J. Park,Xinqiang Han,Leslie W. Miller,Jennifer Hall
#t2004
#cBioinformatics
#index764215
#% 
#!
  
#*POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome.
#@Tao-Wei Huang,An-Chi Tien,Wen-Shien Huang,Yuan-Chii G. Lee,Chin-Lin Peng,Huei-Hun Tseng,Cheng-Yan Kao,Chi-Ying F. Huang
#t2004
#cBioinformatics
#index764216
#% 
#!
  
#*Accurate anchoring alignment of divergent sequences.
#@Weichun Huang,David M. Umbach,Leping Li
#t2006
#cBioinformatics
#index764217
#% 
#!
  
#*PGTdb: a database providing growth temperatures of prokaryotes.
#@Shir-Ly Huang,Li-Cheng Wu,Han-Kuen Liang,Kuan-Ting Pan,Jorng-Tzong Horng,Ming-Tat Ko
#t2004
#cBioinformatics
#index764219
#% 
#!
  
#*Detection of DNA copy number alterations using penalized least squares regression.
#@Tao Huang,Baolin Wu,Paul Lizardi,Hongyu Zhao
#t2005
#cBioinformatics
#index764220
#% 
#!
  
#*Efficient combination of multiple word models for improved sequence comparison.
#@Xiaoqiu Huang,Liang Ye,Hui-Hsien Chou,I-Hsuan Yang,Kun-Mao Chao
#t2004
#cBioinformatics
#index764221
#% 
#!
  
#*Rapid and sensitive dot-matrix methods for genome analysis.
#@Yue Huang,Ling Zhang
#t2004
#cBioinformatics
#index764222
#% 
#!
  
#*Independent component analysis-based penalized discriminant method for tumor classification using gene expression data.
#@De-Shuang Huang,Chun-Hou Zheng
#t2006
#cBioinformatics
#index764223
#% 
#!
  
#*Discovering patterns to extract protein-protein interactions from full texts.
#@Minlie Huang,Xiaoyan Zhu,Hao Yu,Donald G. Payan,Kunbin Qu,Ming Li
#t2004
#cBioinformatics
#index764225
#% 
#!
  
#*Robust estimators for expression analysis.
#@Earl Hubbell,Wei-Min Liu,Rui Mei
#t2002
#cBioinformatics
#index764226
#% 
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#*Bellerophon: a program to detect chimeric sequences in multiple sequence alignments.
#@Thomas Huber,Geoffrey Faulkner,Philip Hugenholtz
#t2004
#cBioinformatics
#index764227
#% 
#!
  
#*matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements.
#@Wolfgang Huber,Robert Gentleman
#t2004
#cBioinformatics
#index764228
#% 
#!
  
#*Comment on 'Protein isoelectric point as a predictor for increased crystallization screening efficiency'.
#@Thomas Huber,Bostjan Kobe
#t2004
#cBioinformatics
#index764229
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#*Sausage: protein threading with flexible force fields.
#@Thomas Huber,Anthony J. Russell,Daniel Ayers,Andrew E. Torda
#t1999
#cBioinformatics
#index764230
#% 
#!
  
#*Transcript mapping with high-density oligonucleotide tiling arrays.
#@Wolfgang Huber,Joern Toedling,Lars M. Steinmetz
#t2006
#cBioinformatics
#index764231
#% 
#!
  
#*Robust PCA and classification in biosciences.
#@Mia Hubert,Sanne Engelen
#t2004
#cBioinformatics
#index764232
#% 
#!
  
#*Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation.
#@Lars Juhl Jensen,Steen Knudsen
#t2000
#cBioinformatics
#index764233
#% 
#!
  
#*Integrated databases and computer systems for studying eukaryotic gene expression.
#@Nikolay A. Kolchanov,Mikhail P. Ponomarenko,Anatoly S. Frolov,Elena A. Ananko,F. A. Kolpakov,Elena V. Ignatieva,Olga A. Podkolodnaya,T. N. Goryachkovskaya,Irina L. Stepanenko,Tatyana I. Merkulova,V. V. Babenko,Y. V. Ponomarenko,Alexey V. Kochetov,Nikolay L. Podkolodny,Denis G. Vorobiev,Sergey V. Lavryushev,Dmitry A. Grigorovich,Y. V. Kondrakhin,Luciano Milanesi,Edgar Wingender,Victor V. Solovyev,G. Christian Overton
#t1999
#cBioinformatics
#index764234
#% 
#!
  
#*The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
#@Michael Hucka,Andrew Finney,Herbert M. Sauro,H. Bolouri,John C. Doyle,Hiroaki Kitano,Adam P. Arkin,Benjamin J. Bornstein,D. Bray,A. Cornish-Bowden,Autumn A. Cuellar,Serge Dronov,Ernst Dieter Gilles,Martin Ginkel,Victoria Gor,Igor Goryanin,W. J. Hedley,T. Charles Hodgman,J. H. Hofmeyr,Peter J. Hunter,Nick S. Juty,J. L. Kasberger,Andreas Kremling,Ursula Kummer,Nicolas Le Novère,Leslie M. Loew,D. Lucio,Pedro Mendes,E. Minch,Eric Mjolsness,Yoichi Nakayama,M. R. Nelson,Poul M. F. Nielsen,T. Sakurada,James C. Schaff,Bruce E. Shapiro,Thomas Simon Shimizu,Hugh D. Spence,Jörg Stelling,Koichi Takahashi,Masaru Tomita,J. Wagner,J. Wang
#t2003
#cBioinformatics
#index764235
#% 
#!
  
#*Genescript: DNA Sequence Annotation Pipeline.
#@Alexander K. Hudek,Joseph Cheung,Andrew P. Boright,Stephen W. Scherer
#t2003
#cBioinformatics
#index764236
#% 
#!
  
#*Generating samples under a Wright-Fisher neutral model of genetic variation.
#@Richard R. Hudson
#t2002
#cBioinformatics
#index764237
#% 
#!
  
#*MRBAYES: Bayesian inference of phylogenetic trees.
#@John P. Huelsenbeck,Fredrik Ronquist
#t2001
#cBioinformatics
#index764238
#% 
#!
  
#*Strategies for the development of a peptide computer.
#@Hubert Hug,Rainer Schuler
#t2001
#cBioinformatics
#index764239
#% 
#!
  
#*Within-host evolution of CD8-TL epitopes encoded by overlapping and non-overlapping reading frames of simian immunodeficiency virus.
#@Austin L. Hughes,Helen Piontkivska,Kendall C. Krebs,David H. O'Connor,David I. Watkins
#t2005
#cBioinformatics
#index764240
#% 
#!
  
#*SEAN: SNP prediction and display program utilizing EST sequence clusters.
#@Derek Huntley,Angela Baldo,Saurabh Johri,Marek J. Sergot
#t2006
#cBioinformatics
#index764246
#% 
#!
  
#*Analysis of array CGH data: from signal ratio to gain and loss of DNA regions.
#@Philippe Hupé,Nicolas Stransky,Jean-Paul Thiery,François Radvanyi,Emmanuel Barillot
#t2004
#cBioinformatics
#index764247
#% 
#!
  
#*Combining DNA expression with positional information to detect functional silencing of chromosomal regions.
#@Johannes Hüsing,Michael Zeschnigk,Tanja Boes,Karl-Heinz Jöckel
#t2003
#cBioinformatics
#index764248
#% 
#!
  
#*Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks.
#@Dirk Husmeier
#t2003
#cBioinformatics
#index764249
#% 
#!
  
#*A Bayesian approach to discriminate between alternative DNA sequence segmentations.
#@Dirk Husmeier,Frank Wright
#t2002
#cBioinformatics
#index764250
#% 
#!
  
#*Detecting interspecific recombination with a pruned probabilistic divergence measure.
#@Dirk Husmeier,Frank Wright,Iain Milne
#t2005
#cBioinformatics
#index764251
#% 
#!
  
#*SplitsTree: analyzing and visualizing evolutionary data.
#@Daniel H. Huson
#t1998
#cBioinformatics
#index764252
#% 
#!
  
#*Phylogenetic trees based on gene content.
#@Daniel H. Huson,Mike A. Steel
#t2004
#cBioinformatics
#index764253
#% 
#!
  
#*A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins.
#@Torgeir R. Hvidsten,Andriy Kryshtafovych,Henryk Jan Komorowski,Krzysztof Fidelis
#t2004
#cBioinformatics
#index764255
#% 
#!
  
#*Learning Rule-based Models of Biological Process from Gene Expression Time Profiles Using Gene Ontology.
#@Torgeir R. Hvidsten,Astrid Lægreid,Henryk Jan Komorowski
#t2003
#cBioinformatics
#index764256
#% 
#!
  
#*Inverse modeling using multi-block PLS to determine the environmental conditions that provide optimal cellular function.
#@Daehee Hwang,George Stephanopoulos,Christina Chan
#t2004
#cBioinformatics
#index764257
#% 
#!
  
#*Determination of minimum sample size and discriminatory expression patterns in microarray data.
#@Daehee Hwang,William A. Schmitt,George Stephanopoulos,Gregory Stephanopoulos
#t2002
#cBioinformatics
#index764258
#% 
#!
  
#*GeneHuggers: database mining and application connectivity tools for subsequence analyses of the human genome.
#@Jason S. Iacovoni
#t2003
#cBioinformatics
#index764259
#% 
#!
  
#*STRIRED: graphical analysis of string repeats.
#@Giovanni Iazzetti,M. L. Chiusano,Raffaele Calogero
#t1998
#cBioinformatics
#index764260
#% 
#!
  
#*VIRTLAB: a virtual molecular biology laboratory.
#@Giovanni Iazzetti,G. Santini,M. Rau,E. Bucci,Raffaele Calogero
#t1998
#cBioinformatics
#index764261
#% 
#!
  
#*A-Cell: graphical user interface for the construction of biochemical reaction models.
#@Kazuhisa Ichikawa
#t2001
#cBioinformatics
#index764262
#% 
#!
  
#*A support vector machine-based method for predicting the propensity of a protein to be soluble or to form inclusion body on overexpression in .
#@Susan Idicula-Thomas,Abhijit J. Kulkarni,Bhaskar D. Kulkarni,Valadi K. Jayaraman,Petety V. Balaji
#t2006
#cBioinformatics
#index764263
#% 
#!
  
#*Defining transcription modules using large-scale gene expression data.
#@Jan Ihmels,Sven Bergmann,Naama Barkai
#t2004
#cBioinformatics
#index764264
#% 
#!
  
#*ModView, visualization of multiple protein sequences and structures.
#@Valentin A. Ilyin,Ursula Pieper,Ashley C. Stuart,Marc A. Martí-Renom,Linda McMahan,Andrej Sali
#t2003
#cBioinformatics
#index764266
#% 
#!
  
#*A generic motif discovery algorithm for sequential data.
#@Kyle L. Jensen,Mark P. Styczynski,Isidore Rigoutsos,Gregory Stephanopoulos
#t2006
#cBioinformatics
#index764267
#% 
#!
  
#*Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms.
#@Hongwu Ma,An-Ping Zeng
#t2003
#cBioinformatics
#index764268
#% 
#!
  
#*Investigating metabolite essentiality through genome-scale analysis of Escherichia coli production capabilities.
#@Marcin Imielinski,Calin Belta,Ádám M. Halász,Harvey Rubin
#t2005
#cBioinformatics
#index764269
#% 
#!
  
#*A multivariate approach applied to microarray data for identification of genes with cell cycle-coupled transcription.
#@Daniel Johansson,Petter Lindgren,Anders Berglund
#t2003
#cBioinformatics
#index764270
#% 
#!
  
#*Critical Assessment of Microarray Data Analysis: the 2001 challenge.
#@Kimberly F. Johnson,Simon M. Lin
#t2001
#cBioinformatics
#index764272
#% 
#!
  
#*Mapper: an intelligent restriction mapping tool.
#@J. A. Inglehart,P. C. Nelson,Y. Zou
#t1998
#cBioinformatics
#index764273
#% 
#!
  
#*Protein family annotation in a multiple alignment viewer.
#@Jason M. Johnson,Keith Mason,Ciamac Cyrus Moallemi,Hualin Xi,Shyamal Somaroo,Enoch S. Huang
#t2003
#cBioinformatics
#index764274
#% 
#!
  
#*LabArray: real-time imaging and analytical tool for microarrays.
#@Johnson Kian-Kok Ng,Wen-Tso Liu
#t2005
#cBioinformatics
#index764277
#% 
#!
  
#*Probabilistic inference of molecular networks from noisy data sources.
#@Ivan Iossifov,Michael Krauthammer,Carol Friedman,Vasileios Hatzivassiloglou,Joel S. Bader,Kevin P. White,Andrey Rzhetsky
#t2004
#cBioinformatics
#index764278
#% 
#!
  
#*TableView: Portable Genomic Data Visualization.
#@James E. Johnson,Martina V. Stromvik,Kevin A. T. Silverstein,John A. Crow,Elizabeth Shoop,Ernest F. Retzel
#t2003
#cBioinformatics
#index764279
#% 
#!
  
#*AliasServer: a web server to handle multiple aliases used to refer to proteins.
#@Florian Iragne,Aurélien Barré,Nicolas Goffard,Antoine de Daruvar
#t2004
#cBioinformatics
#index764280
#% 
#!
  
#*Matching amino acid and nucleotide sequences of mouse rheumatoid factor CDRH3-FRH4 segments to other mouse antibodies with known specificities.
#@George Johnson,Tai Te Wu
#t2000
#cBioinformatics
#index764281
#% 
#!
  
#*ProViz: protein interaction visualization and exploration.
#@Florian Iragne,Macha Nikolski,Bertrand Mathieu,David Auber,David James Sherman
#t2005
#cBioinformatics
#index764282
#% 
#!
  
#*Sequence type analysis and recombinational tests (START).
#@Keith A. Jolley,E. J. Feil,Man-Suen Chan,Martin C. J. Maiden
#t2001
#cBioinformatics
#index764283
#% 
#!
  
#*Comparison of Affymetrix GeneChip expression measures.
#@Rafael A. Irizarry,Zhijin Wu,Harris A. Jaffee
#t2006
#cBioinformatics
#index764284
#% 
#!
  
#*A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments.
#@Wei Pan
#t2002
#cBioinformatics
#index764286
#% 
#!
  
#*Locating probable genes using Fourier transform approach.
#@Biju Issac,Harpreet Singh,Harpreet Kaur,G. P. S. Raghava
#t2002
#cBioinformatics
#index764289
#% 
#!
  
#*Structure motif discovery and mining the PDB.
#@Inge Jonassen,Ingvar Eidhammer,Darrell Conklin,William R. Taylor
#t2002
#cBioinformatics
#index764290
#% 
#!
  
#*Fast and accurate database homology search using upper bounds of local alignment scores.
#@Masumi Itoh,Susumu Goto,Tatsuya Akutsu,Minoru Kanehisa
#t2005
#cBioinformatics
#index764293
#% 
#!
  
#*Data mining of sequences and 3D structures of allergenic proteins.
#@Ovidiu Ivanciuc,Catherine H. Schein,Werner Braun
#t2002
#cBioinformatics
#index764295
#% 
#!
  
#*An object model and database for functional genomics.
#@Andrew Jones,Ela Hunt,Jonathan M. Wastling,Angel Pizarro,Christian J. Stoeckert Jr.
#t2004
#cBioinformatics
#index764296
#% 
#!
  
#*The ASCH superfamily: novel domains with a fold related to the PUA domain and a potential role in RNA metabolism.
#@Lakshminarayan M. Iyer,A. Maxwell Burroughs,L. Aravind
#t2006
#cBioinformatics
#index764299
#% 
#!
  
#*jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences.
#@Yoon-Seong Jeon,Hwanwon Chung,Sunyoung Park,Inae Hur,Jae-Hak Lee,Jongsik Chun
#t2005
#cBioinformatics
#index764300
#% 
#!
  
#*On the Use of Permutation in and the Performance of A Class of Nonparametric Methods to Detect Differential Gene Expression.
#@Wei Pan
#t2003
#cBioinformatics
#index764301
#% 
#!
  
#*COMPUCELL, a multi-model framework for simulation of morphogenesis.
#@Jesús A. Izaguirre,Rajiv Chaturvedi,Chengbang Huang,Trevor M. Cickovski,J. Coffland,G. Thomas,Gabor Forgacs,Mark S. Alber,G. Hentschel,Stuart A. Newman,James A. Glazier
#t2004
#cBioinformatics
#index764302
#% 
#!
  
#*Dasty and UniProt DAS: a perfect pair for protein feature visualization.
#@Philip Jones,Nisha Vinod,Thomas Down,Andre Hackmann,Andreas Kähäri,Ernst Kretschmann,Antony F. Quinn,Daniela Wieser,Henning Hermjakob,Rolf Apweiler
#t2005
#cBioinformatics
#index764303
#% 
#!
  
#*A fuzzy guided genetic algorithm for operon prediction.
#@Elizabeth Jacob,Roschen Sasikumar,K. N. Ramachandran Nair
#t2005
#cBioinformatics
#index764304
#% 
#!
  
#*MINRMS: an efficient algorithm for determining protein structure similarity using root-mean-squared-distance.
#@Andrew I. Jewett,Conrad C. Huang,Thomas E. Ferrin
#t2003
#cBioinformatics
#index764305
#% 
#!
  
#*Incorporating gene functions as priors in model-based clustering of microarray gene expression data.
#@Wei Pan
#t2006
#cBioinformatics
#index764306
#% 
#!
  
#*A novel means of using gene clusters in a two-step empirical Bayes method for predicting classes of samples.
#@Yuan Ji,Kam-Wah Tsui,KyungMann Kim
#t2005
#cBioinformatics
#index764308
#% 
#!
  
#*Compositional symmetries in complete genomes.
#@Dong Qi,A. Jamie Cuticchia
#t2001
#cBioinformatics
#index764309
#% 
#!
  
#*MtbRegList, a database dedicated to the analysis of transcriptional regulation in Mycobacterium tuberculosis.
#@Pierre-Étienne Jacques,Alain L. Gervais,Mathieu Cantin,Jean-François Lucier,Guillaume Dallaire,Geneviève Drouin,Luc Gaudreau,Jean Goulet,Ryszard Brzezinski
#t2005
#cBioinformatics
#index764310
#% 
#!
  
#*Genetic Network Analyzer: qualitative simulation of genetic regulatory networks.
#@Hidde de Jong,Johannes Geiselmann,Céline Hernandez,Michel Page
#t2003
#cBioinformatics
#index764311
#% 
#!
  
#*Adaptive encoding neural networks for the recognition of human signal peptide cleavage sites.
#@B. Jagla,Johannes Schuchhardt
#t2000
#cBioinformatics
#index764312
#% 
#!
  
#*Breakpoint identification and smoothing of array comparative genomic hybridization data.
#@Kees Jong,Elena Marchiori,Gerrit Meijer,Aad van der Vaart,Bauke Ylstra
#t2004
#cBioinformatics
#index764313
#% 
#!
  
#*Local-pooled-error test for identifying differentially expressed genes with a small number of replicated microarrays.
#@Nitin Jain,Jayant Thatte,Thomas Braciale,Klaus Ley,Michael O'Connell,Jae K. Lee
#t2003
#cBioinformatics
#index764314
#% 
#!
  
#*The need for a human gene index.
#@C. Victor Jongeneel
#t2000
#cBioinformatics
#index764315
#% 
#!
  
#*Prediction methods and databases within chemoinformatics: emphasis on drugs and drug candidates.
#@Svava Ósk Jónsdóttir,Flemming Steen Jørgensen,Søren Brunak
#t2005
#cBioinformatics
#index764317
#% 
#!
  
#*TreeGeneBrowser: phylogenetic data mining of gene sequences from public databases.
#@Ingrid B. Jakobsen,Jennifer A. Saleeba,Michael Poidinger,Timothy G. Littlejohn
#t2001
#cBioinformatics
#index764318
#% 
#!
  
#*Sequence and structural aspects of functional diversification in class I-mannosidase evolution.
#@I. King Jordan,G. Reid Bishop,Daniel S. Gonzalez
#t2001
#cBioinformatics
#index764319
#% 
#!
  
#*The SuMo server: 3D search for protein functional sites.
#@Martin Jambon,Olivier Andrieu,Christophe Combet,Gilbert Deléage,François Delfaud,Christophe Geourjon
#t2005
#cBioinformatics
#index764320
#% 
#!
  
#*DNA microarray data imputation and significance analysis of differential expression.
#@Rebecka Jörnsten,Hui-Yu Wang,William J. Welsh,Ming Ouyang
#t2005
#cBioinformatics
#index764321
#% 
#!
  
#*Sensitivity and specificity of five abundance estimators for high-density oligonucleotide microarrays.
#@Andrew C. James,Jim G. Veitch,Ali R. Zareh,Timothy Triche
#t2004
#cBioinformatics
#index764322
#% 
#!
  
#*Simultaneous Gene Clustering and Subset Selection for Sample Classification Via MDL.
#@Rebecka Jörnsten,Bin Yu
#t2003
#cBioinformatics
#index764323
#% 
#!
  
#*Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure.
#@Fabrice Jossinet,Eric Westhof
#t2005
#cBioinformatics
#index764325
#% 
#!
  
#*Open Bioinformatics.
#@D. Curtis Jamison
#t2003
#cBioinformatics
#index764326
#% 
#!
  
#*COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations.
#@Raja Jothi,Elena Zotenko,Asba Tasneem,Teresa M. Przytycka
#t2006
#cBioinformatics
#index764327
#% 
#!
  
#*Identification of regulatory modules by co-clustering latent variable models: stem cell differentiation.
#@Je-Gun Joung,Dong-Ho Shin,Rho Hyun Seong,Byoung-Tak Zhang
#t2006
#cBioinformatics
#index764329
#% 
#!
  
#*ComboScreen facilitates the multiplex hybridization-based screening of high-density clone arrays.
#@D. Curtis Jamison,James W. Thomas,Eric D. Green
#t2000
#cBioinformatics
#index764330
#% 
#!
  
#*Applications of beta-mixture models in bioinformatics.
#@Yuan Ji,Chunlei Wu,Ping Liu,Jing Wang,Kevin R. Coombes
#t2005
#cBioinformatics
#index764331
#% 
#!
  
#*PCOAT: positional correlation analysis using multiple methods.
#@Yuan Qi,Nick V. Grishin
#t2004
#cBioinformatics
#index764332
#% 
#!
  
#*Classification of oligonucleotide fingerprints: application for microbial community and gene expression analyses.
#@Katechan Jampachaisri,Lea Valinsky,James Borneman,S. James Press
#t2005
#cBioinformatics
#index764333
#% 
#!
  
#*A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.
#@Yongmei Ji,Xing Xu,Gary D. Stormo
#t2004
#cBioinformatics
#index764334
#% 
#!
  
#*Clustering microarray gene expression data using weighted Chinese restaurant process.
#@Zhaohui S. Qin
#t2006
#cBioinformatics
#index764335
#% 
#!
  
#*Dynamic simulation of the human red blood cell metabolic network.
#@Neema Jamshidi,Jeremy S. Edwards,Tom Fahland,George M. Church,Bernhard O. Palsson
#t2001
#cBioinformatics
#index764336
#% 
#!
  
#*Doelan: a solution for quality control monitoring of microarray production.
#@Laurent Jourdren,Stéphane Le Crom
#t2005
#cBioinformatics
#index764337
#% 
#!
  
#*A motif of a microbial starch-binding domain found in human genethonin.
#@Stefan Janecek
#t2002
#cBioinformatics
#index764338
#% 
#!
  
#*MCQTL: multi-allelic QTL mapping in multi-cross design.
#@Marie-Françoise Jourjon,Sylvain Jasson,Jacques Marcel,Baba Ngom,Brigitte Mangin
#t2005
#cBioinformatics
#index764339
#% 
#!
  
#*Bioinformatics analyses of circular dichroism protein reference databases.
#@Robert W. Janes
#t2005
#cBioinformatics
#index764340
#% 
#!
  
#*Analysis of longitudinal metabolomics data.
#@Jeroen J. Jansen,Huub C. J. Hoefsloot,Hans F. M. Boelens,Jan van der Greef,Age K. Smilde
#t2004
#cBioinformatics
#index764342
#% 
#!
  
#*HMMGEP: clustering gene expression data using hidden Markov models.
#@Xinglai Ji,Yuan Yuan,Jesse Li-Ling,Yanda Li,Zhirong Sun
#t2004
#cBioinformatics
#index764343
#% 
#!
  
#*Supervised cluster analysis for microarray data based on multivariate Gaussian mixture.
#@Yi Qu,Shizhong Xu
#t2004
#cBioinformatics
#index764344
#% 
#!
  
#*COmplete GENome Tracking (COGENT): A Flexible Data Environment for Computational Genomics.
#@Paul Janssen,Anton J. Enright,Benjamin Audit,Ildefonso Cases,Leon Goldovsky,Nicola Harte,Victor Kunin,Christos A. Ouzounis
#t2003
#cBioinformatics
#index764345
#% 
#!
  
#*Visualization and analysis of protein interactions.
#@Byong-Hyon Ju,Byungkyu Park,Jong H. Park,Kyungsook Han
#t2003
#cBioinformatics
#index764346
#% 
#!
  
#*Amplicon: software for designing PCR primers on aligned DNA sequences.
#@Simon N. Jarman
#t2004
#cBioinformatics
#index764347
#% 
#!
  
#*GeneDn: for high-level expression design of heterologous genes in a prokaryotic system.
#@L. W. Ju,L. H. Xing,P. W. Hong,W. J. Jin
#t1998
#cBioinformatics
#index764348
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#!
  
#*Cleaver: software for identifying taxon specific restriction endonuclease recognition sites.
#@Simon N. Jarman
#t2006
#cBioinformatics
#index764349
#% 
#!
  
#*Genetic algorithm optimization for pre-processing and variable selection of spectroscopic data.
#@Roger M. Jarvis,Royston Goodacre
#t2005
#cBioinformatics
#index764351
#% 
#!
  
#*Capturing expert knowledge with argumentation: a case study in bioinformatics.
#@Benjamin R. Jefferys,Lawrence A. Kelley,Marek J. Sergot,John Fox,Michael J. E. Sternberg
#t2006
#cBioinformatics
#index764354
#% 
#!
  
#*Sample size for FDR-control in microarray data analysis.
#@Sin-Ho Jung
#t2005
#cBioinformatics
#index764355
#% 
#!
  
#*Algorithms for alignment of mass spectrometry proteomic data.
#@Neal O. Jeffries
#t2005
#cBioinformatics
#index764356
#% 
#!
  
#*Genexp-a genetic network simulation environment.
#@Tra Thi Vu,Jiri Vohradsky
#t2002
#cBioinformatics
#index764358
#% 
#!
  
#*Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes.
#@Rob Jelier,Guido Jenster,Lambert C. J. Dorssers,C. Christiaan van der Eijk,Erik M. van Mulligen,Barend Mons,Jan A. Kors
#t2005
#cBioinformatics
#index764359
#% 
#!
  
#*How accurately can we control the FDR in analyzing microarray data?
#@Sin-Ho Jung,Woncheol Jang
#t2006
#cBioinformatics
#index764360
#% 
#!
  
#*Prediction of human protein function according to Gene Ontology categories.
#@Lars Juhl Jensen,Ramneek Gupta,Hans Henrik Stærfeldt,Søren Brunak
#t2003
#cBioinformatics
#index764361
#% 
#!
  
#*BioOptimizer: a Bayesian scoring function approach to motif discovery.
#@Shane T. Jensen,Jun S. Liu
#t2004
#cBioinformatics
#index764363
#% 
#!
  
#*Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes.
#@Shane T. Jensen,Lei Shen,Jun S. Liu
#t2005
#cBioinformatics
#index764364
#% 
#!
  
#*Mapplet: a CORBA-based genome map viewer.
#@Kim Jungfer,Patricia Rodriguez-Tomé
#t1998
#cBioinformatics
#index764365
#% 
#!
  
#*Dotlet: diagonal plots in a Web browser.
#@Thomas Junier,Marco Pagni
#t2000
#cBioinformatics
#index764366
#% 
#!
  
#*mmsearch: a motif arrangement language and search program.
#@Thomas Junier,Marco Pagni,Philipp Bucher
#t2001
#cBioinformatics
#index764367
#% 
#!
  
#*Representation of functional information in the SWISS-PROT Data Bank.
#@V. L. Junker,Rolf Apweiler,Amos Bairoch
#t1999
#cBioinformatics
#index764368
#% 
#!
  
#*Transposable element annotation of the rice genome.
#@Nikoleta Juretic,Thomas E. Bureau,Richard M. Bruskiewich
#t2004
#cBioinformatics
#index764369
#% 
#!
  
#*Selecting signature oligonucleotides to identify organisms using DNA arrays.
#@Lars Kaderali,Alexander Schliep
#t2002
#cBioinformatics
#index764371
#% 
#!
  
#*CASPAR: a hierarchical bayesian approach to predict survival times in cancer from gene expression data.
#@Lars Kaderali,Thomas Zander,Ulrich Faigle,Jürgen Wolf,Joachim L. Schultze,Rainer Schrader
#t2006
#cBioinformatics
#index764372
#% 
#!
  
#*PhenomicDB: a multi-species genotype/phenotype database for comparative phenomics.
#@Abdullah Kahraman,Andrey Avramov,Lyubomir G. Nashev,Dimitar Popov,Rainer Ternes,Hans-Dieter Pohlenz,Bertram Weiss
#t2005
#cBioinformatics
#index764373
#% 
#!
  
#*An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes.
#@Robel Y. Kahsay,Guang R. Gao,Li Liao
#t2005
#cBioinformatics
#index764374
#% 
#!
  
#*CASA: a server for the critical assessment of protein sequence alignment accuracy.
#@Robel Y. Kahsay,Guoli Wang,Nataraj Dongre,Guang R. Gao,Roland L. Dunbrack Jr.
#t2002
#cBioinformatics
#index764375
#% 
#!
  
#*Quasi-consensus-based comparison of profile hidden Markov models for protein sequences.
#@Robel Y. Kahsay,Guoli Wang,Guang R. Gao,Li Liao,Roland L. Dunbrack Jr.
#t2005
#cBioinformatics
#index764376
#% 
#!
  
#*Speeding up whole-genome alignment by indexing frequency vectors.
#@Tamer Kahveci,Vebjorn Ljosa,Ambuj K. Singh
#t2004
#cBioinformatics
#index764377
#% 
#!
  
#*Computer simulation of the cellular arrangement using physical model in early cleavage of the nematode Caenorhabditis elegans.
#@Atsushi Kajita,Masayuki Yamamura,Yuji Kohara
#t2003
#cBioinformatics
#index764378
#% 
#!
  
#*MESHI: a new library of Java classes for molecular modeling.
#@Nir Kalisman,Ami Levi,Tetyana Maximova,Dan Reshef,Sharon Zafriri-Lynn,Yan Gleyzer,Chen Keasar
#t2005
#cBioinformatics
#index764379
#% 
#!
  
#*KIND-a non-redundant protein database.
#@Yvonne Kallberg,Bengt Persson
#t1999
#cBioinformatics
#index764380
#% 
#!
  
#*Interactive gene-order comparison for multiple small genomes.
#@Aaron Kaluszka,Cynthia Gibas
#t2004
#cBioinformatics
#index764381
#% 
#!
  
#*An efficient randomized algorithm for contact-based NMR backbone resonance assignment.
#@Hetunandan Kamisetty,Chris Bailey-Kellogg,Gopal Pandurangan
#t2006
#cBioinformatics
#index764384
#% 
#!
  
#*Metatool 5.0: fast and flexible elementary modes analysis.
#@Axel von Kamp,Stefan Schuster
#t2006
#cBioinformatics
#index764385
#% 
#!
  
#*USAGE: a web-based approach towards the analysis of SAGE data.
#@Antoine H. C. van Kampen,B. D. C. van Schaik,E. Pauws,E. M. C. Michiels,J. M. Ruijter,H. N. Caron,R. Versteeg,S. H. Heisterkamp,Jack A. M. Leunissen,F. Baas,M. van der Mee
#t2000
#cBioinformatics
#index764386
#% 
#!
  
#*Efficient primer design algorithms.
#@Thomas Kämpke,Markus Kieninger,Michael Mecklenburg
#t2001
#cBioinformatics
#index764387
#% 
#!
  
#*Interactive InterPro-based comparisons of proteins in whole genomes.
#@Alexander Kanapin,Rolf Apweiler,Margaret Biswas,Wolfgang Fleischmann,Youla Karavidopoulou,Paul Kersey,Evgenia V. Kriventseva,Virginie Mittard,Nicola J. Mulder,Thomas M. Oinn,Isabelle Phan,Florence Servant,Evgeni M. Zdobnov
#t2002
#cBioinformatics
#index764388
#% 
#!
  
#*A structure-based method for protein sequence alignment.
#@Maricel G. Kann,Paul A. Thiessen,Anna R. Panchenko,Alejandro A. Schäffer,Stephen F. Altschul,Stephen H. Bryant
#t2005
#cBioinformatics
#index764390
#% 
#!
  
#*Distributions of pI versus pH provide prior information for the design of crystallization screening experiments: response to comment on 'Protein isoelectric point as a predictor for increased crystallization screening efficiency'.
#@Katherine A. Kantardjieff,Mortaza Jamshidian,Bernhard Rupp
#t2004
#cBioinformatics
#index764391
#% 
#!
  
#*Protein isoelectric point as a predictor for increased crystallization screening efficiency.
#@Katherine A. Kantardjieff,Bernhard Rupp
#t2004
#cBioinformatics
#index764392
#% 
#!
  
#*MultiPLX: automatic grouping and evaluation of PCR primers.
#@Lauris Kaplinski,Reidar Andreson,Tarmo Puurand,Maido Remm
#t2005
#cBioinformatics
#index764393
#% 
#!
  
#*A criticality-based framework for task composition in multi-agent bioinformatics integration systems.
#@Konstantinos Karasavvas,Richard A. Baldock,Albert Burger
#t2005
#cBioinformatics
#index764395
#% 
#!
  
#*LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources.
#@Rachel Karchin,Mark Diekhans,Libusha Kelly,Daryl J. Thomas,Ursula Pieper,Narayanan Eswar,David Haussler,Andrej Sali
#t2005
#cBioinformatics
#index764397
#% 
#!
  
#*Weighting hidden Markov models for maximum discrimination.
#@Rachel Karchin,Richard Hughey
#t1998
#cBioinformatics
#index764398
#% 
#!
  
#*Classifying G-protein coupled receptors with support vector machines.
#@Rachel Karchin,Kevin Karplus,David Haussler
#t2002
#cBioinformatics
#index764399
#% 
#!
  
#*Modeling genome evolution with a diffusion approximation of a birth-and-death process.
#@Georgy P. Karev,Faina S. Berezovskaya,Eugene V. Koonin
#t2005
#cBioinformatics
#index764400
#% 
#!
  
#*Simple stochastic birth andz death models of genome evolution: was there enough time for us to evolve?
#@Georgy P. Karev,Yuri I. Wolf,Eugene V. Koonin
#t2003
#cBioinformatics
#index764401
#% 
#!
  
#*An ontology for biological function based on molecular interactions.
#@Peter D. Karp
#t2000
#cBioinformatics
#index764403
#% 
#!
  
#*Database verification studies of SWISS-PROT and GenBank.
#@Peter D. Karp,Suzanne M. Paley,Jingchun Zhu
#t2001
#cBioinformatics
#index764407
#% 
#!
  
#*Tailored gene array databases: applications in mechanistic toxicology.
#@Tatiana V. Karpinets,Brent D. Foy,John M. Frazier
#t2004
#cBioinformatics
#index764408
#% 
#!
  
#*Hidden Markov models for detecting remote protein homologies.
#@Kevin Karplus,Christian Barrett,Richard Hughey
#t1998
#cBioinformatics
#index764409
#% 
#!
  
#*Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set.
#@Kevin Karplus,Birong Hu
#t2001
#cBioinformatics
#index764410
#% 
#!
  
#*Calibrating -values for hidden Markov models using reverse-sequence null models.
#@Kevin Karplus,Rachel Karchin,George Shackelford,Richard Hughey
#t2005
#cBioinformatics
#index764411
#% 
#!
  
#*AiO, combining DNA/protein programs and oligo-management.
#@Christiaan Karreman
#t2002
#cBioinformatics
#index764412
#% 
#!
  
#*Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs.
#@Nadav Kashtan,Shalev Itzkovitz,Ron Milo,Uri Alon
#t2004
#cBioinformatics
#index764414
#% 
#!
  
#*Stem Trace: an interactive visual tool for comparative RNA structure analysis.
#@Wojciech Kasprzak,Bruce A. Shapiro
#t1999
#cBioinformatics
#index764415
#% 
#!
  
#*A hybrid machine-learning approach for segmentation of protein localization data.
#@Peter M. Kasson,Johannes B. Huppa,Mark M. Davis,Axel T. Brünger
#t2005
#cBioinformatics
#index764416
#% 
#!
  
#*Clustering of diverse genomic data using information fusion.
#@Jyotsna Kasturi,Raj Acharya
#t2005
#cBioinformatics
#index764417
#% 
#!
  
#*An information theoretic approach for analyzing temporal patterns of gene expression.
#@Jyotsna Kasturi,Raj Acharya,Murali Ramanathan
#t2003
#cBioinformatics
#index764418
#% 
#!
  
#*MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data.
#@Mikko Katajamaa,Jarkko Miettinen,Matej Oresic
#t2006
#cBioinformatics
#index764419
#% 
#!
  
#*Selective integration of multiple biological data for supervised network inference.
#@Tsuyoshi Kato,Koji Tsuda,Kiyoshi Asai
#t2005
#cBioinformatics
#index764421
#% 
#!
  
#*TRES: comparative promoter sequence analysis.
#@Mukund V. Katti,Meena K. Sakharkar,Prabhakar K. Ranjekar,Vidya S. Gupta
#t2000
#cBioinformatics
#index764422
#% 
#!
  
#*Applying signal theory to the analysis of biomolecules.
#@Gerhard Kauer,Helmut Blöcker
#t2003
#cBioinformatics
#index764423
#% 
#!
  
#*Analysis of disturbed images.
#@Gerhard Kauer,Helmut Blöcker
#t2004
#cBioinformatics
#index764424
#% 
#!
  
#*BetaTPred: prediction of beta-TURNS in a protein using statistical algorithms.
#@Harpreet Kaur,G. P. S. Raghava
#t2002
#cBioinformatics
#index764425
#% 
#!
  
#*An evaluation of ß-turn prediction methods.
#@Harpreet Kaur,G. P. S. Raghava
#t2002
#cBioinformatics
#index764426
#% 
#!
  
#*A neural network method for prediction of ?-turn types in proteins using evolutionary information.
#@Harpreet Kaur,G. P. S. Raghava
#t2004
#cBioinformatics
#index764427
#% 
#!
  
#*Graph-based clustering for finding distant relationships in a large set of protein sequences.
#@Hideya Kawaji,Yoichi Takenaka,Hideo Matsuda
#t2004
#cBioinformatics
#index764428
#% 
#!
  
#*Prediction of glycan structures from gene expression data based on glycosyltransferase reactions.
#@Shin Kawano,Kosuke Hashimoto,Takashi Miyama,Susumu Goto,Minoru Kanehisa
#t2005
#cBioinformatics
#index764429
#% 
#!
  
#*Semiotes: a semantics for sharing.
#@Toni Kazic
#t2000
#cBioinformatics
#index764430
#% 
#!
  
#*PIRA PCR designer for restriction analysis of single nucleotide polymorphisms.
#@Xiayi Ke,Andrew Collins,Shu Ye
#t2001
#cBioinformatics
#index764431
#% 
#!
  
#*PCR designer for restriction analysis of various types of sequence mutation.
#@Xiayi Ke,Andrew Collins,Shu Ye
#t2002
#cBioinformatics
#index764432
#% 
#!
  
#*LDB2000: sequence-based integrated maps of the human genome.
#@Xiayi Ke,William Tapper,Andrew Collins
#t2001
#cBioinformatics
#index764433
#% 
#!
  
#*DSEARCH: sensitive database searching using distributed computing.
#@Thomas M. Keane,Thomas J. Naughton
#t2005
#cBioinformatics
#index764434
#% 
#!
  
#*DPRml: distributed phylogeny reconstruction by maximum likelihood.
#@Thomas M. Keane,Thomas J. Naughton,Simon A. A. Travers,James O. McInerney,G. P. McCormack
#t2005
#cBioinformatics
#index764435
#% 
#!
  
#*SBMLToolbox: an SBML toolbox for MATLAB users.
#@Sarah M. Keating,Benjamin J. Bornstein,Andrew Finney,Michael Hucka
#t2006
#cBioinformatics
#index764436
#% 
#!
  
#*Finding motifs in the twilight zone.
#@Uri Keich,Pavel A. Pevzner
#t2002
#cBioinformatics
#index764438
#%1009270
#%558679
#%558715
#%622635
#%438637
#%481359
#%438766
#!
  
#*U Subtle motifs: defining the limits of motif finding algorithms.
#@Uri Keich,Pavel A. Pevzner
#t2002
#cBioinformatics
#index764439
#% 
#!
  
#*Algorithms for sequence analysis via mutagenesis.
#@Jonathan M. Keith,Peter Adams,Darryn E. Bryant,Duncan A. E. Cochran,Gita H. Lala,Keith R. Mitchelson
#t2004
#cBioinformatics
#index764440
#% 
#!
  
#*A simulated annealing algorithm for finding consensus sequences.
#@Jonathan M. Keith,Peter Adams,Darryn E. Bryant,Dirk P. Kroese,Keith R. Mitchelson,Duncan A. E. Cochran,Gita H. Lala
#t2002
#cBioinformatics
#index764441
#% 
#!
  
#*Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations.
#@Alexander E. Kel,Tatiana Konovalova,T. Waleev,Evgeny Cheremushkin,Olga V. Kel-Margoulis,Edgar Wingender
#t2006
#cBioinformatics
#index764442
#% 
#!
  
#*A genetic algorithm for designing gene family-specific oligonucleotide sets used for hybridization: the G protein-coupled receptor protein superfamily.
#@Alexander E. Kel,Andrey A. Ptitsyn,Vladimir N. Babenko,Sebastian Meier-Ewert,Hans Lehrach
#t1998
#cBioinformatics
#index764443
#% 
#!
  
#*Recognition of multiple patterns in unaligned sets of sequences: comparison of kernel clustering method with other methods.
#@Alexander E. Kel,Yuri Tikunov,Nico Voss,Edgar Wingender
#t2004
#cBioinformatics
#index764445
#% 
#!
  
#*Identification of regulatory elements using a feature selection method.
#@Sündüz Keles,Mark J. van der Laan,Michael B. Eisen
#t2002
#cBioinformatics
#index764446
#% 
#!
  
#*Regulatory motif finding by logic regression.
#@Sündüz Keles,Mark J. van der Laan,Chris Vulpe
#t2004
#cBioinformatics
#index764447
#% 
#!
  
#*Predicting gene function through systematic analysis and quality assessment of high-throughput data.
#@Patrick Kemmeren,Thessa T. J. P. Kockelkorn,Theo Bijma,Rogier Donders,Frank Holstege
#t2005
#cBioinformatics
#index764448
#% 
#!
  
#*: an R package for detecting differential gene expression without gene expression summaries.
#@Richard E. Kennedy,Robnet T. Kerns,Xiangrong Kong,Kellie J. Archer,Michael F. Miles
#t2006
#cBioinformatics
#index764450
#% 
#!
  
#*Statistical analysis of antigen receptor spectratype data.
#@Thomas B. Kepler,Min He,John K. Tomfohr,Blythe H. Devlin,Marcella Sarzotti,M. Louise Markert
#t2005
#cBioinformatics
#index764451
#% 
#!
  
#*Visualization for genomics: the Microbial Genome Viewer.
#@Robert Kerkhoven,Frank H. J. van Enckevort,Jos Boekhorst,Douwe Molenaar,Roland J. Siezen
#t2004
#cBioinformatics
#index764452
#% 
#!
  
#*VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL.
#@Paul Kersey,Henning Hermjakob,Rolf Apweiler
#t2000
#cBioinformatics
#index764453
#% 
#!
  
#*Generalized Venn diagrams: a new method of visualizing complex genetic set relations.
#@Hans A. Kestler,André Müller,Thomas M. Gress,Malte Buchholz
#t2005
#cBioinformatics
#index764454
#% 
#!
  
#*GoFigure: Automated Gene OntologyTM annotation.
#@Salim Khan,Gang Situ,Keith Decker,Carl Schmidt
#t2003
#cBioinformatics
#index764455
#% 
#!
  
#*Ontological analysis of gene expression data: current tools, limitations, and open problems.
#@Purvesh Khatri,Sorin Draghici
#t2005
#cBioinformatics
#index764457
#% 
#!
  
#*A semantic analysis of the annotations of the human genome.
#@Purvesh Khatri,Bogdan Done,Archana Rao,Arina Done,Sorin Draghici
#t2005
#cBioinformatics
#index764458
#% 
#!
  
#*Statistical estimation of gene expression using multiple laser scans of microarrays.
#@Mizanur R. Khondoker,Chris A. Glasbey,Bruce J. Worton
#t2006
#cBioinformatics
#index764459
#% 
#!
  
#*Hybrid simulation of cellular behavior.
#@Thomas R. Kiehl,Robert M. Mattheyses,Melvin K. Simmons
#t2004
#cBioinformatics
#index764464
#% 
#!
  
#*Combining frequency and positional information to predict transcription factor binding sites.
#@Szymon M. Kielbasa,Jan O. Korbel,Dieter Beule,Johannes Schuchhardt,Hanspeter Herzel
#t2001
#cBioinformatics
#index764465
#% 
#!
  
#*NetAcet: prediction of N-terminal acetylation sites.
#@Lars Kiemer,Jannick Dyrløv Bendtsen,Nikolaj Blom
#t2005
#cBioinformatics
#index764466
#% 
#!
  
#*STOCKS: STOChastic Kinetic Simulations of biochemical systems with Gillespie algorithm.
#@Andrzej M. Kierzek
#t2002
#cBioinformatics
#index764467
#% 
#!
  
#*Predicting fold novelty based on ProtoNet hierarchical classification.
#@Ilona Kifer,Ori Sasson,Michal Linial
#t2005
#cBioinformatics
#index764468
#% 
#!
  
#*The carbohydrate sequence markup language (CabosML): an XML description of carbohydrate structures.
#@Norihiro Kikuchi,Akihiko Kameyama,Shuuichi Nakaya,Hiromi Ito,Takashi Sato,Toshihide Shikanai,Yoriko Takahashi,Hisashi Narimatsu
#t2005
#cBioinformatics
#index764469
#% 
#!
  
#*Dynamic modeling of genetic networks using genetic algorithm and S-system.
#@Shinichi Kikuchi,Daisuke Tominaga,Masanori Arita,Katsutoshi Takahashi,Masaru Tomita
#t2003
#cBioinformatics
#index764470
#% 
#!
  
#*Large-scale co-evolution analysis of protein structural interlogues using the global protein structural interactome map (PSIMAP).
#@Wan K. Kim,Dan M. Bolser,Jong H. Park
#t2004
#cBioinformatics
#index764471
#% 
#!
  
#*ChromoViz: multimodal visualization of gene expression data onto chromosomes using scalable vector graphics.
#@Jihoon Kim,Hee-Joon Chung,Chan Hee Park,Woong-Yang Park,Ju Han Kim
#t2004
#cBioinformatics
#index764473
#% 
#!
  
#*Missing value estimation for DNA microarray gene expression data: local least squares imputation.
#@Hyunsoo Kim,Gene H. Golub,Haesun Park
#t2005
#cBioinformatics
#index764474
#% 
#!
  
#*Missing value estimation for DNA microarray gene expression data: local least squares imputation.
#@Hyunsoo Kim,Gene H. Golub,Haesun Park
#t2006
#cBioinformatics
#index764475
#% 
#!
  
#*HESAS: HERVs Expression and Structure Analysis System.
#@Tae-Hyung Kim,Yeo-Jin Jeon,Woo-Yeon Kim,Heui-Soo Kim
#t2005
#cBioinformatics
#index764476
#% 
#!
  
#*Discovering hidden viral piracy.
#@Eddo Kim,Yossef Kliger
#t2005
#cBioinformatics
#index764477
#% 
#!
  
#*Statistical methods of translating microarray data into clinically relevant diagnostic information in colorectal cancer.
#@Byung Soo Kim,Inyoung Kim,Sunho Lee,Sangcheol Kim,Sun Young Rha,Hyun Cheol Chung
#t2005
#cBioinformatics
#index764478
#% 
#!
  
#*Inferring functional information from domain co-evolution.
#@Yohan Kim,Mehmet Koyutürk,Umut Topkara,Ananth Grama,Shankar Subramaniam
#t2006
#cBioinformatics
#index764479
#% 
#!
  
#*Detecting clusters of different geometrical shapes in microarray gene expression data.
#@Dae-Won Kim,Kwang Hyung Lee,Doheon Lee
#t2005
#cBioinformatics
#index764480
#% 
#!
  
#*Prediction of phosphorylation sites using SVMs.
#@Jong-Hun Kim,Juyoung Lee,Bermseok Oh,Kuchan Kimm,InSong Koh
#t2004
#cBioinformatics
#index764481
#% 
#!
  
#*Identification of novel multi-transmembrane proteins from genomic databases using quasi-periodic structural properties.
#@Junhyong Kim,Etsuko N. Moriyama,Coral G. Warr,Peter J. Clyne,John R. Carlson
#t2000
#cBioinformatics
#index764482
#% 
#!
  
#*ArrayCyGHt: a web application for analysis and visualization of array-CGH data.
#@Su Young Kim,Suk Woo Nam,Sug Hyung Lee,Won Sang Park,Nam Jin Yoo,Jung Young Lee,Yeun-Jun Chung
#t2005
#cBioinformatics
#index764483
#% 
#!
  
#*TFExplorer: integrated analysis database for predicted transcription regulatory elements.
#@Jinsoo Kim,Jungmin Seo,Young Seek Lee,Sangsoo Kim
#t2005
#cBioinformatics
#index764485
#% 
#!
  
#*BioContrasts: extracting and exploiting protein-protein contrastive relations from biomedical literature.
#@Jung-jae Kim,Zhuo Zhang,Jong C. Park,See-Kiong Ng
#t2006
#cBioinformatics
#index764486
#% 
#!
  
#*Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm.
#@Shuhei Kimura,Kaori Ide,Aiko Kashihara,Makoto Kano,Mariko Hatakeyama,Ryoji Masui,Noriko Nakagawa,Shigeyuki Yokoyama,Seiki Kuramitsu,Akihiko Konagaya
#t2005
#cBioinformatics
#index764487
#% 
#!
  
#*OBIYagns: a grid-based biochemical simulator with a parameter estimator.
#@Shuhei Kimura,Takuji Kawasaki,Mariko Hatakeyama,Takashi Naka,Fumikazu Konishi,Akihiko Konagaya
#t2004
#cBioinformatics
#index764488
#% 
#!
  
#*On the use of qualitative reasoning to simulate and identify metabolic pathway.
#@Ross D. King,Simon M. Garrett,George Macleod Coghill
#t2005
#cBioinformatics
#index764493
#% 
#!
  
#*The utility of different representations of protein sequence for predicting functional class.
#@Ross D. King,Andreas Karwath,Amanda Clare,Luc Dehaspe
#t2001
#cBioinformatics
#index764494
#% 
#!
  
#*Protein complex prediction via cost-based clustering.
#@A. D. King,Natasa Przulj,Igor Jurisica
#t2004
#cBioinformatics
#index764495
#% 
#!
  
#*Confirmation of data mining based predictions of protein function.
#@Ross D. King,Paul H. Wise,Amanda Clare
#t2004
#cBioinformatics
#index764497
#% 
#!
  
#*Solving and analyzing side-chain positioning problems using linear and integer programming.
#@Carleton L. Kingsford,Bernard Chazelle,Mona Singh
#t2005
#cBioinformatics
#index764498
#% 
#!
  
#*Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins.
#@Akira R. Kinjo,Ken Nishikawa
#t2004
#cBioinformatics
#index764499
#% 
#!
  
#*Recoverable one-dimensional encoding of three-dimensional protein structures.
#@Akira R. Kinjo,Ken Nishikawa
#t2005
#cBioinformatics
#index764500
#% 
#!
  
#*eF-site and PDBjViewer: database and viewer for protein functional sites.
#@Kengo Kinoshita,Haruki Nakamura
#t2004
#cBioinformatics
#index764501
#% 
#!
  
#*P-cats: prediction of catalytic residues in proteins from their tertiary structures.
#@Kengo Kinoshita,Motonori Ota
#t2005
#cBioinformatics
#index764502
#% 
#!
  
#*NvAssign: protein NMR spectral assignment with NMRView.
#@Nigel I. Kirby,Eugene F. DeRose,Robert E. London,Geoffrey A. Mueller
#t2004
#cBioinformatics
#index764505
#% 
#!
  
#*Map2mod - a server for evaluation of crystallographic models and their agreement with electron density maps.
#@Olga Kirillova,Wladek Minor
#t2006
#cBioinformatics
#index764506
#% 
#!
  
#*Extracting relations between promoter sequences and their strengths from microarray data.
#@Hisanori Kiryu,Taku Oshima,Kiyoshi Asai
#t2005
#cBioinformatics
#index764508
#% 
#!
  
#*tPatternHunter: gapped, fast and sensitive translated homology search .
#@Derek Kisman,Ming Li,Bin Ma,Li Wang
#t2005
#cBioinformatics
#index764509
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#*Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa).
#@Noriyuki Kitagawa,Takanori Washio,Shunichi Kosugi,Tomoya Yamashita,Kenji Higashi,Hiroshi Yanagawa,Kenichi Higo,Koji Satoh,Yasuhiro Ohtomo,Tomomi Sunako,Kazuo Murakami,Kenichi Matsubara,Jun Kawai,Piero Carninci,Yoshihide Hayashizaki,Shoshi Kikuchi,Masaru Tomita
#t2005
#cBioinformatics
#index764510
#% 
#!
  
#*Optimization of cDNA-AFLP experiments using genomic sequence data.
#@Teemu Kivioja,Mikko Arvas,Markku Saloheimo,Merja Penttilä,Esko Ukkonen
#t2005
#cBioinformatics
#index764511
#% 
#!
  
#*Minimal cut sets in biochemical reaction networks.
#@Steffen Klamt,Ernst Dieter Gilles
#t2004
#cBioinformatics
#index764512
#% 
#!
  
#*FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.
#@Steffen Klamt,Jörg Stelling,Martin Ginkel,Ernst Dieter Gilles
#t2003
#cBioinformatics
#index764513
#% 
#!
  
#*GeneGenerator - a flexible algorithm for gene prediction and its application to maize sequences.
#@Jürgen Kleffe,Klaus Hermann,W. Vahrson,Burghardt Wittig,Volker Brendel
#t1998
#cBioinformatics
#index764517
#% 
#!
  
#*Parallelized multiple alignment.
#@Jens Kleinjung,Nigel Douglas,Jaap Heringa
#t2002
#cBioinformatics
#index764519
#% 
#!
  
#*Query Chem: a Google-powered web search combining text and chemical structures.
#@Justin Klekota,Frederick P. Roth,Stuart L. Schreiber
#t2006
#cBioinformatics
#index764520
#% 
#!
  
#*Functional promoter modules can be detected by formal models independent of overall nucleotide sequence similarity.
#@Andreas Klingenhoff,Kornelie Frech,Kerstin Quandt,Thomas Werner
#t1999
#cBioinformatics
#index764521
#% 
#!
  
#*Finding regulatory modules through large-scale gene-expression data analysis.
#@M. Kloster,C. Tang,N. S. Wingreen
#t2005
#cBioinformatics
#index764522
#% 
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#*Evaluation of HIV-1 kinetic models using quantitative discrimination analysis.
#@Andrea L. Knorr,Ranjan Srivastava
#t2005
#cBioinformatics
#index764524
#% 
#!
  
#*Microarray Data Analysis Toolbox (MDAT): for normalization, adjustment and analysis of gene expression data.
#@Nicholas Knowlton,Igor Dozmorov,Michael Centola
#t2004
#cBioinformatics
#index764525
#% 
#!
  
#*Promoter2.0: for the recognition of PolII promoter sequences.
#@Steen Knudsen
#t1999
#cBioinformatics
#index764526
#% 
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#*RNA secondary structure prediction using stochastic context-free grammars and evolutionary history.
#@Bjarne Knudsen,Jotun Hein
#t1999
#cBioinformatics
#index764527
#% 
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#*Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber.
#@Ina Koch,Björn H. Junker,Monika Heiner
#t2005
#cBioinformatics
#index764528
#% 
#!
  
#*AUG codons at the beginning of protein coding sequences are frequent in eukaryotic mRNAs with a suboptimal start codon context.
#@Alexey V. Kochetov
#t2005
#cBioinformatics
#index764529
#% 
#!
  
#*Prediction of eukaryotic mRNA translational properties.
#@Alexey V. Kochetov,Mikhail P. Ponomarenko,Anatoly S. Frolov,L. L. Kisselev,Nikolay A. Kolchanov
#t1999
#cBioinformatics
#index764530
#% 
#!
  
#*Translational polymorphism as a potential source of plant proteins variety in .
#@Alexey V. Kochetov,Akinori Sarai
#t2004
#cBioinformatics
#index764531
#% 
#!
  
#*Application of compression-based distance measures to protein sequence classification: a methodological study.
#@András Kocsor,Attila Kertész-Farkas,László Kaján,Sándor Pongor
#t2006
#cBioinformatics
#index764532
#% 
#!
  
#*Thermodynamic properties of DNA sequences: characteristic values for the human genome.
#@Ryan T. Koehler,Nicolas Peyret
#t2005
#cBioinformatics
#index764533
#% 
#!
  
#*Highly specific prediction of phosphorylation sites in proteins.
#@Matthias Koenig,Niels Grabe
#t2004
#cBioinformatics
#index764534
#% 
#!
  
#*Mean curvature as a major determinant of ß-sheet propensity.
#@Eunhee Koh,Taehyo Kim,Hyun-soo Cho
#t2006
#cBioinformatics
#index764535
#% 
#!
  
#*BALL-rapid software prototyping in computational molecular biology.
#@Oliver Kohlbacher,Hans-Peter Lenhof
#t2000
#cBioinformatics
#index764536
#% 
#!
  
#*Graph-based analysis and visualization of experimental results with ONDEX.
#@Jacob Köhler,Jan Baumbach,Jan Taubert,Michael Specht,Andre Skusa,Alexander Rüegg,Christopher J. Rawlings,Paul Verrier,Stephan Philippi
#t2006
#cBioinformatics
#index764537
#% 
#!
  
#*SEMEDA: ontology based semantic integration of biological databases.
#@Jacob Köhler,Stephan Philippi,Matthias Lange
#t2003
#cBioinformatics
#index764538
#% 
#!
  
#*Automatic extraction of gene/protein biological functions from biomedical text.
#@Asako Koike,Yoshiki Niwa,Toshihisa Takagi
#t2005
#cBioinformatics
#index764539
#% 
#!
  
#*QuickLIMS: facilitating the data management for DNA-microarray fabrication.
#@Felix Kokocinski,Gunnar Wrobel,Meinhard Hahn,Peter Lichter
#t2003
#cBioinformatics
#index764540
#% 
#!
  
#*The 2nd international conference on the Bioinformatics of Genome Regulation and Structure (BGRS-2000), Novosibirsk, August 2000.
#@Nikolay A. Kolchanov,Charlie Hodgman
#t2001
#cBioinformatics
#index764541
#% 
#!
  
#*Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide.
#@Nikos Kyrpides
#t1999
#cBioinformatics
#index764542
#% 
#!
  
#*SNAPper: gene order predicts gene function.
#@Grigory Kolesov,Hans-Werner Mewes,Dmitrij Frishman
#t2002
#cBioinformatics
#index764543
#% 
#!
  
#*VISTAL - a new 2D visualization tool of protein 3D structural alignments.
#@Rachel Kolodny,Barry Honig
#t2006
#cBioinformatics
#index764545
#% 
#!
  
#*Interactive data input into the GeneNet database.
#@F. A. Kolpakov,Elena A. Ananko
#t1999
#cBioinformatics
#index764547
#% 
#!
  
#*Incremental threading optimization (TITO) to help alignment and modelling of remote homologues.
#@Gilles Labesse,J. P. Mornon
#t1998
#cBioinformatics
#index764548
#% 
#!
  
#*GeneNet: a gene network database and its automated visualization.
#@F. A. Kolpakov,Elena A. Ananko,G. B. Kolesov,Nikolay A. Kolchanov
#t1998
#cBioinformatics
#index764549
#% 
#!
  
#*Multidimensional support vector machines for visualization of gene expression data.
#@Daisuke Komura,Hiroshi Nakamura,Shuichi Tsutsumi,Hiroyuki Aburatani,Sigeo Ihara
#t2005
#cBioinformatics
#index764551
#% 
#!
  
#*GeneTRACE - Reconstruction of Gene Content of Ancestral Species.
#@Victor Kunin,Christos A. Ouzounis
#t2003
#cBioinformatics
#index764552
#% 
#!
  
#*Differential gene expression detection using penalized linear regression models: the improved SAM statistics.
#@Baolin Wu
#t2005
#cBioinformatics
#index764553
#% 
#!
  
#*The properties of protein family space depend on experimental design.
#@Victor Kunin,Sarah A. Teichmann,Martijn A. Huynen,Christos A. Ouzounis
#t2005
#cBioinformatics
#index764555
#% 
#!
  
#*Differential gene expression detection and sample classification using penalized linear regression models.
#@Baolin Wu
#t2006
#cBioinformatics
#index764556
#% 
#!
  
#*CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays.
#@Sek Won Kong,Kyu Baek Hwang,Richard D. Kim,Byoung-Tak Zhang,Steven A. Greenberg,Isaac S. Kohane,Peter J. Park
#t2005
#cBioinformatics
#index764559
#% 
#!
  
#*PHYSEAN: PHYsical SEquence ANalysis for the identification of protein domains on the basis of physical and chemical properties of amino acids.
#@Istvan Ladunga
#t1999
#cBioinformatics
#index764560
#% 
#!
  
#*MAP-O-MAT: internet-based linkage mapping.
#@X. Kong,Tara Cox Matise
#t2005
#cBioinformatics
#index764561
#% 
#!
  
#*Gene expression analysis on biochemical networks using the Potts spin model.
#@Rainer König,Roland Eils
#t2004
#cBioinformatics
#index764563
#% 
#!
  
#*PASS: prediction of activity spectra for biologically active substances.
#@Alexey Lagunin,Alla Stepanchikova,Dmitrii Filimonov,Vladimir Poroikov
#t2000
#cBioinformatics
#index764566
#% 
#!
  
#*Modified SIMPSON () algorithm for the full sibship reconstruction problem.
#@Dmitry A. Konovalov,Nigel Bajema,Bruce E. Litow
#t2005
#cBioinformatics
#index764567
#% 
#!
  
#*Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data.
#@Weil R. Lai,Mark D. Johnson,Raju Kucherlapati,Peter J. Park
#t2005
#cBioinformatics
#index764568
#% 
#!
  
#*Partition-distance via the assignment problem.
#@Dmitry A. Konovalov,Bruce E. Litow,Nigel Bajema
#t2005
#cBioinformatics
#index764569
#% 
#!
  
#*A statistical method for identifying differential gene-gene co-expression patterns.
#@Yinglei Lai,Baolin Wu,Liang Chen,Hongyu Zhao
#t2004
#cBioinformatics
#index764570
#% 
#!
  
#*Structured polychotomous machine diagnosis of multiple cancer types using gene expression.
#@Ja-Yong Koo,Insuk Sohn,Sujong Kim,Jae Won Lee
#t2006
#cBioinformatics
#index764571
#% 
#!
  
#*Analysis of matched mRNA measurements from two different microarray technologies.
#@Winston Patrick Kuo,Tor-Kristian Jenssen,Atul J. Butte,Lucila Ohno-Machado,Isaac S. Kohane
#t2002
#cBioinformatics
#index764572
#% 
#!
  
#*Differential gene expression detection and sample classification using penalized linear regression models.
#@Baolin Wu
#t2006
#cBioinformatics
#index764573
#% 
#!
  
#*GMD@CSB.DB: the Golm Metabolome Database.
#@Joachim Kopka,Nicolas Schauer,Stephan Krueger,Claudia Birkemeyer,Björn Usadel,Eveline Bergmüller,Peter Dörmann,Wolfram Weckwerth,Yves Gibon,Mark Stitt,Lothar Willmitzer,Alisdair R. Fernie,Dirk Steinhauser
#t2005
#cBioinformatics
#index764574
#% 
#!
  
#*Serial BLAST searching.
#@Ian Korf
#t2003
#cBioinformatics
#index764576
#% 
#!
  
#*ESyPred3D: Prediction of proteins 3D structures.
#@Christophe G. Lambert,Nadia Léonard,Xavier De Bolle,Eric Depiereux
#t2002
#cBioinformatics
#index764577
#% 
#!
  
#*MPBLAST : improved BLAST performance with multiplexed queries.
#@Ian Korf,Warren Gish
#t2000
#cBioinformatics
#index764578
#% 
#!
  
#*Evaluation of ontology development tools for bioinformatics.
#@Patrick Lambrix,Manal Habbouche,Marta Pérez
#t2003
#cBioinformatics
#index764579
#% 
#!
  
#*Common denominator procedure: a novel approach to gene-expression data mining for identification of phenotype-specific genes.
#@René Korn,Sascha Röhrig,Steffen Schulze-Kremer,Ulrich Brinkmann
#t2005
#cBioinformatics
#index764580
#% 
#!
  
#*REPuter: fast computation of maximal repeats in complete genomes.
#@Stefan Kurtz,Chris Schleiermacher
#t1999
#cBioinformatics
#index764581
#% 
#!
  
#*Genomic data visualization on the Web.
#@Wei Wu,William Stafford Noble
#t2004
#cBioinformatics
#index764582
#% 
#!
  
#*Using traveling salesman problem algorithms for evolutionary tree construction.
#@Chantal Korostensky,Gaston H. Gonnet
#t2000
#cBioinformatics
#index764583
#% 
#!
  
#*Advanced significance analysis of microarray data based on weighted resampling: a comparative study and application to gene deletions in Mycobacterium bovis.
#@Zoltan Kutalik,Jacqueline Inwald,Steve V. Gordon,R. Glyn Hewinson,Philip D. Butcher,Jason Hinds,Kwang-Hyun Cho,Olaf Wolkenhauer
#t2004
#cBioinformatics
#index764584
#% 
#!
  
#*A tool for gene expression based PubMed search through combining data sources.
#@Maksym Korotkiy,Rutger Middelburg,Henk Dekker,Frank van Harmelen,Jan Lankelma
#t2004
#cBioinformatics
#index764585
#% 
#!
  
#*HIVbase: a PC/Windows-based software offering storage and querying power for locally held HIV-1 genetic, experimental and clinical data.
#@Susanna L. Lamers,Scott Beason,Luke Dunlap,Robert Compton,Marco Salemi
#t2004
#cBioinformatics
#index764586
#% 
#!
  
#*Classification of bacterial species from proteomic data using combinatorial approaches incorporating artificial neural networks, cluster analysis and principal components analysis.
#@Lee Lancashire,O. Schmid,H. Shah,Graham R. Ball
#t2005
#cBioinformatics
#index764588
#% 
#!
  
#*Visualizing plant metabolomic correlation networks using clique-metabolite matrices.
#@Frank Kose,Wolfram Weckwerth,Thomas Linke,Oliver Fiehn
#t2001
#cBioinformatics
#index764589
#% 
#!
  
#*A novel sensitive method for the detection of user-defined compositional bias in biological sequences.
#@Igor B. Kuznetsov,Seungwoo Hwang
#t2006
#cBioinformatics
#index764590
#% 
#!
  
#*GMAP: a genomic mapping and alignment program for mRNA and EST sequence.
#@Thomas D. Wu,Colin K. Watanabe
#t2005
#cBioinformatics
#index764591
#% 
#!
  
#*ASAP: automated sequence annotation pipeline for web-based updating of sequence information with a local dynamic database.
#@Andrew V. Kossenkov,Frank J. Manion,Eugene V. Korotkov,Thomas D. Moloshok,Michael F. Ochs
#t2003
#cBioinformatics
#index764592
#% 
#!
  
#*A statistical framework for genomic data fusion.
#@Gert R. G. Lanckriet,Tijl De Bie,Nello Cristianini,Michael I. Jordan,William Stafford Noble
#t2004
#cBioinformatics
#index764593
#% 
#!
  
#*Design and implementation of a mosquito database through an entomological ontology.
#@Guillaume Koum,Augustin Yekel,Bengyella Ndifon,Frédéric Simard
#t2004
#cBioinformatics
#index764594
#% 
#!
  
#*Annotation pattern of ESTs from Spodoptera frugiperda Sf9 cells and analysis of the ribosomal protein genes reveal insect-specific features and unexpectedly low codon usage bias.
#@Igor Landais,M. Ogliastro,Kazuei Mita,Junko Nohata,Miguel López-Ferber,Martine Duonor-Cérutti,Toru Shimada,Philippe Fournier,Gérard Devauchelle
#t2003
#cBioinformatics
#index764595
#% 
#!
  
#*Erratum.
#@Guillaume Koum,Augustin Yekel,Bengyella Ndifon,Frédéric Simard
#t2005
#cBioinformatics
#index764596
#% 
#!
  
#*A non-parametric approach to translating gene region heterogeneity associated with phenotype into location heterogeneity.
#@Jeanne Kowalski
#t2001
#cBioinformatics
#index764598
#% 
#!
  
#*Non-parametric, hypothesis-based analysis of microarrays for comparison of several phenotypes.
#@Jeanne Kowalski,Charles Drake,Ronald H. Schwartz,Jonathan Powell
#t2004
#cBioinformatics
#index764600
#% 
#!
  
#*GenomePixelizer-a visualization program for comparative genomics within and between species.
#@A. Kozik,E. Kochetkova,R. Michelmore
#t2002
#cBioinformatics
#index764604
#% 
#!
  
#*Net Nearest Neighbor Analysis (NNNA) summarizes non-compensated dinucleotides within gene sequences.
#@Dorothy M. Lang
#t2000
#cBioinformatics
#index764605
#% 
#!
  
#*PedSplit: pedigree management for stratified analysis.
#@M. B. Lanktree,L. VanderBeek,F. M. Macciardi,J. L. Kennedy
#t2004
#cBioinformatics
#index764607
#% 
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#*Molecules to maps: tools for visualization and interaction in support of computational biology.
#@Eileen Kraemer,Thomas E. Ferrin
#t1998
#cBioinformatics
#index764608
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#*Fast computation of 3D radon transform via a direct Fourier method.
#@Salvatore Lanzavecchia,Pier Luigi Bellon
#t1998
#cBioinformatics
#index764609
#% 
#!
  
#*An analysis of gene-finding programs for Neurospora crassa.
#@Eileen Kraemer,Jian Wang,Jinhua Guo,Samuel Hopkins,Jonathan Arnold
#t2001
#cBioinformatics
#index764610
#% 
#!
  
#*caBIONet - A .NET wrapper to access and process genomic data stored at the National Cancer Institute's Center for Bioinformatics databases.
#@Piotr Kraj,Richard A. McIndoe
#t2005
#cBioinformatics
#index764612
#% 
#!
  
#*Alignment of 3D structures of macromolecular assemblies.
#@Salvatore Lanzavecchia,Francesca Cantele,Pier Luigi Bellon
#t2001
#cBioinformatics
#index764613
#% 
#!
  
#*Measuring the similarity of protein structures by means of the universal similarity metric.
#@Natalio Krasnogor,David A. Pelta
#t2004
#cBioinformatics
#index764614
#% 
#!
  
#*A comprehensive set of protein complexes in yeast: mining large scale protein-protein interaction screens.
#@Roland Krause,Christian von Mering,Peer Bork
#t2003
#cBioinformatics
#index764616
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#*WWW access to the SYSTERS protein sequence cluster set.
#@Antje Krause,Pierre Nicodème,Erich Bornberg-Bauer,Marc Rehmsmeier,Martin Vingron
#t1999
#cBioinformatics
#index764618
#% 
#!
  
#*The presence of signal peptide significantly affects transmembrane topology prediction.
#@Demelo Madrazo Lao,Masafumi Arai,Masami Ikeda,Toshio Shimizu
#t2002
#cBioinformatics
#index764619
#% 
#!
  
#*A set-theoretic approach to database searching and clustering.
#@Antje Krause,Martin Vingron
#t1998
#cBioinformatics
#index764620
#% 
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#*Improved approach for proteochemometrics modeling: application to organic compound - amine G protein-coupled receptor interactions.
#@Maris Lapinsh,Peteris Prusis,Staffan Uhlén,Jarl E. S. Wikberg
#t2005
#cBioinformatics
#index764621
#% 
#!
  
#*Statistically rigorous automated protein annotation.
#@Werner G. Krebs,Philip E. Bourne
#t2004
#cBioinformatics
#index764622
#% 
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#*DNA-binding requirements of the yeast protein Rap1p as selected in silico from ribosomal protein gene promoter sequences.
#@R. F. Lascaris,W. H. Mager,J. Planta
#t1999
#cBioinformatics
#index764623
#% 
#!
  
#*Autoregressive modeling of analytical sensor data can yield classifiers in the predictor coefficient parameter space.
#@Melissa D. Krebs,Robert D. Tingley,Julie E. Zeskind,Joung-Mo Kang,Maria E. Holmboe,Cristina E. Davis
#t2005
#cBioinformatics
#index764624
#% 
#!
  
#*DNA microarray normalization methods can remove bias from differential protein expression analysis of 2D difference gel electrophoresis results.
#@David P. Kreil,Natasha A. Karp,Kathryn S. Lilley
#t2004
#cBioinformatics
#index764626
#% 
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#*Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.
#@Alasdair T. R. Laurie,Richard M. Jackson
#t2005
#cBioinformatics
#index764627
#% 
#!
  
#*Comparison of sequence masking algorithms and the detection of biased protein sequence regions.
#@David P. Kreil,Christos A. Ouzounis
#t2003
#cBioinformatics
#index764628
#% 
#!
  
#*Erratum.
#@
#t2002
#cBioinformatics
#index764630
#% 
#!
  
#*Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT.
#@Ernst Kretschmann,Wolfgang Fleischmann,Rolf Apweiler
#t2001
#cBioinformatics
#index764631
#% 
#!
  
#*SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history.
#@Guillaume Laval,Laurent Excoffier
#t2004
#cBioinformatics
#index764632
#% 
#!
  
#*Models@Home: distributed computing in bioinformatics using a screensaver based approach.
#@Elmar Krieger,Gert Vriend
#t2002
#cBioinformatics
#index764633
#% 
#!
  
#*PHIRE, a deterministic approach to reveal regulatory elements in bacteriophage genomes.
#@R. Lavigne,W. D. Sun,G. Volckaert
#t2004
#cBioinformatics
#index764634
#% 
#!
  
#*Structural drift: a possible path to protein fold change.
#@S. Sri Krishna,Nick V. Grishin
#t2005
#cBioinformatics
#index764635
#% 
#!
  
#*TargetFinder: searching annotated sequence databases for target genes of transcription factors.
#@Giovanni Lavorgna,Alessandro Guffanti,G. Borsani,Andrea Ballabio,E. Boncinelli
#t1999
#cBioinformatics
#index764636
#% 
#!
  
#*PoPMuSiC, rationally designing point mutations in protein structures.
#@Jean Marc Kwasigroch,Dimitri Gilis,Yves Dehouck,Marianne Rooman
#t2002
#cBioinformatics
#index764638
#% 
#!
  
#*Development of a four-body statistical pseudo-potential to discriminate native from non-native protein conformations.
#@Bala Krishnamoorthy,Alexander Tropsha
#t2003
#cBioinformatics
#index764639
#% 
#!
  
#*Prelude&Fugue, predicting local protein structure, early folding regions and structural weaknesses.
#@Jean Marc Kwasigroch,Marianne Rooman
#t2006
#cBioinformatics
#index764640
#% 
#!
  
#*The Fourth Georgia Tech-University of Georgia International Conference in Bioinformatics: in silico Biology, Biological Networks, from Genomics to Epidemiology (November 13-16, 2003, Atlanta, Georgia, USA).
#@
#t2003
#cBioinformatics
#index764641
#% 
#!
  
#*Pathways Database System: An Integrated System for Biological Pathways.
#@Larkshmi Krishnamurthy,Joseph H. Nadeau,Gultekin Özsoyoglu,Z. Meral Özsoyoglu,Greg Schaeffer,Murat Tasan,Wanhong Xu
#t2003
#cBioinformatics
#index764642
#% 
#!
  
#*AntiHunter: searching BLAST output for EST antisense transcripts.
#@Giovanni Lavorgna,Luca Sessa,Alessandro Guffanti,Lelio Lassandro,Giorgio Casari
#t2004
#cBioinformatics
#index764643
#% 
#!
  
#*Exhaustive whole-genome tandem repeats search.
#@Arun Krishnan,Francis Tang
#t2004
#cBioinformatics
#index764644
#% 
#!
  
#*A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function.
#@Vidhya Gomathi Krishnan,David R. Westhead
#t2003
#cBioinformatics
#index764646
#% 
#!
  
#*Increased power of microarray analysis by use of an algorithm based on a multivariate procedure.
#@Kenneth A. Krohn,M. Eszlinger,R. Paschke,I. Roeder,E. Schuster
#t2005
#cBioinformatics
#index764648
#% 
#!
  
#*Inference of Transcriptional Regulation Relationships from Gene Expression Data.
#@Andrew T. Kwon,Holger H. Hoos,Raymond T. Ng
#t2003
#cBioinformatics
#index764649
#%558765
#!
  
#*Protein Refinement: A New Challenge For Casp In Its 10th Anniversary.
#@
#t2005
#cBioinformatics
#index764650
#% 
#!
  
#*Querying and computing with BioCyc databases.
#@Markus Krummenacker,Suzanne M. Paley,Lukas A. Mueller,Thomas Yan,Peter D. Karp
#t2005
#cBioinformatics
#index764651
#% 
#!
  
#*Protein backbone angle prediction with machine learning approaches.
#@Rui Kuang,Christina S. Leslie,An-Suei Yang
#t2004
#cBioinformatics
#index764653
#% 
#!
  
#*Reducing the variability in cDNA microarray image processing by Bayesian inference.
#@Neil D. Lawrence,Marta Milo,Mahesan Niranjan,Penny Rashbass,Stephan Soullier
#t2004
#cBioinformatics
#index764654
#% 
#!
  
#*Motif-based protein ranking by network propagation.
#@Rui Kuang,Jason Weston,William Stafford Noble,Christina S. Leslie
#t2005
#cBioinformatics
#index764655
#% 
#!
  
#*LumberJack: a heuristic tool for sequence alignment exploration and phylogenetic inference.
#@Carolyn J. Lawrence,Christian M. Zmasek,R. Kelly Dawe,Russell L. Malmberg
#t2004
#cBioinformatics
#index764656
#% 
#!
  
#*SignalViewer: analyzing microarray images.
#@R. J. Laws,Tracy L. Bergemann,Filemon Quiaoit,Lue Ping Zhao
#t2003
#cBioinformatics
#index764658
#% 
#!
  
#*Pathway analysis in metabolic databases via differential metabolic display (DMD).
#@Robert Küffner,Ralf Zimmer,Thomas Lengauer
#t2000
#cBioinformatics
#index764661
#% 
#!
  
#*On the quality of tree-based protein classification.
#@Betty Lazareva-Ulitsky,Karen Diemer,Paul D. Thomas
#t2005
#cBioinformatics
#index764662
#% 
#!
  
#*LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters.
#@Mary K. Kuhner
#t2006
#cBioinformatics
#index764663
#% 
#!
  
#*The Los Alamos hepatitis C sequence database.
#@Carla Kuiken,Karina Yusim,Laura Boykin,Russell Richardson
#t2005
#cBioinformatics
#index764665
#% 
#!
  
#*RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets.
#@Fulvio Lazzarato,Giuliana Franceschinis,Marco Botta,Francesca Cordero,Raffaele Calogero
#t2004
#cBioinformatics
#index764666
#% 
#!
  
#*Explicit formulation of different receptor-G-protein interactions and effector regulation.
#@Jyrki P. Kukkonen
#t2004
#cBioinformatics
#index764667
#% 
#!
  
#*Directed indices for exploring gene expression data.
#@Michael LeBlanc,Charles L. Kooperberg,Thomas M. Grogan,Thomas P. Miller
#t2003
#cBioinformatics
#index764668
#% 
#!
  
#*Identification of coding and non-coding sequences using local Hölder exponent formalism.
#@Onkar C. Kulkarni,R. Vigneshwar,Valadi K. Jayaraman,Bhaskar D. Kulkarni
#t2005
#cBioinformatics
#index764669
#% 
#!
  
#*DBRF-MEGN method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants.
#@Koji Kyoda,Kotaro Baba,Shuichi Onami,Hiroaki Kitano
#t2004
#cBioinformatics
#index764670
#% 
#!
  
#*Erratum.
#@
#t2005
#cBioinformatics
#index764671
#% 
#!
  
#*ARROGANT: an application to manipulate large gene collections.
#@Amit V. Kulkarni,Noelle Sevilir Williams,Yun Lian,Jonathan D. Wren,David Mittelman,Alexander Pertsemlidis,Harold R. Garner
#t2002
#cBioinformatics
#index764672
#% 
#!
  
#*MEGA2: molecular evolutionary genetics analysis software.
#@Sudhir Kumar,Koichiro Tamura,Ingrid B. Jakobsen,Masatoshi Nei
#t2001
#cBioinformatics
#index764674
#% 
#!
  
#*Discovering well-ordered folding patterns in nucleotide sequences.
#@Shu-Yun Le,Jih-H. Chen,Danielle Konings,Jacob V. Maizel
#t2003
#cBioinformatics
#index764675
#% 
#!
  
#*UniProt archive.
#@Rasko Leinonen,Federico Garcia Diez,David Binns,Wolfgang Fleischmann,Rodrigo Lopez,Rolf Apweiler
#t2004
#cBioinformatics
#index764677
#% 
#!
  
#*BugView: a browser for comparing genomes.
#@David P. Leader
#t2004
#cBioinformatics
#index764681
#% 
#!
  
#*VizRank: finding informative data projections in functional genomics by machine learning.
#@Gregor Leban,Ivan Bratko,Uros Petrovic,Tomaz Curk,Blaz Zupan
#t2005
#cBioinformatics
#index764682
#% 
#!
  
#*A fractional programming approach to efficient DNA melting temperature calculation.
#@Markus Leber,Lars Kaderali,Alexander Schönhuth,Rainer Schrader
#t2005
#cBioinformatics
#index764683
#% 
#!
  
#*COMPAM : visualization of combining pairwise alignments for multiple genomes.
#@Do-Hoon Lee,Jeong-Hyeon Choi,Mehmet M. Dalkilic,Sun Kim
#t2006
#cBioinformatics
#index764685
#% 
#!
  
#*Exploring protein fold space by secondary structure prediction using data distribution method on Grid platform.
#@Soojin Lee,Min-Kyu Cho,Jin-Won Jung,Jai-Hoon Kim,Weontae Lee
#t2004
#cBioinformatics
#index764686
#% 
#!
  
#*Multiple sequence alignment using partial order graphs.
#@Christopher Lee,Catherine Grasso,Mark F. Sharlow
#t2002
#cBioinformatics
#index764687
#% 
#!
  
#*A graph-theoretic modeling on GO space for biological interpretation of gene clusters.
#@Sung Geun Lee,Jung Uk Hur,Yang Seok Kim
#t2004
#cBioinformatics
#index764688
#% 
#!
  
#*Identification of optimal classification functions for biological sample and state discrimination from metabolic profiling data.
#@Kyongbum Lee,Daehee Hwang,Tadaaki Yokoyama,George Stephanopoulos,Gregory Stephanopoulos,Martin L. Yarmush
#t2004
#cBioinformatics
#index764689
#% 
#!
  
#*CHOISS for selection of single nucleotide polymorphism markers on interval regularity.
#@Soohyun Lee,Changwon Kang
#t2004
#cBioinformatics
#index764690
#% 
#!
  
#*PGAGENE: integrating quantitative gene-specific results from the NHLBI Programs for Genomic Applications.
#@Kyungjoon Lee,Isaac S. Kohane,Atul J. Butte
#t2003
#cBioinformatics
#index764691
#% 
#!
  
#*Automatic extension of Gene Ontology with flexible identification of candidate terms.
#@Jin-Bok Lee,Jung-jae Kim,Jong C. Park
#t2006
#cBioinformatics
#index764692
#% 
#!
  
#*Classification of Multiple Cancer Types by Multicategory Support Vector Machines Using Gene Expression Data.
#@Yoonkyung Lee,Cheol-Koo Lee
#t2003
#cBioinformatics
#index764693
#% 
#!
  
#*Modularized learning of genetic interaction networks from biological annotations and mRNA expression data.
#@Phil Hyoun Lee,Doheon Lee
#t2005
#cBioinformatics
#index764694
#% 
#!
  
#*The DynDom Database of Protein Domain Motions.
#@Richard A. Lee,Moe Razaz,Steven Hayward
#t2003
#cBioinformatics
#index764695
#% 
#!
  
#*Gene selection: a Bayesian variable selection approach.
#@Kyeong Eun Lee,Naijun Sha,Edward R. Dougherty,Marina Vannucci,Bani K. Mallick
#t2003
#cBioinformatics
#index764696
#% 
#!
  
#*Heterogeneity detector: finding heterogeneous positions in Phred/Phrap assemblies.
#@W. H. Lee,V. B. Vega
#t2004
#cBioinformatics
#index764697
#% 
#!
  
#*WebCell: a web-based environment for kinetic modeling and dynamic simulation of cellular networks.
#@Dong-Yup Lee,Choamun Yun,Ayoun Cho,Bo Kyeng Hou,Sunwon Park,Sang Yup Lee
#t2006
#cBioinformatics
#index764698
#% 
#!
  
#*MetaFluxNet: the management of metabolic reaction information and quantitative metabolic flux analysis.
#@Dong-Yup Lee,Hongsoek Yun,Sunwon Park,Sang Yup Lee
#t2003
#cBioinformatics
#index764699
#% 
#!
  
#*EDGE: extraction and analysis of differential gene expression.
#@Jeffrey T. Leek,Eva Monsen,Alan R. Dabney,John D. Storey
#t2006
#cBioinformatics
#index764701
#% 
#!
  
#*EDGE: extraction and analysis of differential gene expression.
#@Jeffrey T. Leek,Eva Monsen,Alan R. Dabney,John D. Storey
#t2006
#cBioinformatics
#index764702
#% 
#!
  
#*A reference database for circular dichroism spectroscopy covering fold and secondary structure space.
#@Jonathan G. Lees,Andrew J. Miles,Frank Wien,B. A. Wallace
#t2006
#cBioinformatics
#index764703
#% 
#!
  
#*Balancing protein similarity and gene co-expression reveals new links between genetic conservation and developmental diversity in invertebrates.
#@Céline Lefebvre,Jean-Christophe Aude,Eric Glémet,Christian Néri
#t2005
#cBioinformatics
#index764704
#% 
#!
  
#*FORRepeats: detects repeats on entire chromosomes and between genomes.
#@Arnaud Lefebvre,Thierry Lecroq,H. Dauchel,Joël Alexandre
#t2003
#cBioinformatics
#index764705
#% 
#!
  
#*Profile-based detection of microRNA precursors in animal genomes.
#@Matthieu Legendre,André Lambert,Daniel Gautheret
#t2005
#cBioinformatics
#index764708
#% 
#!
  
#*A regularized discriminative model for the prediction of protein-peptide interactions.
#@Wolfgang P. Lehrach,Dirk Husmeier,Christopher K. I. Williams
#t2006
#cBioinformatics
#index764709
#% 
#!
  
#*Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale.
#@Haiquan Li,Jinyan Li,Limsoon Wong
#t2006
#cBioinformatics
#index764710
#% 
#!
  
#*Erratum.
#@
#t2005
#cBioinformatics
#index764711
#% 
#!
  
#*The EMBL sequence version archive.
#@Rasko Leinonen,Francesco Nardone,Olalekan Oyewole,Nicole Redaschi,Peter Stoehr
#t2003
#cBioinformatics
#index764712
#% 
#!
  
#*Using a state-space model with hidden variables to infer transcription factor activities.
#@Zheng Li,Stephen M. Shaw,Matthew J. Yedwabnick,Christina Chan
#t2006
#cBioinformatics
#index764713
#% 
#!
  
#*UniSave: the UniProtKB Sequence/Annotation Version database.
#@Rasko Leinonen,Francesco Nardone,Weimin Zhu,Rolf Apweiler
#t2006
#cBioinformatics
#index764714
#% 
#!
  
#*Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology.
#@Weizhong Li,Frederic Pio,Krzysztof Pawlowski,Adam Godzik
#t2000
#cBioinformatics
#index764715
#% 
#!
  
#*Erratum.
#@
#t2005
#cBioinformatics
#index764716
#% 
#!
  
#*Comparing gene expression networks in a multi-dimensional space to extract similarities and differences between organisms.
#@Gaëlle Lelandais,Pierre Vincens,Anne Badel-Chagnon,Stéphane Vialette,Claude Jacq,Serge A. Hazout
#t2006
#cBioinformatics
#index764717
#% 
#!
  
#*Application of the GA/KNN method to SELDI proteomics data.
#@Leping Li,David M. Umbach,Paul Terry,Jack A. Taylor
#t2004
#cBioinformatics
#index764718
#% 
#!
  
#*Search for structural similarity in proteins.
#@Jacek Leluk,Leszek Konieczny,Irena Roterman
#t2003
#cBioinformatics
#index764719
#% 
#!
  
#*Development of an integrated laboratory information management system for the maize mapping project.
#@Hector Sanchez-Villeda,Steven G. Schroeder,Mary L. Polacco,Michael D. McMullen,Seth A. Havermann,Georgia L. Davis,Irie Vroh-Bi,Karen C. Cone,Natasha Sharopova,Young-Sun Yim,Linda Schultz,Ngozi A. Duru,Theresa A. Musket,Kate Houchins,Zhiwei Fang,Jack M. Gardiner,Edward H. Coe
#t2003
#cBioinformatics
#index764720
#% 
#!
  
#*Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns .
#@Jinyan Li,Limsoon Wong
#t2002
#cBioinformatics
#index764722
#% 
#!
  
#*Essentiality and damage in metabolic networks.
#@Ney Lemke,Fabiana Herédia,Cláudia K. Barcellos,Adriana Neves dos Reis,José C. M. Mombach
#t2004
#cBioinformatics
#index764723
#% 
#!
  
#*Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/KNN method.
#@Leping Li,Clarice R. Weinberg,Thomas A. Darden,Lee G. Pedersen
#t2001
#cBioinformatics
#index764724
#% 
#!
  
#*Theoretical and experimental comparisons of gene expression indexes for oligonucleotide arrays.
#@William J. Lemon,Jeffrey J. T. Palatini,Ralf Krahe,Fred A. Wright
#t2002
#cBioinformatics
#index764725
#% 
#!
  
#*NdPASA: a pairwise sequence alignment server for distantly related proteins.
#@Wei Li,Junwen Wang,Jin-An Feng
#t2005
#cBioinformatics
#index764726
#% 
#!
  
#*Classification using functional data analysis for temporal gene expression data.
#@Xiaoyan Leng,Hans-Georg Müller
#t2006
#cBioinformatics
#index764727
#% 
#!
  
#*Inferring causal relationships among intermediate phenotypes and biomarkers: a case study of rheumatoid arthritis.
#@Wentian Li,Mingyi Wang,Patricia Irigoyen,Peter K. Gregersen
#t2006
#cBioinformatics
#index764728
#% 
#!
  
#*Editorial. The Seventh International Conference on Intelligent Systems for Molecular Biology (ISMB'99).
#@Thomas Lengauer
#t1999
#cBioinformatics
#index764729
#% 
#!
  
#*Constructing biological networks through combined literature mining and microarray analysis: a LMMA approach.
#@Shao Li,Lijiang Wu,Zhongqi Zhang
#t2006
#cBioinformatics
#index764730
#% 
#!
  
#*TFBS: Computational framework for transcription factor binding site analysis.
#@Boris Lenhard,Wyeth W. Wasserman
#t2002
#cBioinformatics
#index764731
#% 
#!
  
#*Procom: a web-based tool to compare multiple eukaryotic proteomes.
#@Jin Billy Li,Miao Zhang,Susan K. Dutcher,Gary D. Stormo
#t2005
#cBioinformatics
#index764732
#% 
#!
  
#*An exact solution for the segment-to-segment multiple sequence alignment problem.
#@Hans-Peter Lenhof,Burkhard Morgenstern,Knut Reinert
#t1999
#cBioinformatics
#index764733
#% 
#!
  
#*A comparative study of feature selection and multiclass classification methods for tissue classification based on gene expression.
#@Tao Li,Chengliang Zhang,Mitsunori Ogihara
#t2004
#cBioinformatics
#index764734
#% 
#!
  
#*Finding relevant references to genes and proteins in Medline using a Bayesian approach.
#@Julie E. Leonard,Jeffrey B. Colombe,Joshua L. Levy
#t2002
#cBioinformatics
#index764735
#% 
#!
  
#*A parsimonious tree-grow method for haplotype inference.
#@Zhen-Ping Li,Wenfeng Zhou,Xiang-Sun Zhang,Luonan Chen
#t2005
#cBioinformatics
#index764736
#% 
#!
  
#*A generalization of the PST algorithm: modeling the sparse nature of protein sequences.
#@Florencia G. Leonardi
#t2006
#cBioinformatics
#index764737
#% 
#!
  
#*Evidence for the regulation of alternative splicing via complementary DNA sequence repeats.
#@Yun Lian,Harold R. Garner
#t2005
#cBioinformatics
#index764738
#% 
#!
  
#*Predicting protein functions with message passing algorithms.
#@Michele Leone,Andrea Pagnani
#t2005
#cBioinformatics
#index764739
#% 
#!
  
#*Differential and trajectory methods for time course gene expression data.
#@Yulan Liang,Bamidele Tayo,Xueya Cai,Arpad Kelemen
#t2005
#cBioinformatics
#index764740
#% 
#!
  
#*NetAlign: a web-based tool for comparison of protein interaction networks.
#@Zhi Liang,Meng Xu,Maikun Teng,Liwen Niu
#t2006
#cBioinformatics
#index764742
#% 
#!
  
#*ADAPT: a database of affymetrix probesets and transcripts.
#@Hui Sun Leong,Tim Yates,Claire L. Wilson,Crispin J. Miller
#t2005
#cBioinformatics
#index764743
#% 
#!
  
#*The UniMarker (UM) method for synteny mapping of large genomes.
#@Ben-Yang Liao,Yu-Jung Chang,Jan-Ming Ho,Ming-Jing Hwang
#t2004
#cBioinformatics
#index764744
#% 
#!
  
#*A periodicity analysis of transmembrane helices.
#@Hadas Leonov,Isaiah T. Arkin
#t2005
#cBioinformatics
#index764745
#% 
#!
  
#*TERMINUS - Telomeric End-Read Mining IN Unassembled Sequences.
#@Weixi Li,Cathryn J. Rehmeyer,Chuck Staben,Mark L. Farman
#t2005
#cBioinformatics
#index764746
#% 
#!
  
#*Erratum.
#@
#t2005
#cBioinformatics
#index764747
#% 
#!
  
#*Adaptive algorithm of automated annotation.
#@Andrey M. Leontovich,L. I. Brodsky,V. A. Drachev,V. K. Nikolaev
#t2002
#cBioinformatics
#index764748
#% 
#!
  
#*MAD: a suite of tools for microarray data management and processing.
#@Birong Liao,Walker Hale,Charles B. Epstein,Ronald A. Butow,Harold R. Garner
#t2000
#cBioinformatics
#index764749
#% 
#!
  
#*MaxBench: evaluation of sequence and structure comparison methods.
#@Raphaël Leplae,Tim J. P. Hubbard
#t2002
#cBioinformatics
#index764750
#% 
#!
  
#*A mixture model for estimating the local false discovery rate in DNA microarray analysis.
#@J. G. Liao,Yong Lin,Zachariah E. Selvanayagam,Weichung Joe Shih
#t2004
#cBioinformatics
#index764751
#% 
#!
  
#*Genes@Work: an efficient algorithm for pattern discovery and multivariate feature selection in gene expression data.
#@Jorge Lepre,John Jeremy Rice,Yuhai Tu,Gustavo Stolovitzky
#t2004
#cBioinformatics
#index764752
#% 
#!
  
#*Comparison of computational methods for the identification of cell cycle-regulated genes.
#@Ulrik de Lichtenberg,Lars Juhl Jensen,Anders Fausbøll,Thomas Skøt Jensen,Peer Bork,Søren Brunak
#t2005
#cBioinformatics
#index764753
#% 
#!
  
#*Issues in developing integrated genomic databases and application to the human X chromosome.
#@Ulf Leser,Hans Lehrach,Hugues Roest Crollius
#t1998
#cBioinformatics
#index764754
#% 
#!
  
#*Mismatch string kernels for discriminative protein classification.
#@Christina S. Leslie,Eleazar Eskin,Adiel Cohen,Jason Weston,William Stafford Noble
#t2004
#cBioinformatics
#index764756
#% 
#!
  
#*Finding pathogenicity islands and gene transfer events in genome data.
#@Pietro Liò,Marina Vannucci
#t2000
#cBioinformatics
#index764757
#% 
#!
  
#*Structural exon database, SEDB, mapping exon boundaries on multiple protein structures.
#@Chesley M. Leslin,Alexej Abyzov,Valentin A. Ilyin
#t2004
#cBioinformatics
#index764758
#% 
#!
  
#*??Harvester??: a fast meta search engine of human protein resources.
#@Urban Liebel,Bjoern Kindler,Rainer Pepperkok
#t2004
#cBioinformatics
#index764759
#% 
#!
  
#*DeFries-Fulker multiple regression analysis of sibship QTL data: a SAS®macro.
#@J. L. Lessem,Stacey S. Cherny
#t2001
#cBioinformatics
#index764760
#% 
#!
  
#*Linear modes of gene expression determined by independent component analysis.
#@Wolfram Liebermeister
#t2002
#cBioinformatics
#index764761
#% 
#!
  
#*GeneCruiser: a web service for the annotation of microarray data.
#@Ted Liefeld,Michael Reich,Joshua Gould,Peili Zhang,Pablo Tamayo,Jill P. Mesirov
#t2005
#cBioinformatics
#index764763
#% 
#!
  
#*A Web interface generator for molecular biology programs in Unix.
#@Catherine Letondal
#t2001
#cBioinformatics
#index764764
#% 
#!
  
#*PAGE: phase-shifted analysis of gene expression.
#@Elo Leung,Pierre R. Bushel
#t2006
#cBioinformatics
#index764766
#% 
#!
  
#*Comparative genomics study of inverted repeats in bacteria.
#@Fabrizio Lillo,Salvatore Basile,Rosario N. Mantegna
#t2002
#cBioinformatics
#index764767
#% 
#!
  
#*Basic Gene Grammars and DNA-ChartParser for language processing of Escherichia coli promoter DNA sequences.
#@Siu-wai Leung,Chris Mellish,Dave Robertson
#t2001
#cBioinformatics
#index764768
#% 
#!
  
#*WebPHYLIP: a web interface to PHYLIP.
#@Allison Lim,Louxin Zhang
#t1999
#cBioinformatics
#index764769
#% 
#!
  
#*Chimera: construction of chimeric sequences for phylogenetic analysis.
#@Jack A. M. Leunissen
#t2003
#cBioinformatics
#index764770
#% 
#!
  
#*hp-DPI: Helicobacter pylori Database of Protein Interactomes-embracing experimental and inferred interactions.
#@Chung-Yen Lin,Chia-Ling Chen,Chi-Shiang Cho,Li-Ming Wang,Chia-Ming Chang,Pao-Yang Chen,Chen-Zen Lo,Chao A. Hsiung
#t2005
#cBioinformatics
#index764771
#% 
#!
  
#*Gene specific siRNA selector.
#@Natasha Levenkova,Qingjuan Gu,John J. Rux
#t2004
#cBioinformatics
#index764772
#% 
#!
  
#*HYPROSP II-A knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence.
#@Hsin-Nan Lin,Jia-Ming Chang,Kuen-Pin Wu,Ting-Yi Sung,Wen-Lian Hsu
#t2005
#cBioinformatics
#index764773
#% 
#!
  
#*VHMPT: a graphical viewer and editor for helical membrane protein topologies.
#@W. J. Lin,M. J. Hwang
#t1998
#cBioinformatics
#index764775
#% 
#!
  
#*A model-based scan statistic for identifying extreme chromosomal regions of gene expression in human tumors.
#@Albert M. Levin,Debashis Ghosh,Kathleen R. Cho,Sharon L. R. Kardia
#t2005
#cBioinformatics
#index764776
#% 
#!
  
#*MAVG: locating non-overlapping maximum average segments in a given sequence.
#@Yaw-Ling Lin,Xiaoqiu Huang,Tao Jiang,Kun-Mao Chao
#t2003
#cBioinformatics
#index764777
#% 
#!
  
#*POLINA: detection and evaluation of single amino acid substitutions in protein superfamilies.
#@S. Levin,B. H. Satir
#t1998
#cBioinformatics
#index764778
#% 
#!
  
#*MedlineR: an open source library in R for Medline literature data mining.
#@Simon M. Lin,Patrick McConnell,Kimberly F. Johnson,Jennifer Shoemaker
#t2004
#cBioinformatics
#index764779
#% 
#!
  
#*Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis.
#@Victor G. Levitsky,Olga A. Podkolodnaya,Nikolay A. Kolchanov,Nikolay L. Podkolodny
#t2001
#cBioinformatics
#index764780
#% 
#!
  
#*TruMatch - a BLAST post-processor that identifies bona fide sequence matches to genome assemblies.
#@Weixi Li,Cathryn J. Rehmeyer,Chuck Staben,Mark L. Farman
#t2005
#cBioinformatics
#index764781
#% 
#!
  
#*Erratum.
#@
#t2005
#cBioinformatics
#index764782
#% 
#!
  
#*Nucleosome formation potential of exons, introns, and Alu repeats.
#@Victor G. Levitsky,Olga A. Podkolodnaya,Nikolay A. Kolchanov,Nikolay L. Podkolodny
#t2001
#cBioinformatics
#index764783
#% 
#!
  
#*GABI-Kat SimpleSearch: A Flanking Sequence Tag (FST) Database for the Identification of T-DNA Insertion Mutants in Arabidopsis Thaliana.
#@Yong Li,Mario G. Rosso,Nicolai Strizhov,Prisca Viehoever,Bernd Weisshaar
#t2003
#cBioinformatics
#index764784
#% 
#!
  
#*Erratum.
#@
#t2005
#cBioinformatics
#index764785
#% 
#!
  
#*Nucleosomal DNA property database.
#@Victor G. Levitsky,Mikhail P. Ponomarenko,Julia V. Ponomarenko,Anatoly S. Frolov,Nikolay A. Kolchanov
#t1999
#cBioinformatics
#index764786
#% 
#!
  
#*Threading Using Neural nEtwork (TUNE): the measure of protein sequence-structure compatibility.
#@Kuang Lin,Alex C. W. May,William R. Taylor
#t2002
#cBioinformatics
#index764787
#% 
#!
  
#*Xlandscape: the graphical display of word frequencies in sequences.
#@Samuel Levy,L. Compagnoni,Eugene W. Myers,Gary D. Stormo
#t1998
#cBioinformatics
#index764788
#% 
#!
  
#*A simple and fast secondary structure prediction method using hidden neural networks.
#@Kuang Lin,Victor A. Simossis,William R. Taylor,Jaap Heringa
#t2005
#cBioinformatics
#index764789
#% 
#!
  
#*Enrichment of regulatory signals in conserved non-coding genomic sequence.
#@Samuel Levy,Sridhar Hannenhalli,Christopher T. Workman
#t2001
#cBioinformatics
#index764790
#% 
#!
  
#*dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data.
#@Ming Lin,Lee-Jen Wei,William R. Sellers,Marshall Lieberfarb,Wing Hung Wong,Cheng Li
#t2004
#cBioinformatics
#index764791
#% 
#!
  
#*Quantitative DNA methylation analysis based on four-dye trace data from direct sequencing of PCR amplificates.
#@Jörn Lewin,Armin O. Schmitt,Péter Adorján,Thomas Hildmann,Christian Piepenbrock
#t2004
#cBioinformatics
#index764792
#% 
#!
  
#*An initial strategy for comparing proteins at the domain architecture level.
#@Kui Lin,Lei Zhu,Da-Yong Zhang
#t2006
#cBioinformatics
#index764793
#% 
#!
  
#*NCL: a C++ class library for interpreting data files in NEXUS format.
#@Paul O. Lewis
#t2003
#cBioinformatics
#index764794
#% 
#!
  
#*Virtual PCR.
#@Matej Lexa,J. Horak,B. Brzobohaty
#t2001
#cBioinformatics
#index764796
#% 
#!
  
#*CloneIt: finding cloning strategies, in-frame deletions and frameshifts.
#@P. Lindenbaum
#t1998
#cBioinformatics
#index764797
#% 
#!
  
#*PRIMEX: rapid identification of oligonucleotide matches in whole genomes.
#@Matej Lexa,Giorgio Valle
#t2003
#cBioinformatics
#index764798
#% 
#!
  
#*The 'subsequent artificial neural network' (SANN) approach might bring more classificatory power to ANN-based DNA microarray analyses.
#@Roland Linder,Dawn Dew,Holger Sudhoff,Dirk Theegarten,Klaus Remberger,Siegfried J. Pöppl,Mathias Wagner II
#t2004
#cBioinformatics
#index764799
#% 
#!
  
#*An information-based sequence distance and its application to whole mitochondrial genome phylogeny.
#@Ming Li,Jonathan H. Badger,Xin Chen,Sam Kwong,Paul E. Kearney,Haoyong Zhang
#t2001
#cBioinformatics
#index764800
#% 
#!
  
#*easyLINKAGE: a PERL script for easy and automated two-/multi-point linkage analyses.
#@Tom H. Lindner,Katrin Hoffmann
#t2005
#cBioinformatics
#index764801
#% 
#!
  
#*A comparative analysis of HGSC and Celera human genome assemblies and gene sets.
#@Shuyu Li,Gene Cutler,Jane Jijun Liu,Timothy Hoey,Liangbiao Chen,Peter G. Schultz,Jia yu Liao,Xuefeng Bruce Ling
#t2003
#cBioinformatics
#index764802
#% 
#!
  
#*ARIA: automated NOE assignment and NMR structure calculation.
#@Jens P. Linge,Michael Habeck,Wolfgang Rieping,Michael Nilges
#t2003
#cBioinformatics
#index764803
#% 
#!
  
#*Donuts, scratches and blanks: robust model-based segmentation of microarray images.
#@Qunhua Li,Chris Fraley,Roger Eugene Bumgarner,Ka Yee Yeung,Adrian E. Raftery
#t2005
#cBioinformatics
#index764804
#% 
#!
  
#*CGH-Explorer: a program for analysis of array-CGH data.
#@Ole Christian Lingjærde,Lars O. Baumbusch,Knut Liestøl,Ingrid K. Glad,Anne-Lise Børresen-Dale
#t2005
#cBioinformatics
#index764805
#% 
#!
  
#*pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry.
#@Dequan Li,Yan Fu,Ruixiang Sun,Charles X. Ling,Yonggang Wei,Hu Zhou,Rong Zeng,Qiang Yang,Simin He,Wen Gao
#t2005
#cBioinformatics
#index764806
#% 
#!
  
#*PASSML: combining evolutionary inference and protein secondary structure prediction.
#@Pietro Liò,N. Goldman,Jeffrey L. Thorne,David T. Jones
#t1998
#cBioinformatics
#index764807
#% 
#!
  
#*SamCluster: An Integrated Scheme for Automatic Discovery of Sample Classes Using Gene Expression Profile.
#@Li Wuju,Ming Fan,Momiao Xiong
#t2003
#cBioinformatics
#index764808
#% 
#!
  
#*Wavelet change-point prediction of transmembrane proteins.
#@Pietro Liò,Marina Vannucci
#t2000
#cBioinformatics
#index764809
#% 
#!
  
#*Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.
#@Weizhong Li,Adam Godzik
#t2006
#cBioinformatics
#index764810
#% 
#!
  
#*Bioinformatics in Australia.
#@Timothy G. Littlejohn
#t2000
#cBioinformatics
#index764811
#% 
#!
  
#*Predicting allergenic proteins using wavelet transform.
#@Kuo-Bin Li,Praveen Issac,Arun Krishnan
#t2004
#cBioinformatics
#index764812
#% 
#!
  
#*Conformational model for binding site recognition by the E.coli MetJ transcription factor.
#@Rongxiang Liu,Thomas W. Blackwell,David J. States
#t2001
#cBioinformatics
#index764813
#% 
#!
  
#*Clustering of highly homologous sequences to reduce the size of large protein databases.
#@Weizhong Li,Lukasz Jaroszewski,Adam Godzik
#t2001
#cBioinformatics
#index764814
#% 
#!
  
#*Comparison of probabilistic combination methods for protein secondary structure prediction.
#@Yan Liu,Jaime G. Carbonell,Judith Klein-Seetharaman,Vanathi Gopalakrishnan
#t2004
#cBioinformatics
#index764815
#% 
#!
  
#*Tolerating some redundancy significantly speeds up clustering of large protein databases.
#@Weizhong Li,Lukasz Jaroszewski,Adam Godzik
#t2002
#cBioinformatics
#index764816
#% 
#!
  
#*Multiclass cancer classification and biomarker discovery using GA-based algorithms.
#@Jane Jijun Liu,Gene Cutler,Wuxiong Li,Zheng Pan,Sihua Peng,Timothy Hoey,Liangbiao Chen,Xuefeng Bruce Ling
#t2005
#cBioinformatics
#index764817
#% 
#!
  
#*Pseudo-periodic partitions of biological sequences.
#@Lugang Li,Renchao Jin,Poh-Lin Kok,Honghui Wan
#t2004
#cBioinformatics
#index764818
#% 
#!
  
#*Algorithms for large-scale genotyping microarrays.
#@Wei-Min Liu,Xiaojun Di,Geoffrey Yang,Hajime Matsuzaki,Jing Huang,Rui Mei,Thomas B. Ryder,Teresa A. Webster,Shoulian Dong,Guoying Liu,Keith W. Jones,Giulia C. Kennedy,David Kulp
#t2003
#cBioinformatics
#index764819
#% 
#!
  
#*Boosting proportional hazards models using smoothing splines, with applications to high-dimensional microarray data.
#@Hongzhe Li,Yihui Luan
#t2005
#cBioinformatics
#index764820
#% 
#!
  
#*Fast parsers for Entrez Gene.
#@Mingyi Liu,Andrei Grigoriev
#t2005
#cBioinformatics
#index764821
#% 
#!
  
#*PhD: a web database application for phenotype data management.
#@Jin-Long Li,Miao-Xin Li,H.-Y. Deng,P. E. Duffy,Hong-Wen Deng
#t2005
#cBioinformatics
#index764822
#% 
#!
  
#*Multi-species comparative mapping in silico using the COMPASS strategy.
#@Lei Liu,George Gong,Yong Liu,Shreedhar Natarajan,Denis M. Larkin,Annelie Everts-van der Wind,Mark Rebeiz,Jonathan E. Beever
#t2004
#cBioinformatics
#index764823
#% 
#!
  
#*Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (ALL) patients.
#@Jinyan Li,Huiqing Liu,James R. Downing,Allen Eng-Juh Yeoh,Limsoon Wong
#t2003
#cBioinformatics
#index764824
#% 
#!
  
#*DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences.
#@Huiqing Liu,Hao Han,Jinyan Li,Limsoon Wong
#t2005
#cBioinformatics
#index764825
#% 
#!
  
#*JADE: a distributed Java application for deleterious genomic mutation (DGM) estimation.
#@Jin-Long Li,Miao-Xin Li,Yan-Fang Guo,H.-Y. Deng,Hong-Wen Deng
#t2006
#cBioinformatics
#index764826
#% 
#!
  
#*BioThesaurus: a web-based thesaurus of protein and gene names.
#@Hongfang Liu,Zhang-Zhi Hu,Jian Zhang,Cathy H. Wu
#t2006
#cBioinformatics
#index764827
#% 
#!
  
#*A framework of integrating gene relations from heterogeneous data sources: an experiment on .
#@Jiexun Li,Xin Li,Hua Su,Hsinchun Chen,David W. Galbraith
#t2006
#cBioinformatics
#index764828
#% 
#!
  
#*FigSearch: a figure legend indexing and classification system.
#@Fang Liu,Tor-Kristian Jenssen,Vegard Nygaard,John Sack,Eivind Hovig
#t2004
#cBioinformatics
#index764829
#% 
#!
  
#*Bayesian inference on biopolymer models.
#@Jun S. Liu,Charles E. Lawrence
#t1999
#cBioinformatics
#index764830
#% 
#!
  
#*Use of extreme patient samples for outcome prediction from gene expression data.
#@Huiqing Liu,Jinyan Li,Limsoon Wong
#t2005
#cBioinformatics
#index764831
#% 
#!
  
#*Inferring protein-protein interactions through high-throughput interaction data from diverse organisms.
#@Yin Liu,Nianjun Liu,Hongyu Zhao
#t2005
#cBioinformatics
#index764832
#% 
#!
  
#*Modes and clustering for time-warped gene expression profile data.
#@Xueli Liu,Hans-Georg Müller
#t2003
#cBioinformatics
#index764833
#% 
#!
  
#*PowerMarker: an integrated analysis environment for genetic marker analysis.
#@Kejun Liu,Spencer V. Muse
#t2005
#cBioinformatics
#index764834
#% 
#!
  
#*Distance-based clustering of CGH data.
#@Jun Liu,Jaaved Mohammed,James Carter,Sanjay Ranka,Tamer Kahveci,Michael Baudis
#t2006
#cBioinformatics
#index764835
#% 
#!
  
#*Analysis of high density expression microarrays with signed-rank call algorithms.
#@Wei-Min Liu,Rui Mei,Xiaojun Di,Thomas B. Ryder,Earl Hubbell,S. Dee,Teresa A. Webster,C. A. Harrington,Ming-Hsiu Ho,J. Baid,S. P. Smeekens
#t2002
#cBioinformatics
#index764836
#% 
#!
  
#*A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips.
#@Xuejun Liu,Marta Milo,Neil D. Lawrence,Magnus Rattray
#t2005
#cBioinformatics
#index764837
#% 
#!
  
#*Probe-level measurement error improves accuracy in detecting differential gene expression.
#@Xuejun Liu,Marta Milo,Neil D. Lawrence,Magnus Rattray
#t2006
#cBioinformatics
#index764838
#% 
#!
  
#*Target space for structural genomics revisited.
#@Jinfeng Liu,Burkhard Rost
#t2002
#cBioinformatics
#index764840
#% 
#!
  
#*Sensitivity, principal component and flux analysis applied to signal transduction: the case of epidermal growth factor mediated signaling.
#@Gang Liu,Mark T. Swihart,Sriram Neelamegham
#t2005
#cBioinformatics
#index764841
#% 
#!
  
#*Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset.
#@Xiangdong Liu,Siva Sivaganesan,Ka Yee Yeung,Junhai Guo,Roger Eugene Bumgarner,Mario Medvedovic
#t2006
#cBioinformatics
#index764842
#% 
#!
  
#*EC_oligos: automated and whole-genome primer design for exons within one or between two genomes.
#@Shaolin Liu,Nicholas A. Tinker,Stephen J. Molnar,Diane E. Mather
#t2004
#cBioinformatics
#index764843
#% 
#!
  
#*A two-stage normalization method for partially degraded mRNA microarray data.
#@Li-yu D. Liu,Naisyin Wang,Joanne R. Lupton,Nancy D. Turner,Robert S. Chapkin,Laurie A. Davidson
#t2005
#cBioinformatics
#index764844
#% 
#!
  
#*A geometric approach to determine association and coherence of the activation times of cell-cycling genes under differing experimental conditions.
#@Delong Liu,Clarice R. Weinberg,Shyamal D. Peddada
#t2004
#cBioinformatics
#index764845
#% 
#!
  
#*Exon-domain correlation and its corollaries.
#@Mingyi Liu,Shaoping Wu,Heiko Walch,Andrei Grigoriev
#t2005
#cBioinformatics
#index764846
#% 
#!
  
#*SCA db: spinocerebellar ataxia candidate gene database.
#@Y.-F. Liu,U.-C. Yang
#t2004
#cBioinformatics
#index764847
#% 
#!
  
#*MENDB: a database of polymorphic loci from natural populations.
#@K. Livingstone,L. Rieseberg
#t2003
#cBioinformatics
#index764850
#% 
#!
  
#*Simultaneous search for multiple QTL using the global optimization algorithm DIRECT.
#@Kajsa Ljungberg,Sverker Holmgren,Örjan Carlborg
#t2004
#cBioinformatics
#index764851
#% 
#!
  
#*DICHROWEB: an interactive website for the analysis of protein secondary structure from circular dichroism spectra.
#@A. Lobley,Lee Whitmore,B. A. Wallace
#t2002
#cBioinformatics
#index764852
#% 
#!
  
#*EMBL-Align: a new public nucleotide and amino acid multiple sequence alignment database.
#@Vincent Lombard,E. B. Camon,Helen E. Parkinson,Pascal Hingamp,Guenter Stoesser,Nicole Redaschi
#t2002
#cBioinformatics
#index764853
#% 
#!
  
#*OPM: Orientations of Proteins in Membranes database.
#@Mikhail A. Lomize,Andrei L. Lomize,Irina D. Pogozheva,Henry I. Mosberg
#t2006
#cBioinformatics
#index764854
#% 
#!
  
#*Highly consistent patterns for inherited human diseases at the molecular level.
#@Núria López-Bigas,Benjamin J. Blencowe,Christos A. Ouzounis
#t2006
#cBioinformatics
#index764855
#% 
#!
  
#*The European Bioinformatics Institute web site: a new view.
#@Rodrigo Lopez,Stephen Robinson,Asif Kibria,Nicola Harte,Gulam Patel,Rob Harper,Emmanuel Quevillon,Ville Silventoinen,Kimmo Kallio,Petteri Jokinen
#t2003
#cBioinformatics
#index764857
#% 
#!
  
#*CINEMA-MX: a modular multiple alignment editor.
#@Phillip W. Lord,J. N. Selley,Terri K. Attwood
#t2002
#cBioinformatics
#index764858
#% 
#!
  
#*Investigating Semantic Similarity Measures Across the Gene Ontology: The Relationship Between Sequence and Annotation.
#@Phillip W. Lord,Robert D. Stevens,Andy Brass,Carole A. Goble
#t2003
#cBioinformatics
#index764859
#% 
#!
  
#*Synthetic Biology: challenges ahead.
#@Victor de Lorenzo,Luis Serrano,Alfonso Valencia
#t2006
#cBioinformatics
#index764861
#% 
#!
  
#*Molecular decomposition of complex clinical phenotypes using biologically structured analysis of microarray data.
#@Claudio Lottaz,Rainer Spang
#t2005
#cBioinformatics
#index764863
#% 
#!
  
#*Copying nodes versus editing links: the source of the difference between genetic regulatory networks and the WWW.
#@Yoram Louzoun,Lev Muchnik,Sorin Solomon
#t2006
#cBioinformatics
#index764864
#% 
#!
  
#*A conditional density error model for the statistical analysis of microarray data.
#@Brad Love,David R. Rank,Sharron G. Penn,David A. Jenkins,Russell S. Thomas
#t2002
#cBioinformatics
#index764865
#% 
#!
  
#*SOAP, cleaning multiple alignments from unstable blocks.
#@Ari Löytynoja,Michel C. Milinkovitch
#t2001
#cBioinformatics
#index764866
#% 
#!
  
#*A hidden Markov model for progressive multiple alignment.
#@Ari Löytynoja,Michel C. Milinkovitch
#t2003
#cBioinformatics
#index764867
#% 
#!
  
#*Hotelling's multivariate profiling for detecting differential expression in microarrays.
#@Yan Lu,Peng-Yuan Liu,Peng Xiao,Hong-Wen Deng
#t2005
#cBioinformatics
#index764868
#% 
#!
  
#*Predicting subcellular localization of proteins using machine-learned classifiers.
#@Zhiyong Lu,Duane Szafron,Russell Greiner,Paul Lu,David S. Wishart,Brett Poulin,John Anvik,Cam Macdonell,Roman Eisner
#t2004
#cBioinformatics
#index764869
#% 
#!
  
#*ROBIN: a tool for genome rearrangement of block-interchanges.
#@Chin Lung Lu,Tsui Ching Wang,Ying Chih Lin,Chuan Yi Tang
#t2005
#cBioinformatics
#index764870
#% 
#!
  
#*Clustering of time-course gene expression data using a mixed-effects model with B-splines.
#@Yihui Luan,Hongzhe Li
#t2003
#cBioinformatics
#index764871
#% 
#!
  
#*Model-based methods for identifying periodically expressed genes based on time course microarray gene expression data.
#@Yihui Luan,Hongzhe Li
#t2004
#cBioinformatics
#index764872
#% 
#!
  
#*PINdb: a database of nuclear protein complexes from human and yeast.
#@Phuong-Van Luc,Paul Tempst
#t2004
#cBioinformatics
#index764873
#% 
#!
  
#*PaVESy: Pathway Visualization and Editing System.
#@Alexander Lüdemann,Daniel Weicht,Joachim Selbig,Joachim Kopka
#t2004
#cBioinformatics
#index764875
#% 
#!
  
#*Analysis of temporal gene expression profiles: clustering by simulated annealing and determining the optimal number of clusters.
#@Alexander V. Lukashin,Rainer Fuchs
#t2001
#cBioinformatics
#index764876
#% 
#!
  
#*Topology of gene expression networks as revealed by data mining and modeling.
#@Alexander V. Lukashin,Matvey E. Lukashev,Rainer Fuchs
#t2003
#cBioinformatics
#index764877
#% 
#!
  
#*Local multiple sequence alignment using dead-end elimination.
#@Alexander V. Lukashin,Joseph J. Rosa
#t1999
#cBioinformatics
#index764878
#% 
#!
  
#*A dynamically growing self-organizing tree (DGSOT) for hierarchical clustering gene expression profiles.
#@Feng Luo,Latifur Khan,Farokh B. Bastani,I-Ling Yen,Jizhong Zhou
#t2004
#cBioinformatics
#index764879
#% 
#!
  
#*A new progressive-iterative algorithm for multiple structure alignment.
#@Dmitry Lupyan,Alejandra Leo-Macias,Angel R. Ortiz
#t2005
#cBioinformatics
#index764880
#% 
#!
  
#*LOX-DB - a database on lipoxygenases.
#@Thomas Lütteke,Peter Krieg,Gerhard Fürstenberger,Claus-Wilhelm von der Lieth
#t2003
#cBioinformatics
#index764881
#% 
#!
  
#*Visualizing metabolic activity on a genome-wide scale.
#@A. C. M. Luyf,J. de Gast,Antoine H. C. van Kampen
#t2002
#cBioinformatics
#index764884
#% 
#!
  
#*Family specific rates of protein evolution.
#@Hannes Luz,Martin Vingron
#t2006
#cBioinformatics
#index764885
#% 
#!
  
#*Fast evaluation of internal loops in RNA secondary structure prediction.
#@Rune B. Lyngsø,Michael Zuker,Christian N. S. Pedersen
#t1999
#cBioinformatics
#index764886
#% 
#!
  
#*PatternHunter: faster and more sensitive homology search.
#@Bin Ma,John Tromp,Ming Li
#t2002
#cBioinformatics
#index764888
#% 
#!
  
#*FunMap: functional mapping of complex traits.
#@Chang-Xing Ma,Rongling Wu,George Casella
#t2004
#cBioinformatics
#index764889
#% 
#!
  
#*The Connectivity Structure, Giant Strong Component and Centrality of Metabolic Networks.
#@Hongwu Ma,An-Ping Zeng
#t2003
#cBioinformatics
#index764890
#% 
#!
  
#*Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph.
#@Hongwu Ma,Xue-Ming Zhao,Ying-Jin Yuan,An-Ping Zeng
#t2004
#cBioinformatics
#index764891
#% 
#!
  
#*SAWTED: Structure Assignment With Text Description-Enhanced detection of remote homologues with automated SWISS-PROT annotation comparisons.
#@Robert M. MacCallum,Lawrence A. Kelley,Michael J. E. Sternberg
#t2000
#cBioinformatics
#index764893
#% 
#!
  
#*A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data.
#@Kenzie D. MacIsaac,D. Benjamin Gordon,Lena Nekludova,Duncan T. Odom,Joerg Schreiber,David K. Gifford,Richard A. Young,Ernest Fraenkel
#t2006
#cBioinformatics
#index764894
#% 
#!
  
#*PlantSat: a specialized database for plant satellite repeats.
#@Jirí Macas,Tibor Mészáros,Marcela Nouzová
#t2002
#cBioinformatics
#index764895
#% 
#!
  
#*A model system for studying the integration of molecular biology databases.
#@John Macauley,Huajun Wang,Nathan Goodman
#t1998
#cBioinformatics
#index764896
#% 
#!
  
#*The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks.
#@Rainer Machné,Andrew Finney,Stefan Müller,James Lu,Stefanie Widder,Christoph Flamm
#t2006
#cBioinformatics
#index764897
#% 
#!
  
#*Digital extractor: analysis of digital differential display output.
#@Stephen F. Madden,Barry O'Donovan,Simon J. Furney,Hugh R. Brady,Guenole C. M. Silvestre,Peter P. Doran
#t2003
#cBioinformatics
#index764898
#% 
#!
  
#*: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks.
#@Steven Maere,Karel Heymans,Martin Kuiper
#t2005
#cBioinformatics
#index764899
#% 
#!
  
#*Intrinsically disordered C-terminal segments of voltage-activated potassium channels: a possible fishing rod-like mechanism for channel binding to scaffold proteins.
#@Elhanan Magidovich,Sarel J. Fleishman,Ofer Yifrach
#t2006
#cBioinformatics
#index764900
#% 
#!
  
#*Reconstructing the Temporal Ordering of Biological Samples Using Microarray Data.
#@Paul M. Magwene,Paul Lizardi,Junhyong Kim
#t2003
#cBioinformatics
#index764901
#% 
#!
  
#*Transcription factor binding site identification using the self-organizing map.
#@Shaun Mahony,David Hendrix,Aaron Golden,Terry J. Smith,Daniel S. Rokhsar
#t2005
#cBioinformatics
#index764902
#% 
#!
  
#*QDist-quartet distance between evolutionary trees.
#@Thomas Mailund,Christian N. S. Pedersen
#t2004
#cBioinformatics
#index764903
#% 
#!
  
#*QuickJoin - fast neighbour-joining tree reconstruction.
#@Thomas Mailund,Christian N. S. Pedersen
#t2004
#cBioinformatics
#index764904
#% 
#!
  
#*AmpliBASE MT: a Mycobacterium tuberculosis diversity knowledgebase.
#@Ahmed A. Majeed,Niyaz Ahmed,K. Rajender Rao,S. Ghousunnissa,Farhana Kauser,Buddhaditta Bose,Hampapathalu A. Nagarajaram,V. M. Katoch,Debby V. Cousins,Leonardo A. Sechi,Robert H. Gilman,Seyed E. Hasnain
#t2004
#cBioinformatics
#index764905
#% 
#!
  
#*TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.
#@William H. Majoros,Mihaela Pertea,Steven Salzberg
#t2004
#cBioinformatics
#index764907
#% 
#!
  
#*Efficient implementation of a generalized pair hidden Markov model for comparative gene finding.
#@William H. Majoros,Mihaela Pertea,Sihaela Salzberg
#t2005
#cBioinformatics
#index764908
#% 
#!
  
#*Identification of key concepts in biomedical literature using a modified Markov heuristic.
#@W. H. Majoros,G. M. Subramanian,M. D. Yandell
#t2003
#cBioinformatics
#index764909
#% 
#!
  
#*GeneMachine: gene prediction and sequence annotation.
#@Izabela Makalowska,Joseph F. Ryan,Andreas D. Baxevanis
#t2001
#cBioinformatics
#index764910
#% 
#!
  
#*T-REX: reconstructing and visualizing phylogenetic trees and reticulation networks.
#@Vladimir Makarenkov
#t2001
#cBioinformatics
#index764911
#% 
#!
  
#*HTS-Corrector: software for the statistical analysis and correction of experimental high-throughput screening data.
#@Vladimir Makarenkov,Dmytro Kevorkov,Pablo Zentilli,Andrei V. Gagarin,Nathalie Malo,Robert Nadon
#t2006
#cBioinformatics
#index764912
#% 
#!
  
#*A weighted least-squares approach for inferring phylogenies from incomplete distance matrices.
#@Vladimir Makarenkov,François-Joseph Lapointe
#t2004
#cBioinformatics
#index764913
#% 
#!
  
#*Cyanobacterial response regulator PatA contains a conserved N-terminal domain (PATAN) with an alpha-helical insertion.
#@Kira S. Makarova,Eugene V. Koonin,Robert Haselkorn,Michael Y. Galperin
#t2006
#cBioinformatics
#index764914
#% 
#!
  
#*Estimating the diversity of peptide populations from limited sequence data.
#@Lee Makowski,Alexei Soares
#t2003
#cBioinformatics
#index764917
#% 
#!
  
#*Fast Sequence Clustering Using A Suffix Array Algorithm.
#@Ketil Malde,Eivind Coward,Inge Jonassen
#t2003
#cBioinformatics
#index764921
#% 
#!
  
#*A graph based algorithm for generating EST consensus sequences.
#@Ketil Malde,Eivind Coward,Inge Jonassen
#t2005
#cBioinformatics
#index764922
#% 
#!
  
#*Combination of text-mining algorithms increases the performance.
#@Rainer Malik,Lude Franke,Arno Siebes
#t2006
#cBioinformatics
#index764923
#% 
#!
  
#*An NMR assignment module implemented in the Gifa NMR processing program.
#@Therese E. Malliavin,Jean-Luc Pons,Marc-André Delsuc
#t1998
#cBioinformatics
#index764924
#% 
#!
  
#*Predicting class II MHC/peptide multi-level binding with an iterative stepwise discriminant analysis meta-algorithm.
#@R. R. Mallios
#t2001
#cBioinformatics
#index764925
#% 
#!
  
#*Class II MHC quantitative binding motifs derived from a large molecular database with a versatile iterative stepwise discriminant analysis meta- algorithm.
#@R. R. Mallios
#t1999
#cBioinformatics
#index764927
#% 
#!
  
#*Detecting potential labeling errors in microarrays by data perturbation.
#@Andrea Malossini,Enrico Blanzieri,Raymond T. Ng
#t2006
#cBioinformatics
#index764928
#% 
#!
  
#*The bio-objects project. Part I: the object data model core elements.
#@S. Z. Maltchenko
#t1998
#cBioinformatics
#index764929
#% 
#!
  
#*POWER_SAGE: comparing statistical tests for SAGE experiments.
#@Michael Z. Man,Xuning Wang,Yixin Wang
#t2000
#cBioinformatics
#index764932
#% 
#!
  
#*STING Contacts: a web-based application for identification and analysis of amino acid contacts within protein structure and across protein interfaces.
#@Adauto L. Mancini,Roberto H. Higa,Adilton G. Oliveira,Fabiana Dominiquini,Paula R. Kuser,Michel E. B. Yamagishi,Roberto C. Togawa,Goran Neshich
#t2004
#cBioinformatics
#index764933
#% 
#!
  
#*PedNavigator: a pedigree drawing servlet for large and inbred populations.
#@Gianmaria Mancosu,Giuseppe Ledda,Paola M. Melis
#t2003
#cBioinformatics
#index764935
#% 
#!
  
#*RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies.
#@Elisabetta Manduchi,Gregory R. Grant,H. He,Junmin Liu,Matthew D. Mailman,A. D. Pizarro,Patricia L. Whetzel,Christian J. Stoeckert Jr.
#t2004
#cBioinformatics
#index764940
#% 
#!
  
#*Generation of patterns from gene expression data by assigning confidence to differentially expressed genes.
#@Elisabetta Manduchi,Gregory R. Grant,Steven E. McKenzie,G. Christian Overton,Saul Surrey,Christian J. Stoeckert Jr.
#t2000
#cBioinformatics
#index764941
#% 
#!
  
#*An extensive list of genes that produce alternative transcripts in the mouse.
#@M. E. Mangan,K. S. Frazer
#t1999
#cBioinformatics
#index764942
#% 
#!
  
#*Mathematica packages for simulation of experimental genetics.
#@Kenneth F. Manly
#t2000
#cBioinformatics
#index764943
#% 
#!
  
#*Long-range control of expression in yeast.
#@Heikki Mannila,Anne Patrikainen,Jouni K. Seppänen,Juha Kere
#t2002
#cBioinformatics
#index764944
#% 
#!
  
#*The Global Error Assessment (GEA) model for the selection of differentially expressed genes in microarray data.
#@Robert Mansourian,David M. Mutch,Nicolas Antille,Jerome Aubert,Paul Fogel,Jean-Marc Le Goff,Julie Moulin,Anton Petrov,Andreas Rytz,Johannes J. Voegel,Matthew-Alan Roberts
#t2004
#cBioinformatics
#index764946
#% 
#!
  
#*ESTAP-an automated system for the analysis of EST data.
#@Chunhong Mao,John C. Cushman,Gregory D. May,Jennifer W. Weller
#t2003
#cBioinformatics
#index764947
#% 
#!
  
#*Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary.
#@Xizeng Mao,Tao Cai,John G. Olyarchuk,Liping Wei
#t2005
#cBioinformatics
#index764948
#% 
#!
  
#*NodMutDB: a database for genes and mutants involved in symbiosis.
#@Chunhong Mao,Jing Qiu,Chunxia Wang,Trevor C. Charles,Bruno W. S. Sobral
#t2005
#cBioinformatics
#index764949
#% 
#!
  
#*Probabilistic representation of gene regulatory networks.
#@Linyong Mao,Haluk Resat
#t2004
#cBioinformatics
#index764950
#% 
#!
  
#*Arrayplot for visualization and normalization of cDNA microarray data.
#@Philippe Marc,Claude Jacq
#t2002
#cBioinformatics
#index764953
#% 
#!
  
#*Tracker: continuous HMMER and BLAST searching.
#@Madelaine Marchin,Paul T. Kelly,Jianwen Fang
#t2005
#cBioinformatics
#index764954
#% 
#!
  
#*Mining literature for protein-protein interactions.
#@Edward M. Marcotte,Ioannis Xenarios,David Eisenberg
#t2001
#cBioinformatics
#index764955
#% 
#!
  
#*CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data.
#@Adam A. Margolin,Joel Greshock,Tara L. Naylor,Yael Mosse,John M. Maris,Graham Bignell,Alexander I. Saeed,John Quackenbush,Barbara L. Weber
#t2005
#cBioinformatics
#index764956
#% 
#!
  
#*eSAGE: managing and analysing data generated with Serial Analysis of Gene Expression (SAGE).
#@Elliott H. Margulies,Jeffrey W. Innis
#t2000
#cBioinformatics
#index764957
#% 
#!
  
#*START: an automated tool for serial analysis of chromatin occupancy data.
#@Voichita D. Marinescu,Isaac S. Kohane,Tae-Kyung Kim,David A. Harmin,Michael E. Greenberg,Alberto Riva
#t2006
#cBioinformatics
#index764958
#% 
#!
  
#*BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data.
#@J. C. Marioni,Natalie P. Thorne,Simon Tavaré
#t2006
#cBioinformatics
#index764959
#% 
#!
  
#*Non-transcriptional pathway features reconstructed from secondary effects of RNA interference.
#@Florian Markowetz,Jacques Bloch,Rainer Spang
#t2005
#cBioinformatics
#index764960
#% 
#!
  
#*Designing hardware for protein sequence analysis.
#@Alessandro Marongiu,Paolo Palazzari,Vittorio Rosato
#t2003
#cBioinformatics
#index764961
#% 
#!
  
#*SAD - a normalized structural alignment database: improving sequence-structure alignments.
#@Brian Marsden,Ruben Abagyan
#t2004
#cBioinformatics
#index764962
#% 
#!
  
#*PerlPrimer: cross-platform, graphical primer design for standard, bisulphite and real-time PCR.
#@Owen J. Marshall
#t2004
#cBioinformatics
#index764963
#% 
#!
  
#*Classification of microarray data with factor mixture models.
#@Francesca Martella
#t2006
#cBioinformatics
#index764965
#% 
#!
  
#*DBToolkit: processing protein databases for peptide-centric proteomics.
#@Lennart Martens,Joël Vandekerckhove,Kris Gevaert
#t2005
#cBioinformatics
#index764966
#% 
#!
  
#*DBAli: a database of protein structure alignments.
#@Marc A. Martí-Renom,Valentin A. Ilyin,Andrej Sali
#t2001
#cBioinformatics
#index764967
#% 
#!
  
#*Evaluation of the gene-specific dye bias in cDNA microarray experiments.
#@Marie-Laure Martin-Magniette,Julie Aubert,Eric Cabannes,Jean-Jacques Daudin
#t2005
#cBioinformatics
#index764968
#% 
#!
  
#*Answer to the comments of K. Dobbin, J. Shih and R. Simon on the paper 'Evaluation of the gene-specific dye-bias in cDNA microarray experiments'.
#@Marie-Laure Martin-Magniette,Julie Aubert,Eric Cabannes,Jean-Jacques Daudin
#t2005
#cBioinformatics
#index764969
#% 
#!
  
#*PDBSprotEC: a Web-accessible database linking PDB chains to EC numbers via SwissProt.
#@Andrew C. R. Martin
#t2004
#cBioinformatics
#index764970
#% 
#!
  
#*Mapping PDB chains to UniProtKB entries.
#@Andrew C. R. Martin
#t2005
#cBioinformatics
#index764971
#% 
#!
  
#*Using information theory to search for co-evolving residues in proteins.
#@L. C. Martin,Gregory B. Gloor,S. D. Dunn,L. M. Wahl
#t2005
#cBioinformatics
#index764972
#% 
#!
  
#*Visual Representation of Database Search Results: The RHIMS Plot.
#@David M. A. Martin,Pamela Hill,Geoffrey J. Barton,Andrew J. Flavell
#t2003
#cBioinformatics
#index764973
#% 
#!
  
#*Pedstrip: extracting a maximal subset of available, unrelated individuals from a pedigree.
#@Jeremy M. R. Martin,Lan J. Mackay,Christopher J. Rawlings
#t2003
#cBioinformatics
#index764974
#% 
#!
  
#*RDP: detection of recombination amongst aligned sequences.
#@Darren Martin,Ed Rybicki
#t2000
#cBioinformatics
#index764975
#% 
#!
  
#*Predicting protein-protein interactions using signature products.
#@Shawn Martin,Diana C. Roe,Jean-Loup Faulon
#t2005
#cBioinformatics
#index764976
#% 
#!
  
#*RDP2: recombination detection and analysis from sequence alignments.
#@Darren Martin,C. Williamson,David Posada
#t2005
#cBioinformatics
#index764977
#% 
#!
  
#*BacTregulators: a database of transcriptional regulators in bacteria and archaea.
#@Manuel Martínez-Bueno,Antonio J. Molina-Henares,Eduardo Pareja,Juan L. Ramos,Raquel Tobes
#t2004
#cBioinformatics
#index764978
#% 
#!
  
#*GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data.
#@Luis A. Martínez-Cruz,Angel Rubio,María L. Martínez-Chantar,Alberto Labarga,Isabel Barrio,Adam Podhorski,Victor Segura,José L. Sevilla Campo,Matías A. Avila,Jose M. Mato
#t2003
#cBioinformatics
#index764979
#% 
#!
  
#*A decomposition model to track gene expression signatures: preview on observer-independent classification of ovarian cancer.
#@Ann-Marie Martoglio,James W. Miskin,Stephen K. Smith,David J. C. MacKay
#t2002
#cBioinformatics
#index764980
#% 
#!
  
#*BioLingua: a programmable knowledge environment for biologists.
#@J. P. Massar,Michael Travers,Jeff Elhai,Jeff Shrager
#t2005
#cBioinformatics
#index764981
#% 
#!
  
#*GAAS: Gene Array Analyzer Software for management, analysis and visualization of gene expression data.
#@Marco Masseroli,Pietro Cerveri,P. G. Pelicci,Myriam Alcalay
#t2003
#cBioinformatics
#index764982
#% 
#!
  
#*MyWEST: My Web Extraction Software Tool for effective mining of annotations from web-based databanks.
#@Marco Masseroli,Andrea Stella,Natalia Meani,Myriam Alcalay,Francesco Pinciroli
#t2004
#cBioinformatics
#index764983
#% 
#!
  
#*EDIBLE: experimental design and information calculations in phylogenetics.
#@Tim Massingham,Nick Goldman
#t2000
#cBioinformatics
#index764984
#% 
#!
  
#*Use of keyword hierarchies to interpret gene expression patterns.
#@Daniel R. Masys,John B. Welsh,J. Lynn Fink,Michael Gribskov,Igor Klacansky,Jacques Corbeil
#t2001
#cBioinformatics
#index764985
#% 
#!
  
#*Predicting a set of minimal free energy RNA secondary structures common to two sequences.
#@David H. Mathews
#t2005
#cBioinformatics
#index764986
#% 
#!
  
#*Parallel BLAST on split databases.
#@David R. Mathog
#t2003
#cBioinformatics
#index764987
#% 
#!
  
#*Identifying Property Based Sequence Motifs in Protein Families and Superfamilies: Application to DNase-1 Related Endonucleases.
#@Venkatarajan S. Mathura,Catherine H. Schein,Werner Braun
#t2003
#cBioinformatics
#index764988
#% 
#!
  
#*Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
#@Hiroshi Matsui,Kengo Sato,Yasubumi Sakakibara
#t2005
#cBioinformatics
#index764989
#% 
#!
  
#*Knowledge-based computational search for genes associated with the metabolic syndrome.
#@Tsutomu Matsunaga,Masaaki Muramatsu
#t2005
#cBioinformatics
#index764990
#% 
#!
  
#*Interpreting peptide mass spectra by VEMS.
#@R. Matthiesen,M. Lundsgaard,Karen G. Welinder,G. Bauw
#t2003
#cBioinformatics
#index764992
#% 
#!
  
#*BioWareDB: the biomedical software and database search engine.
#@Mads Wichmann Matthiessen
#t2003
#cBioinformatics
#index764993
#% 
#!
  
#*EST-PAGE - managing and analyzing EST data.
#@Lakshmi K. Matukumalli,John J. Grefenstette,Tad S. Sonstegard,Curtis P. Van Tassell
#t2004
#cBioinformatics
#index764994
#% 
#!
  
#*Gene expression data analysis with a dynamically extended self-organized map that exploits class information.
#@Seferina Mavroudi,Stergios Papadimitriou,Anastasios Bezerianos
#t2002
#cBioinformatics
#index764998
#% 
#!
  
#*PTGL - a web-based database application for protein topologies.
#@Patrick May,Stefan Barthel,Ina Koch
#t2004
#cBioinformatics
#index764999
#% 
#!
  
#*Recco: recombination analysis using cost optimization.
#@Jochen Maydt,Thomas Lengauer
#t2006
#cBioinformatics
#index765000
#% 
#!
  
#*VISTA : visualizing global DNA sequence alignments of arbitrary length.
#@Chris Mayor,Michael Brudno,Jody R. Schwartz,Alexander Poliakov,Edward M. Rubin,Kelly A. Frazer,Lior Pachter,Inna Dubchak
#t2000
#cBioinformatics
#index765001
#% 
#!
  
#*GeneOrder: comparing the order of genes in small genomes.
#@Raja Mazumder,Ashok S. Kolaskar,Donald Seto
#t2001
#cBioinformatics
#index765002
#% 
#!
  
#*Multiple-sequence functional annotation and the generalized hidden Markov phylogeny.
#@Jon D. McAuliffe,Lior Pachter,Michael I. Jordan
#t2004
#cBioinformatics
#index765003
#% 
#!
  
#*LTR_STRUC: a novel search and identification program for LTR retrotransposons.
#@Eugene M. McCarthy,John F. McDonald
#t2003
#cBioinformatics
#index765004
#% 
#!
  
#*Using hidden Markov models and observed evolution to annotate viral genomes.
#@Stephen McCauley,Jotun Hein
#t2006
#cBioinformatics
#index765005
#% 
#!
  
#*The complexities of genome analysis, the Retroid agent perspective.
#@Marcella A. McClure
#t2000
#cBioinformatics
#index765006
#% 
#!
  
#*Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure.
#@Brendan J. McConkey,Vladimir Sobolev,Marvin Edelman
#t2002
#cBioinformatics
#index765007
#% 
#!
  
#*Applications of Tree-Maps to hierarchical biological data.
#@Patrick McConnell,Kimberly F. Johnson,Simon M. Lin
#t2002
#cBioinformatics
#index765008
#% 
#!
  
#*Functional annotation from predicted protein interaction networks.
#@Jason McDermott,Roger Eugene Bumgarner,Ram Samudrala
#t2005
#cBioinformatics
#index765009
#% 
#!
  
#*Extracting gene pathway relations using a hybrid grammar: the Arizona Relation Parser.
#@Daniel McDonald,Hsinchun Chen,Hua Su,Byron Marshall
#t2004
#cBioinformatics
#index765010
#% 
#!
  
#*An entity tagger for recognizing acquired genomic variations in cancer literature.
#@Ryan T. McDonald,R. Scott Winters,Mark A. Mandel,Yang Jin,Peter S. White,Fernando C. N. Pereira
#t2004
#cBioinformatics
#index765011
#% 
#!
  
#*Paircoil2: improved prediction of coiled coils from sequence.
#@A. V. McDonnell,Taijiao Jiang,Amy E. Keating,B. Berger
#t2006
#cBioinformatics
#index765012
#% 
#!
  
#*PIR: a new resource for bioinformatics.
#@Peter B. McGarvey,Hongzhan Huang,Winona C. Barker,Bruce C. Orcutt,John S. Garavelli,Geetha Y. Srinivasarao,Lai-Su L. Yeh,Chunlin Xiao,Cathy H. Wu
#t2000
#cBioinformatics
#index765013
#% 
#!
  
#*The PSIPRED protein structure prediction server.
#@Liam J. McGuffin,Kevin Bryson,David T. Jones
#t2000
#cBioinformatics
#index765014
#% 
#!
  
#*What are the baselines for protein fold recognition?
#@Liam J. McGuffin,Kevin Bryson,David T. Jones
#t2001
#cBioinformatics
#index765015
#% 
#!
  
#*Improvement of the GenTHREADER Method for Genomic Fold Recognition.
#@Liam J. McGuffin,David T. Jones
#t2003
#cBioinformatics
#index765016
#% 
#!
  
#*The Genomic Threading Database.
#@Liam J. McGuffin,Stefano A. Street,Søren-Aksel Sørensen,David T. Jones
#t2004
#cBioinformatics
#index765017
#% 
#!
  
#*MAC5: Bayesian inference of phylogenetic trees from DNA sequences incorporating gaps.
#@Gráinne McGuire,Michael C. Denham,David J. Balding
#t2001
#cBioinformatics
#index765018
#% 
#!
  
#*TOPAL 2.0: improved detection of mosaic sequences within multiple alignments.
#@Gráinne McGuire,Frank Wright
#t2000
#cBioinformatics
#index765019
#% 
#!
  
#*TOPAL: recombination detection in DNA and protein sequences.
#@Gráinne McGuire,Frank Wright
#t1998
#cBioinformatics
#index765020
#% 
#!
  
#*Development of joint application strategies for two microbial gene finders.
#@Alice C. McHardy,Alexander Goesmann,Alfred Pühler,Folker Meyer
#t2004
#cBioinformatics
#index765021
#% 
#!
  
#*MADGE: scalable distributed data management software for cDNA microarrays.
#@Richard A. McIndoe,Aaron Lanzen,Kimberly Hurtz
#t2003
#cBioinformatics
#index765022
#% 
#!
  
#*GCUA: general codon usage analysis.
#@James O. McInerney
#t1998
#cBioinformatics
#index765023
#% 
#!
  
#*AcePrimer: automation of PCR primer design based on gene structure.
#@Sheldon J. McKay,Steven J. M. Jones
#t2002
#cBioinformatics
#index765024
#% 
#!
  
#*A simple implementation of a normal mixture approach to differential gene expression in multiclass microarrays.
#@Geoffrey J. McLachlan,Richard Bean,Liat Ben-Tovim Jones
#t2006
#cBioinformatics
#index765025
#% 
#!
  
#*A mixture model-based approach to the clustering of microarray expression data.
#@Geoffrey J. McLachlan,Richard Bean,David Peel
#t2002
#cBioinformatics
#index765026
#% 
#!
  
#*PathMiner: predicting metabolic pathways by heuristic search.
#@Daniel C. McShan,S. Rao,Imran Shah
#t2003
#cBioinformatics
#index765027
#% 
#!
  
#*Methods for assessing reproducibility of clustering patterns observed in analyses of microarray data.
#@Lisa M. McShane,Michael D. Radmacher,Boris Freidlin,Ren Yu,Ming-Chung Li,Richard Simon
#t2002
#cBioinformatics
#index765028
#% 
#!
  
#*Imagene: an integrated computer environment for sequence annotation and analysis.
#@Claudine Médigue,François Rechenmann,Antoine Danchin,Alain Viari
#t1999
#cBioinformatics
#index765030
#% 
#!
  
#*Bayesian infinite mixture model based clustering of gene expression profiles.
#@Mario Medvedovic,Siva Sivaganesan
#t2002
#cBioinformatics
#index765031
#% 
#!
  
#*Bayesian mixture model based clustering of replicated microarray data.
#@Mario Medvedovic,Ka Yee Yeung,Roger Eugene Bumgarner
#t2004
#cBioinformatics
#index765032
#% 
#!
  
#*A statistical model providing comprehensive predictions for the mRNA differential display.
#@David Meintrup,Ellen Reisinger
#t2005
#cBioinformatics
#index765034
#% 
#!
  
#*Distribution of words with a predefined range of mismatches to a DNA probe in bacterial genomes.
#@O. Michael Melko,Arcady R. Mushegian
#t2004
#cBioinformatics
#index765036
#% 
#!
  
#*MEG (Model Extender for Gepasi): a program for the modelling of complex, heterogeneous, cellular systems.
#@Pedro Mendes,Douglas B. Kell
#t2001
#cBioinformatics
#index765038
#% 
#!
  
#*Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation.
#@Pedro Mendes,Douglas B. Kell
#t1998
#cBioinformatics
#index765039
#% 
#!
  
#*Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis.
#@L. Mendoza,Denis Thieffry,E. R. Alvarez-Buylla
#t1999
#cBioinformatics
#index765040
#% 
#!
  
#*Twelve C2H2 zinc-finger genes on human chromosome 19 can be each translated into the same type of protein after frameshifts.
#@Shao-Wu Meng,Zhuo Zhang,Jinyan Li
#t2004
#cBioinformatics
#index765043
#% 
#!
  
#*A comparison of signal sequence prediction methods using a test set of signal peptides.
#@Kerstin M. L. Menne,Henning Hermjakob,Rolf Apweiler
#t2000
#cBioinformatics
#index765046
#% 
#!
  
#*Sight: automating genomic data-mining without programming skills.
#@Audrius Meskauskas,Frank Lehmann-Horn,Karin Jurkat-Rott
#t2004
#cBioinformatics
#index765047
#% 
#!
  
#*PROMO: detection of known transcription regulatory elements using species-tailored searches.
#@Xavier Messeguer,Ruth Escudero,Domènec Farré,Oscar Núñez,Javier Martínez,M. Mar Albà
#t2002
#cBioinformatics
#index765048
#% 
#!
  
#*Statistical alignment based on fragment insertion and deletion models.
#@Dirk Metzler
#t2003
#cBioinformatics
#index765050
#% 
#!
  
#*German Conference on Bioinformatics 2003 (GCB'03).
#@Hans-Werner Mewes
#t2004
#cBioinformatics
#index765051
#% 
#!
  
#*Comparative ab initio prediction of gene structures using pair HMMs.
#@Irmtraud M. Meyer,Richard Durbin
#t2002
#cBioinformatics
#index765052
#% 
#!
  
#*Using clusters of computers for large QU-GENE simulation experiments.
#@Kevin P. Micallef,Mark Cooper,Dean W. Podlich
#t2001
#cBioinformatics
#index765053
#% 
#!
  
#*SITEBLAST-rapid and sensitive local alignment of genomic sequences employing motif anchors.
#@Morris Michael,Christoph Dieterich,Martin Vingron
#t2005
#cBioinformatics
#index765054
#% 
#!
  
#*eXPatGen: Generating Dynamic Expression Patterns for the Systematic Evaluation of Analytical Methods.
#@Dennis J. Michaud,Adam G. Marsh,Prasad S. Dhurjati
#t2003
#cBioinformatics
#index765055
#% 
#!
  
#*Ontologies for Behavior.
#@Peter E. Midford
#t2004
#cBioinformatics
#index765059
#% 
#!
  
#*seq++: analyzing biological sequences with a range of Markov-related models.
#@Vincent Miele,Pierre-Yves Bourguignon,David Robelin,Grégory Nuel,Hugues Richard
#t2005
#cBioinformatics
#index765060
#% 
#!
  
#*Protein structural class identification directly from NMR spectra using averaged chemical shifts.
#@S. P. Mielke,V. V. Krishnan
#t2003
#cBioinformatics
#index765061
#% 
#!
  
#*MDB: a database system utilizing automatic construction of modules and STAR-derived universal language.
#@Eugenia Migliavacca,Alexei A. Adzhubei,Manuel C. Peitsch
#t2001
#cBioinformatics
#index765062
#% 
#!
  
#*WebVar: a resource for the rapid estimation of relative site variability from multiple sequence alignments.
#@Flavio Mignone,David Stephen Horner,Graziano Pesole
#t2004
#cBioinformatics
#index765063
#% 
#!
  
#*Sequence patterns derived from the automated prediction of functional residues in structurally-aligned homologous protein families.
#@Ricardo Núñez Miguel
#t2004
#cBioinformatics
#index765064
#% 
#!
  
#*A structure and evolution-guided Monte Carlo sequence selection strategy for multiple alignment-based analysis of proteins.
#@I. Mihalek,I. Res,Olivier Lichtarge
#t2006
#cBioinformatics
#index765065
#% 
#!
  
#*Evolutionary trace report_maker: a new type of service for comparative analysis of proteins.
#@I. Mihalek,I. Res,Olivier Lichtarge
#t2006
#cBioinformatics
#index765066
#% 
#!
  
#*Improving genome annotations using phylogenetic profile anomaly detection.
#@Tarjei S. Mikkelsen,James E. Galagan,Jill P. Mesirov
#t2005
#cBioinformatics
#index765067
#% 
#!
  
#*ParIS Genome Rearrangement server.
#@István Miklós,Péter Ittzés,Jotun Hein
#t2005
#cBioinformatics
#index765068
#% 
#!
  
#*IMpRH Server: an RH mapping server available on the Web.
#@Denis Milan,Rachel Hawken,Cédric Cabau,Sophie Leroux,Carine Genet,Yvette Lahbib,Gwenola Tosser,Annie Robic,Francois Hatey,Lee Alexander,Craig Beattie,Larry Schook,Martine Yerle,Joël Gellin
#t2000
#cBioinformatics
#index765069
#% 
#!
  
#*GeneBuilder: interactive in silico prediction of gene structure.
#@Luciano Milanesi,D. D'Angelo,Igor B. Rogozin
#t1999
#cBioinformatics
#index765070
#% 
#!
  
#*Comparison of genomic DNA sequences: solved and unsolved problems.
#@Webb Miller
#t2001
#cBioinformatics
#index765072
#% 
#!
  
#*A RAPID algorithm for sequence database comparisons: application to the identification of vector contamination in the EMBL databases.
#@Crispin J. Miller,J. Gurd,Andy Brass
#t1999
#cBioinformatics
#index765077
#% 
#!
  
#*TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments.
#@Iain Milne,Frank Wright,Glenn Rowe,David F. Marshall,Dirk Husmeier,Gráinne McGuire
#t2004
#cBioinformatics
#index765082
#% 
#!
  
#*The Economic Value of Bioinformation.
#@Aleksandar Milosavljevic
#t2000
#cBioinformatics
#index765083
#% 
#!
  
#*SPI: a tool for incorporating gene expression data into a four-dimensional database of Caenorhabditis elegans embryogenesis.
#@Yohei Minakuchi,Masahiro Ito,Yuji Kohara
#t2004
#cBioinformatics
#index765086
#% 
#!
  
#*pathSCOUTTM: exploration and analysis of biochemical pathways.
#@E. Minch,M. de Rinaldis,S. Weiss
#t2003
#cBioinformatics
#index765087
#% 
#!
  
#*pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies.
#@Bui Quang Minh,Le Sy Vinh,Arndt von Haeseler,Heiko A. Schmidt
#t2005
#cBioinformatics
#index765088
#% 
#!
  
#*Dual multiple change-point model leads to more accurate recombination detection.
#@Vladimir N. Minin,Karin S. Dorman,Fang Fang,Marc A. Suchard
#t2005
#cBioinformatics
#index765089
#% 
#!
  
#*Robust estimation of protein expression ratios with lysate microarray technology.
#@Cristian Mircean,Ilya Shmulevich,David Cogdell,Woonyoung Choi,Yu Jia,Ioan Tabus,Stanley R. Hamilton,Wei Zhang
#t2005
#cBioinformatics
#index765091
#% 
#!
  
#*Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors.
#@Andrey A. Mironov,Pavel S. Novichkov,Mikhail S. Gelfand
#t2001
#cBioinformatics
#index765093
#% 
#!
  
#*Gene network inference from incomplete expression data: transcriptional control of hematopoietic commitment.
#@Kristin Missal,Michael A. Cross,Dirk Drasdo
#t2006
#cBioinformatics
#index765094
#% 
#!
  
#*Amphiphilicity index of polar amino acids as an aid in the characterization of amino acid preference at membrane-water interfaces.
#@Shigeki Mitaku,Takatsugu Hirokawa,Toshiyuki Tsuji
#t2002
#cBioinformatics
#index765095
#% 
#!
  
#*METIS: multiple extraction techniques for informative sentences.
#@Alex Mitchell,Anna Divoli,Jee-Hyub Kim,Melanie Hilario,I. Selimas,Teresa K. Attwood
#t2005
#cBioinformatics
#index765096
#% 
#!
  
#*PRECIS: Protein reports engineered from concise information in SWISS-PROT.
#@Alex Mitchell,Jacqueline Renée Reich,Terri K. Attwood
#t2003
#cBioinformatics
#index765097
#% 
#!
  
#*Discrepancies in dbSNP confirmation rates and allele frequency distributions from varying genotyping error rates and patterns.
#@Adele A. Mitchell,Michael E. Zwick,Aravinda Chakravarti,David J. Cutler
#t2004
#cBioinformatics
#index765098
#% 
#!
  
#*Probabilistic scoring measures for profile-profile comparison yield more accurate short seed alignments.
#@David Mittelman,Ruslan Sadreyev,Nick V. Grishin
#t2003
#cBioinformatics
#index765099
#% 
#!
  
#*A novel strategy to design highly specific PCR primers based on the stability and uniqueness of 3'-end subsequences.
#@Fumihito Miura,Chihiro Uematsu,Yoshiyuki Sakaki,Takashi Ito
#t2005
#cBioinformatics
#index765100
#% 
#!
  
#*Analysis of conservation and substitutions of secondary structure elements within protein superfamilies.
#@Kenji Mizuguchi,Tom L. Blundell
#t2000
#cBioinformatics
#index765101
#% 
#!
  
#*JOY: protein sequence-structure representation and analysis.
#@Kenji Mizuguchi,Charlotte M. Deane,Tom L. Blundell,Mark S. Johnson,John P. Overington
#t1998
#cBioinformatics
#index765102
#% 
#!
  
#*ORI-GENE: gene classification based on the evolutionary tree.
#@Hideaki Mizuno,Yoshimasa Tanaka,Kenta Nakai,Akinori Sarai
#t2001
#cBioinformatics
#index765103
#% 
#!
  
#*PERMOL: restraint-based protein homology modeling using DYANA or CNS.
#@Andreas Möglich,Daniel Weinfurtner,Wolfram Gronwald,Till Maurer,Hans Robert Kalbitzer
#t2005
#cBioinformatics
#index765107
#% 
#!
  
#*Novel organelle-targeting signals in viral proteins.
#@K. V. Krishna Mohan,C. D. Atreya
#t2003
#cBioinformatics
#index765108
#% 
#!
  
#*Ribostral: an RNA 3D alignment analyzer and viewer based on basepair isostericities.
#@Ali Mokdad,Neocles Leontis
#t2006
#cBioinformatics
#index765109
#% 
#!
  
#*Prediction error estimation: a comparison of resampling methods.
#@Annette M. Molinaro,Richard Simon,Ruth M. Pfeiffer
#t2005
#cBioinformatics
#index765110
#% 
#!
  
#*BALLView: a tool for research and education in molecular modeling.
#@Andreas Moll,Andreas Hildebrandt,Hans-Peter Lenhof,Oliver Kohlbacher
#t2006
#cBioinformatics
#index765111
#% 
#!
  
#*Evaluation of methods for the prediction of membrane spanning regions.
#@Steffen Möller,Michael D. R. Croning,Rolf Apweiler
#t2001
#cBioinformatics
#index765112
#% 
#!
  
#*Erratum: Evaluation of methods for the prediction of membrane spanning regions.
#@Steffen Möller,Michael D. R. Croning,Rolf Apweiler
#t2002
#cBioinformatics
#index765113
#% 
#!
  
#*A collection of well characterised integral membrane proteins.
#@Steffen Möller,Evgenia V. Kriventseva,Rolf Apweiler
#t2000
#cBioinformatics
#index765114
#% 
#!
  
#*EDITtoTrEMBL: a distributed approach to high-quality automated protein sequence annotation.
#@Steffen Möller,Ulf Leser,Wolfgang Fleischmann,Rolf Apweiler
#t1999
#cBioinformatics
#index765115
#% 
#!
  
#*Application of Bayesian Decomposition for analysing microarray data.
#@Thomas D. Moloshok,R. R. Klevecz,Jeffrey D. Grant,Frank J. Manion,W. F. Speier IV,Michael F. Ochs
#t2002
#cBioinformatics
#index765116
#% 
#!
  
#*The Sulfinator: predicting tyrosine sulfation sites in protein sequences.
#@Flavio Monigatti,Elisabeth Gasteiger,Amos Bairoch,Eva Jung
#t2002
#cBioinformatics
#index765118
#% 
#!
  
#*CHORAL: a differential geometry approach to the prediction of the cores of protein structures.
#@Rinaldo W. Montalvão,Richard E. Smith,Simon C. Lovell,Tom L. Blundell
#t2005
#cBioinformatics
#index765119
#% 
#!
  
#*HapSim: a simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients.
#@Giovanni Montana
#t2005
#cBioinformatics
#index765120
#% 
#!
  
#*ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation.
#@Stephen Montgomery,Obi L. Griffith,Monica C. Sleumer,Casey M. Bergman,Misha Bilenky,Erin Pleasance,Y. Prychyna,X. Zhang,Steven J. M. Jones
#t2006
#cBioinformatics
#index765121
#% 
#!
  
#*Architecture of basic building blocks in protein and domain structural interaction networks.
#@Hyun S. Moon,Jonghwa Bhak,Kwang Hyung Lee,Doheon Lee
#t2005
#cBioinformatics
#index765122
#% 
#!
  
#*MutDB: annotating human variation with functionally relevant data.
#@Sean D. Mooney,Russ B. Altman
#t2003
#cBioinformatics
#index765123
#% 
#!
  
#*Discontinuous epitope prediction based on mimotope analysis.
#@Violaine Moreau,Claude Granier,Sylvie Villard,Daniel Laune,Franck Molina
#t2006
#cBioinformatics
#index765127
#% 
#!
  
#*TIP: protein backtranslation aided by genetic algorithms.
#@Andrés Moreira,Alejandro Maass
#t2004
#cBioinformatics
#index765128
#% 
#!
  
#*ET viewer: an application for predicting and visualizing functional sites in protein structures.
#@Daniel H. Morgan,David M. Kristensen,David Mittelman,Olivier Lichtarge
#t2006
#cBioinformatics
#index765129
#% 
#!
  
#*A space-efficient algorithm for aligning large genomic sequences.
#@Burkhard Morgenstern
#t2000
#cBioinformatics
#index765130
#% 
#!
  
#*DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment.
#@Burkhard Morgenstern
#t1999
#cBioinformatics
#index765131
#% 
#!
  
#*DIALIGN: finding local similarities by multiple sequence alignment.
#@Burkhard Morgenstern,Kornelie Frech,Andreas W. M. Dress,Thomas Werner
#t1998
#cBioinformatics
#index765132
#% 
#!
  
#*AltAVisT: Comparing alternative multiple sequence alignments.
#@Burkhard Morgenstern,Sachin Goel,Alexander Sczyrba,Andreas W. M. Dress
#t2003
#cBioinformatics
#index765133
#% 
#!
  
#*Exon discovery by genomic sequence alignment.
#@Burkhard Morgenstern,Oliver Rinner,Saïd Abdeddaïm,Dirk Haase,Klaus F. X. Mayer,Andreas W. M. Dress,Hans-Werner Mewes
#t2002
#cBioinformatics
#index765134
#% 
#!
  
#*Multiple sequence alignment with user-defined constraints at GOBICS.
#@Burkhard Morgenstern,Nadine Werner,Sonja J. Prohaska,Rasmus Steinkamp,Isabelle Schneider,Amarendran R. Subramanian,Peter F. Stadler,Jan Weyer-Menkhoff
#t2005
#cBioinformatics
#index765135
#% 
#!
  
#*WindowMasker: window-based masker for sequenced genomes.
#@Aleksandr Morgulis,E. Michael Gertz,Alejandro A. Schäffer,Richa Agarwala
#t2006
#cBioinformatics
#index765136
#% 
#!
  
#*NetGen: generating phylogenetic networks with diploid hybrids.
#@M. M. Morin,Bernard M. E. Moret
#t2006
#cBioinformatics
#index765137
#% 
#!
  
#*Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum.
#@Jeffrey S. Morris,Kevin R. Coombes,John Koomen,Keith A. Baggerly,Ryuji Kobayashi
#t2005
#cBioinformatics
#index765138
#% 
#!
  
#*Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.
#@Richard J. Morris,Rafael Najmanovich,Abdullah Kahraman,Janet M. Thornton
#t2005
#cBioinformatics
#index765139
#% 
#!
  
#*A lock-and-key model for protein-protein interactions.
#@Julie L. Morrison,Rainer Breitling,Desmond J. Higham,David R. Gilbert
#t2006
#cBioinformatics
#index765140
#% 
#!
  
#*VIZARD: analysis of Affymetrix Arabidopsis GeneChi® data.
#@Nick Moseyko,Lewis J. Feldman
#t2002
#cBioinformatics
#index765143
#% 
#!
  
#*Trace alignment and some of its applications.
#@Richard Mott
#t1998
#cBioinformatics
#index765145
#% 
#!
  
#*Local sequence alignments with monotonic gap penalties.
#@Richard Mott
#t1999
#cBioinformatics
#index765146
#% 
#!
  
#*A Java applet for visualizing protein-protein interaction.
#@Ralf Mrowka
#t2001
#cBioinformatics
#index765155
#% 
#!
  
#*Oligodb-interactive design of oligo DNA for transcription profiling of human genes.
#@Ralf Mrowka,Johannes Schuchhardt,Christoph Gille
#t2002
#cBioinformatics
#index765156
#% 
#!
  
#*PredAcc: prediction of solvent accessibility.
#@Marie-Hélène Mucchielli-Giorgi,Serge A. Hazout,Pierre Tufféry
#t1999
#cBioinformatics
#index765157
#% 
#!
  
#*Thermodynamics of RNA-RNA binding.
#@Ulrike Mückstein,Hakim Tafer,Jörg Hackermüller,Stephan H. F. Bernhart,Peter F. Stadler,Ivo L. Hofacker
#t2006
#cBioinformatics
#index765158
#% 
#!
  
#*Plotting haplotype-specific linkage disequilibrium patterns by extended haplotype homozygosity.
#@Jakob C. Mueller,Christophe Andreoli
#t2004
#cBioinformatics
#index765159
#% 
#!
  
#*eQTL Explorer: integrated mining of combined genetic linkage and expression experiments.
#@Michael Mueller,Anuj Goel,Manjula Thimma,Nicholas J. Dickens,Timothy J. Aitman,Jonathan Mangion
#t2006
#cBioinformatics
#index765160
#% 
#!
  
#*Analysis assistant for single-molecule force spectroscopy data on membrane proteins - MPTV.
#@Frank Mueller,Daniel J. Muller,Dirk Labudde
#t2006
#cBioinformatics
#index765161
#% 
#!
  
#*Mega2: data-handling for facilitating genetic linkage and association analyses.
#@Nandita Mukhopadhyay,Lee Almasy,Mark Schroeder,William P. Mulvihill,Daniel E. Weeks
#t2005
#cBioinformatics
#index765164
#% 
#!
  
#*Convergence of the proteomic pattern in cancer.
#@Ute Müller,Günther Ernst,Christian Melle,Reinhard Guthke,Ferdinand von Eggeling
#t2006
#cBioinformatics
#index765165
#% 
#!
  
#*Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes.
#@Richard Münch,Karsten Hiller,Andreas Grote,Maurice Scheer,Johannes Klein,Max Schobert,Dieter Jahn
#t2005
#cBioinformatics
#index765167
#% 
#!
  
#*SHARP: protein-protein interaction predictions using patch analysis.
#@Yoichi Murakami,Susan Jones
#t2006
#cBioinformatics
#index765168
#% 
#!
  
#*Gene recognition by combination of several gene-finding programs.
#@K. Murakami,T. Takagi
#t1998
#cBioinformatics
#index765169
#% 
#!
  
#*me-PCR: a refined ultrafast algorithm for identifying sequence-defined genomic elements.
#@Kevin Murphy,Towfique Raj,R. Scott Winters,Peter S. White
#t2004
#cBioinformatics
#index765170
#% 
#!
  
#*The domain-server: direct prediction of protein domain-homologies from BLAST search.
#@János Murvai,Kristian Vlahovicek,Endre Barta,S. Parthasarathy,Hedvig Hegyi,Friedhelm Pfeiffer,Sándor Pongor
#t1999
#cBioinformatics
#index765172
#% 
#!
  
#*A simple probabilistic scoring method for protein domain identification.
#@János Murvai,Kristian Vlahovicek,Sándor Pongor
#t2000
#cBioinformatics
#index765173
#% 
#!
  
#*Registration of the expression patterns of Drosophila segmentation genes by two independent methods.
#@Ekaterina Myasnikova,Anastassia Samsonova,Konstantin Kozlov,Maria Samsonova,John Reinitz
#t2001
#cBioinformatics
#index765174
#% 
#!
  
#*Accurate detection of aneuploidies in array CGH and gene expression microarray data.
#@Chad L. Myers,Maitreya J. Dunham,Sun-Yuan Kung,Olga G. Troyanskaya
#t2004
#cBioinformatics
#index765175
#% 
#!
  
#*A statistical model for HIV-1 sequence classification using the subtype analyser (STAR).
#@R. E. Myers,C. V. Gale,A. Harrison,Y. Takeuchi,P. Kellam
#t2005
#cBioinformatics
#index765176
#% 
#!
  
#*Additional Gene Ontology structure for improved biological reasoning.
#@Simen Myhre,Henrik Tveit,Torulf Mollestad,Astrid Lægreid
#t2006
#cBioinformatics
#index765181
#% 
#!
  
#*Mapmerge: merge genomic maps.
#@Prakash M. Nadkarni
#t1998
#cBioinformatics
#index765184
#% 
#!
  
#*A study of accuracy, precision in oligonucleotide arrays: extracting more signal at large concentrations.
#@Felix Naef,Nicholas D. Socci,Marcelo Magnasco
#t2003
#cBioinformatics
#index765186
#% 
#!
  
#*Automatic prediction of protein domains from sequence information using a hybrid learning system.
#@Niranjan Nagarajan,Golan Yona
#t2004
#cBioinformatics
#index765187
#% 
#!
  
#*Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns.
#@Hideki Nagasaki,Masanori Arita,Tatsuya Nishizawa,Makiko Suwa,Osamu Gotoh
#t2006
#cBioinformatics
#index765188
#% 
#!
  
#*Concept and prototype of protein-ligand docking simulator with force feedback technology.
#@Hiroshi Nagata,Hiroshi Mizushima,Hiroshi Tanaka
#t2002
#cBioinformatics
#index765189
#% 
#!
  
#*Gene Interaction in DNA Microarray Data Is Decomposed by Information Geometric Measure.
#@Hiroyuki Nakahara,Shin-ichi Nishimura,Masato Inoue,Gen Hori,Shun-ichi Amari
#t2003
#cBioinformatics
#index765191
#% 
#!
  
#*TRFMA: a web-based tool for terminal restriction fragment length polymorphism analysis based on molecular weight.
#@Yoshio Nakano,Toru Takeshita,Yoshihisa Yamashita
#t2006
#cBioinformatics
#index765193
#% 
#!
  
#*Development of the receptor database (RDB): application to the endocrine disruptor problem.
#@Kotoko Nakata,T. Takai,Tsuguchika Kaminuma
#t1999
#cBioinformatics
#index765196
#% 
#!
  
#*An ensemble of K-local hyperplanes for predicting protein-protein interactions.
#@Loris Nanni,Alessandra Lumini
#t2006
#cBioinformatics
#index765200
#% 
#!
  
#*Background rareness-based iterative multiple sequence alignment algorithm for regulatory element detection.
#@Chandrasegaran Narasimhan,Philip F. LoCascio,Edward C. Uberbacher
#t2003
#cBioinformatics
#index765201
#% 
#!
  
#*Sequence features of DNA binding sites reveal structural class of associated transcription factor.
#@Leelavati Narlikar,Alexander J. Hartemink
#t2006
#cBioinformatics
#index765202
#% 
#!
  
#*PreP: gene expression data pre-processing.
#@Jorge García de la Nava,Sacha A. F. T. van Hijum,Oswaldo Trelles
#t2003
#cBioinformatics
#index765204
#% 
#!
  
#*Engene: the processing and exploratory analysis of gene expression data.
#@Jorge García de la Nava,Daniel Franco Santaella,Jesús Cuenca Alba,José María Carazo,Oswaldo Trelles,Alberto D. Pascual-Montano
#t2003
#cBioinformatics
#index765205
#% 
#!
  
#*Intelligent client for integrating bioinformatics services.
#@Ismael Navas Delgado,Maria del Mar Rojano-Muñoz,Sergio Ramírez,Antonio Jesús Pérez,Eduardo Andrés León,José Francisco Aldana Montes,Oswaldo Trelles
#t2006
#cBioinformatics
#index765206
#% 
#!
  
#*Generation of 3D templates of active sites of proteins with rigid prosthetic groups.
#@Jean-Christophe Nebel
#t2006
#cBioinformatics
#index765208
#% 
#!
  
#*ESTminer: a suite of programs for gene and allele identification.
#@Rex T. Nelson,David Grant,Randy C. Shoemaker
#t2005
#cBioinformatics
#index765211
#% 
#!
  
#*Terminology-driven Mining of Biomedical Literature.
#@Goran Nenadic,Irena Spasic,Sophia Ananiadou
#t2003
#cBioinformatics
#index765212
#%41674
#%372251
#!
  
#*Assembly of fingerprint contigs: parallelized FPC.
#@S. R. Ness,W. Terpstra,Martin Krzywinski,Marco A. Marra,Steven J. M. Jones
#t2002
#cBioinformatics
#index765214
#% 
#!
  
#*Design of a DNA chip for detection of unknown genetically modified organisms (GMOs).
#@Håvard Nesvold,Anja Bråthen Kristoffersen,Arne Holst-Jensen,Knut G. Berdal
#t2005
#cBioinformatics
#index765216
#% 
#!
  
#*The Baumgartner-Wei?-Schindler test for the detection of differentially expressed genes in replicated microarray experiments.
#@Markus Neuháuser II,Roswitha Senske
#t2004
#cBioinformatics
#index765217
#% 
#!
  
#*WEBMAP: radiation hybrid mapping on the WWW.
#@W. Newell,P. Sanseau,J. Riley,A. Lyall
#t1998
#cBioinformatics
#index765218
#% 
#!
  
#*PHAT: a transmembrane-specific substitution matrix.
#@Pauline C. Ng,Jorja G. Henikoff,Steven Henikoff
#t2000
#cBioinformatics
#index765219
#% 
#!
  
#*A Mixture model with random-effects components for clustering correlated gene-expression profiles.
#@Shu-Kay Ng,Geoffrey J. McLachlan,Kui Wang,Liat Ben-Tovim Jones,S.-W. Ng
#t2006
#cBioinformatics
#index765220
#% 
#!
  
#*Integrative Approach for Computationally Inferring Protein Domain Interactions.
#@See-Kiong Ng,Zhuo Zhang,Soon-Heng Tan
#t2003
#cBioinformatics
#index765221
#%558842
#!
  
#*Frequency Finder: a multi-source web application for collection of public allele frequencies of SNP markers.
#@Tu H. Nguyen,Chunyu Liu,Elliot S. Gershon,Francis J. McMahon
#t2004
#cBioinformatics
#index765222
#% 
#!
  
#*Tumor classification by partial least squares using microarray gene expression data.
#@Danh V. Nguyen,David M. Rocke
#t2002
#cBioinformatics
#index765223
#% 
#!
  
#*Multi-class cancer classification via partial least squares with gene expression profiles.
#@Danh V. Nguyen,David M. Rocke
#t2002
#cBioinformatics
#index765224
#% 
#!
  
#*Partial least squares proportional hazard regression for application to DNA microarray survival data.
#@Danh V. Nguyen,David M. Rocke
#t2002
#cBioinformatics
#index765225
#% 
#!
  
#*Divide-and-conquer approach for the exemplar breakpoint distance.
#@C. Thach Nguyen,Y. C. Tay,Louxin Zhang
#t2005
#cBioinformatics
#index765226
#% 
#!
  
#*SSMAL: similarity searching with alignment graphs.
#@Pierre Nicodème
#t1998
#cBioinformatics
#index765229
#% 
#!
  
#*GEL: a novel genotype calling algorithm using empirical likelihood.
#@Dan L. Nicolae,Xiaolin Wu,Kazuaki Miyake,Nancy J. Cox
#t2006
#cBioinformatics
#index765230
#% 
#!
  
#*Suffix-tree analyser (STAN): looking for nucleotidic and peptidic patterns in chromosomes.
#@Jacques Nicolas,Patrick Durand,Grégory Ranchy,Sébastien Tempel,Anne-Sophie Valin
#t2005
#cBioinformatics
#index765231
#% 
#!
  
#*Integrated analysis of transcriptomic and proteomic data of : zero-inflated Poisson regression models to predict abundance of undetected proteins.
#@Lei Nie,Gang Wu,Fred J. Brockman,Weiwen Zhang
#t2006
#cBioinformatics
#index765232
#% 
#!
  
#*Implementation of a gene expression index calculation method based on the PDNN model.
#@Henrik Bjørn Nielsen,Laurent Gautier,Steen Knudsen
#t2005
#cBioinformatics
#index765233
#% 
#!
  
#*Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays.
#@Henrik Bjørn Nielsen,Steen Knudsen
#t2002
#cBioinformatics
#index765234
#% 
#!
  
#*Large-scale prokaryotic gene prediction and comparison to genome annotation.
#@Pernille Nielsen,Anders Krogh
#t2005
#cBioinformatics
#index765235
#% 
#!
  
#*Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.
#@Morten Nielsen,Claus Lundegaard,Peder Worning,Christina Sylvester-Hvid,Kasper Lamberth,Søren Buus,Søren Brunak,Ole Lund
#t2004
#cBioinformatics
#index765236
#% 
#!
  
#*Pathway studio - the analysis and navigation of molecular networks.
#@Alexander Nikitin,Sergei Egorov,Nikolai Daraselia,Ilya Mazo
#t2003
#cBioinformatics
#index765238
#% 
#!
  
#*Approximate geodesic distances reveal biologically relevant structures in microarray data.
#@Jens Nilsson,Thoas Fioretos,Mattias Höglund,Magnus Fontes
#t2004
#cBioinformatics
#index765239
#% 
#!
  
#*galaxie-CGI scripts for sequence identification through automated phylogenetic analysis.
#@R. Henrik Nilsson,Karl-Henrik Larsson,Björn M. Ursing
#t2004
#cBioinformatics
#index765241
#% 
#!
  
#*Evolution of amino acid biosynthesis and enzymes with broad substrate specificity.
#@Hiromi Nishida
#t2001
#cBioinformatics
#index765242
#% 
#!
  
#*Distribution of genes for lysine biosynthesis through the aminoadipate pathway among prokaryotic genomes.
#@Hiromi Nishida
#t2001
#cBioinformatics
#index765243
#% 
#!
  
#*Genome structures embossed by oligonucleotide-stickiness.
#@Koichi Nishigaki,Ayumu Saito
#t2002
#cBioinformatics
#index765244
#% 
#!
  
#*Information Concept in Biology.
#@Ken Nishikawa
#t2002
#cBioinformatics
#index765245
#% 
#!
  
#*Prediction whether a human cDNA sequence contains initiation codon by combining statistical information and similarity with protein sequences.
#@Tetsuo Nishikawa,Toshio Ota,Takao Isogai
#t2000
#cBioinformatics
#index765246
#% 
#!
  
#*SNPicker: a graphical tool for primer picking in designing mutagenic endonuclease restriction assays.
#@Tianhua Niu,Zhenjun Hu
#t2004
#cBioinformatics
#index765248
#% 
#!
  
#*Quick selection of representative protein chain sets based on customizable requirements.
#@Tamotsu Noguchi,Kentaro Onizuka,Makoto Ando,Hideo Matsuda,Yutaka Akiyama
#t2000
#cBioinformatics
#index765249
#% 
#!
  
#*YODA: selecting signature oligonucleotides.
#@Eric K. Nordberg
#t2005
#cBioinformatics
#index765250
#% 
#!
  
#*Mocca: semi-automatic method for domain hunting.
#@Cédric Notredame
#t2001
#cBioinformatics
#index765251
#% 
#!
  
#*COFFEE: an objective function for multiple sequence alignments.
#@Cédric Notredame,Liisa Holm,Desmond G. Higgins
#t1998
#cBioinformatics
#index765252
#% 
#!
  
#*Pathway recognition and augmentation by computational analysis of microarray expression data.
#@Barbara A. Novak,Ajay N. Jain
#t2006
#cBioinformatics
#index765253
#% 
#!
  
#*MELTING, computing the melting temperature of nucleic acid duplex.
#@Nicolas Le Novère
#t2001
#cBioinformatics
#index765254
#% 
#!
  
#*STOCHSIM: modelling of stochastic biomolecular processes.
#@Nicolas Le Novère,Thomas Simon Shimizu
#t2001
#cBioinformatics
#index765255
#% 
#!
  
#*Gene recognition in eukaryotic DNA by comparison of genomic sequences.
#@Pavel S. Novichkov,Mikhail S. Gelfand,Andrey A. Mironov
#t2001
#cBioinformatics
#index765256
#% 
#!
  
#*MedScan, a natural language processing engine for MEDLINE abstracts.
#@Svetlana Novichkova,Sergei Egorov,Nikolai Daraselia
#t2003
#cBioinformatics
#index765257
#% 
#!
  
#*Statistical evaluation and comparison of a pairwise alignment algorithm that a priori assigns the number of gaps rather than employing gap penalties.
#@Yasuyuki Nozaki,Matthew I. Bellgard
#t2005
#cBioinformatics
#index765258
#% 
#!
  
#*S-SPatt: simple statistics for patterns on Markov chains.
#@Grégory Nuel
#t2005
#cBioinformatics
#index765259
#% 
#!
  
#*Statistical analysis of domains in interacting protein pairs.
#@Tom M. W. Nye,Carlo Berzuini,Walter R. Gilks,M. Madan Babu,Sarah A. Teichmann
#t2005
#cBioinformatics
#index765262
#% 
#!
  
#*A novel algorithm and web-based tool for comparing two alternative phylogenetic trees.
#@Tom M. W. Nye,Pietro Liò,Walter R. Gilks
#t2006
#cBioinformatics
#index765263
#% 
#!
  
#*Empirical estimation of the reliability of ribosomal RNA alignments.
#@Emmet A. O'Brien,Desmond G. Higgins
#t1998
#cBioinformatics
#index765264
#% 
#!
  
#*Optimization of ribosomal RNA profile alignments.
#@Emmet A. O'Brien,Cédric Notredame,Desmond G. Higgins
#t1998
#cBioinformatics
#index765265
#% 
#!
  
#*Athena: a resource for rapid visualization and systematic analysis of promoter sequences.
#@Timothy R. O'Connor,Curtis E. Dyreson,John J. Wyrick
#t2005
#cBioinformatics
#index765266
#% 
#!
  
#*The SRS 3D module: integrating structures, sequences and features.
#@Seán I. O'Donoghue,Joachim E. W. Meyer,Andrea Schafferhans,Karsten Fries
#t2004
#cBioinformatics
#index765268
#% 
#!
  
#*Removing redundancy in SWISS-PROT and TrEMBL.
#@Claire O'Donovan,Maria Jesus Martin,Eric Glémet,Jean-Jacques Codani,Rolf Apweiler
#t1999
#cBioinformatics
#index765269
#% 
#!
  
#*Non-additivity in protein-DNA binding.
#@Ruadhan A. O'Flanagan,Guillaume Paillard,Richard Lavery,Anirvan M. Sengupta
#t2005
#cBioinformatics
#index765270
#% 
#!
  
#*A Bayesian missing value estimation method for gene expression profile data.
#@Shigeyuki Oba,Masa-aki Sato,Ichiro Takemasa,Morito Monden,Ken-ichi Matsubara,Shin Ishii
#t2003
#cBioinformatics
#index765272
#% 
#!
  
#*SDMinP: a program to control the family wise error rate using step-down minP adjusted -values.
#@M. Obreiter,C. Fischer,J. Chang-Claude,L. Beckmann
#t2005
#cBioinformatics
#index765273
#% 
#!
  
#*Advanced pairwise structure alignments of proteins and analysis of conformational changes.
#@Maria Elena Ochagavia,Jean Richelle,Shoshana J. Wodak
#t2002
#cBioinformatics
#index765274
#% 
#!
  
#*Developing a move-set for protein model refinement.
#@Marc N. Offman,Paul W. Fitzjohn,Paul A. Bates
#t2006
#cBioinformatics
#index765275
#% 
#!
  
#*OWEN: aligning long collinear regions of genomes.
#@Aleksey Y. Ogurtsov,Mikhail A. Roytberg,Svetlana A. Shabalina,Alexey S. Kondrashov
#t2002
#cBioinformatics
#index765276
#% 
#!
  
#*Analysis of internal loops within the RNA secondary structure in almost quadratic time.
#@Aleksey Y. Ogurtsov,Svetlana A. Shabalina,Alexey S. Kondrashov,Mikhail A. Roytberg
#t2006
#cBioinformatics
#index765277
#% 
#!
  
#*Bio-Object, a stochastic simulator for post-transcriptional regulation.
#@Nobukazu Ohki,Masatoshi Hagiwara
#t2005
#cBioinformatics
#index765278
#% 
#!
  
#*Interpolated markov chains for eukaryotic promoter recognition.
#@Uwe Ohler,Stefan Harbeck,Heinrich Niemann,Elmar Nöth,Martin G. Reese
#t1999
#cBioinformatics
#index765279
#% 
#!
  
#*Arby: automatic protein structure prediction using profile-profile alignment and confidence measures.
#@Niklas von Öhsen,Ingolf Sommer,Ralf Zimmer,Thomas Lengauer
#t2004
#cBioinformatics
#index765280
#% 
#!
  
#*Taverna: a tool for the composition and enactment of bioinformatics workflows.
#@Thomas M. Oinn,Matthew Addis,Justin Ferris,Darren Marvin,Martin Senger,R. Mark Greenwood,Tim Carver,Kevin Glover,Matthew R. Pocock,Anil Wipat,Peter Li
#t2004
#cBioinformatics
#index765281
#% 
#!
  
#*Characteristic Substructures and Properties in Chemical Carcinogens Studied by the Cascade Model.
#@Takashi Okada
#t2003
#cBioinformatics
#index765282
#% 
#!
  
#*Accurate extraction of functional associations between proteins based on common interaction partners and common domains.
#@Kinya Okada,Shigehiko Kanaya,Kiyoshi Asai
#t2005
#cBioinformatics
#index765283
#% 
#!
  
#*Formal design and implementation of an improved DDBJ DNA database with a new schema and object-oriented library.
#@Toshitsugu Okayama,Takuro Tamura,Takashi Gojobori,Yoshio Tateno,Kazuho Ikeo,Satoru Miyazaki,Kaoru Fukami-Kobayashi,Hideaki Sugawara
#t1998
#cBioinformatics
#index765284
#% 
#!
  
#*An integrated genetic data environment (GDE)-based LINUX interface for analysis of HIV-1 and other microbial sequences.
#@T. De Oliveira,R. Miller,M. Tarin,S. Cassol
#t2003
#cBioinformatics
#index765285
#% 
#!
  
#*SEGMENT: identifying compositional domains in DNA sequences.
#@José L. Oliver,Ramón Román-Roldán,Javier Pérez,Pedro Bernaola-Galván
#t1999
#cBioinformatics
#index765287
#% 
#!
  
#*Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW.
#@Timothy F. Oliver,Bertil Schmidt,Darran Nathan,Ralf Clemens,Douglas L. Maskell
#t2005
#cBioinformatics
#index765288
#% 
#!
  
#*Modelling cellular systems with PySCeS.
#@Brett G. Olivier,Johann M. Rohwer,Jan-Hendrik S. Hofmeyr
#t2005
#cBioinformatics
#index765289
#% 
#!
  
#*Web-based kinetic modelling using JWS Online.
#@Brett G. Olivier,Jacky L. Snoep
#t2004
#cBioinformatics
#index765290
#% 
#!
  
#*CVD: the intestinal crypt/villus in situ hybridization database.
#@Line Olsen,Morten Hansen,Claus Thorn Ekstrøm,Jesper T. Troelsen,Jørgen Olsen
#t2004
#cBioinformatics
#index765292
#% 
#!
  
#*Deriving quantitative conclusions from microarray expression data.
#@Adam B. Olshen,Ajay N. Jain
#t2002
#cBioinformatics
#index765294
#% 
#!
  
#*Transcription/replication collisions cause bacterial transcription units to be longer on the leading strand of replication.
#@Nicolas Omont,François Képès
#t2004
#cBioinformatics
#index765296
#% 
#!
  
#*Automated extraction of information on protein-protein interactions from the biological literature.
#@Toshihide Ono,Haretsugu Hishigaki,Akira Tanigami,Toshihisa Takagi
#t2001
#cBioinformatics
#index765297
#% 
#!
  
#*Genetic algorithms applied to multi-class prediction for the analysis of gene expression data.
#@C. H. Ooi,Patrick Tan
#t2003
#cBioinformatics
#index765298
#% 
#!
  
#*Self-organization and competition in the immune response to cancer invasion: a phase-orientated computational model of oncogenesis.
#@Sorinel Adrian Oprisan,Aurel Ardelean,Petre T. Frangopol
#t2000
#cBioinformatics
#index765299
#% 
#!
  
#*PIVOT: Protein Interacions VisualizatiOn Tool.
#@Nir Orlev,Ron Shamir,Yosef Shiloh
#t2004
#cBioinformatics
#index765300
#% 
#!
  
#*A method for estimating stochastic noise in large genetic regulatory networks.
#@David Orrell,Stephen Ramsey,Pedro de Atauri,Hamid Bolouri
#t2005
#cBioinformatics
#index765304
#% 
#!
  
#*YETI: Yeast Exploration Tool Integrator.
#@Richard J. Orton,William I. Sellers,Dietlind L. Gerloff
#t2004
#cBioinformatics
#index765306
#% 
#!
  
#*GBPM: GRID-based pharmacophore model: concept and application studies to protein-protein recognition.
#@Francesco Ortuso,Thierry Langer,Stefano Alcaro
#t2006
#cBioinformatics
#index765307
#% 
#!
  
#*Analysis of base-pairing potentials between 16S rRNA and 5' UTR for translation initiation in various prokaryotes.
#@Y. Osada,Rintaro Saito,Masaru Tomita
#t1999
#cBioinformatics
#index765308
#% 
#!
  
#*Comparative analysis of methods for representing and searching for transcription factor binding sites.
#@Robert Osada,Elena Zaslavsky,Mona Singh
#t2004
#cBioinformatics
#index765309
#% 
#!
  
#*Superiority of network motifs over optimal networks and an application to the revelation of gene network evolution.
#@Sascha Ott,Annika Hansen,SunYong Kim,Satoru Miyano
#t2005
#cBioinformatics
#index765312
#% 
#!
  
#*A bioinformatic strategy to rapidly characterize cDNA libraries.
#@G. Charles Ostermeier,David J. Dix,Stephen A. Krawetz
#t2002
#cBioinformatics
#index765313
#% 
#!
  
#*A divide-and-conquer approach to fragment assembly.
#@Hasan H. Otu,Khalid Sayood
#t2003
#cBioinformatics
#index765314
#% 
#!
  
#*A new sequence distance measure for phylogenetic tree construction.
#@Hasan H. Otu,Khalid Sayood
#t2003
#cBioinformatics
#index765315
#% 
#!
  
#*Gaussian mixture clustering and imputation of microarray data.
#@Ming Ouyang,William J. Welsh,Panos Georgopoulos
#t2004
#cBioinformatics
#index765316
#% 
#!
  
#*Two or three myths about bioinformatics.
#@Christos A. Ouzounis
#t2000
#cBioinformatics
#index765317
#% 
#!
  
#*Bioinformatics and the theoretical foundations of molecular biology.
#@Christos A. Ouzounis
#t2002
#cBioinformatics
#index765318
#% 
#!
  
#*Early bioinformatics: the birth of a discipline - a personal view.
#@Christos A. Ouzounis,Alfonso Valencia
#t2003
#cBioinformatics
#index765319
#% 
#!
  
#*Extraction of knowledge on protein-protein interaction by association rule discovery.
#@T. Oyama,K. Kitano,Kenji Satou,T. Ito
#t2002
#cBioinformatics
#index765321
#% 
#!
  
#*ColorHOR-novel graphical algorithm for fast scan of alpha satellite higher-order repeats and HOR annotation for GenBank sequence of human genome.
#@Vladimir Paar,Nenad Pavin,Marija Rosandic,Matko Gluncic,Ivan Basar,Robert Pezer,Sonja Durajlija Zinic
#t2005
#cBioinformatics
#index765322
#% 
#!
  
#*Circles: automating the comparative analysis of RNA secondary structure.
#@Roderic D. M. Page
#t2000
#cBioinformatics
#index765323
#% 
#!
  
#*GeneTree: comparing gene and species phylogenies using reconciled trees.
#@Roderic D. M. Page
#t1998
#cBioinformatics
#index765326
#% 
#!
  
#*The MIPS mammalian protein?Cprotein interaction database.
#@Philipp Pagel,Stefan Kovac,Matthias Oesterheld,Barbara Brauner,Irmtraud Dunger-Kaltenbach,Goar Frishman,Corinna Montrone,Pekka Mark,Volker Stümpflen,Hans-Werner Mewes,Andreas Ruepp,Dmitrij Frishman
#t2005
#cBioinformatics
#index765327
#% 
#!
  
#*The DIMA web resource - exploring the protein domain network.
#@Philipp Pagel,Matthias Oesterheld,Volker Stümpflen,Dmitrij Frishman
#t2006
#cBioinformatics
#index765328
#% 
#!
  
#*COPS - Cis/trans peptide bond conformation prediction of amino acids on the basis of secondary structure information.
#@Doreen Pahlke,Dietmar Leitner,Urs Wiedemann,Dirk Labudde
#t2005
#cBioinformatics
#index765329
#% 
#!
  
#*Intervention in context-sensitive probabilistic Boolean networks.
#@Ranadip Pal,Aniruddha Datta,Michael L. Bittner,Edward R. Dougherty
#t2005
#cBioinformatics
#index765330
#% 
#!
  
#*Boolean relationships among genes responsive to ionizing radiation in the NCI 60 ACDS.
#@Ranadip Pal,Aniruddha Datta,Albert J. Fornace,Michael L. Bittner,Edward R. Dougherty
#t2005
#cBioinformatics
#index765331
#% 
#!
  
#*Generating Boolean networks with a prescribed attractor structure.
#@Ranadip Pal,Ivan Ivanov,Aniruddha Datta,Michael L. Bittner,Edward R. Dougherty
#t2005
#cBioinformatics
#index765332
#% 
#!
  
#*An intelligent biological information management system.
#@Mathew J. Palakal,Snehasis Mukhopadhyay,Javed Mostafa,Rajeev R. Raje,Mathias N'Cho,Santosh Mishra
#t2002
#cBioinformatics
#index765333
#%1120235
#%3006933
#!
  
#*OMGProm: a database of orthologous mammalian gene promoters.
#@Saranyan K. Palaniswamy,Victor X. Jin,Hao Sun,Ramana V. Davuluri
#t2005
#cBioinformatics
#index765334
#% 
#!
  
#*Evaluation of computational metabolic-pathway predictions for Helicobacter pylori.
#@Suzanne M. Paley,Peter D. Karp
#t2002
#cBioinformatics
#index765335
#% 
#!
  
#*Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data.
#@Fei Pan,Kiran Kamath,Kangyu Zhang,Sudip Pulapura,Avinash Achar,Juan Nunez-Iglesias,Yu Huang,Xifeng Yan,Jiawei Han,Haiyan Hu,Min Xu,Jianjun Hu,Xianghong Jasmine Zhou
#t2006
#cBioinformatics
#index765336
#% 
#!
  
#*SynBrowse: a synteny browser for comparative sequence analysis.
#@Xiaokang Pan,Lincoln Stein,Volker Brendel
#t2005
#cBioinformatics
#index765337
#% 
#!
  
#*Comparative analysis of protein unfoldedness in human housekeeping and non-housekeeping proteins.
#@Neeraj Pandey,Mythily Ganapathi,Kaushal Kumar,Dipayan Dasgupta,Sushanta Kumar Das Sutar,Debasis Dash
#t2004
#cBioinformatics
#index765338
#% 
#!
  
#*Pathway Miner: extracting gene association networks from molecular pathways for predicting the biological significance of gene expression microarray data.
#@Ritu Pandey,Raghavendra K. Guru,David W. Mount
#t2004
#cBioinformatics
#index765339
#% 
#!
  
#*Computational, experimental analysis reveals a novel Src family kinase in the C. elegans genome.
#@Akhilesh Pandey,Suraj Peri,Colin Thacker,Chery A. Whipple,John J. Collins,Matthias Mann
#t2003
#cBioinformatics
#index765340
#% 
#!
  
#*Pathway analysis using random forests classification and regression.
#@Herbert Pang,Aiping Lin,Matthew Holford,Bradley E. Enerson,Bin Lu,Michael P. Lawton,Eugenia Floyd,Hongyu Zhao
#t2006
#cBioinformatics
#index765344
#% 
#!
  
#*Comparison of different melting temperature calculation methods for short DNA sequences .
#@Alejandro Panjkovich,Francisco Melo
#t2005
#cBioinformatics
#index765345
#% 
#!
  
#*Modeling and simulation of cancer immunoprevention vaccine.
#@Francesco Pappalardo,Pierluigi Lollini,Filippo Castiglione,Santo Motta
#t2005
#cBioinformatics
#index765351
#% 
#!
  
#*Zerg: A Very Fast BLAST Parser Library.
#@Apuã C. M. Paquola,Abimael A. Machado,Eduardo M. Reis,Aline Maria da Silva,Sergio Verjovski-Almeida
#t2003
#cBioinformatics
#index765352
#% 
#!
  
#*ESTWeb: bioinformatics services for EST sequencing projects.
#@Apuã C. M. Paquola,Milton Y. Nishyiama Jr.,Eduardo M. Reis,Aline Maria da Silva,Sergio Verjovski-Almeida
#t2003
#cBioinformatics
#index765353
#% 
#!
  
#*APE: Analyses of Phylogenetics and Evolution in R language.
#@Emmanuel Paradis,Julien Claude,Korbinian Strimmer
#t2004
#cBioinformatics
#index765354
#% 
#!
  
#*SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.
#@Dimitris Paraskevis,Koen Deforche,Philippe Lemey,G. Magiorkinis,A. Hatzakis,Anne-Mieke Vandamme
#t2005
#cBioinformatics
#index765355
#% 
#!
  
#*Analysis of DNA curvature using artificial neural networks.
#@Rupali V. Parbhane,Sanjeev S. Tambe,Bhaskar D. Kulkarni
#t1998
#cBioinformatics
#index765356
#% 
#!
  
#*GSMA: software implementation of the genome search meta-analysis method.
#@Fabio Pardi,Douglas F. Levinson,Cathryn M. Lewis
#t2005
#cBioinformatics
#index765357
#% 
#!
  
#*STRING: finding tandem repeats in DNA sequences.
#@Valerio Parisi,Valeria De Fonzo,Filippo Aluffi-Pentini
#t2003
#cBioinformatics
#index765358
#% 
#!
  
#*Comparing expression profiles of genes with similar promoter regions.
#@Peter J. Park,Atul J. Butte,Isaac S. Kohane
#t2002
#cBioinformatics
#index765359
#% 
#!
  
#*Estimating the significance of sequence order in protein secondary structure and prediction.
#@Jong Park,Sabine Dietmann,Andreas Heger,Liisa Holm
#t2000
#cBioinformatics
#index765360
#% 
#!
  
#*Discrimination of outer membrane proteins using support vector machines.
#@Keun-Joon Park,M. Michael Gromiha,Paul Horton,Makiko Suwa
#t2005
#cBioinformatics
#index765361
#% 
#!
  
#*Sequence search algorithm assessment and testing toolkit (SAT).
#@Jong Park,Liisa Holm,Cyrus Chothia
#t2000
#cBioinformatics
#index765362
#% 
#!
  
#*RSDB: representative protein sequence databases have high information content.
#@Jong Park,Liisa Holm,Andreas Heger,Cyrus Chothia
#t2000
#cBioinformatics
#index765363
#% 
#!
  
#*Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs.
#@Keun-Joon Park,Minoru Kanehisa
#t2003
#cBioinformatics
#index765364
#% 
#!
  
#*Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map).
#@Daeui Park,Semin Lee,Dan M. Bolser,Michael Schroeder,Michael Lappe,Donghoon Oh,Jong Bhak
#t2005
#cBioinformatics
#index765365
#% 
#!
  
#*GOChase: correcting errors from Gene Ontology-based annotations for gene products.
#@Yu Rang Park,Chan Hee Park,Ju Han Kim
#t2005
#cBioinformatics
#index765366
#% 
#!
  
#*The correlation error and finite-size correction in an ungapped sequence alignment.
#@Yonil Park,John L. Spouge
#t2002
#cBioinformatics
#index765367
#% 
#!
  
#*DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins.
#@Jong Park,Sarah A. Teichmann
#t1998
#cBioinformatics
#index765368
#% 
#!
  
#*Statistical tests for identifying differentially expressed genes in time-course microarray experiments.
#@Taesung Park,Sung-Gon Yi,Seungmook Lee,Seung Yeoun Lee,Dong-Hyun Yoo,Jun-Ik Ahn,Yong-Sung Lee
#t2003
#cBioinformatics
#index765369
#% 
#!
  
#*Combining multiple microarrays in the presence of controlling variables.
#@Taesung Park,Sung-Gon Yi,Young Kee Shin,Seung Yeoun Lee
#t2006
#cBioinformatics
#index765370
#% 
#!
  
#*PartiGene-constructing partial genomes.
#@John Parkinson,Alasdair Anthony,James Wasmuth,Ralf Schmid,Ann Hedley,Mark L. Blaxter
#t2004
#cBioinformatics
#index765371
#% 
#!
  
#*SimiTri-visualizing similarity relationships for groups of sequences.
#@John Parkinson,Mark L. Blaxter
#t2003
#cBioinformatics
#index765372
#% 
#!
  
#*Visualizations for taxonomic and phylogenetic trees.
#@Cynthia Sims Parr,Bongshin Lee,Dana Campbell,Benjamin B. Bederson
#t2004
#cBioinformatics
#index765374
#% 
#!
  
#*JESAM: CORBA software components to create and publish EST alignments and clusters.
#@J. D. Parsons,Patricia Rodriguez-Tomé
#t2000
#cBioinformatics
#index765381
#% 
#!
  
#*Gene fusion/fission is a major contributor to evolution of multi-domain bacterial proteins.
#@Sophie Pasek,Jean-Loup Risler,Pierre Brézellec
#t2006
#cBioinformatics
#index765387
#% 
#!
  
#*THEA: ontology-driven analysis of microarray data.
#@Claude Pasquier,F. Girardot,K. Jevardat de Fombelle,R. Christen
#t2004
#cBioinformatics
#index765388
#% 
#!
  
#*A web server to locate periodicities in a sequence.
#@C. M. Pasquier,Vassilis J. Promponas,N. J. Varvayannis,Stavros J. Hamodrakas
#t1998
#cBioinformatics
#index765389
#% 
#!
  
#*delta rho-Web, an online tool to assess composition similarity of individual nucleic acid sequences.
#@M. W. J. van Passel,A. C. M. Luyf,Antoine H. C. van Kampen,A. Bart,A. van der Ende
#t2005
#cBioinformatics
#index765390
#% 
#!
  
#*Prediction of viable circular permutants using a graph theoretic approach.
#@Konrad H. Paszkiewicz,Michael J. E. Sternberg,Michael Lappe
#t2006
#cBioinformatics
#index765392
#% 
#!
  
#*Conceptual modelling of genomic information.
#@Norman W. Paton,Shakeel A. Khan,Andrew Hayes,Fouzia Moussouni,Andy Brass,Karen Eilbeck,Carole A. Goble,Simon J. Hubbard,Stephen G. Oliver
#t2000
#cBioinformatics
#index765393
#% 
#!
  
#*DNAssist: the integrated editing and analysis of molecular biology sequences in Windows.
#@Hugh-G. Patterton,Steven Graves
#t2000
#cBioinformatics
#index765394
#% 
#!
  
#*The effect of replication on gene expression microarray experiments.
#@Paul Pavlidis,Qinghong Li,William Stafford Noble
#t2003
#cBioinformatics
#index765395
#% 
#!
  
#*Matrix2png: a utility for visualizing matrix data.
#@Paul Pavlidis,William Stafford Noble
#t2003
#cBioinformatics
#index765396
#% 
#!
  
#*Support vector machine classification on the web.
#@Paul Pavlidis,Ilan Wapinski,William Stafford Noble
#t2004
#cBioinformatics
#index765397
#% 
#!
  
#*A Bayesian framework for combining gene predictions.
#@Vladimir Pavlovic,Ashutosh Garg,Simon Kasif
#t2002
#cBioinformatics
#index765398
#% 
#!
  
#*Evaluation of gene prediction software using a genomic data set: application to <$O_SSF>Arabidopsis thaliana<$C_SSF>sequences.
#@Nathalie Pavy,Stephane Rombauts,Patrice Déhais,Catherine Mathé,Ramana V. Davuluri,Philippe Leroy,Pierre Rouzé
#t1999
#cBioinformatics
#index765399
#% 
#!
  
#*False discovery rate, sensitivity and sample size for microarray studies.
#@Yudi Pawitan,Stefan Michiels,Serge Koscielny,Arief Gusnanto,Alexander Ploner
#t2005
#cBioinformatics
#index765400
#% 
#!
  
#*Bias in the estimation of false discovery rate in microarray studies.
#@Yudi Pawitan,Karuturi R. Krishna Murthy,Stefan Michiels,Alexander Ploner
#t2005
#cBioinformatics
#index765401
#% 
#!
  
#*APART: Automated Preprocessing for NMR Assignments with Reduced Tedium.
#@Norma H. Pawley,Jason D. Gans,Ryszard Michalczyk
#t2005
#cBioinformatics
#index765402
#% 
#!
  
#*Phylogeny-independent detection of functional residues.
#@Florencio Pazos,Antonio Rausell,Alfonso Valencia
#t2006
#cBioinformatics
#index765405
#% 
#!
  
#*A platform for integrating threading results with protein family analyses.
#@Florencio Pazos,Burkhard Rost,Alfonso Valencia
#t1999
#cBioinformatics
#index765406
#% 
#!
  
#*Training for bioinformatics and computational biology.
#@William R. Pearson
#t2001
#cBioinformatics
#index765407
#% 
#!
  
#*ORIOGEN: order restricted inference for ordered gene expression data.
#@Shyamal D. Peddada,Shawn F. Harris,J. Zajd,E. Harvey
#t2005
#cBioinformatics
#index765409
#% 
#!
  
#*Gene Selection and Clustering for Time-course and Dose-response Microarray Experiments Using Order-restricted Inference.
#@Shyamal D. Peddada,Edward K. Lobenhofer,Leping Li,Cynthia A. Afshari,Clarice R. Weinberg,David M. Umbach
#t2003
#cBioinformatics
#index765410
#% 
#!
  
#*Gene finding with a hidden Markov model of genome structure and evolution.
#@Jakob Skou Pedersen,Jotun Hein
#t2003
#cBioinformatics
#index765411
#% 
#!
  
#*Shotgun: getting more from sequence similarity searches.
#@Scott C.-H. Pegg,Patricia C. Babbitt
#t1999
#cBioinformatics
#index765415
#% 
#!
  
#*Intersect: identification and visualization of overlaps in database search results.
#@Scott C.-H. Pegg,Walter R. P. Novak,Patricia C. Babbitt
#t2003
#cBioinformatics
#index765416
#% 
#!
  
#*Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
#@Jimin Pei,Wei Cai,Lisa N. Kinch,Nick V. Grishin
#t2006
#cBioinformatics
#index765417
#% 
#!
  
#*AL2CO: calculation of positional conservation in a protein sequence alignment.
#@Jimin Pei,Nick V. Grishin
#t2001
#cBioinformatics
#index765418
#% 
#!
  
#*PCMA: fast and accurate multiple sequence alignment based on profile consistency.
#@Jimin Pei,Ruslan Sadreyev,Nick V. Grishin
#t2003
#cBioinformatics
#index765419
#% 
#!
  
#*About the use of protein models.
#@Manuel C. Peitsch
#t2002
#cBioinformatics
#index765420
#% 
#!
  
#*A case study of high-throughput biological data processing on parallel platforms.
#@Dmitry Pekurovsky,Ilya N. Shindyalov,Philip E. Bourne
#t2004
#cBioinformatics
#index765421
#% 
#!
  
#*Modelling biological processes using workflow and Petri Net models.
#@Mor Peleg,Iwei Yeh,Russ B. Altman
#t2002
#cBioinformatics
#index765422
#% 
#!
  
#*Identification of a novel putative mitogen-activated kinase cascade on human chromosome 21 by computational approaches.
#@Marialuisa Pellegrini-Calace,Anna Tramontano
#t2006
#cBioinformatics
#index765423
#% 
#!
  
#*simuPOP: a forward-time population genetics simulation environment.
#@Bo Peng,Marek Kimmel
#t2005
#cBioinformatics
#index765424
#% 
#!
  
#*A geometric algorithm to find small but highly similar 3D substructures in proteins.
#@Xavier Pennec,Nicholas Ayache
#t1998
#cBioinformatics
#index765425
#% 
#!
  
#*LogoBar: bar graph visualization of protein logos with gaps.
#@Åsa Pérez-Bercoff,Johan Koch,Thomas R. Bürglin
#t2006
#cBioinformatics
#index765428
#% 
#!
  
#*Multiple association analysis via simulated annealing (MASSA).
#@Miguel Pérez-Enciso
#t2006
#cBioinformatics
#index765429
#% 
#!
  
#*Qxpak: a versatile mixed model application for genetical genomics and QTL analyses.
#@Miguel Pérez-Enciso,I. Misztal
#t2004
#cBioinformatics
#index765430
#% 
#!
  
#*Gene annotation from scientific literature using mappings between keyword systems.
#@Antonio Jesús Pérez,Carolina Perez-Iratxeta,Peer Bork,Guillermo Thode,Miguel A. Andrade
#t2004
#cBioinformatics
#index765431
#% 
#!
  
#*AnaGram: protein function assignment.
#@Antonio Jesús Pérez,Guillermo Thode,Oswaldo Trelles
#t2004
#cBioinformatics
#index765432
#% 
#!
  
#*Finding the common structure shared by two homologous RNAs.
#@Olivier Perriquet,Hélène Touzet,Max Dauchet
#t2003
#cBioinformatics
#index765438
#% 
#!
  
#*TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.
#@Geo Pertea,Xiaoqiu Huang,Feng Liang,Valentin Antonescu,Razvan Sultana,Svetlana Karamycheva,Yuandan Lee,Joseph White,Foo Cheung,Babak Parvizi,Jennifer Tsai,John Quackenbush
#t2003
#cBioinformatics
#index765439
#% 
#!
  
#*Segmentation of yeast DNA using hidden Markov models.
#@Leonid Peshkin,Mikhail S. Gelfand
#t1999
#cBioinformatics
#index765440
#% 
#!
  
#*PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance.
#@Graziano Pesole,Sabino Liuni,Mark D'Souza
#t2000
#cBioinformatics
#index765441
#% 
#!
  
#*Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules.
#@Björn Peters,Weiwei Tong,John Sidney,Alessandro Sette,Zhiping Weng
#t2003
#cBioinformatics
#index765442
#% 
#!
  
#*The predictive power of the CluSTr database.
#@Robert Petryszak,Ernst Kretschmann,Daniela Wieser,Rolf Apweiler
#t2005
#cBioinformatics
#index765449
#% 
#!
  
#*GOLDsurfer: three dimensional display of linkage disequilibrium.
#@Fredrik Pettersson,Oskar Jonsson,Lon R. Cardon
#t2004
#cBioinformatics
#index765450
#% 
#!
  
#*Simulation tools for biochemical networks: evaluation of performance and usability.
#@Antti Pettinen,Tommi Aho,Olli-Pekka Smolander,Tiina Manninen,Antti Saarinen,Kaisa-Leena Taattola,Olli Yli-Harja,Marja-Leena Linne
#t2005
#cBioinformatics
#index765451
#% 
#!
  
#*Improving sequence-based fold recognition by using 3D model quality assessment.
#@Chris S. Pettitt,Liam J. McGuffin,David T. Jones
#t2005
#cBioinformatics
#index765452
#% 
#!
  
#*Educating biologists in the 21st century: bioinformatics scientists versus bioinformatics technicians.
#@Pavel A. Pevzner
#t2004
#cBioinformatics
#index765453
#% 
#!
  
#*METATOOL: for studying metabolic networks.
#@Thomas Pfeiffer,Ignacio Sánchez-Valdenebro,Juan Carlos Nuño,Francisco Montero,Stefan Schuster
#t1999
#cBioinformatics
#index765455
#% 
#!
  
#*Extraction of fluorescent cell puncta by adaptive fuzzy segmentation.
#@Tuan D. Pham,Denis I. Crane,Tuan H. Tran,Tam H. Nguyen
#t2004
#cBioinformatics
#index765456
#% 
#!
  
#*A probabilistic measure for alignment-free sequence comparison.
#@Tuan D. Pham,Johannes Zuegg
#t2004
#cBioinformatics
#index765457
#% 
#!
  
#*Dealing with errors in interactive sequencing by hybridization.
#@Vinhthuy T. Phan,Steven Skiena
#t2001
#cBioinformatics
#index765458
#% 
#!
  
#*Light-weight integration of molecular biological databases.
#@Stephan Philippi
#t2004
#cBioinformatics
#index765459
#% 
#!
  
#*Regression trees for regulatory element identification.
#@Tu Minh Phuong,Doheon Lee,Kwang Hyung Lee
#t2004
#cBioinformatics
#index765460
#% 
#!
  
#*INTERALIGN: interactive alignment editor for distantly related protein sequences.
#@Olivier Pible,Gilles Imbert,Jean-Luc Pellequer
#t2005
#cBioinformatics
#index765461
#% 
#!
  
#*Intergenic sequence inspector: searching and identifying bacterial RNAs.
#@Christophe Pichon,Brice Felden
#t2003
#cBioinformatics
#index765462
#% 
#!
  
#*Transcription regulatory region analysis using signal detection and fuzzy clustering.
#@L. Pickert,Ingmar Reuter,Frank Klawonn,Edgar Wingender
#t1998
#cBioinformatics
#index765463
#% 
#!
  
#*The Small-world Dynamics of Tree Networks and Data Mining in Phyloinformatics.
#@William H. Piel,Michael J. Sanderson,Michael J. Donoghue
#t2003
#cBioinformatics
#index765464
#% 
#!
  
#*ArrayNorm: comprehensive normalization and analysis of microarray data.
#@Roland Pieler,Fatima Sanchez-Cabo,Hubert Hackl,Gerhard G. Thallinger,Zlatko Trajanoski
#t2004
#cBioinformatics
#index765465
#% 
#!
  
#*Combining signals from spotted cDNA microarrays obtained at different scanning intensities.
#@H. P. Piepho,B. Keller,N. Hoecker,F. Hochholdinger
#t2006
#cBioinformatics
#index765467
#% 
#!
  
#*M-ZDOCK: a grid-based approach for C symmetric multimer docking.
#@Brian Pierce,Weiwei Tong,Zhiping Weng
#t2005
#cBioinformatics
#index765468
#% 
#!
  
#*GPSDB: a new database for synonyms expansion of gene and protein names.
#@Violaine Pillet,Marc Zehnder,Alexander K. Seewald,Anne-Lise Veuthey,Johann Petrak
#t2005
#cBioinformatics
#index765469
#% 
#!
  
#*CX, an algorithm that identifies protruding atoms in proteins.
#@Alessandro Pintar,Oliviero Carugo,Sándor Pongor
#t2002
#cBioinformatics
#index765470
#% 
#!
  
#*DPX: for the analysis of the protein core.
#@Alessandro Pintar,Oliviero Carugo,Sándor Pongor
#t2003
#cBioinformatics
#index765471
#% 
#!
  
#*Alignment of metabolic pathways.
#@Ron Y. Pinter,Oleg Rokhlenko,Esti Yeger Lotem,Michal Ziv-Ukelson
#t2005
#cBioinformatics
#index765472
#% 
#!
  
#*Local correlation of expression profiles with gene annotations-proof of concept for a general conciliatory method.
#@Francisco R. Pinto,L. Ashley Cowart,Yusuf A. Hannun,Bärbel Rohrer,Jonas S. Almeida
#t2005
#cBioinformatics
#index765473
#% 
#!
  
#*The Bioinformatics Template Library-generic components for biocomputing.
#@W. R. Pitt,M. A. Williams,M. Steven,B. Sweeney,Alan J. Bleasby,David S. Moss
#t2001
#cBioinformatics
#index765474
#% 
#!
  
#*mILD: a tool for constructing and analyzing matrices of pairwise phylogenetic character incongruence tests.
#@Paul J. Planet,Indra Neil Sarkar
#t2005
#cBioinformatics
#index765475
#% 
#!
  
#*Enhancing instance-based classification with local density: a new algorithm for classifying unbalanced biomedical data.
#@Claudia Plant,Christian Böhm,Bernhard Tilg,Christian Baumgartner
#t2006
#cBioinformatics
#index765476
#% 
#!
  
#*AutoMotif server: prediction of single residue post-translational modifications in proteins.
#@Dariusz Plewczynski,Adrian Tkacz,Lucjan Stanislaw Wyrwicz,Leszek Rychlewski
#t2005
#cBioinformatics
#index765477
#% 
#!
  
#*Ballast: Blast post-processing based on locally conserved segments.
#@Frédéric Plewniak,Julie Dawn Thompson,Olivier Poch
#t2000
#cBioinformatics
#index765478
#% 
#!
  
#*Multidimensional local false discovery rate for microarray studies.
#@Alexander Ploner,Stefano Calza,Arief Gusnanto,Yudi Pawitan
#t2006
#cBioinformatics
#index765479
#% 
#!
  
#*M@CBETH: a microarray classification benchmarking tool.
#@Nathalie Pochet,Frizo A. L. Janssens,Frank De Smet,Kathleen Marchal,Johan A. K. Suykens,Bart De Moor
#t2005
#cBioinformatics
#index765480
#% 
#!
  
#*Systematic benchmarking of microarray data classification: assessing the role of non-linearity and dimensionality reduction.
#@Nathalie Pochet,Frank De Smet,Johan A. K. Suykens,Bart De Moor
#t2004
#cBioinformatics
#index765481
#% 
#!
  
#*A browser for expression data.
#@Matthew R. Pocock,Tim J. P. Hubbard
#t2000
#cBioinformatics
#index765482
#% 
#!
  
#*SPEM: a parser for EMBL style flat file database entries.
#@Matthew R. Pocock,Tim J. P. Hubbard,Ewan Birney
#t1998
#cBioinformatics
#index765483
#% 
#!
  
#*QU-GENE: a simulation platform for quantitative analysis of genetic models.
#@Dean W. Podlich,Mark Cooper
#t1998
#cBioinformatics
#index765484
#% 
#!
  
#*MEDUSA: large scale automatic selection and visual assessment of PCR primer pairs.
#@Raf M. Podowski,Erik L. L. Sonnhammer
#t2001
#cBioinformatics
#index765485
#% 
#!
  
#*Automated discovery of 3D motifs for protein function annotation.
#@Benjamin J. Polacco,Patricia C. Babbitt
#t2006
#cBioinformatics
#index765486
#% 
#!
  
#*Convergent Island Statistics: a fast method for determining local alignment score significance.
#@Aleksandar Poleksic,Joseph F. Danzer,Kevin Hambly,Derek A. Debe
#t2005
#cBioinformatics
#index765487
#% 
#!
  
#*Porter: a new, accurate server for protein secondary structure prediction.
#@Gianluca Pollastri,Aoife McLysaght
#t2005
#cBioinformatics
#index765488
#% 
#!
  
#*MELINA: motif extraction from promoter regions of potentially co-regulated genes.
#@Natalia V. Poluliakh,Toshihisa Takagi,Kenta Nakai
#t2003
#cBioinformatics
#index765489
#% 
#!
  
#*Datamonkey: rapid detection of selective pressure on individual sites of codon alignments.
#@Sergei L. Kosakovsky Pond,Simon D. W. Frost
#t2005
#cBioinformatics
#index765491
#% 
#!
  
#*HyPhy: hypothesis testing using phylogenies.
#@Sergei L. Kosakovsky Pond,Simon D. W. Frost,Spencer V. Muse
#t2005
#cBioinformatics
#index765492
#% 
#!
  
#*CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences.
#@Loïc Ponger,Dominique Mouchiroud
#t2002
#cBioinformatics
#index765493
#% 
#!
  
#*Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins.
#@Mikhail P. Ponomarenko,Julia V. Ponomarenko,Anatoly S. Frolov,Nikolay L. Podkolodny,Ludmila K. Savinkova,Nikolay A. Kolchanov,G. Christian Overton
#t1999
#cBioinformatics
#index765494
#% 
#!
  
#*Oligonucleotide frequency matrices addressed to recognizing functional DNA sites.
#@Mikhail P. Ponomarenko,Julia V. Ponomarenko,Anatoly S. Frolov,Olga A. Podkolodnaya,Denis G. Vorobiev,Nikolay A. Kolchanov,G. Christian Overton
#t1999
#cBioinformatics
#index765495
#% 
#!
  
#*Conformational and physicochemical DNA features specific for transcription factor binding sites.
#@Julia V. Ponomarenko,Mikhail P. Ponomarenko,Anatoly S. Frolov,Denis G. Vorobiev,G. Christian Overton,Nikolay A. Kolchanov
#t1999
#cBioinformatics
#index765496
#% 
#!
  
#*An Adjustable-threshold Algorithm for the Identification of Objects in Three-dimensional Images.
#@Artem L. Ponomarev,Ronald L. Davis
#t2003
#cBioinformatics
#index765497
#% 
#!
  
#*Polymer chromosome models and Monte Carlo simulations of radiation breaking DNA.
#@A. L. Ponomarev,Rainer K. Sachs
#t1999
#cBioinformatics
#index765498
#% 
#!
  
#*NMRb: a web-site repository for raw NMR datasets.
#@Jean-Luc Pons,Therese E. Malliavin,Dominique Tramesel,Marc-André Delsuc
#t2004
#cBioinformatics
#index765499
#% 
#!
  
#*A novel domain suggests a ciliary function for , a brain size determining gene.
#@Chris P. Ponting
#t2006
#cBioinformatics
#index765500
#% 
#!
  
#*GenRGenS: software for generating random genomic sequences and structures.
#@Yann Ponty,Michel Termier,Alain Denise
#t2006
#cBioinformatics
#index765501
#% 
#!
  
#*Zomit: biological data visualization and browsing.
#@Stuart Pook,Guy Vaysseix,Emmanuel Barillot
#t1998
#cBioinformatics
#index765502
#% 
#!
  
#*POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins.
#@Aleksey A. Porollo,Rafal Adamczak,Jaroslaw Meller
#t2004
#cBioinformatics
#index765504
#% 
#!
  
#*Selecting targets for structural determination by navigating in a graph of protein families.
#@Elon Portugaly,Ilona Kifer,Michal Linial
#t2002
#cBioinformatics
#index765506
#% 
#!
  
#*MODELTEST: testing the model of DNA substitution.
#@David Posada,Keith A. Crandall
#t1998
#cBioinformatics
#index765507
#% 
#!
  
#*TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees.
#@David Posada,Taylor J. Maxwell,Alan R. Templeton
#t2005
#cBioinformatics
#index765508
#% 
#!
  
#*Simulating haplotype blocks in the human genome.
#@David Posada,Carsten Wiuf
#t2003
#cBioinformatics
#index765509
#% 
#!
  
#*Improving false discovery rate estimation.
#@Stan Pounds,Cheng Cheng
#t2004
#cBioinformatics
#index765511
#% 
#!
  
#*Sample size determination for the false discovery rate.
#@Stan Pounds,Cheng Cheng
#t2005
#cBioinformatics
#index765512
#% 
#!
  
#*Robust estimation of the false discovery rate.
#@Stan Pounds,Cheng Cheng
#t2006
#cBioinformatics
#index765513
#% 
#!
  
#*Estimating the Occurrence of False Positives and False Negatives in Microarray Studies by Approximating and Partitioning the Empirical Distribution of P-values.
#@Stan Pounds,Stephan W. Morris
#t2003
#cBioinformatics
#index765514
#% 
#!
  
#*Reconstruction of gene networks using Bayesian learning and manipulation experiments.
#@Iosifina Pournara,Lorenz Wernisch
#t2004
#cBioinformatics
#index765515
#% 
#!
  
#*A database for management of gene expression data in situ.
#@Ekaterina Poustelnikova,Andrei Pisarev,Maxim Blagov,Maria Samsonova,John Reinitz
#t2004
#cBioinformatics
#index765516
#% 
#!
  
#*Thermodynamic database for protein-nucleic acid interactions (ProNIT).
#@Ponraj Prabakaran,Jianghong An,M. Michael Gromiha,Samuel Selvaraj,Hatsuho Uedaira,Hidetoshi Kono,Akinori Sarai
#t2001
#cBioinformatics
#index765517
#% 
#!
  
#*CoPS: Comprehensive Peptide Signature Database.
#@Tulika Prakash,Mamta Khandelwal,Dipayan Dasgupta,Debasis Dash,Samir K. Brahmachari
#t2004
#cBioinformatics
#index765518
#% 
#!
  
#*Computational prediction and experimental verification of novel IdeR binding sites in the upstream sequences of Mycobacterium tuberculosis open reading frames.
#@Prachee Prakash,Sailu Yellaboina,Akash Ranjan,Seyed Ehetsham Hasnain
#t2005
#cBioinformatics
#index765519
#% 
#!
  
#*Consensus alignment for reliable framework prediction in homology modeling.
#@Jahnavi C. Prasad,Stephen R. Comeau,Sandor Vajda,Carlos J. Camacho
#t2003
#cBioinformatics
#index765520
#% 
#!
  
#*Detection of hydrogen-bond signature patterns in protein families.
#@Tejasvini Prasad,M. N. Prathima,Nagasuma Chandra
#t2003
#cBioinformatics
#index765521
#% 
#!
  
#*Homonyms and synonyms in the Dictionary of Interfaces in Proteins (DIP).
#@Robert Preissner,Andrean Goede,Cornelius Frömmel
#t1999
#cBioinformatics
#index765522
#% 
#!
  
#*A systematic comparison and evaluation of biclustering methods for gene expression data.
#@Amela Prelic,Stefan Bleuler,Philip Zimmermann,Anja Wille,Peter Bühlmann,Wilhelm Gruissem,Lars Hennig,Lothar Thiele,Eckart Zitzler
#t2006
#cBioinformatics
#index765523
#% 
#!
  
#*Mapping multiple co-sequenced T-DNA integration sites within the Arabidopsis genome.
#@Gernot G. Presting
#t2003
#cBioinformatics
#index765525
#% 
#!
  
#*SNAP: workbench management tool for evolutionary population genetic analysis.
#@Eric W. Price,Ignazio Carbone
#t2005
#cBioinformatics
#index765529
#% 
#!
  
#*Statistical evaluation of pairwise protein sequence comparison with the Bayesian bootstrap.
#@Gavin A. Price,Gavin E. Crooks,Richard E. Green,Steven E. Brenner
#t2005
#cBioinformatics
#index765530
#% 
#!
  
#*Finding coexpressed genes in counts-based data: an improved measure with validation experiments.
#@Morgan N. Price,Eleanor G. Rieffel
#t2004
#cBioinformatics
#index765531
#% 
#!
  
#*BASE: a post-genomic resource for sp. APS.
#@M. Dennis Prickett,Matt Page,Angela E. Douglas,Gavin H. Thomas
#t2006
#cBioinformatics
#index765532
#% 
#!
  
#*Algorithm to find gene expression profiles of deregulation and identify families of disease-altered genes.
#@Carlos Prieto,M. J. Rivas,J. M. Sánchez,J. López-Fidalgo,Javier De Las Rivas
#t2006
#cBioinformatics
#index765533
#% 
#!
  
#*DbW: automatic update of a functional family-specific multiple alignment.
#@Veronique Prigent,Jean-Claude Thierry,Olivier Poch,Frédéric Plewniak
#t2005
#cBioinformatics
#index765534
#% 
#!
  
#*FoldIndex copyright: a simple tool to predict whether a given protein sequence is intrinsically unfolded.
#@Jaime Prilusky,Clifford E. Felder,Tzviya Zeev-Ben-Mordehai,Edwin H. Rydberg,Orna Man,Jacques S. Beckmann,Israel Silman,Joel L. Sussman
#t2005
#cBioinformatics
#index765535
#% 
#!
  
#*GenomeDiagram: a python package for the visualization of large-scale genomic data.
#@Leighton Pritchard,Jennifer A. White,Paul R. J. Birch,Ian K. Toth
#t2006
#cBioinformatics
#index765536
#% 
#!
  
#*WILMA - automated annotation of protein sequences.
#@Andreas Prlic,Francisco S. Domingues,Peter Lackner,Manfred J. Sippl
#t2004
#cBioinformatics
#index765537
#% 
#!
  
#*TRITON: in silico construction of protein mutants and prediction of their activities.
#@Martin Prokop,Jirí Damborský,Jaroslav Koca
#t2000
#cBioinformatics
#index765538
#% 
#!
  
#*CAST: an iterative algorithm for the complexity analysis of sequence tracts.
#@Vassilis J. Promponas,Anton J. Enright,Sophia Tsoka,David P. Kreil,Christophe Leroy,Stavros J. Hamodrakas,Chris Sander,Christos A. Ouzounis
#t2000
#cBioinformatics
#index765539
#% 
#!
  
#*SWAN: sliding window analysis of nucleotide sequence variability.
#@V. Proutski,E. Holmes
#t1998
#cBioinformatics
#index765541
#% 
#!
  
#*Modeling interactome: scale-free or geometric?.
#@Natasa Przulj,Derek G. Corneil,Igor Jurisica
#t2004
#cBioinformatics
#index765543
#% 
#!
  
#*Efficient estimation of graphlet frequency distributions in protein-protein interaction networks.
#@Natasa Przulj,Derek G. Corneil,Igor Jurisica
#t2006
#cBioinformatics
#index765544
#% 
#!
  
#*Functional topology in a network of protein interactions.
#@Natasa Przulj,Dennis A. Wigle,Igor Jurisica
#t2004
#cBioinformatics
#index765545
#% 
#!
  
#*A multiple-feature framework for modelling and predicting transcription factor binding sites.
#@Rainer Pudimat,Ernst Günter Schukat-Talamazzini,Rolf Backofen
#t2005
#cBioinformatics
#index765547
#% 
#!
  
#*PROFcon: novel prediction of long-range contacts.
#@Marco Punta,Burkhard Rost
#t2005
#cBioinformatics
#index765549
#% 
#!
  
#*A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families.
#@Tal Pupko,Itsik Pe'er,Masami Hasegawa,Dan Graur,Nir Friedman
#t2002
#cBioinformatics
#index765550
#% 
#!
  
#*Genetic Power Calculator: design of linkage and association genetic mapping studies of complex traits.
#@Shaun Purcell,Stacey S. Cherny,Pak Chung Sham
#t2003
#cBioinformatics
#index765551
#% 
#!
  
#*Single column discrepancy and dynamic max-mini optimizations for quickly finding the most parsimonious evolutionary trees.
#@Paul Walton Purdom Jr.,Phillip G. Bradford,Koichiro Tamura,Sudhir Kumar
#t2000
#cBioinformatics
#index765552
#% 
#!
  
#*Protein Ligand Database (PLD): additional understanding of the nature and specificity of protein-ligand complexes.
#@Dushyanthan Puvanendrampillai,John B. O. Mitchell
#t2003
#cBioinformatics
#index765554
#% 
#!
  
#*GENIE: estimating demographic history from molecular phylogenies.
#@O. G. Pybus,Andrew Rambaut
#t2002
#cBioinformatics
#index765555
#% 
#!
  
#*Processing Quantitative Real-time RT-PCR Data.
#@Perikles Simon Q-Gene
#t2003
#cBioinformatics
#index765556
#% 
#!
  
#*A comprehensive and non-redundant database of protein domain movements.
#@Guoying Qi,Richard A. Lee,Steven Hayward
#t2005
#cBioinformatics
#index765557
#% 
#!
  
#*Performance of an iterated T-HMM for homology detection.
#@Bin Qian,Richard A. Goldstein
#t2004
#cBioinformatics
#index765558
#% 
#!
  
#*Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data.
#@Jiang Qian,Jimmy J. Lin,Nicholas M. Luscombe,Haiyuan Yu,Mark Gerstein
#t2003
#cBioinformatics
#index765559
#% 
#!
  
#*An efficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria.
#@Zhaohui S. Qin,Shyam Gopalakrishnan,Gonçalo R. Abecasis
#t2006
#cBioinformatics
#index765560
#% 
#!
  
#*Kernel hierarchical gene clustering from microarray expression data.
#@Jie Qin,Darrin P. Lewis,William Stafford Noble
#t2003
#cBioinformatics
#index765561
#% 
#!
  
#*Ensemble dependence model for classification and prediction of cancer and normal gene expression data.
#@Peng Qiu,Z. Jane Wang,K. J. Ray Liu
#t2005
#cBioinformatics
#index765562
#% 
#!
  
#*Polynomial model approach for resynchronization analysis of cell-cycle gene expression data.
#@Peng Qiu,Z. Jane Wang,K. J. Ray Liu
#t2006
#cBioinformatics
#index765563
#% 
#!
  
#*It is time to end the patenting of software.
#@John Quackenbush,Steven Salzberg
#t2006
#cBioinformatics
#index765564
#% 
#!
  
#*A novel approach for increasing sensitivity and correcting saturation artifacts of radioactively labeled cDNA arrays.
#@Troy D. Querec,Radka Stoyanova,Eric Ross,Christos Patriotis
#t2004
#cBioinformatics
#index765566
#% 
#!
  
#*Genomic island identification in reveals significant genome plasticity in this human pathogen.
#@A. M. Quirke,F. Jerry Reen,Marcus J. Claesson,E. Fidelma Boyd
#t2006
#cBioinformatics
#index765567
#% 
#!
  
#*A genotype calling algorithm for affymetrix SNP arrays.
#@Nusrat Rabbee,Terence P. Speed
#t2006
#cBioinformatics
#index765568
#% 
#!
  
#*Accurate prediction of HIV-1 drug response from the reverse transcriptase and protease amino acid sequences using sparse models created by convex optimization.
#@Matthew Rabinowitz,Lance Myers,Milena Banjevic,Albert Chan,Joshua Sweetkind-Singer,Jessica Haberer,Kelly McCann,Roland Wolkowicz
#t2006
#cBioinformatics
#index765569
#% 
#!
  
#*GABAagent: a system for integrating data on GABA receptors.
#@Abdelkrim Rachedi,Michael Rebhan,Hong Xue
#t2000
#cBioinformatics
#index765570
#% 
#!
  
#*PrimeArray: genome-scale primer design for DNA-microarray construction.
#@Günter Raddatz,Michaela Dehio,Thomas F. Meyer,Christoph Dehio
#t2001
#cBioinformatics
#index765571
#% 
#!
  
#*Adapters, shims, and glue - service interoperability for experiments.
#@Uwe Radetzki,Ulf Leser,S. C. Schulze-Rauschenbach,J. Zimmermann,Jens Lüssem,Thomas Bode,Armin B. Cremers
#t2006
#cBioinformatics
#index765572
#% 
#!
  
#*Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC).
#@Syed Asad Rahman,P. Advani,R. Schunk,Rainer Schrader,Dietmar Schomburg
#t2005
#cBioinformatics
#index765574
#% 
#!
  
#*Observing local and global properties of metabolic pathways: "load points" and "choke points" in the metabolic networks.
#@Syed Asad Rahman,Dietmar Schomburg
#t2006
#cBioinformatics
#index765575
#% 
#!
  
#*Mean and variance of the Gibbs free energy of oligonucleotides in the nearest neighbor model under varying conditions.
#@Sven Rahmann,Christine Gräfe
#t2004
#cBioinformatics
#index765576
#% 
#!
  
#*Estimating cancer survival and clinical outcome based on genetic tumor progression scores.
#@Jörg Rahnenführer,Niko Beerenwinkel,Wolfgang A. Schulz,Christian Hartmann,Andreas von Deimling,Bernd Wullich,Thomas Lengauer
#t2005
#cBioinformatics
#index765577
#% 
#!
  
#*An interactive triple-helical collagen builder.
#@Jan K. Rainey,M. Cynthia Goh
#t2004
#cBioinformatics
#index765578
#% 
#!
  
#*A comparison of statistical methods for analysis of high density oligonucleotide array data.
#@Dilip Rajagopalan
#t2003
#cBioinformatics
#index765579
#% 
#!
  
#*Inferring pathways from gene lists using a literature-derived network of biological relationships.
#@Dilip Rajagopalan,Pankaj Agarwal
#t2005
#cBioinformatics
#index765580
#% 
#!
  
#*A fast coarse filtering method for peptide identification by mass spectrometry.
#@Smriti R. Ramakrishnan,Rui Mao,Aleksey A. Nakorchevskiy,John T. Prince,Willard S. Willard,Weijia Xu,Edward M. Marcotte,Daniel P. Miranker
#t2006
#cBioinformatics
#index765582
#% 
#!
  
#*Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies.
#@Andrew Rambaut
#t2000
#cBioinformatics
#index765583
#% 
#!
  
#*Segmentation of long genomic sequences into domains with homogeneous composition with BASIO software.
#@Vasily Ramensky,Vsevolod Makeev,Mikhail A. Roytberg,Vladimir G. Tumanyan
#t2001
#cBioinformatics
#index765587
#% 
#!
  
#*Recognition of splice junctions on DNA sequences by BRAIN learning algorithm.
#@Salvatore Rampone
#t1998
#cBioinformatics
#index765588
#% 
#!
  
#*SIR: a simple indexing and retrieval system for biological flat file databases.
#@Chenna Ramu
#t2001
#cBioinformatics
#index765589
#% 
#!
  
#*Object-oriented parsing of biological databases with Python.
#@Chenna Ramu,Christine Gemünd,Toby J. Gibson
#t2000
#cBioinformatics
#index765590
#% 
#!
  
#*Modeling T-cell activation using gene expression profiling and state-space models.
#@Claudia Rangel,John Angus,Zoubin Ghahramani,Maria Lioumi,Elizabeth Sotheran,Alessia Gaiba,David L. Wild,Francesco Falciani
#t2004
#cBioinformatics
#index765591
#% 
#!
  
#*Profile-based direct kernels for remote homology detection and fold recognition.
#@Huzefa Rangwala,George Karypis
#t2005
#cBioinformatics
#index765592
#% 
#!
  
#*A dissimilarity matrix between protein atom classes based on Gaussian mixtures.
#@Ville-Veikko Rantanen,Mats Gyllenberg,Timo Koski,Mark S. Johnson
#t2002
#cBioinformatics
#index765593
#% 
#!
  
#*Planning optimal measurements of isotopomer distributions for estimation of metabolic fluxes.
#@Ari Rantanen,Taneli Mielikäinen,Juho Rousu,Hannu Maaheimo,Esko Ukkonen
#t2006
#cBioinformatics
#index765594
#% 
#!
  
#*Docking of hydrophobic ligands with interaction-based matching algorithms.
#@Matthias Rarey,Bernd Kramer,Thomas Lengauer
#t1999
#cBioinformatics
#index765596
#% 
#!
  
#*A Bayesian network model for protein fold and remote homologue recognition.
#@A. Raval,Zoubin Ghahramani,David L. Wild
#t2002
#cBioinformatics
#index765597
#% 
#!
  
#*The PACRAT system: an extensible WWW-based system for correlated sequence retrieval, storage and analysis.
#@William C. Ray,Charles J. Daniels
#t2001
#cBioinformatics
#index765599
#% 
#!
  
#*Tricross : using dot-plots in sequence-id space to detect uncataloged intergenic features.
#@William C. Ray,Robert S. Munson Jr.,Charles J. Daniels
#t2001
#cBioinformatics
#index765600
#% 
#!
  
#*A literature-based method for assessing the functional coherence of a gene group.
#@Soumya Raychaudhuri,Russ B. Altman
#t2003
#cBioinformatics
#index765601
#% 
#!
  
#*GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support.
#@Michael Rebhan,Vered Chalifa-Caspi,J. Prilusky,Doron Lancet
#t1998
#cBioinformatics
#index765603
#% 
#!
  
#*EPIMHC: a curated database of MHC-binding peptides for customized computational vaccinology.
#@Pedro A. Reche,Hong Zhang,John-Paul Glutting,Ellis L. Reinherz
#t2005
#cBioinformatics
#index765604
#% 
#!
  
#*From data to knowledge.
#@François Rechenmann
#t2000
#cBioinformatics
#index765605
#% 
#!
  
#*A plant calmodulin-binding motor is part kinesin and part myosin.
#@V. S. Reddy,A. S. N. Reddy
#t1999
#cBioinformatics
#index765609
#% 
#!
  
#*MEICPS: substitution mutations to engineer intracellular protein stability.
#@B. V. B. Reddy,P. Ramesh,S. Tiwari
#t1998
#cBioinformatics
#index765610
#% 
#!
  
#*Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
#@Jens Reeder,Robert Giegerich
#t2005
#cBioinformatics
#index765611
#% 
#!
  
#*Empirical determination of effective gap penalties for sequence comparison.
#@J. T. Reese,William R. Pearson
#t2002
#cBioinformatics
#index765612
#% 
#!
  
#*DMLE+: Bayesian linkage disequilibrium gene mapping.
#@Jeff P. Reeve,Bruce Rannala
#t2002
#cBioinformatics
#index765613
#% 
#!
  
#*GeneCluster 2.0: an advanced toolset for bioarray analysis.
#@Michael Reich,K. Ohm,Michael Angelo,Pablo Tamayo,Jill P. Mesirov
#t2004
#cBioinformatics
#index765616
#% 
#!
  
#*EPPS: mining the COG database by an extended phylogenetic patterns search.
#@Klaus Reichard,Michael Kaufmann
#t2003
#cBioinformatics
#index765617
#% 
#!
  
#*BRAGI: linking and visualization of database information in a 3D viewer and modeling tool.
#@Joachim Reichelt,Guido Dieterich,Marsel Kvesic,Dietmar Schomburg,Dirk W. Heinz
#t2005
#cBioinformatics
#index765618
#% 
#!
  
#*Identifying differentially expressed genes using false discovery rate controlling procedures.
#@Anat Reiner,Daniel Yekutieli,Yoav Benjamini
#t2003
#cBioinformatics
#index765621
#% 
#!
  
#*An iterative method for faster sum-of-pairs multiple sequence alignment.
#@Knut Reinert,Jens Stoye,Torsten Will
#t2000
#cBioinformatics
#index765622
#% 
#!
  
#*siRecords: an extensive database of mammalian siRNAs with efficacy ratings.
#@Yongliang Ren,Wuming Gong,Qiqi Xu,Xin Zheng,Dong Lin,Yejun Wang,Tongbin Li
#t2006
#cBioinformatics
#index765626
#% 
#!
  
#*An evolution based classifier for prediction of protein interfaces without using protein structures.
#@I. Res,I. Mihalek,Olivier Lichtarge
#t2005
#cBioinformatics
#index765627
#% 
#!
  
#*Analysis of mass spectral serum profiles for biomarker selection.
#@Habtom W. Ressom,Rency S. Varghese,Mohamed Abdel-Hamid,Sohair Abdel-Latif Eissa,Daniel Saha,Lenka Goldman,Emanuel F. Petricoin,Thomas P. Conrads,Timothy D. Veenstra,Christopher A. Loffredo,Radoslav Goldman
#t2005
#cBioinformatics
#index765629
#% 
#!
  
#*SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs.
#@Joke Reumers,Sebastian Maurer-Stroh,Joost Schymkowitz,Frederic Rousseau
#t2006
#cBioinformatics
#index765630
#% 
#!
  
#*A rapid method for computationally inferring transcriptome coverage and microarray sensitivity.
#@Toni Reverter-Gomez,S. M. McWilliam,Wes Barris,Brian P. Dalrymple
#t2005
#cBioinformatics
#index765631
#% 
#!
  
#*Validation of alternative methods of data normalization in gene co-expression studies.
#@Antonio Reverter,Wes Barris,Sean McWilliam,Keren A. Byrne,Yong H. Wang,Siok-Hwee Tan,Nick Hudson,Brian P. Dalrymple
#t2005
#cBioinformatics
#index765632
#% 
#!
  
#*ROSO: optimizing oligonucleotide probes for microarrays.
#@Nancie Reymond,Hubert Charles,Laurent Duret,Federica Calevro,Guillaume Beslon,Jean-Michel Fayard
#t2004
#cBioinformatics
#index765633
#% 
#!
  
#*CIT: identification of differentially expressed clusters of genes from microarray data.
#@Daniel R. Rhodes,Jeremy C. Miller,Brian B. Haab,Kyle A. Furge
#t2002
#cBioinformatics
#index765634
#% 
#!
  
#*WebAllergen: a web server for predicting allergenic proteins.
#@Tariq Riaz,Hen Ley Hor,Arun Krishnan,Francis Tang,Kuo-Bin Li
#t2005
#cBioinformatics
#index765635
#% 
#!
  
#*Reconstructing biological networks using conditional correlation analysis.
#@John Jeremy Rice,Yuhai Tu,Gustavo Stolovitzky
#t2005
#cBioinformatics
#index765636
#% 
#!
  
#*Maximum significance clustering of oligonucleotide microarrays.
#@Dick de Ridder,Frank J. T. Staal,Jacques J. M. van Dongen,Marcel J. T. Reinders
#t2006
#cBioinformatics
#index765637
#% 
#!
  
#*Geometry of gene expression dynamics.
#@S. A. Rifkin,J. Kim
#t2002
#cBioinformatics
#index765638
#% 
#!
  
#*Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm [published erratum appears in Bioinformatics 1998;14(2): 229].
#@Isidore Rigoutsos,Aris Floratos
#t1998
#cBioinformatics
#index765639
#% 
#!
  
#*BioWAP, mobile Internet service for bioinformatics.
#@Pentti Riikonen,Jorma Boberg,Tapio Salakoski,Mauno Vihinen
#t2001
#cBioinformatics
#index765640
#% 
#!
  
#*MUTbase: maintenance and analysis of distributed mutation databases.
#@Pentti Riikonen,Mauno Vihinen
#t1999
#cBioinformatics
#index765641
#% 
#!
  
#*RnaViz 2: an improved representation of RNA secondary structure.
#@Peter De Rijk,Jan Wuyts,Rupert De Wachter
#t2003
#cBioinformatics
#index765643
#% 
#!
  
#*BioABACUS: a database of abbreviations and acronyms in biotechnology and computer science.
#@M. Rimer,Michael O'Connell
#t1998
#cBioinformatics
#index765644
#% 
#!
  
#*GoArrays: highly dynamic and efficient microarray probe design.
#@Sébastien Rimour,David R. C. Hill,Cécile Militon,Pierre Peyret
#t2005
#cBioinformatics
#index765645
#% 
#!
  
#*ACID: a database for microarray clone information.
#@Markus Ringnér,Srinivas Veerla,Samuel Andersson,Johan Staaf,Jari Häkkinen
#t2004
#cBioinformatics
#index765646
#% 
#!
  
#*SNPper: retrieval and analysis of human SNPs.
#@Alberto Riva,Isaac S. Kohane
#t2002
#cBioinformatics
#index765647
#% 
#!
  
#*Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs.
#@Elena Rivas,Sean R. Eddy
#t2000
#cBioinformatics
#index765649
#% 
#!
  
#*The language of RNA: a formal grammar that includes pseudoknots.
#@Elena Rivas,Sean R. Eddy
#t2000
#cBioinformatics
#index765650
#% 
#!
  
#*The early days of bioinformatics publishing.
#@Richard J. Roberts
#t2000
#cBioinformatics
#index765651
#% 
#!
  
#*Reducing storage requirements for biological sequence comparison.
#@Michael Roberts,Wayne Hayes,Brian R. Hunt,Stephen M. Mount,James A. Yorke
#t2004
#cBioinformatics
#index765652
#% 
#!
  
#*RRTree: Relative-Rate Tests between groups of sequences on a phylogenetic tree.
#@Marc Robinson-Rechavi,Dorothée Huchon
#t2000
#cBioinformatics
#index765654
#% 
#!
  
#*Ontologizing gene-expression microarray data: characterizing clusters with Gene Ontology
#@Peter N. Robinson,Andreas Wollstein,Ulrike Böhme,Bradley J. Beattie
#t2004
#cBioinformatics
#index765655
#% 
#!
  
#*lga972: a cross-platform application for optimizing LD studies using a genetic algorithm.
#@Jaime R. Robles,Edwin J. C. G. van den Oord
#t2004
#cBioinformatics
#index765656
#% 
#!
  
#*Automatic discovery and classification of bioinformatics Web sources.
#@Daniel Rocco,Terence Critchlow
#t2003
#cBioinformatics
#index765658
#% 
#!
  
#*Approximate Variance-stabilizing Transformations for Gene-expression Microarray Data.
#@David M. Rocke,Blythe Durbin
#t2003
#cBioinformatics
#index765659
#% 
#!
  
#*A method for detection of differential gene expression in the presence of inter-individual variability in response.
#@David M. Rocke,Zelanna Goldberg,Chad Schweitert,Alison Santana
#t2005
#cBioinformatics
#index765660
#% 
#!
  
#*DIVAA: analysis of amino acid diversity in multiple aligned protein sequences.
#@Diane J. Rodi,Suneeta Mandava,Lee Makowski
#t2004
#cBioinformatics
#index765661
#% 
#!
  
#*Mining genetic epidemiology data with Bayesian networks I: Bayesian networks and example application (plasma apoE levels).
#@Andrei S. Rodin,Eric Boerwinkle
#t2005
#cBioinformatics
#index765662
#% 
#!
  
#*The BioCatalog.
#@Patricia Rodriguez-Tomé
#t1998
#cBioinformatics
#index765663
#% 
#!
  
#*Homology modeling, model and software evaluation: three related resources.
#@R. Rodriguez,G. Chinea,N. Lopez,T. Pons,Gert Vriend
#t1998
#cBioinformatics
#index765665
#% 
#!
  
#*Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in .
#@Jordi Vidal Rodríguez,Jaap A. Kaandorp,Maciej Dobrzynski,Joke G. Blom
#t2006
#cBioinformatics
#index765666
#% 
#!
  
#*A Bayesian regression approach to the inference of regulatory networks from gene expression data.
#@Simon Rogers,Mark Girolami
#t2005
#cBioinformatics
#index765668
#% 
#!
  
#*Improving gene recognition accuracy by combining predictions from two gene-finding programs.
#@Sanja Rogic,B. F. Francis Ouellette,Alan K. Mackworth
#t2002
#cBioinformatics
#index765669
#% 
#!
  
#*Six-fold speed-up of Smith-Waterman sequence database searches using parallel processing on common microprocessors.
#@Torbjørn Rognes,Erling Seeberg
#t2000
#cBioinformatics
#index765670
#% 
#!
  
#*SALSA: improved protein database searching by a new algorithm for assembly of sequence fragments into gapped alignments.
#@Torbjørn Rognes,Erling Seeberg
#t1998
#cBioinformatics
#index765671
#% 
#!
  
#*Why neural networks should not be used for HIV-1 protease cleavage site prediction.
#@Thorsteinn S. Rögnvaldsson,Liwen You
#t2004
#cBioinformatics
#index765672
#% 
#!
  
#*Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a `weak' context of the start codon.
#@Igor B. Rogozin,Alexey V. Kochetov,Fyodor A. Kondrashov,Eugene V. Koonin,Luciano Milanesi
#t2001
#cBioinformatics
#index765673
#% 
#!
  
#*Metabolic pathways in three dimensions.
#@Igor Rojdestvenski
#t2003
#cBioinformatics
#index765676
#% 
#!
  
#*AFLPinSilico, simulating AFLP fingerprints.
#@Stephane Rombauts,Yves Van de Peer,Pierre Rouzé
#t2003
#cBioinformatics
#index765679
#% 
#!
  
#*Using functional and organizational information to improve genome-wide computational prediction of transcription units on pathway-genome databases.
#@Pedro Romero,Peter D. Karp
#t2004
#cBioinformatics
#index765680
#% 
#!
  
#*GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness.
#@Alessandro Romualdi,Roman Siddiqui,Gernot Glöckner,Rüdiger Lehmann,Jürgen Sühnel
#t2005
#cBioinformatics
#index765682
#% 
#!
  
#*Genview and Gencode: a pair of programs to test theories of genetic code evolution.
#@T. Andrew Ronneberg,Stephen J. Freeland,Laura F. Landweber
#t2001
#cBioinformatics
#index765683
#% 
#!
  
#*MrBayes 3: Bayesian phylogenetic inference under mixed models.
#@Fredrik Ronquist,John P. Huelsenbeck
#t2003
#cBioinformatics
#index765684
#% 
#!
  
#*Origins of introns based on the definition of exon modules and their conserved interfaces.
#@Albert D. G. de Roos
#t2005
#cBioinformatics
#index765685
#% 
#!
  
#*VAMP: Visualization and analysis of array-CGH, transcriptome and other molecular profiles.
#@Philippe La Rosa,Eric Viara,Philippe Hupé,Gaëlle Pierron,Stéphane Liva,Pierre Neuvial,Isabel Brito,Séverine Lair,Nicolas Servant,Nicolas Robine,Elodie Manié,Caroline Brennetot,Isabelle Janoueix-Lerosey,Virginie Raynal,Nadège Gruel,Céline Rouveirol,Nicolas Stransky,Marc-Henri Stern,Olivier Delattre,Alain Aurias,François Radvanyi,Emmanuel Barillot
#t2006
#cBioinformatics
#index765686
#% 
#!
  
#*Detecting hypermutations in viral sequences with an emphasis on G A hypermutation.
#@Patrick P. Rose,Bette T. Korber
#t2000
#cBioinformatics
#index765687
#% 
#!
  
#*Correlation of amino acid preference and mammalian viral genome type.
#@John R. Rose,William H. Turkett Jr.,Iulia C. Oroian,William W. Laegreid,John W. Keele
#t2005
#cBioinformatics
#index765688
#% 
#!
  
#*ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms.
#@Jeffrey A. Rosenfeld,Indra Neil Sarkar,Paul J. Planet,David H. Figurski,Robert DeSalle
#t2004
#cBioinformatics
#index765690
#% 
#!
  
#*MREPATT: detection and analysis of exact consecutive repeats in genomic sequences.
#@Roman Roset,Juan A. Subirana,Xavier Messeguer
#t2003
#cBioinformatics
#index765693
#% 
#!
  
#*TreeWiz: interactive exploration of huge trees.
#@Ursula Rost,Erich Bornberg-Bauer
#t2002
#cBioinformatics
#index765695
#% 
#!
  
#*Bioinformatics in structural genomics - Editorial.
#@Burkhard Rost,Barry Honig,Alfonso Valencia
#t2002
#cBioinformatics
#index765696
#% 
#!
  
#*Inhomogeneous molecular density: reference packing densities and distribution of cavities within proteins.
#@Kristian Rother,Robert Preissner,Andrean Goede,Cornelius Frömmel
#t2003
#cBioinformatics
#index765699
#% 
#!
  
#*Ridom TraceEdit: a DNA trace editor and viewer.
#@Jörg Rothgänger,Markus Weniger,Thomas Weniger,Alexander Mellmann,Dag Harmsen
#t2006
#cBioinformatics
#index765700
#% 
#!
  
#*OligoArray: genome-scale oligonucleotide design for microarrays.
#@Jean-Marie Rouillard,Christopher J. Herbert,Michael Zuker
#t2002
#cBioinformatics
#index765701
#% 
#!
  
#*PatGen - a consolidated resource for searching genetic patent sequences.
#@Richard J. D. Rouse,Jesus Castagnetto,Roland H. Niedner
#t2005
#cBioinformatics
#index765702
#% 
#!
  
#*Computation of recurrent minimal genomic alterations from array-CGH data.
#@Céline Rouveirol,Nicolas Stransky,Philippe Hupé,Philippe La Rosa,Eric Viara,Emmanuel Barillot,François Radvanyi
#t2006
#cBioinformatics
#index765703
#% 
#!
  
#*A hierarchical approach to aligning collinear regions of genomes.
#@Mikhail A. Roytberg,Aleksey Y. Ogurtsov,Svetlana A. Shabalina,Alexey S. Kondrashov
#t2002
#cBioinformatics
#index765707
#% 
#!
  
#*DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis.
#@Julio Rozas,Ricardo Rozas
#t1999
#cBioinformatics
#index765710
#% 
#!
  
#*DnaSP, DNA polymorphism analyses by the coalescent and other methods.
#@Julio Rozas,Juan C. Sánchez-DelBarrio,Xavier Messeguer,Ricardo Rozas
#t2003
#cBioinformatics
#index765711
#% 
#!
  
#*A dynamic programming algorithm for binning microbial community profiles.
#@Quansong Ruan,Joshua A. Steele,Michael S. Schwalbach,Jed A. Fuhrman,Fengzhu Sun
#t2006
#cBioinformatics
#index765712
#% 
#!
  
#*An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
#@Jianhua Ruan,Gary D. Stormo,Weixiong Zhang
#t2004
#cBioinformatics
#index765713
#% 
#!
  
#*A bi-dimensional regression tree approach to the modeling of gene expression regulation.
#@Jianhua Ruan,Weixiong Zhang
#t2006
#cBioinformatics
#index765714
#% 
#!
  
#*Automatic assignment of biomedical categories: toward a generic approach.
#@Patrick Ruch
#t2006
#cBioinformatics
#index765715
#% 
#!
  
#*ALOHOMORA: a tool for linkage analysis using 10K SNP array data.
#@Franz Rüschendorf,Peter J. Nürnberg
#t2005
#cBioinformatics
#index765716
#% 
#!
  
#*Desktop prediction/analysis of mass spectrometric data in proteomic projects by using massXpert.
#@Filippo Rusconi,Maya Belghazi
#t2002
#cBioinformatics
#index765717
#% 
#!
  
#*Artemis: sequence visualization and annotation.
#@Kim Rutherford,Julian Parkhill,James Crook,Terry Horsnell,Peter Rice,Marie-Adèle Rajandream,Bart Barrell
#t2000
#cBioinformatics
#index765719
#% 
#!
  
#*Arbor 3D: an interactive environment for examining phylogenetic and taxonomic trees in multiple dimensions.
#@Derek A. Ruths,Edward S. Chen,Leland Ellis
#t2000
#cBioinformatics
#index765720
#% 
#!
  
#*ToolShop: prerelease inspections for protein structure prediction servers.
#@Leszek Rychlewski
#t2001
#cBioinformatics
#index765721
#% 
#!
  
#*MAMMOT - a set of tools for the design, management and visualization of genomic tiling arrays.
#@E. Ryder,R. Jackson,A. Ferguson-Smith,Steven Russell
#t2006
#cBioinformatics
#index765722
#% 
#!
  
#*Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome.
#@Andrey Rzhetsky,Shawn M. Gomez
#t2001
#cBioinformatics
#index765724
#% 
#!
  
#*A knowledge model for analysis and simulation of regulatory networks.
#@Andrey Rzhetsky,Tomohiro Koike,Sergey Kalachikov,Shawn M. Gomez,Michael Krauthammer,Sabina H. Kaplan,Pauline Kra,James J. Russo,Carol Friedman
#t2000
#cBioinformatics
#index765725
#% 
#!
  
#*Bayesian sparse hidden components analysis for transcription regulation networks.
#@Chiara Sabatti,Gareth M. James
#t2006
#cBioinformatics
#index765727
#% 
#!
  
#*Vocabulon: a dictionary model approach for reconstruction and localization of transcription factor binding sites.
#@Chiara Sabatti,Lars Rohlin,Kenneth Lange,James C. Liao
#t2005
#cBioinformatics
#index765728
#% 
#!
  
#*SPAAN: a software program for prediction of adhesins and adhesin-like proteins using neural networks.
#@Gaurav Sachdeva,Kaushal Kumar,Preti Jain,Srinivasan Ramachandran
#t2005
#cBioinformatics
#index765729
#% 
#!
  
#*Automated generation and refinement of protein signatures: case study with G-protein coupled receptors.
#@Michael I. Sadowski,John Howard Parish
#t2003
#cBioinformatics
#index765730
#% 
#!
  
#*Quality of alignment comparison by COMPASS improves with inclusion of diverse confident homologs.
#@Ruslan Sadreyev,Nick V. Grishin
#t2004
#cBioinformatics
#index765731
#% 
#!
  
#*Predicting the efficacy of short oligonucleotides in antisense and RNAi experiments with boosted genetic programming.
#@Pål Sætrom
#t2004
#cBioinformatics
#index765732
#% 
#!
  
#*GeneCardsTM 2002: towards a complete, object-oriented, human gene compendium.
#@Marilyn Safran,Irina Solomon,Orit Shmueli,Michal Lapidot,Shai Shen-Orr,Avital Adato,Uri Ben-Dor,Nir Esterman,Naomi Rosen,Inga Peter,Tsviya Olender,Vered Chalifa-Caspi,Doron Lancet
#t2002
#cBioinformatics
#index765733
#% 
#!
  
#*Protein homology detection using string alignment kernels.
#@Hiroto Saigo,Jean-Philippe Vert,Nobuhisa Ueda,Tatsuya Akutsu
#t2004
#cBioinformatics
#index765735
#% 
#!
  
#*Meta-DP: domain prediction meta-server.
#@Harpreet Kaur Saini,Daniel Fischer
#t2005
#cBioinformatics
#index765736
#% 
#!
  
#*Construction of reliable protein-protein interaction networks with a new interaction generality measure.
#@Rintaro Saito,Harukazu Suzuki,Yoshihide Hayashizaki
#t2003
#cBioinformatics
#index765737
#% 
#!
  
#*TangleSolve: topological analysis of site-specific recombination.
#@Yuki Saka,Mariel Vázquez
#t2002
#cBioinformatics
#index765738
#% 
#!
  
#*Exploring genome architecture through GOV: a WWW-based gene order visualizer.
#@Kishore R. Sakharkar,Vincent T. K. Chow
#t2004
#cBioinformatics
#index765740
#% 
#!
  
#*SEGE: A database on 'intron less/single exonic' genes from eukaryotes.
#@Meena K. Sakharkar,Pandjassarame Kangueane,Dmitri A. Petrov,Ashok S. Kolaskar,S. Subbiah
#t2002
#cBioinformatics
#index765741
#% 
#!
  
#*IE-Kb: intron exon knowledge base.
#@Meena K. Sakharkar,Pandjassarame Kangueane,Tong W. Woon,Tin Wee Tan,Prasanna R. Kolatkar,Manyuan Long,Sandro J. de Souza
#t2000
#cBioinformatics
#index765742
#% 
#!
  
#*Generation of a database containing discordant intron positions in eukaryotic genes (MIDB).
#@Meena K. Sakharkar,Tin Wee Tan,Sandro J. de Souza
#t2001
#cBioinformatics
#index765743
#% 
#!
  
#*VISTRAJ: exploring protein conformational space.
#@John J. Salama,Howard J. Feldman,Christopher W. V. Hogue
#t2001
#cBioinformatics
#index765744
#% 
#!
  
#*Assessing protein coding region integrity in cDNA sequencing projects.
#@Asaf A. Salamov,Tetsuo Nishikawa,Mark B. Swindells
#t1998
#cBioinformatics
#index765745
#% 
#!
  
#*Java Treeview - extensible visualization of microarray data.
#@Alok J. Saldanha
#t2004
#cBioinformatics
#index765749
#% 
#!
  
#*Quality classification of tandem mass spectrometry data.
#@Jussi Salmi,Robert Moulder,Jan-Jonas Filén,Olli Nevalainen,Tuula A. Nyman,Riitta Lahesmaa,Tero Aittokallio
#t2006
#cBioinformatics
#index765751
#% 
#!
  
#*caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid.
#@Joel H. Saltz,Scott Oster,Shannon Hastings,Stephen Langella,Tahsin M. Kurç,William Sanchez,Manav Kher,Arumani Manisundaram,Krishnakant Shanbhag,Peter A. Covitz
#t2006
#cBioinformatics
#index765752
#% 
#!
  
#*Beware of mis-assembled genomes.
#@Steven Salzberg,James A. Yorke
#t2005
#cBioinformatics
#index765754
#% 
#!
  
#*(QAlign2): an open graphical environment for sequence analysis.
#@Michael Sammeth,Thasso Griebel,Felix Tille,Jens Stoye
#t2006
#cBioinformatics
#index765755
#% 
#!
  
#*Digital extractor: analysis of digital differential display output.
#@Michael Sammeth,Jörg Rothgänger,W. Esser,Jürgen Albert,Jens Stoye,Dag Harmsen
#t2003
#cBioinformatics
#index765756
#% 
#!
  
#*Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting.
#@Jim Samuelsson,Daniel Dalevi,Fredrik Levander,Thorsteinn S. Rögnvaldsson
#t2004
#cBioinformatics
#index765758
#% 
#!
  
#*NAIL-Network Analysis Interface for Linking HMMER results.
#@Luis Sánchez-Pulido,Yan P. Yuan,Miguel A. Andrade,Peer Bork
#t2000
#cBioinformatics
#index765759
#% 
#!
  
#*ModBase: A database of comparative protein structure models.
#@Roberto Sánchez
#t1999
#cBioinformatics
#index765761
#% 
#!
  
#*Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction.
#@Carlos Santos,Daniela Eggle,David J. States
#t2005
#cBioinformatics
#index765764
#% 
#!
  
#*Extracting multiple structural alignments from pairwise alignments: a comparison of a rigorous and a heuristic approach.
#@Erik Sandelin
#t2005
#cBioinformatics
#index765765
#% 
#!
  
#*Highly specific and accurate selection of siRNAs for high-throughput functional assays.
#@Javier Santoyo,Juan M. Vaquerizas,Joaquín Dopazo
#t2005
#cBioinformatics
#index765766
#% 
#!
  
#*Bioinformatics - Challenges in 2001.
#@Chris Sander
#t2001
#cBioinformatics
#index765767
#% 
#!
  
#*The Journal Bioinformatics, key medium for computational biology.
#@Chris Sander
#t2002
#cBioinformatics
#index765769
#% 
#!
  
#*Protein analyst - a distributed object environment for protein sequence and structure analysis.
#@Mansoor A. S. Saqi,David L. Wild,M. J. Hartshorn
#t1999
#cBioinformatics
#index765770
#% 
#!
  
#*Growth in Bioinformatics.
#@Chris Sander
#t2003
#cBioinformatics
#index765771
#% 
#!
  
#*wEMBOSS: a web interface for EMBOSS.
#@Martín Sarachu,Marc Colet
#t2005
#cBioinformatics
#index765772
#% 
#!
  
#*r8s: inferring absolute rates of molecular evolution, divergence times in the absence of a molecular clock.
#@Michael J. Sanderson
#t2003
#cBioinformatics
#index765773
#% 
#!
  
#*Extraction of regulatory gene/protein networks from Medline.
#@Jasmin Saric,Lars Juhl Jensen,Rossitza Ouzounova,Isabel Rojas,Peer Bork
#t2006
#cBioinformatics
#index765774
#% 
#!
  
#*: an OpenGL 3D phylogeny browser.
#@Michael J. Sanderson
#t2006
#cBioinformatics
#index765775
#% 
#!
  
#*ExPrimer: to design primers from exon-exon junctions.
#@Kuljeet S. Sandhu,Kshitish K. Acharya
#t2005
#cBioinformatics
#index765777
#% 
#!
  
#*Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.
#@R. Sásik,E. Calvo,Jacques Corbeil
#t2002
#cBioinformatics
#index765778
#% 
#!
  
#*Automatic term list generation for entity tagging.
#@Ted Sandler,Andrew I. Schein,Lyle H. Ungar
#t2006
#cBioinformatics
#index765779
#% 
#!
  
#*Genome rearrangement with gene families.
#@David Sankoff
#t1999
#cBioinformatics
#index765780
#% 
#!
  
#*Bioinformatics and the Y2K Problem.
#@
#t1999
#cBioinformatics
#index765781
#% 
#!
  
#*Accounting for probe-level noise in principal component analysis of microarray data.
#@Guido Sanguinetti,Marta Milo,Magnus Rattray,Neil D. Lawrence
#t2005
#cBioinformatics
#index765782
#% 
#!
  
#*MapLinker: a software tool that aids physical map-linked whole genome shotgun assembly.
#@Jian Xu,Jeffrey I. Gordon
#t2005
#cBioinformatics
#index765784
#% 
#!
  
#*A probabilistic dynamical model for quantitative inference of the regulatory mechanism of transcription.
#@Guido Sanguinetti,Magnus Rattray,Neil D. Lawrence
#t2006
#cBioinformatics
#index765785
#% 
#!
  
#*Extracting transcriptional events from temporal gene expression patterns during Dictyostelium development.
#@R. Sásik,N. Iranfar,Terence Hwa,W. F. Loomis
#t2002
#cBioinformatics
#index765786
#% 
#!
  
#*The early introduction of dynamic programming into computational biology.
#@David Sankoff
#t2000
#cBioinformatics
#index765787
#% 
#!
  
#*SISEQ: manipulation of multiple sequence and large database files for common platforms.
#@Naoki Sato
#t2000
#cBioinformatics
#index765788
#% 
#!
  
#*Short inversions and conserved gene cluster.
#@David Sankoff
#t2002
#cBioinformatics
#index765789
#% 
#!
  
#*Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens.
#@Glen A. Satten,Somnath Datta,Hercules Moura,Adrian R. Woolfitt,Maria da G. Carvalho,George M. Carlone,Barun K. De,Antonis Pavlopoulos,John R. Barr
#t2004
#cBioinformatics
#index765790
#% 
#!
  
#*GenoMap, a circular genome data viewer.
#@Naoki Sato,Shigeki Ehira
#t2003
#cBioinformatics
#index765791
#% 
#!
  
#*The ArrayExpress gene expression database: a software engineering and implementation perspective.
#@Ugis Sarkans,Helen E. Parkinson,Gonzalo Garcia Lara,Ahmet Oezcimen,Anjan Sharma,Niran Abeygunawardena,Sergio Contrino,Ele Holloway,Philippe Rocca-Serra,Gaurab Mukherjee,Mohammadreza Shojatalab,Misha Kapushesky,Susanna-Assunta Sansone,Anna Farne,Tim F. Rayner,Alvis Brazma
#t2005
#cBioinformatics
#index765792
#% 
#!
  
#*Computational Analysis of Stop Codon Readthrough in D.melanogaster.
#@Misaki Sato,Hitomi Umeki,Rintaro Saito,Akio Kanai,Masaru Tomita
#t2003
#cBioinformatics
#index765793
#% 
#!
  
#*The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.
#@Tetsuya Sato,Yoshihiro Yamanishi,Minoru Kanehisa,Hiroyuki Toh
#t2005
#cBioinformatics
#index765794
#% 
#!
  
#*A tool-kit for cDNA microarray and promoter analysis.
#@N. H. Shah,D. C. King,P. N. Shah,Nina V. Fedoroff
#t2003
#cBioinformatics
#index765796
#% 
#!
  
#*Quick and simple: quality control of microarray data.
#@Ursula Sauer,Claudia Preininger,Robert Hany-Schmatzberger
#t2005
#cBioinformatics
#index765797
#% 
#!
  
#*Computational identification of putative programmed translational frameshift sites.
#@Atul A. Shah,Michael C. Giddings,Jasmin B. Parvaz,Raymond F. Gesteland,John F. Atkins,Ivaylo P. Ivanov
#t2002
#cBioinformatics
#index765798
#% 
#!
  
#*Evaluating phylogenetic footprinting for human-rodent comparisons.
#@Tilman Sauer,Ekaterina Shelest,Edgar Wingender
#t2006
#cBioinformatics
#index765799
#% 
#!
  
#*GeneComber: Combining Outputs of Gene Prediction Programs for Improved Results.
#@Sohrab P. Shah,Graham P. McVicker,Alan K. Mackworth,Sanja Rogic,B. F. Francis Ouellette
#t2003
#cBioinformatics
#index765800
#% 
#!
  
#*An online database for the detection of novel archaeal sequences in human ESTs.
#@Neil F. W. Saunders,Paul M. G. Curmi,Ricardo Cavicchioli
#t2004
#cBioinformatics
#index765801
#% 
#!
  
#*A computational pipeline for protein structure prediction and analysis at genome scale.
#@Manesh J. Shah,Sergei Passovets,Dongsup Kim,Kyle Ellrott,Li Wang,Inna Vokler,Philip F. LoCascio,Dong Xu,Ying Xu
#t2003
#cBioinformatics
#index765804
#% 
#!
  
#*Inferring global levels of alternative splicing isoforms using a generative model of microarray data.
#@Ofer Shai,Quaid Morris,Benjamin J. Blencowe,Brendan J. Frey
#t2006
#cBioinformatics
#index765806
#% 
#!
  
#*Drawing phylogenetic trees in LATEX and Microsoft Word.
#@George Savva,Jenn Conn,Jo L. Dicks
#t2004
#cBioinformatics
#index765809
#% 
#!
  
#*An examination of the conservation of surface patch polarity for proteins.
#@H. P. Shanahan,Janet M. Thornton
#t2004
#cBioinformatics
#index765810
#% 
#!
  
#*The Open Access option.
#@Claire Saxby
#t2005
#cBioinformatics
#index765811
#% 
#!
  
#*Bioinformatic analysis of exon repetition, exon scrambling and trans-splicing in humans.
#@Xiang Shao,Valery Shepelev,Alexei Fedorov
#t2006
#cBioinformatics
#index765812
#% 
#!
  
#*MathSBML: a package for manipulating SBML-based biological models.
#@Bruce E. Shapiro,Michael Hucka,Andrew Finney,John Doyle
#t2004
#cBioinformatics
#index765816
#% 
#!
  
#*Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.
#@Jinwook Seo,Marina Bakay,Yi-Wen Chen,Sara Hilmer,Ben Shneiderman,Eric P. Hoffman
#t2004
#cBioinformatics
#index765818
#% 
#!
  
#*A Comparison of Parametric Versus Permutation Methods with Applications to General and Temporal Microarray Gene Expression Data.
#@Ronghui Xu,Xiaochun Li
#t2003
#cBioinformatics
#index765819
#% 
#!
  
#*The TRANSPATH signal transduction database: a knowledge base on signal transduction networks.
#@Frank Schacherer,Claudia Choi,Ulrike Götze,Mathias Krull,Susanne Pistor,Edgar Wingender
#t2001
#cBioinformatics
#index765820
#% 
#!
  
#*Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations.
#@Bruce E. Shapiro,Andre Levchenko,Elliot M. Meyerowitz,Barbara J. Wold,Eric Mjolsness
#t2003
#cBioinformatics
#index765821
#% 
#!
  
#*An empirical Bayes approach to inferring large-scale gene association networks.
#@Juliane Schäfer,Korbinian Strimmer
#t2005
#cBioinformatics
#index765822
#% 
#!
  
#*An interactive power analysis tool for microarray hypothesis testing and generation.
#@Jinwook Seo,Heather Gordish-Dressman,Eric P. Hoffman
#t2006
#cBioinformatics
#index765825
#% 
#!
  
#*A metric model of amino acid substitution.
#@Weijia Xu,Daniel P. Miranker
#t2004
#cBioinformatics
#index765826
#% 
#!
  
#*IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.
#@Alejandro A. Schäffer,Yuri I. Wolf,Chris P. Ponting,Eugene V. Koonin,L. Aravind,Stephen F. Altschul
#t1999
#cBioinformatics
#index765827
#% 
#!
  
#*A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times.
#@Tae-Kun Seo,Jeffrey L. Thorne,Masami Hasegawa,Hirohisa Kishino
#t2002
#cBioinformatics
#index765828
#% 
#!
  
#*The influence of missing value imputation on detection of differentially expressed genes from microarray data.
#@Ida Scheel,Magne Aldrin,Ingrid K. Glad,Ragnhild Sørum,Heidi Lyng,Arnoldo Frigessi
#t2005
#cBioinformatics
#index765832
#% 
#!
  
#*W2H: WWW interface to the GCG sequence analysis package.
#@Martin Senger,T. Flores,Karl-Heinz Glatting,Peter Ernst,Agnes Hotz-Wagenblatt,Sándor Suhai
#t1998
#cBioinformatics
#index765833
#% 
#!
  
#*MetaFam: a unified classification of protein families. II. Schema and query capabilities.
#@Elizabeth Shoop,Kevin A. T. Silverstein,James E. Johnson,Ernest F. Retzel
#t2001
#cBioinformatics
#index765834
#% 
#!
  
#*ESTprep: Preprocessing CDNA Sequence Reads.
#@Todd E. Scheetz,Nishank Trivedi,Chad A. Roberts,Tamara Kucaba,Brian Berger,Natalie L. Robinson,Clayton L. Birkett,Allen J. Gavin,Brian O'Leary,Terry A. Braun,Maria F. Bonaldo,John P. Robinson,Val C. Sheffield,Marcelo Bento Soares,Thomas L. Casavant
#t2003
#cBioinformatics
#index765835
#% 
#!
  
#*The massively parallel genetic algorithm for RNA folding: MIMD implementation and population variation.
#@Bruce A. Shapiro,Jin Chu Wu,David Bengali,Mark J. Potts
#t2001
#cBioinformatics
#index765836
#% 
#!
  
#*twilight; a Bioconductor package for estimating the local false discovery rate.
#@Stefanie Scheid,Rainer Spang
#t2005
#cBioinformatics
#index765837
#% 
#!
  
#*CLICK and EXPANDER: a system for clustering and visualizing gene expression data.
#@Roded Sharan,Adi Maron-Katz,Ron Shamir
#t2003
#cBioinformatics
#index765840
#% 
#!
  
#*Spectral Repeat Finder (SRF): identification of repetitive sequences using Fourier transformation.
#@Deepak Sharma,Biju Issac,G. P. S. Raghava,R. Ramaswamy
#t2004
#cBioinformatics
#index765842
#% 
#!
  
#*Letter to the Editor.
#@Lisa M. Schilling,Jonathan D. Wren,Robert P. Dellavalle
#t2004
#cBioinformatics
#index765843
#% 
#!
  
#*ShiftDetector: detection of shift mutations.
#@Eyal Seroussi,Micha Ron,Darek Kedra
#t2002
#cBioinformatics
#index765844
#% 
#!
  
#*Multiple flexible structure alignment using partial order graphs.
#@Yuzhen Ye,Adam Godzik
#t2005
#cBioinformatics
#index765845
#% 
#!
  
#*CellML2SBML: conversion of CellML into SBML.
#@Maria J. Schilstra,Lu Li,Joanne Matthews,Andrew Finney,Michael Hucka,Nicolas Le Novère
#t2006
#cBioinformatics
#index765846
#% 
#!
  
#*Recognition and analysis of protein-coding genes in severe acute respiratory syndrome associated coronavirus.
#@Ramakant Sharma,Jitendra Kumar Maheshwari,Tulika Prakash,Debasis Dash,Samir K. Brahmachari
#t2004
#cBioinformatics
#index765847
#% 
#!
  
#*Graphical interface to the genetic network database GeNet.
#@V. N. Serov,Alexander V. Spirov,Maria Samsonova
#t1998
#cBioinformatics
#index765849
#% 
#!
  
#*The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions.
#@Yi-Kuo Yu,Stephen F. Altschul
#t2005
#cBioinformatics
#index765850
#% 
#!
  
#*PROFbval: predict flexible and rigid residues in proteins.
#@Avner Schlessinger,Guy Yachdav,Burkhard Rost
#t2006
#cBioinformatics
#index765851
#% 
#!
  
#*ASAP: analysis of peptide composition.
#@Xavier Serra-Hartmann,Xavier Rebordosa,Jaume Piñol,Enrique Querol,Marc A. Martí-Renom
#t2000
#cBioinformatics
#index765852
#% 
#!
  
#*A novel approach to local reliability of sequence alignments.
#@Maximilian Schlosshauer,Mattias Ohlsson
#t2002
#cBioinformatics
#index765853
#% 
#!
  
#*A web-based tool for principal component and significance analysis of microarray data.
#@Alexei A. Sharov,Dawood B. Dudekula,Minoru S. H. Ko
#t2005
#cBioinformatics
#index765854
#% 
#!
  
#*Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology.
#@Henning Schmidt,Mats Jirstrand
#t2006
#cBioinformatics
#index765855
#% 
#!
  
#*SECOST: sequence-conformation-structure database for amino acid residues in proteins.
#@Oleg Shats,Iosif I. Vaisman,A. Shats,Simon Sherman
#t1999
#cBioinformatics
#index765856
#% 
#!
  
#*TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.
#@Heiko A. Schmidt,Korbinian Strimmer,Martin Vingron,Arndt von Haeseler
#t2002
#cBioinformatics
#index765857
#% 
#!
  
#*SARGE: a tool for creation of putative genetic networks.
#@O. J. Shaw,Colin Harwood,L. Jason Steggles,Anil Wipat
#t2004
#cBioinformatics
#index765858
#% 
#!
  
#*Capturing biological information with class?Cresponsibility?Ccollaboration cards.
#@Daniel Shegogue,W. Jim Zheng
#t2005
#cBioinformatics
#index765860
#% 
#!
  
#*Object-oriented biological system integration: a SARS coronavirus example.
#@Daniel Shegogue,W. Jim Zheng
#t2005
#cBioinformatics
#index765862
#% 
#!
  
#*Ramachandran plot on the web.
#@S. S. Sheik,Prasanna Sundararajan,A. S. Z. Hussain,Krishna Sekar
#t2002
#cBioinformatics
#index765864
#% 
#!
  
#*CAP: Conformation Angles Package - Displaying the Conformation Angles of Side Chains in Proteins.
#@S. S. Sheik,Prasanna Sundararajan,V. Shanthi,Krishna Sekar
#t2003
#cBioinformatics
#index765866
#% 
#!
  
#*GandrKB--ontological microarray annotation and visualization.
#@Daniel Schober,Ulf Leser,Martin Zenke,Jens Reich
#t2005
#cBioinformatics
#index765867
#% 
#!
  
#*Local modeling of global interactome networks.
#@Denise Scholtens,Marc Vidal,Robert Gentleman
#t2005
#cBioinformatics
#index765869
#% 
#!
  
#*Ensemble classifier for protein fold pattern recognition.
#@Hong-Bin Shen,Kuo-Chen Chou
#t2006
#cBioinformatics
#index765870
#% 
#!
  
#*Metabolite fingerprinting: detecting biological features by independent component analysis.
#@Matthias Scholz,S. Gatzek,Alisdair R. Sterling,Oliver Fiehn,Joachim Selbig
#t2004
#cBioinformatics
#index765871
#% 
#!
  
#*RankViaContact: ranking and visualization of amino acid contacts.
#@Bairong Shen,Mauno Vihinen
#t2003
#cBioinformatics
#index765872
#% 
#!
  
#*Non-linear PCA: a missing data approach.
#@Matthias Scholz,Fatma Kaplan,Charles L. Guy,Joachim Kopka,Joachim Selbig
#t2005
#cBioinformatics
#index765873
#% 
#!
  
#*Similarity of position frequency matrices for transcription factor binding sites.
#@Dustin E. Schones,Pavel Sumazin,Michael Q. Zhang
#t2005
#cBioinformatics
#index765875
#% 
#!
  
#*Efficient filtering methods for clustering cDNAs with spliced sequence alignment.
#@Tetsuo Shibuya,Hisashi Kashima,Akihiko Konagaya
#t2004
#cBioinformatics
#index765876
#% 
#!
  
#*PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources.
#@Adrian J. Shepherd,Nigel J. Martin,Roger G. Johnson,Paul Kellam,Christine A. Orengo
#t2002
#cBioinformatics
#index765878
#% 
#!
  
#*Compensation for nucleotide bias in a genome by representation as a discrete channel with noise.
#@Mark J. Schreiber,Chris M. Brown
#t2002
#cBioinformatics
#index765879
#% 
#!
  
#*A simple and efficient algorithm for gene selection using sparse logistic regression.
#@Shirish Krishnaj Shevade,S. Sathiya Keerthi
#t2003
#cBioinformatics
#index765880
#% 
#!
  
#*MAVisto: a tool for the exploration of network motifs.
#@Falk Schreiber,Henning Schwöbbermeyer
#t2005
#cBioinformatics
#index765881
#% 
#!
  
#*OligoFaktory: a visual tool for interactive oligonucleotide design.
#@Colas Schretter,Michel C. Milinkovitch
#t2006
#cBioinformatics
#index765883
#% 
#!
  
#*In silico fine-mapping: narrowing disease-associated loci by intergenomics.
#@Pablo Serrano-Fernández,Saleh M. Ibrahim,Dirk Koczan,Uwe K. Zettl,Steffen Möller
#t2005
#cBioinformatics
#index765884
#% 
#!
  
#*Distribution of information in biomedical abstracts and full-text publications.
#@Martijn J. Schuemie,Marc Weeber,Bob J. A. Schijvenaars,Erik M. van Mulligen,C. Christiaan van der Eijk,Rob Jelier,Barend Mons,Jan A. Kors
#t2004
#cBioinformatics
#index765885
#% 
#!
  
#*Constrained clusters of gene expression profiles with pathological features.
#@Jun Sese,Yukinori Kurokawa,Morito Monden,Kikuya Kato,Shinichi Morishita
#t2004
#cBioinformatics
#index765886
#% 
#!
  
#*Inference of transcriptional regulatory network by two-stage constrained space factor analysis.
#@Tianwei Yu,Ker-Chau Li
#t2005
#cBioinformatics
#index765887
#% 
#!
  
#*Discovering disease-genes by topological features in human protein-protein interaction network.
#@Jianzhen Xu,Yongjin Li
#t2006
#cBioinformatics
#index765890
#% 
#!
  
#*Visualizing profile-profile alignment: pairwise HMM logos.
#@Benjamin Schuster-Böckler,Alex Bateman
#t2005
#cBioinformatics
#index765891
#% 
#!
  
#*ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text.
#@Burr Settles
#t2005
#cBioinformatics
#index765892
#% 
#!
  
#*SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.
#@Zhike Zi,Edda Klipp
#t2006
#cBioinformatics
#index765893
#% 
#!
  
#*Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae.
#@Stefan Schuster,Thomas Pfeiffer,Ferdinand Moldenhauer,Ina Koch,Thomas Dandekar
#t2002
#cBioinformatics
#index765894
#% 
#!
  
#*GPCR-GRAPA-LIB-a refined library of hidden Markov Models for annotating GPCRs.
#@Ron Shigeta,Melissa S. Cline,Guoying Liu,Michael A. Siani-Rose
#t2003
#cBioinformatics
#index765897
#% 
#!
  
#*Bloader - a batch loader application for MIAMExpress.
#@Christian Schwager,Jonathon Blake
#t2005
#cBioinformatics
#index765898
#% 
#!
  
#*Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks.
#@Nikolaos G. Sgourakis,Pantelis G. Bagos,Stavros J. Hamodrakas
#t2005
#cBioinformatics
#index765899
#% 
#!
  
#*A Novel algorithm for identifying low-complexity regions in a protein sequence.
#@Xuehui Li,Tamer Kahveci
#t2006
#cBioinformatics
#index765900
#% 
#!
  
#*Protein structure comparison by probability-based matching of secondary structure elements.
#@Edward S. C. Shih,Ming-Jing Hwang
#t2003
#cBioinformatics
#index765902
#% 
#!
  
#*FingerPRINTScan: intelligent searching of the PRINTS motif database.
#@Philip Scordis,Darren R. Flower,Terri K. Attwood
#t1999
#cBioinformatics
#index765903
#% 
#!
  
#*Effects of pooling mRNA in microarray class comparisons.
#@Joanna H. Shih,Aleksandra M. Michalowska,Kevin Dobbin,Yumei Ye,Ting Hu Qiu,Jeffrey E. Green
#t2004
#cBioinformatics
#index765904
#% 
#!
  
#*The Hera database and its use in the characterization of endoplasmic reticulum proteins.
#@M. Scott,Guoqing Lu,Michael T. Hallett,David Thomas
#t2004
#cBioinformatics
#index765905
#% 
#!
  
#*CONSEL: for assessing the confidence of phylogenetic tree selection.
#@Hidetoshi Shimodaira,Masami Hasegawa
#t2001
#cBioinformatics
#index765906
#% 
#!
  
#*Reading the book of life.
#@David B. Searls
#t2001
#cBioinformatics
#index765907
#% 
#!
  
#*A new algorithm for detecting low-complexity regions in protein sequences.
#@Sung W. Shin,Sam Kim
#t2005
#cBioinformatics
#index765908
#% 
#!
  
#*QTL Express: mapping quantitative trait loci in simple and complex pedigrees.
#@George Seaton,Chris S. Haley,Sara A. Knott,Mike Kearsey,Peter M. Visscher
#t2002
#cBioinformatics
#index765913
#% 
#!
  
#*Finding prokaryotic genes by the `frame-by-frame' algorithm: targeting gene starts and overlapping genes.
#@Anton M. Shmatkov,Arik A. Melikyan,Felix L. Chernousko,Mark Borodovsky
#t1999
#cBioinformatics
#index765914
#% 
#!
  
#*A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosis.
#@Marc Sebban,I. Mokrousov,N. Rastogi,C. Sola
#t2002
#cBioinformatics
#index765915
#% 
#!
  
#*Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks.
#@Ilya Shmulevich,Edward R. Dougherty,Seungchan Kim,Wei Zhang
#t2002
#cBioinformatics
#index765916
#% 
#!
  
#*Collateral missing value imputation: a new robust missing value estimation algorithm for microarray data.
#@Muhammad Shoaib B. Sehgal,Iqbal Gondal,Laurence Dooley
#t2005
#cBioinformatics
#index765917
#% 
#!
  
#*Poorly conserved ORFs in the genome of the archaea Halobacterium sp. NRC-1 correspond to expressed proteins.
#@Hagay Shmuely,E. Dinitz,I. Dahan,Jerry Eichler,D. Fischer,Boaz Shaanan
#t2004
#cBioinformatics
#index765918
#% 
#!
  
#*Decision tree-based formation of consensus protein secondary structure prediction.
#@Joachim Selbig,Heinz-Theodor Mevissen,Thomas Lengauer
#t1999
#cBioinformatics
#index765919
#% 
#!
  
#*STAM: simple Transmembrane Alignment Method.
#@Yinon Shafrir,H. Robert Guy
#t2004
#cBioinformatics
#index765920
#% 
#!
  
#*MLR-tagging: informative SNP selection for unphased genotypes based on multiple linear regression.
#@Jingwu He,Alexander Zelikovsky
#t2006
#cBioinformatics
#index765921
#% 
#!
  
#*Rapid simulation and analysis of isotopomer distributions using constraints based on enzyme mechanisms: an example from HT29 cancer cells.
#@Vitaly A. Selivanov,Ludmilla E. Meshalkina,Olga N. Solovjeva,Philip W. Kuchel,Antonio Ramos-Montoya,German A. Kochetov,Paul W.-N. Lee,Marta Cascante
#t2005
#cBioinformatics
#index765922
#% 
#!
  
#*LSAT: learning about alternative transcripts in MEDLINE.
#@Parantu K. Shah,Peer Bork
#t2006
#cBioinformatics
#index765923
#% 
#!
  
#*Corrigendum.
#@
#t2006
#cBioinformatics
#index765924
#% 
#!
  
#*An optimized algorithm for flux estimation from isotopomer distribution in glucose metabolites.
#@Vitaly A. Selivanov,Joaquim Puigjaner,Antonio Sillero,Josep J. Centelles,Antonio Ramos-Montoya,Paul W.-N. Lee,Marta Cascante
#t2004
#cBioinformatics
#index765925
#% 
#!
  
#*ayesian automatic relevance determination algorithms for classifying gene expression data.
#@Ilya Shmulevich,Edward R. Dougherty,Wei Zhang
#t2002
#cBioinformatics
#index765926
#% 
#!
  
#*EASY-an Expert Analysis SYstem for interpreting database search outputs.
#@J. N. Selley,J. Swift,Terri K. Attwood
#t2001
#cBioinformatics
#index765927
#% 
#!
  
#*Establishing a method of vector contamination identification in database sequences.
#@G. A. Seluja,Andrew D. Farmer,Mia McLeod,Carol Harger,P. A. Schad
#t1999
#cBioinformatics
#index765929
#% 
#!
  
#*Phylo-VISTA: interactive visualization of multiple DNA sequence alignments.
#@Nameeta Shah,Olivier Couronne,Len A. Pennacchio,Michael Brudno,Serafim Batzoglou,E. Wes Bethel,Edward M. Rubin,Bernd Hamann,Inna Dubchak
#t2004
#cBioinformatics
#index765930
#% 
#!
  
#*Binary analysis and optimization-based normalization of gene expression data.
#@Ilya Shmulevich,Wei Zhang
#t2002
#cBioinformatics
#index765932
#% 
#!
  
#*Supertree algorithms for ancestral divergence dates and nested taxa.
#@Charles Semple,Philip Daniel,Wim Hordijk,Roderic D. M. Page,Mike A. Steel
#t2004
#cBioinformatics
#index765933
#% 
#!
  
#*In silico identification of transcripts and SNPs from a region of 4p linked with bipolar affective disorder.
#@C. A. M. Semple,S. W. Morris,David J. Porteous,Kathryn L. Evans
#t2000
#cBioinformatics
#index765935
#% 
#!
  
#*GOR V server for protein secondary structure prediction.
#@Taner Z. Sen,Robert L. Jernigan,Jean Garnier,Andrzej Kloczkowski
#t2005
#cBioinformatics
#index765937
#% 
#!
  
#*Data exploration tools for the Gene Ontology database.
#@Elizabeth Shoop,Paulo Casaes,Getiria Onsongo,Lisa Lesnett,Erla Osk Petursdottir,Edward Kofi Yeboah Donkor,Dennis Tkach,Michael Cosimini
#t2004
#cBioinformatics
#index765938
#% 
#!
  
#*CLENCH: a program for calculating Cluster ENriCHment using the Gene Ontology.
#@N. H. Shah,Nina V. Fedoroff
#t2004
#cBioinformatics
#index765939
#% 
#!
  
#*Corrigendum.
#@
#t2006
#cBioinformatics
#index765940
#% 
#!
  
#*The-more-the-better and the-less-the-better.
#@Wentian Li
#t2006
#cBioinformatics
#index765942
#% 
#!
  
#*SNPsFinder - a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes.
#@Jian Song,Yan Xu,P. Scott White,Kevin W. P. Miller,Murray Wolinsky
#t2005
#cBioinformatics
#index765944
#% 
#!
  
#*The fiction of function.
#@Jeff Shrager
#t2003
#cBioinformatics
#index765945
#% 
#!
  
#*Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data.
#@Eduardo D. Sontag,Anatoly Kiyatkin,Boris N. Kholodenko
#t2004
#cBioinformatics
#index765948
#% 
#!
  
#*JavaShade: multiple sequence alignment box-and-shading on the World Wide Web.
#@M. R. Southern,A. P. Lewis
#t1998
#cBioinformatics
#index765950
#% 
#!
  
#*Chemometric Modelling based on 2D-Fluorescence Spectra without a Calibration Measurement.
#@Dörte Solle,David Geissler,Eckbert Stärk,Thomas Scheper,Bernd Hitzmann
#t2003
#cBioinformatics
#index765952
#% 
#!
  
#*Flexible empirical Bayes models for differential gene expression.
#@Kenneth Lo,Raphael Gottardo
#t2007
#cBioinformatics
#index765953
#% 
#!
  
#*Progressive peak clustering in GC-MS Metabolomic experiments applied to parasites.
#@David P. De Souza,Eleanor C. Saunders,Malcolm J. McConville,Vladimir A. Likic
#t2006
#cBioinformatics
#index765955
#% 
#!
  
#*3Dee: a database of protein structural domains.
#@Asim S. Siddiqui,Uwe Dengler,Geoffrey J. Barton
#t2001
#cBioinformatics
#index765956
#% 
#!
  
#*Limits of homology detection by pairwise sequence comparison.
#@Rainer Spang,Martin Vingron
#t2001
#cBioinformatics
#index765957
#% 
#!
  
#*MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.
#@Sven Siebert,Rolf Backofen
#t2005
#cBioinformatics
#index765958
#% 
#!
  
#*Statistics of large-scale sequence searching.
#@Rainer Spang,Martin Vingron
#t1998
#cBioinformatics
#index765959
#% 
#!
  
#*A comparison of cluster analysis methods using DNA methylation data.
#@Kimberly D. Siegmund,Peter W. Laird,Ite A. Laird-Offringa
#t2004
#cBioinformatics
#index765960
#% 
#!
  
#*Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants.
#@Michael E. Sparks,Volker Brendel
#t2005
#cBioinformatics
#index765961
#% 
#!
  
#*Discrete simulation of regulatory homo- and heterodimerization in the apoptosis effector phase.
#@Christian Siehs,Rainer Oberbauer,Gert Mayer,Arno Lukas,Bernd Mayer
#t2002
#cBioinformatics
#index765962
#% 
#!
  
#*Detection of a surface-exposed PEST like sequence in the metabotropic glutamate receptor mGluR1.
#@M. M. Soloviev
#t2000
#cBioinformatics
#index765963
#% 
#!
  
#*CASPAR: a hierarchical Bayesian approach to predict survival times in cancer from gene expression data.
#@
#t2007
#cBioinformatics
#index765964
#% 
#!
  
#*ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources.
#@Adam C. Siepel,Andrew D. Farmer,Andrew N. Tolopko,Mingzhe Zhuang,Pedro Mendes,William D. Beavis,Bruno W. S. Sobral
#t2001
#cBioinformatics
#index765965
#% 
#!
  
#*MaxSub: an automated measure for the assessment of protein structure prediction quality.
#@Naomi Siew,Arne Elofsson,Leszek Rychlewski,Daniel Fischer
#t2000
#cBioinformatics
#index765967
#% 
#!
  
#*Network neighborhood analysis with the multi-node topological overlap measure.
#@Ai Li,Steve Horvath
#t2007
#cBioinformatics
#index765969
#% 
#!
  
#*Systematic analysis of snake neurotoxins' functional classification using a data warehousing approach.
#@Joyce Phui Yee Siew,Asif M. Khan,Paul T. J. Tan,Judice L. Y. Koh,Seng Hong Seah,Chuay Yeng Koo,Siaw Ching Chai,Arunmozhiarasi Armugam,Vladimir Brusic,Kandiah Jeyaseelan
#t2004
#cBioinformatics
#index765970
#% 
#!
  
#*ECCB 2006 Organization.
#@
#t2007
#cBioinformatics
#index765972
#% 
#!
  
#*PATRI-paternity inference using genetic data.
#@J. Signorovitch,R. Nielsen
#t2002
#cBioinformatics
#index765973
#% 
#!
  
#*Least absolute regression network analysis of the murine osteoblast differentiation network.
#@Eugene P. van Someren,B. L. T. Vaes,W. T. Steegenga,A. M. Sijbers,Koen J. Dechering,Marcel J. T. Reinders
#t2006
#cBioinformatics
#index765974
#% 
#!
  
#*ProRule: a new database containing functional and structural information on PROSITE profiles.
#@Christian J. A. Sigrist,Edouard De Castro,Petra S. Langendijk-Genevaux,Virginie Le Saux,Amos Bairoch,Nicolas Hulo
#t2005
#cBioinformatics
#index765975
#% 
#!
  
#*MaSTerClass: a case-based reasoning system for the classification of biomedical terms.
#@Irena Spasic,Sophia Ananiadou,Jun-ichi Tsujii
#t2005
#cBioinformatics
#index765976
#% 
#!
  
#*Predicting protein structure classes from function predictions.
#@Ingolf Sommer,Jörg Rahnenführer,Francisco S. Domingues,U. de Lichtenberg,Thomas Lengauer
#t2004
#cBioinformatics
#index765978
#% 
#!
  
#*Discovering tightly regulated and differentially expressed gene sets in whole genome expression data.
#@Chun Ye,Eleazar Eskin
#t2007
#cBioinformatics
#index765979
#% 
#!
  
#*PANAL: an integrated resource for Protein sequence ANALysis.
#@Kevin A. T. Silverstein,Alan Kilian,John L. Freeman,James E. Johnson,Ihab A. Awad,Ernest F. Retzel
#t2000
#cBioinformatics
#index765980
#% 
#!
  
#*Confidence measures for protein fold recognition.
#@Ingolf Sommer,Alexander Zien,Niklas von Öhsen,Ralf Zimmer,Thomas Lengauer
#t2002
#cBioinformatics
#index765981
#% 
#!
  
#*ECCB 2006.
#@
#t2007
#cBioinformatics
#index765982
#% 
#!
  
#*MetaFam: a unified classification of protein families. I. Overview and statistics.
#@Kevin A. T. Silverstein,Elizabeth Shoop,James E. Johnson,Ernest F. Retzel
#t2001
#cBioinformatics
#index765983
#% 
#!
  
#*A Status Report on Mage.
#@Paul T. Spellman
#t2005
#cBioinformatics
#index765984
#% 
#!
  
#*Prediction of protein solvent accessibility using fuzzy k-nearest neighbor method.
#@Jaehyun Sim,Seung-Yeon Kim,Julian Lee
#t2005
#cBioinformatics
#index765985
#% 
#!
  
#*Exact Significance Levels for the Maximum 2 Method of Detecting Recombination.
#@Mark Spencer
#t2003
#cBioinformatics
#index765986
#% 
#!
  
#*ProDDO: a database of disordered proteins from the Protein Data Bank (PDB).
#@Kim Lan Sim,Tomoyuki Uchida,Satoru Miyano
#t2001
#cBioinformatics
#index765987
#% 
#!
  
#*SelSim: a program to simulate population genetic data with natural selection and recombination.
#@Chris C. A. Spencer,Graham Coop
#t2004
#cBioinformatics
#index765988
#% 
#!
  
#*Superior feature-set ranking for small samples using bolstered error estimation.
#@Chao Sima,Ulisses Braga-Neto,Edward R. Dougherty
#t2005
#cBioinformatics
#index765989
#% 
#!
  
#*Neural network predicts sequence of TP53 gene based on DNA chip.
#@Jeppe S. Spicker,Friedrik Wikman,Ming-Lan Lu,Carlos Cordon-Cardo,Christopher T. Workman,Torben F. Ørntoft,Søren Brunak,Steen Knudsen
#t2002
#cBioinformatics
#index765990
#% 
#!
  
#*Combining pattern discovery and discriminant analysis to predict gene co-regulation.
#@N. Simonis,Shoshana J. Wodak,G. N. Cohen,Jacques van Helden
#t2004
#cBioinformatics
#index765991
#% 
#!
  
#*JCell - a Java-based framework for inferring regulatory networks from time series data.
#@Christian Spieth,Jochen Supper,Felix Streichert,Nora Speer,Andreas Zell
#t2006
#cBioinformatics
#index765992
#% 
#!
  
#*ROCR: visualizing classifier performance in R.
#@Tobias Sing,Oliver Sander,Niko Beerenwinkel,Thomas Lengauer
#t2005
#cBioinformatics
#index765993
#% 
#!
  
#*VisCoSe: visualization and comparison of consensus sequences.
#@Michael Spitzer,Georg Fuellen,Paul Cullen,Stefan Lorkowski
#t2004
#cBioinformatics
#index765994
#% 
#!
  
#*TMRPres2D: high quality visual representation of transmembrane protein models.
#@Ioannis C. Spyropoulos,Theodore Liakopoulos,Pantelis G. Bagos,Stavros J. Hamodrakas
#t2004
#cBioinformatics
#index765998
#% 
#!
  
#*ProPred: prediction of HLA-DR binding sites.
#@Harpreet Singh,G. P. S. Raghava
#t2001
#cBioinformatics
#index765999
#% 
#!
  
#*Predicting GPCR-G-protein coupling using hidden Markov models.
#@Kodangattil R. Sreekumar,You-Ping Huang,Mark H. Pausch,Kamalakar Gulukota
#t2004
#cBioinformatics
#index766000
#% 
#!
  
#*ProPred1: Prediction of Promiscuous MHC Class-I Binding Sites.
#@Harpreet Singh,G. P. S. Raghava
#t2003
#cBioinformatics
#index766001
#% 
#!
  
#*PIR-ALN: a database of protein sequence alignments.
#@Geetha Y. Srinivasarao,Lai-Su L. Yeh,Christopher R. Marzec,Bruce C. Orcutt,Winona C. Barker
#t1999
#cBioinformatics
#index766002
#% 
#!
  
#*HaptenDB: a comprehensive database of haptens, carrier proteins and anti-hapten antibodies.
#@Mahender Kumar Singh,Shilpy Srivastava,G. P. S. Raghava,Grish C. Varshney
#t2006
#cBioinformatics
#index766003
#% 
#!
  
#*Class prediction and discovery using gene microarray and proteomics mass spectroscopy data: curses, caveats, cautions.
#@Ray L. Somorjai,B. Dolenko,Richard Baumgartner
#t2003
#cBioinformatics
#index766004
#% 
#!
  
#*Clustering threshold gradient descent regularization: with applications to microarray studies.
#@Shuangge Ma,Jian Huang
#t2007
#cBioinformatics
#index766005
#% 
#!
  
#*XQTav: an XQuery processor for Taverna environment.
#@Jacek Sroka,Grzegorz Kaczor,Jerzy Tyszkiewicz,Andrzej M. Kierzek
#t2006
#cBioinformatics
#index766007
#% 
#!
  
#*An experimental evaluation of a loop versus a reference design for two-channel microarrays.
#@Veronica Vinciotti,Raya Khanin,Davide D'Alimonte,Xiaohui Liu,N. Cattini,G. Hotchkiss,G. Bucca,O. de Jesus,J. Rasaiyaah,Colin P. Smith,Paul Kellam,Ernst Wit
#t2005
#cBioinformatics
#index766009
#% 
#!
  
#*The Database of Quantitative Cellular Signaling: management and analysis of chemical kinetic models of signaling networks.
#@Sudhir Sivakumaran,Sridhar Hariharaputran,Jyoti Mishra,Upinder S. Bhalla
#t2003
#cBioinformatics
#index766010
#% 
#!
  
#*Phylogenomic inference of protein molecular function: advances and challenges.
#@Kimmen Sjölander
#t2004
#cBioinformatics
#index766014
#% 
#!
  
#*Application of the multiensemble sampling to the equilibrium folding of proteins.
#@Hyeon S. Son,Seung-Yeon Kim,Jooyoung Lee,Kyu-Kwang Han
#t2006
#cBioinformatics
#index766015
#% 
#!
  
#*Analysis of array CGH data for cancer studies using fused quantile regression.
#@Youjuan Li,Ji Zhu
#t2007
#cBioinformatics
#index766016
#% 
#!
  
#*Scanning microarrays at multiple intensities enhances discovery of differentially expressed genes.
#@David S. Skibbe,Xiujuan Wang,Xuefeng Zhao,Lisa A. Borsuk,Dan Nettleton,Patrick S. Schnable
#t2006
#cBioinformatics
#index766019
#% 
#!
  
#*POSBIOTM-NER: a trainable biomedical named-entity recognition system.
#@Yu Song,Eunju Kim,Gary Geunbae Lee,Byoung-Kee Yi
#t2005
#cBioinformatics
#index766020
#% 
#!
  
#*Genome-wide selection of tag SNPs using multiple-marker correlation.
#@K. Hao
#t2007
#cBioinformatics
#index766021
#% 
#!
  
#*ConFind: a robust tool for conserved sequence identification.
#@James A. Smagala,Erica D. Dawson,Martin Mehlmann,Michael B. Townsend,Robert D. Kuchta,Kathy L. Rowlen
#t2005
#cBioinformatics
#index766022
#% 
#!
  
#*Adaptive quality-based clustering of gene expression profiles.
#@Frank De Smet,Janick Mathys,Kathleen Marchal,Gert Thijs,Bart De Moor,Yves Moreau
#t2002
#cBioinformatics
#index766024
#% 
#!
  
#*RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees.
#@Alexandros Stamatakis,Thomas Ludwig,Harald Meier
#t2005
#cBioinformatics
#index766025
#% 
#!
  
#*GO-Mapper: functional analysis of gene expression data using the expression level as a score to evaluate Gene Ontology terms.
#@Marcel Smid,Lambert C. J. Dorssers
#t2004
#cBioinformatics
#index766026
#% 
#!
  
#*AGML Central: web based gel proteomic infrastructure.
#@Romesh Stanislaus,Chuming Chen,Jennifer Franklin,John M. Arthur,Jonas S. Almeida
#t2005
#cBioinformatics
#index766027
#% 
#!
  
#*Venn Mapping: clustering of heterologous microarray data based on the number of co-occurring differentially expressed genes.
#@Marcel Smid,Lambert C. J. Dorssers,Guido Jenster
#t2003
#cBioinformatics
#index766028
#% 
#!
  
#*Time to defend what we have won
#@David J. States
#t2001
#cBioinformatics
#index766029
#% 
#!
  
#*ANOVA-simultaneous component analysis (ASCA): a new tool for analyzing designed metabolomics data.
#@Age K. Smilde,Jeroen J. Jansen,Huub C. J. Hoefsloot,Robert-Jan A. N. Lamers,Jan van der Greef,Marieke E. Timmerman
#t2005
#cBioinformatics
#index766030
#% 
#!
  
#*A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis.
#@Alexander R. Statnikov,Constantin F. Aliferis,Ioannis Tsamardinos,Douglas Hardin,Shawn Levy
#t2005
#cBioinformatics
#index766031
#% 
#!
  
#*The reduction of large molecular profiles to informative components using a Genetic Algorithm.
#@Federico M. Stefanini,A. Camussi
#t2000
#cBioinformatics
#index766033
#% 
#!
  
#*Digital reviews in molecular biology: approaches to structured digital publication.
#@David L. Steffen,Alan E. Levine,S. Yarus,R. A. Baasiri,D. A. Wheeler
#t2000
#cBioinformatics
#index766039
#% 
#!
  
#*RNAshapes: an integrated RNA analysis package based on abstract shapes.
#@Peter Steffen,Björn Voß,Marc Rehmsmeier,Jens Reeder,Robert Giegerich
#t2006
#cBioinformatics
#index766041
#% 
#!
  
#*Automated image analysis for array hybridization experiments.
#@Matthias Steinfath,Wasco Wruck,Henrik Seidel,Hans Lehrach,Uwe Radelof,John O'Brien
#t2001
#cBioinformatics
#index766043
#% 
#!
  
#*ANDY: a general, fault-tolerant tool for database searching on computer clusters.
#@Andrew Smith,John-Marc Chandonia,Steven E. Brenner
#t2006
#cBioinformatics
#index766044
#% 
#!
  
#*Hypothesis-driven approach to predict transcriptional units from gene expression data.
#@Dirk Steinhauser,Björn H. Junker,Alexander Lüdemann,Joachim Selbig,Joachim Kopka
#t2004
#cBioinformatics
#index766045
#% 
#!
  
#*CSB.DB: a comprehensive systems-biology database.
#@Dirk Steinhauser,Björn Usadel,Alexander Lüdemann,Oliver Thimm,Joachim Kopka
#t2004
#cBioinformatics
#index766047
#% 
#!
  
#*MagicMatch - cross-referencing sequence identifiers across databases.
#@Mike Smith,Victor Kunin,Leon Goldovsky,Anton J. Enright,Christos A. Ouzounis
#t2005
#cBioinformatics
#index766048
#% 
#!
  
#*Optimal enhancement of immune response.
#@Robert F. Stengel,Raffaele M. Ghigliazza,Nilesh V. Kulkarni
#t2002
#cBioinformatics
#index766049
#% 
#!
  
#*A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas.
#@Maria Stepanova,Tatiana Tiazhelova,Mikle Skoblov,Ancha V. Baranova
#t2005
#cBioinformatics
#index766051
#% 
#!
  
#*Mapping physiological states from microarray expression measurements.
#@Gregory Stephanopoulos,Daehee Hwang,William A. Schmitt,Jatin Misra,George Stephanopoulos
#t2002
#cBioinformatics
#index766053
#% 
#!
  
#*MedPost: a part-of-speech tagger for bioMedical text.
#@Lawrence H. Smith,Thomas C. Rindflesch,W. John Wilbur
#t2004
#cBioinformatics
#index766054
#% 
#!
  
#*Can transcriptome size be estimated from SAGE catalogs?
#@Michael D. Stern,Sergey V. Anisimov,Kenneth R. Boheler
#t2003
#cBioinformatics
#index766057
#% 
#!
  
#*A major component approach to presenting consensus sequences.
#@D. K. Smith,H. Xue
#t1998
#cBioinformatics
#index766058
#% 
#!
  
#*Visualization of near-optimal sequence alignments.
#@Michael E. Smoot,Stephanie A. Guerlain,William R. Pearson
#t2004
#cBioinformatics
#index766060
#% 
#!
  
#*Observing and Interpreting Correlations in Metabolic Networks.
#@Ralph E. Steuer,Jürgen Kurths,Oliver Fiehn,Wolfram Weckwerth
#t2003
#cBioinformatics
#index766061
#% 
#!
  
#*TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources.
#@Robert Stevens,Patricia G. Baker,Sean Bechhofer,Gary Ng,Alex Jacoby,Norman W. Paton,Carole A. Goble,Andy Brass
#t2000
#cBioinformatics
#index766063
#% 
#!
  
#*Use of within-array replicate spots for assessing differential expression in microarray experiments.
#@Gordon K. Smyth,Joëlle Michaud,Hamish S. Scott
#t2005
#cBioinformatics
#index766064
#% 
#!
  
#*A classification of tasks in bioinformatics.
#@Robert Stevens,Carole A. Goble,Patricia G. Baker,Andy Brass
#t2001
#cBioinformatics
#index766065
#% 
#!
  
#*The effect of evenly spaced constant sites on the distribution of the random division of a molecular sequence.
#@P. H. Sneath
#t1998
#cBioinformatics
#index766066
#% 
#!
  
#*Molecular complexes at a glance: automated generation of two-dimensional complex diagrams.
#@Katrin Stierand,Patrick C. Maaß,Matthias Rarey
#t2006
#cBioinformatics
#index766067
#% 
#!
  
#*Automated analysis of interatomic contacts in proteins.
#@Vladimir Sobolev,A. Sorokine,Jaime Prilusky,E. E. Abola,Marvin Edelman
#t1999
#cBioinformatics
#index766068
#% 
#!
  
#*ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux cluster.
#@Gernot Stocker,Dietmar Rieder,Zlatko Trajanoski
#t2004
#cBioinformatics
#index766069
#% 
#!
  
#*TRAP: automated classification, quantification and annotation of tandemly repeated sequences.
#@Tiago José P. Sobreira,Alan M. Durham,Arthur Gruber
#t2006
#cBioinformatics
#index766070
#% 
#!
  
#*A relational schema for both array-based and SAGE gene expression experiments.
#@Christian J. Stoeckert Jr.,Angel Pizarro,Elisabetta Manduchi,M. Gibson,Brian P. Brunk,Jonathan Crabtree,Jonathan Schug,Shai Shen-Orr,G. Christian Overton
#t2001
#cBioinformatics
#index766075
#% 
#!
  
#*Z extensions to the RHMAPPER package.
#@Carol Soderlund,Timun Lau,Panos Deloukas
#t1998
#cBioinformatics
#index766076
#% 
#!
  
#*Identification of mixups among DNA sequencing plates.
#@Nikola Stojanovic,Jean L. Chang,Jessica Lehoczky,Michael C. Zody,Ken Dewar
#t2002
#cBioinformatics
#index766079
#% 
#!
  
#*Protein homology detection by HMM?CHMM comparison.
#@Johannes Söding
#t2005
#cBioinformatics
#index766080
#% 
#!
  
#*Identifying multiple alignment regions satisfying simple formulas and patterns.
#@Nikola Stojanovic,Ken Dewar
#t2004
#cBioinformatics
#index766081
#% 
#!
  
#*New methods for joint analysis of biological networks and expression data.
#@Florian Sohler,Daniel Hanisch,Ralf Zimmer
#t2004
#cBioinformatics
#index766084
#% 
#!
  
#*NIFAS: visual analysis of domain evolution in proteins.
#@Christian E. V. Storm,Erik L. L. Sonnhammer
#t2001
#cBioinformatics
#index766085
#% 
#!
  
#*Topology of small-world networks of protein?Cprotein complex structures.
#@Antonio del Sol,Hirotomo Fujihashi,Paul O'Meara
#t2005
#cBioinformatics
#index766086
#% 
#!
  
#*Automated ortholog inference from phylogenetic trees and calculation of orthology reliability.
#@Christian E. V. Storm,Erik L. L. Sonnhammer
#t2002
#cBioinformatics
#index766087
#% 
#!
  
#*SNPStats: a web tool for the analysis of association studies.
#@Xavier Solé,Elisabet Guinó,Joan Valls,Raquel Iniesta,Víctor Moreno
#t2006
#cBioinformatics
#index766088
#% 
#!
  
#*DNA binding sites: representation and discovery.
#@Gary D. Stormo
#t2000
#cBioinformatics
#index766089
#% 
#!
  
#*COMBOSA3D: combining sequence alignments with three-dimensional structures.
#@P. M. Stothard
#t2001
#cBioinformatics
#index766090
#% 
#!
  
#*Circular genome visualization and exploration using CGView.
#@Paul Stothard,David S. Wishart
#t2005
#cBioinformatics
#index766091
#% 
#!
  
#*Normalization of single-channel DNA array data by principal component analysis.
#@Radka Stoyanova,Troy D. Querec,Truman R. Brown,Christos Patriotis
#t2004
#cBioinformatics
#index766092
#% 
#!
  
#*Rose: generating sequence families.
#@Jens Stoye,Dirk Evers,Folker Meyer
#t1998
#cBioinformatics
#index766093
#% 
#!
  
#*Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX.
#@Lena Strömbäck,Patrick Lambrix
#t2005
#cBioinformatics
#index766098
#% 
#!
  
#*LigBase: a database of families of aligned ligand binding sites in known protein sequences and structures.
#@Ashley C. Stuart,Valentin A. Ilyin,Andrej Sali
#t2002
#cBioinformatics
#index766099
#% 
#!
  
#*Integrated gene and species phylogenies from unaligned whole genome protein sequences.
#@Gary W. Stuart,Karen Moffett,Steve Baker
#t2002
#cBioinformatics
#index766100
#% 
#!
  
#*Client-Server environment for high-performance gene expression data analysis.
#@Alexander Sturn,Bernhard Mlecnik,Roland Pieler,Johannes Rainer,Thomas Truskaller,Zlatko Trajanoski
#t2003
#cBioinformatics
#index766106
#% 
#!
  
#*Genesis: cluster analysis of microarray data.
#@Alexander Sturn,John Quackenbush,Zlatko Trajanoski
#t2002
#cBioinformatics
#index766107
#% 
#!
  
#*Inference of missing SNPs and information quantity measurements for haplotype blocks.
#@Shih-Chieh Su,C. C. Jay Kuo,Ting Chen
#t2005
#cBioinformatics
#index766108
#% 
#!
  
#*RankGene: identification of diagnostic genes based on expression data.
#@Yang Su,T. M. Murali,Vladimir Pavlovic,Michael Schaffer,Simon Kasif
#t2003
#cBioinformatics
#index766109
#% 
#!
  
#*Triplet repeats in human genome: distribution and their association with genes and other genomic regions.
#@Subbaya Subramanian,Vamsi M. Madgula,Ranjan George,Rakesh K. Mishra,Madhusudhan W. Pandit,Chanderashekar S. Kumar,Lalji Singh
#t2003
#cBioinformatics
#index766111
#% 
#!
  
#*Genome-wide analysis of Bkm sequences (GATA repeats): predominant association with sex chromosomes and potential role in higher order chromatin organization and function.
#@Subbaya Subramanian,Rakesh K. Mishra,Lalji Singh
#t2003
#cBioinformatics
#index766112
#% 
#!
  
#*BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny.
#@Marc A. Suchard,Benjamin D. Redelings
#t2006
#cBioinformatics
#index766113
#% 
#!
  
#*PALI: a database of alignments and phylogeny of homologous protein structures.
#@S. Sujatha,S. Balaji,Narayanaswamy Srinivasan
#t2001
#cBioinformatics
#index766117
#% 
#!
  
#*DWE: Discriminating Word Enumerator.
#@Pavel Sumazin,Gengxin Chen,Naoya Hata,Andrew D. Smith,Theresa Zhang,Michael Q. Zhang
#t2005
#cBioinformatics
#index766120
#% 
#!
  
#*Java-based application framework for visualization of gene regulatory region annotations.
#@Hao Sun,Ramana V. Davuluri
#t2004
#cBioinformatics
#index766121
#% 
#!
  
#*ADME-AP: a database of ADME associated proteins.
#@Li Zhi Sun,Zhi Liang Ji,Xin Chen,J. F. Wang,Yu Zong Chen
#t2002
#cBioinformatics
#index766122
#% 
#!
  
#*A Mathematical Programming Approach for Gene Selection and Tissue Classification.
#@Minghe Sun,Momiao Xiong
#t2003
#cBioinformatics
#index766123
#% 
#!
  
#*Refined phylogenetic profiles method for predicting protein-protein interactions.
#@Jingchun Sun,Jinlin Xu,Zhen Liu,Qi Liu,Aimin Zhao,Tieliu Shi,Yi-Xue Li
#t2005
#cBioinformatics
#index766124
#% 
#!
  
#*Identification of humoral immune responses in protein microarrays using DNA microarray data analysis techniques.
#@Suman Sundaresh,Denise L. Doolan,Siddiqua Hirst,Yunxiang Mu,Berkay Unal,D. Huw Davies,Philip L. Felgner,Pierre Baldi
#t2006
#cBioinformatics
#index766125
#% 
#!
  
#*INCA: synonymous codon usage analysis and clustering by means of self-organizing map.
#@Fran Supek,Kristian Vlahovicek
#t2004
#cBioinformatics
#index766126
#% 
#!
  
#*Estimating and comparing the rates of gene discovery and expressed sequence tag (EST) frequencies in EST surveys.
#@Edward Susko,Andrew J. Roger
#t2004
#cBioinformatics
#index766127
#% 
#!
  
#*DomCut: prediction of inter-domain linker regions in amino acid sequences.
#@Mikita Suyama,Osamu Ohara
#t2003
#cBioinformatics
#index766129
#% 
#!
  
#*BLAST2GENE: a comprehensive conversion of BLAST output into independent genes and gene fragments.
#@Mikita Suyama,David Torrents,Peer Bork
#t2004
#cBioinformatics
#index766131
#% 
#!
  
#*A probabilistic method for identifying start codons in bacterial genomes.
#@Baris E. Suzek,Maria D. Ermolaeva,Mark J. Schreiber,Steven Salzberg
#t2001
#cBioinformatics
#index766132
#% 
#!
  
#*ADAPTSITE: detecting natural selection at single amino acid sites.
#@Yoshiyuki Suzuki,Takashi Gojobori,Masatoshi Nei
#t2001
#cBioinformatics
#index766133
#% 
#!
  
#*Pvclust: an R package for assessing the uncertainty in hierarchical clustering.
#@Ryota Suzuki,Hidetoshi Shimodaira
#t2006
#cBioinformatics
#index766134
#% 
#!
  
#*Towards Optimal Views of Proteins.
#@Oscar Sverud,Robert M. MacCallum
#t2003
#cBioinformatics
#index766135
#% 
#!
  
#*Bifurcation analysis of the regulatory modules of the mammalian G1/S transition.
#@Maciej Swat,Alexander E. Kel,Hanspeter Herzel
#t2004
#cBioinformatics
#index766136
#% 
#!
  
#*Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases.
#@Morris A. Swertz,E. O. de Brock,Sacha A. F. T. van Hijum,Anne de Jong,Girbe Buist,Richard J. S. Baerends,Jan Kok,Oscar P. Kuipers,Ritsert C. Jansen
#t2004
#cBioinformatics
#index766137
#% 
#!
  
#*Resmap: automated representation of macromolecular interfaces as two-dimensional networks.
#@Liskin Swint-Kruse,Curties S. Brown
#t2005
#cBioinformatics
#index766138
#% 
#!
  
#*A friendly statistics package for microarray analysis.
#@P. Sykacek,R. A. Furlong,Gos Micklem
#t2005
#cBioinformatics
#index766139
#% 
#!
  
#*tuple_plot: Fast pairwise nucleotide sequence comparison with noise suppression.
#@Karol Szafranski,Niels Jahn,Matthias Platzer
#t2006
#cBioinformatics
#index766140
#% 
#!
  
#*Algorithms and software for support of gene identification experiments.
#@Sing-Hoi Sze,Mikhail A. Roytberg,Mikhail S. Gelfand,Andrey A. Mironov,Tatiana V. Astakhova,Pavel A. Pevzner
#t1998
#cBioinformatics
#index766141
#% 
#!
  
#*AuberGene - a sensitive genome alignment tool.
#@Radek Szklarczyk,Jaap Heringa
#t2006
#cBioinformatics
#index766142
#% 
#!
  
#*An RNA folding method capable of identifying pseudoknots and base triples.
#@Jack E. Tabaska,Robert B. Cary,Harold N. Gabow,Gary D. Stormo
#t1998
#cBioinformatics
#index766143
#% 
#!
  
#*Identifying the 3'-terminal exon in human DNA.
#@Jack E. Tabaska,Ramana V. Davuluri,Michael Q. Zhang
#t2001
#cBioinformatics
#index766144
#% 
#!
  
#*SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments.
#@Yasuo Tabei,Koji Tsuda,Taishin Kin,Kiyoshi Asai
#t2006
#cBioinformatics
#index766145
#% 
#!
  
#*Identification of DNA regulatory motifs using Bayesian variable selection.
#@Mahlet G. Tadesse,Marina Vannucci,Pietro Liò
#t2004
#cBioinformatics
#index766147
#% 
#!
  
#*Relational patterns of gene expression via non-metric multidimensional scaling analysis.
#@Y.-h. Taguchi,Y. Oono
#t2005
#cBioinformatics
#index766148
#% 
#!
  
#*AGenDA: homology-based gene prediction.
#@Leila Taher,Oliver Rinner,Saurabh Garg,Alexander Sczyrba,Michael Brudno,Serafim Batzoglou,Burkhard Morgenstern
#t2003
#cBioinformatics
#index766149
#% 
#!
  
#*Modified signal-to-noise: a new simple and practical gene filtering approach based on the concept of projective adaptive resonance theory (PART) filtering method.
#@Hiro Takahashi,Hiroyuki Honda
#t2006
#cBioinformatics
#index766151
#% 
#!
  
#*E-Cell 2: Multi-platform E-Cell simulation system.
#@Koichi Takahashi,N. Ishikawa,Y. Sadamoto,H. Sasamoto,S. Ohta,A. Shiozawa,Fumihiko Miyoshi,Yasuhiro Naito,Yoichi Nakayama,Masaru Tomita
#t2003
#cBioinformatics
#index766152
#% 
#!
  
#*Construction of robust prognostic predictors by using projective adaptive resonance theory as a gene filtering method.
#@Hiro Takahashi,Takeshi Kobayashi,Hiroyuki Honda
#t2005
#cBioinformatics
#index766153
#% 
#!
  
#*A multi-algorithm, multi-timescale method for cell simulation.
#@Kouichi Takahashi,Kazunari Kaizu,Bin Hu,Masaru Tomita
#t2004
#cBioinformatics
#index766154
#% 
#!
  
#*EUCLID: automatic classification of proteins in functional classes by their database annotations.
#@Javier Tamames,Christos A. Ouzounis,Georg Casari,Chris Sander,Alfonso Valencia
#t1998
#cBioinformatics
#index766155
#% 
#!
  
#*Separation of nearly identical repeats in shotgun assemblies using defined nucleotide positions, DNPs.
#@Martti T. Tammi,Erik Arner,Tom Britton,Björn Andersson
#t2002
#cBioinformatics
#index766156
#% 
#!
  
#*ReDiT: Repeat Discrepancy Tagger-a shotgun assembly finishing aid.
#@Martti T. Tammi,Erik Arner,Ellen Kindlund,Björn Andersson
#t2004
#cBioinformatics
#index766157
#% 
#!
  
#*Simple decision rules for classifying human cancers from gene expression profiles.
#@Aik Choon Tan,Daniel Q. Naiman,Lei Xu,Raimond L. Winslow,Donald Geman
#t2005
#cBioinformatics
#index766158
#% 
#!
  
#*Finding regions of significance in SELDI measurements for identifying protein biomarkers.
#@Chuen Seng Tan,Alexander Ploner,Andreas Quandt,Janne Lehtiö,Yudi Pawitan
#t2006
#cBioinformatics
#index766159
#% 
#!
  
#*Integrating time-course microarray gene expression profiles with cytotoxicity for identification of biomarkers in primary rat hepatocytes exposed to cadmium.
#@Yongxi Tan,Leming M. Shi,Saber M. Hussain,Jun Xu,Weida Tong,John M. Frazier,Charles Wang
#t2006
#cBioinformatics
#index766161
#% 
#!
  
#*Tagging gene and protein names in biomedical text.
#@Lorraine K. Tanabe,W. John Wilbur
#t2002
#cBioinformatics
#index766162
#% 
#!
  
#*Adplot: detection and visualization of repetitive patterns in complete genomes.
#@Akito Taneda
#t2004
#cBioinformatics
#index766163
#% 
#!
  
#*BarleyExpress: a web-based submission tool for enriched microarray database annotations.
#@Xiaoyun Tang,Lishuang Shen,Julie A. Dickerson
#t2005
#cBioinformatics
#index766164
#% 
#!
  
#*ESPD: a pattern detection model underlying gene expression profiles.
#@Chun Tang,Aidong Zhang,Murali Ramanathan
#t2004
#cBioinformatics
#index766165
#% 
#!
  
#*The GeneAround GO viewer.
#@Junko Tanoue,Masatoshi Yoshikawa,Shunsuke Uemura
#t2002
#cBioinformatics
#index766166
#% 
#!
  
#*Visualizing information across multidimensional post-genomic structured and textual databases.
#@Ying Tao,Carol Friedman,Yves A. Lussier
#t2005
#cBioinformatics
#index766167
#% 
#!
  
#*A robust neural networks approach for spatial and intensity-dependent normalization of cDNA microarray data.
#@A. L. Tarca,Janice E. K. Cooke
#t2005
#cBioinformatics
#index766168
#% 
#!
  
#*Reduced space hidden Markov model training.
#@C. Tarnas,Richard Hughey
#t1998
#cBioinformatics
#index766169
#% 
#!
  
#*Complete genomes in WWW Entrez: data representation and analysis.
#@Tatiana A. Tatusova,Ilene Karsch-Mizrachi,James Ostell
#t1999
#cBioinformatics
#index766171
#% 
#!
  
#*Automated management of gene discovery projects.
#@S. Taylor,T. Charles Hodgman,C. B. Littler,Roger A. Sayle,R. W. Gill,M. D. Oxer,C. H. O'Donnell,Andrew Lyall
#t1998
#cBioinformatics
#index766174
#% 
#!
  
#*SNP Chart: an integrated platform for visualization and interpretation of microarray genotyping data.
#@Scott J. Tebbutt,Igor V. Opushnyev,Ben W. Tripp,Ayaz M. Kassamali,Wendy L. Alexander,Marilyn I. Andersen
#t2005
#cBioinformatics
#index766177
#% 
#!
  
#*TICO: a tool for improving predictions of prokaryotic translation initiation sites.
#@Maike Tech,Nico Pfeifer,Burkhard Morgenstern,Peter Meinicke
#t2005
#cBioinformatics
#index766178
#% 
#!
  
#*Fast assignment of protein structures to sequences using the Intermediate Sequence Library PDB-ISL.
#@Sarah A. Teichmann,Cyrus Chothia,George M. Church,Jong Park
#t2000
#cBioinformatics
#index766179
#% 
#!
  
#*Extraction of protein interaction information from unstructured text using a context-free grammar.
#@Joshua M. Temkin,Mark R. Gilder
#t2003
#cBioinformatics
#index766180
#% 
#!
  
#*Domain organization within repeated DNA sequences: application to the study of a family of transposable elements.
#@Sébastien Tempel,Mathieu Giraud,Dominique Lavenier,Israel-César Lerman,Anne-Sophie Valin,Ivan Couée,Abdelhak El Amrani,Jacques Nicolas
#t2006
#cBioinformatics
#index766181
#% 
#!
  
#*A geometric invariant-based framework for the analysis of protein conformational space.
#@Ashish V. Tendulkar,Milind A. Sohoni,Babatunde Ogunnaike,Pramod P. Wangikar
#t2005
#cBioinformatics
#index766182
#% 
#!
  
#*GLAD: a system for developing and deploying large-scale bioinformatics grid.
#@Yong Meng Teo,Xianbing Wang,Yew Kwong Ng
#t2005
#cBioinformatics
#index766183
#% 
#!
  
#*Predicting rules on organization of cis-regulatory elements, taking the order of elements into account.
#@Goro Terai,Toshihisa Takagi
#t2004
#cBioinformatics
#index766184
#% 
#!
  
#*A variational Bayesian mixture modelling framework for cluster analysis of gene-expression data.
#@Andrew E. Teschendorff,Yanzhong Wang,Nuno L. Barbosa-Morais,James D. Brenton,Carlos H. Caldas
#t2005
#cBioinformatics
#index766185
#% 
#!
  
#*GRIMM: genome rearrangements web server.
#@Glenn Tesler
#t2002
#cBioinformatics
#index766186
#% 
#!
  
#*Data mining techniques to study the disulfide-bonding state in proteins: signal peptide is a strong descriptor.
#@Dominique Tessier,Benjamin Bardiaux,Colette Larré,Yves Popineau
#t2004
#cBioinformatics
#index766187
#% 
#!
  
#*MIPS bacterial genomes functional annotation benchmark dataset.
#@Igor V. Tetko,Barbara Brauner,Irmtraud Dunger-Kaltenbach,Goar Frishman,Corinna Montrone,Gisela Fobo,Andreas Ruepp,Alexey V. Antonov,Dimitrij Surmeli,Hans-Werner Mewes
#t2005
#cBioinformatics
#index766188
#% 
#!
  
#*Identifying target sites for cooperatively binding factors.
#@Debraj Guha Thakurta,Gary D. Stormo
#t2001
#cBioinformatics
#index766189
#% 
#!
  
#*Automatic design of gene-specific sequence tags for genome-wide functional studies.
#@Vincent Thareau,Patrice Déhais,Carine Serizet,Pierre Hilson,Pierre Rouzé,Sébastien Aubourg
#t2003
#cBioinformatics
#index766191
#% 
#!
  
#*Searching RNA motifs and their intermolecular contacts with constraint networks.
#@P. Thébault,Simon de Givry,Thomas Schiex,Christine Gaspin
#t2006
#cBioinformatics
#index766192
#% 
#!
  
#*MIAH: automatic alignment of eukaryotic SSU rRNAs.
#@P. Thebault,P. Monestie,A. McGrath,Desmond G. Higgins
#t1999
#cBioinformatics
#index766193
#% 
#!
  
#*THESEUS: maximum likelihood superpositioning and analysis of macromolecular structures.
#@Douglas L. Theobald,Deborah S. Wuttke
#t2006
#cBioinformatics
#index766194
#% 
#!
  
#*Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12.
#@Denis Thieffry,Heladia Salgado,Araceli M. Huerta,Julio Collado-Vides
#t1998
#cBioinformatics
#index766195
#% 
#!
  
#*HaploPainter: a tool for drawing pedigrees with complex haplotypes.
#@Holger Thiele,Peter J. Nürnberg
#t2005
#cBioinformatics
#index766196
#% 
#!
  
#*A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling.
#@Gert Thijs,Magali Lescot,Kathleen Marchal,Stephane Rombauts,Bart De Moor,Pierre Rouzé,Yves Moreau
#t2001
#cBioinformatics
#index766197
#% 
#!
  
#*INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling.
#@Gert Thijs,Yves Moreau,Frank De Smet,Janick Mathys,Magali Lescot,Stephane Rombauts,Pierre Rouzé,Bart De Moor,Kathleen Marchal
#t2002
#cBioinformatics
#index766198
#% 
#!
  
#*LDDist: a Perl module for calculating LogDet pair-wise distances for protein and nucleotide sequences.
#@Mikael Thollesson
#t2004
#cBioinformatics
#index766201
#% 
#!
  
#*GCHap: fast MLEs for haplotype frequencies by gene counting.
#@Alun Thomas
#t2003
#cBioinformatics
#index766202
#% 
#!
  
#*GMCheck: Bayesian error checking for pedigreegenotypes and phenotypes.
#@Alun Thomas
#t2005
#cBioinformatics
#index766203
#% 
#!
  
#*Completing the E. coli proteome: a database of gene products characterised since the completion of the genome sequence.
#@G. H. Thomas
#t1999
#cBioinformatics
#index766204
#% 
#!
  
#*Maximum likelihood estimates of allele frequencies and error rates from samples of related individuals by gene counting.
#@Alun Thomas,Nicola J. Camp
#t2006
#cBioinformatics
#index766205
#% 
#!
  
#*A model-based optimization framework for the inference on gene regulatory networks from DNA array data.
#@Reuben Thomas,Sanjay Mehrotra,Eleftherios T. Papoutsakis,Vassily Hatzimanikatis
#t2004
#cBioinformatics
#index766206
#% 
#!
  
#*Density guided importance sampling: application to a reduced model of protein folding.
#@Geraint Thomas,Richard B. Sessions,Martin J. Parker
#t2005
#cBioinformatics
#index766207
#% 
#!
  
#*BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.
#@Julie Dawn Thompson,Frédéric Plewniak,Olivier Poch
#t1999
#cBioinformatics
#index766210
#% 
#!
  
#*RASCAL: Rapid Scanning and Correction of Multiple Sequence Alignments.
#@Julie Dawn Thompson,Jean-Claude Thierry,Olivier Poch
#t2003
#cBioinformatics
#index766211
#% 
#!
  
#*Characterizing proteolytic cleavage site activity using bio-basis function neural networks.
#@Rebecca Thomson,T. Charles Hodgman,Zheng Rong Yang,Austin K. Doyle
#t2003
#cBioinformatics
#index766212
#% 
#!
  
#*RadCon: phylogenetic tree comparison and consensus.
#@Joseph L. Thorley,Roderic D. M. Page
#t2000
#cBioinformatics
#index766213
#% 
#!
  
#*ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions.
#@Kurt S. Thorn,Andrew A. Bogan
#t2001
#cBioinformatics
#index766214
#% 
#!
  
#*libsequence: a C++ class library for evolutionary genetic analysis.
#@Kevin Thornton
#t2003
#cBioinformatics
#index766215
#% 
#!
  
#*Sample classification from protein mass spectrometry, by 'peak probability contrasts'.
#@Robert Tibshirani,Trevor Hastie,Balasubramanian Narasimhan,Scott Soltys,Gongyi Shi,Albert Koong,Quynh-Thu Le
#t2004
#cBioinformatics
#index766216
#% 
#!
  
#*Quantifying the relevance of different mediators in the human immune cell network.
#@Paolo Tieri,Silvana Valensin,Vito Latora,Gastone C. Castellani,Massimo Marchiori,Daniel Remondini,Claudio Franceschi
#t2005
#cBioinformatics
#index766217
#% 
#!
  
#*Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments.
#@Elisabeth R. M. Tillier,Thomas W. H. Lui
#t2003
#cBioinformatics
#index766218
#% 
#!
  
#*History of the enzyme nomenclature system.
#@Keith F. Tipton,Sinéad Boyce
#t2000
#cBioinformatics
#index766219
#% 
#!
  
#*An XML message broker framework for exchange and integration of microarray data.
#@Donny Tjandra,Stephen T. C. Wong,Weimin Shen,Brian Pulliam,Elaine Yu,Laura Esserman
#t2003
#cBioinformatics
#index766222
#% 
#!
  
#*MACAT - microarray chromosome analysis tool.
#@Joern Toedling,Sebastian Schmeier,Matthias Heinig,Benjamin Georgi,Stefan Roepcke
#t2005
#cBioinformatics
#index766223
#% 
#!
  
#*GRAST: a new way of genome reduction analysis using comparative genomics.
#@Christina Toft,Mario A. Fares
#t2006
#cBioinformatics
#index766224
#% 
#!
  
#*TMCompare: transmembrane region sequence and structure.
#@Roberto C. Togawa,John F. Antoniw,Jonathan G. L. Mullins
#t2001
#cBioinformatics
#index766225
#% 
#!
  
#*Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling.
#@Hiroyuki Toh,Katsuhisa Horimoto
#t2002
#cBioinformatics
#index766226
#% 
#!
  
#*Statistical Evaluation of the Predictive Toxicology Challenge 2000-2001.
#@Hannu Toivonen,Ashwin Srinivasan,Ross D. King,Stefan Kramer,Christoph Helma
#t2003
#cBioinformatics
#index766227
#% 
#!
  
#*Analysis of expression profile using fuzzy adaptive resonance theory.
#@Shuta Tomida,Taizo Hanai,Hiroyuki Honda,Takeshi Kobayashi
#t2002
#cBioinformatics
#index766229
#% 
#!
  
#*FORTE: a profile-profile comparison tool for protein fold recognition.
#@Kentaro Tomii,Yutaka Akiyama
#t2004
#cBioinformatics
#index766230
#% 
#!
  
#*Towards Computer Aided Design (CAD) of Useful Microorganisms.
#@Masaru Tomita
#t2001
#cBioinformatics
#index766231
#% 
#!
  
#*E-CELL: software environment for whole-cell simulation.
#@Masaru Tomita,Kenta Hashimoto,Koichi Takahashi,Thomas Simon Shimizu,Yuri Matsuzaki,Fumihiko Miyoshi,K. Saito,S. Tanida,Katsuyuki Yugi,J. C. Venter,C. A. Hutchison III
#t1999
#cBioinformatics
#index766232
#% 
#!
  
#*Prediction of HLA-DQ3.2ß Ligands: evidence of multiple registers in class II binding peptides.
#@Joo Chuan Tong,Guanglan Zhang,Tin Wee Tan,J. Thomas August,Vladimir Brusic,Shoba Ranganathan
#t2006
#cBioinformatics
#index766233
#% 
#!
  
#*TRAIT (TRAnscript Integrated Table): a knowledgebase of human skeletal muscle transcripts.
#@Stefano Toppo,Nicola Cannata,Paolo Fontana,Chiara Romualdi,Paolo Laveder,Emanuela Bertocco,Gerolamo Lanfranchi,Giorgio Valle
#t2003
#cBioinformatics
#index766234
#% 
#!
  
#*Editorial.
#@Andrew E. Torda,Thomas Lengauer
#t2006
#cBioinformatics
#index766235
#% 
#!
  
#*The art of pedigree drawing: algorithmic aspects.
#@Frédéric Tores,Emmanuel Barillot
#t2001
#cBioinformatics
#index766237
#% 
#!
  
#*Susceptibility of non-linear systems as an approach to metabolic responses.
#@Antonio S. Torralba
#t2003
#cBioinformatics
#index766238
#% 
#!
  
#*Protein structure topological comparison, discovery and matching service.
#@Gilleain M. Torrance,David R. Gilbert,Ioannis Michalopoulos,David R. Westhead
#t2005
#cBioinformatics
#index766239
#% 
#!
  
#*A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings.
#@Aurora Torrente,Misha Kapushesky,Alvis Brazma
#t2005
#cBioinformatics
#index766240
#% 
#!
  
#*The fuzzy polynucleotide space: basic properties.
#@Angela Torres,Juan J. Nieto
#t2003
#cBioinformatics
#index766241
#% 
#!
  
#*KnowledgeEditor: a new tool for interactive modeling and analyzing biological pathways based on microarray data.
#@Tetsuro Toyoda,Akihiko Konagaya
#t2003
#cBioinformatics
#index766243
#% 
#!
  
#*GSCope: a clipped fisheye viewer effective for highly complicated biomolecular network graphs.
#@Tetsuro Toyoda,Yoshiki Mochizuki,Akihiko Konagaya
#t2003
#cBioinformatics
#index766244
#% 
#!
  
#*Omic space: coordinate-based integration and analysis of genomic phenomic interactions.
#@Tetsuro Toyoda,Akiyoshi Wada
#t2004
#cBioinformatics
#index766245
#% 
#!
  
#*Computational space reduction and parallelization of a new clustering approach for large groups of sequences.
#@Oswaldo Trelles,Miguel A. Andrade,Alfonso Valencia,Emilio L. Zapata,José María Carazo
#t1998
#cBioinformatics
#index766248
#% 
#!
  
#*New phylogenetic venues opened by a novel implementation of the DNAml algorithm.
#@Oswaldo Trelles,C. Ceron,Huaichun Wang,Joaquín Dopazo,José María Carazo
#t1998
#cBioinformatics
#index766249
#% 
#!
  
#*GWAsimulator: a rapid whole-genome simulation program.
#@Chun Li,Mingyao Li
#t2008
#cBioinformatics
#index766250
#% 
#!
  
#*SQUARE-determining reliable regions in sequence alignments.
#@Michael L. Tress,Osvaldo Graña,Alfonso Valencia
#t2004
#cBioinformatics
#index766251
#% 
#!
  
#*GALGO: an R package for multivariate variable selection using genetic algorithms.
#@Victor Trevino,Francesco Falciani
#t2006
#cBioinformatics
#index766252
#% 
#!
  
#*Earliest pages of bioinformatics.
#@Edward N. Trifonov
#t2000
#cBioinformatics
#index766253
#% 
#!
  
#*Phylogenetic trees: visualizing, customizing and detecting incongruence.
#@Geert Trooskens,David De Beule,Frederik Decouttere,Wim Van Criekinge
#t2005
#cBioinformatics
#index766255
#% 
#!
  
#*Java editor for biological pathways.
#@Elmar Trost,Hubert Hackl,Michael Maurer,Zlatko Trajanoski
#t2003
#cBioinformatics
#index766256
#% 
#!
  
#*Sequence complexity profiles of prokaryotic genomic sequences: A fast algorithm for calculating linguistic complexity.
#@Olga G. Troyanskaya,Ora Arbell,Yair Koren,Gad M. Landau,Alexander Bolshoy
#t2002
#cBioinformatics
#index766257
#% 
#!
  
#*Missing value estimation methods for DNA microarrays.
#@Olga G. Troyanskaya,Michael Cantor,Gavin Sherlock,Patrick O. Brown,Trevor Hastie,Robert Tibshirani,David Botstein,Russ B. Altman
#t2001
#cBioinformatics
#index766258
#% 
#!
  
#*Nonparametric methods for identifying differentially expressed genes in microarray data.
#@Olga G. Troyanskaya,Mitchell E. Garber,Patrick O. Brown,David Botstein,Russ B. Altman
#t2002
#cBioinformatics
#index766259
#% 
#!
  
#*Sorting points into neighborhoods (SPIN): data analysis and visualization by ordering distance matrices.
#@Dan Tsafrir,Ilan Tsafrir,Liat Ein-Dor,Or Zuk,Daniel A. Notterman,Eytan Domany
#t2005
#cBioinformatics
#index766261
#% 
#!
  
#*Improving disulfide connectivity prediction with sequential distance between oxidized cysteines.
#@Chi-Hung Tsai,Bo-Juen Chen,Chen-hsiung Chan,Hsuan-Liang Liu,Cheng-Yan Kao
#t2005
#cBioinformatics
#index766262
#% 
#!
  
#*Calculations of protein volumes: sensitivity analysis and parameter database.
#@Jerry Tsai,Mark Gerstein
#t2002
#cBioinformatics
#index766263
#% 
#!
  
#*Method for identifying transcription factor binding sites in yeast.
#@Huai-Kuang Tsai,Grace Tzu-Wei Huang,Meng-Yuan Chou,Henry Horng-Shing Lu,Wen-Hsiung Li
#t2006
#cBioinformatics
#index766264
#% 
#!
  
#*MuSiC: a tool for multiple sequence alignment with constraints.
#@Yin-Te Tsai,Yen Pin Huang,Ching Ta Yu,Chin Lung Lu
#t2004
#cBioinformatics
#index766265
#% 
#!
  
#*Determining the minimum number of types necessary to represent the sizes of protein atoms.
#@Jerry Tsai,Neil Voss,Mark Gerstein
#t2001
#cBioinformatics
#index766266
#% 
#!
  
#*Evolutionary optimization with data collocation for reverse engineering of biological networks.
#@Kuan-Yao Tsai,Feng-Sheng Wang
#t2005
#cBioinformatics
#index766267
#% 
#!
  
#*Sample size for gene expression microarray experiments.
#@Chen-An Tsai,Sue-Jane Wang,Dung-Tsa Chen,James J. Chen
#t2005
#cBioinformatics
#index766268
#% 
#!
  
#*Adjustments and measures of differential expression for microarray data.
#@A. Tsodikov,A. Szabo,D. Jones
#t2002
#cBioinformatics
#index766269
#% 
#!
  
#*PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces.
#@Yuko Tsuchiya,Kengo Kinoshita,Haruki Nakamura
#t2005
#cBioinformatics
#index766271
#% 
#!
  
#*Estimating transcription factor bindability on DNA.
#@Tatsuhiko Tsunoda,Toshihisa Takagi
#t1999
#cBioinformatics
#index766273
#% 
#!
  
#*MedBlast: searching articles related to a biological sequence.
#@Qiang Tu,Haixu Tang,Dafu Ding
#t2004
#cBioinformatics
#index766274
#% 
#!
  
#*CS-PSeq-Gen: Simulating the evolution of protein sequence under constraints.
#@Pierre Tufféry
#t2002
#cBioinformatics
#index766277
#% 
#!
  
#*Improving missing value estimation in microarray data with gene ontology.
#@Johannes Tuikkala,Laura Elo,Olli Nevalainen,Tero Aittokallio
#t2006
#cBioinformatics
#index766279
#% 
#!
  
#*Transmembrane proteins in the Protein Data Bank: identification and classification.
#@Gábor E. Tusnády,Zsuzsanna Dosztányi,István Simon
#t2004
#cBioinformatics
#index766281
#% 
#!
  
#*TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.
#@Gábor E. Tusnády,Zsuzsanna Dosztányi,István Simon
#t2005
#cBioinformatics
#index766282
#% 
#!
  
#*The HMMTOP transmembrane topology prediction server.
#@Gábor E. Tusnády,István Simon
#t2001
#cBioinformatics
#index766283
#% 
#!
  
#*A simple algorithm for detecting circular permutations in proteins.
#@S. Uliel,A. Fliess,Amihood Amir,Ron Unger
#t1999
#cBioinformatics
#index766284
#% 
#!
  
#*Four-helix bundle: a ubiquitous sensory module in prokaryotic signal transduction.
#@Luke E. Ulrich,Igor B. Zhulin
#t2005
#cBioinformatics
#index766285
#% 
#!
  
#*SNP discovery using advanced algorithms and neural networks.
#@Per Unneberg,Michael Strömberg,Fredrik Sterky
#t2005
#cBioinformatics
#index766287
#% 
#!
  
#*Oligonucleotide arrays: information from replication and spatial structure.
#@Graham J. G. Upton,Julie C. Lloyd
#t2005
#cBioinformatics
#index766288
#% 
#!
  
#*An improved algorithm for stoichiometric network analysis: theory and applications.
#@Robert Urbanczik,C. Wagner
#t2005
#cBioinformatics
#index766289
#% 
#!
  
#*Functional stoichiometric analysis of metabolic networks.
#@Robert Urbanczik,C. Wagner
#t2005
#cBioinformatics
#index766290
#% 
#!
  
#*WiGID: wireless genome information database
#@Björn M. Ursing
#t2003
#cBioinformatics
#index766291
#% 
#!
  
#*Optimal spliced alignment of homologous cDNA to a genomic DNA template.
#@Jonathan Usuka,Wei Zhu,Volker Brendel
#t2000
#cBioinformatics
#index766293
#% 
#!
  
#*Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments.
#@Vladimir Vacic,Lilia M. Iakoucheva,Predrag Radivojac
#t2006
#cBioinformatics
#index766294
#% 
#!
  
#*An architecture for biological information extraction and representation.
#@Aditya Vailaya,Peter Bluvas,Robert Kincaid,Allan Kuchinsky,Michael L. Creech,Annette Adler
#t2005
#cBioinformatics
#index766296
#% 
#!
  
#*PATH: a task for the inference of phylogenies.
#@Coral del Val,Peter Ernst,Rüdiger Bräuning,Karl-Heinz Glatting,Sándor Suhai
#t2002
#cBioinformatics
#index766297
#% 
#!
  
#*Rapid classification of a protein fold family using a statistical analysis of dipolar couplings.
#@Homayoun Valafar,James H. Prestegard
#t2003
#cBioinformatics
#index766298
#% 
#!
  
#*Bioinformatics: Biology by other means.
#@Alfonso Valencia
#t2002
#cBioinformatics
#index766299
#% 
#!
  
#*Meta, Metan and Cyber Servers.
#@Alfonso Valencia
#t2003
#cBioinformatics
#index766300
#% 
#!
  
#*Increasing the Impact of .
#@Alfonso Valencia,Alex Bateman
#t2005
#cBioinformatics
#index766301
#% 
#!
  
#*Software patents in Bioinformatics.
#@Alfonso Valencia,Alex Bateman
#t2006
#cBioinformatics
#index766302
#% 
#!
  
#*An automated genotyping system for analysis of HIV-1 and other microbial sequences.
#@Tulio de Oliveira,Koen Deforche,Sharon Cassol,Mika Salminen,Dimitris Paraskevis,Chris Seebregts,Joe Snoeck,Estrelita J. Janse van Rensburg,Annemarie M. J. Wensing,David A. van de Vijver,Charles A. Boucher,Ricardo Camacho,Anne-Mieke Vandamme
#t2005
#cBioinformatics
#index766303
#% 
#!
  
#*Clusterv: a tool for assessing the reliability of clusters discovered in DNA microarray data.
#@Giorgio Valentini
#t2006
#cBioinformatics
#index766304
#% 
#!
  
#*Conservation analysis of large biochemical networks.
#@Ravishankar Rao Vallabhajosyula,Vijay Chickarmane,Herbert M. Sauro
#t2006
#cBioinformatics
#index766305
#% 
#!
  
#*Refinement of optical map assemblies.
#@Anton Valouev,Yu Zhang,David C. Schwartz,Michael S. Waterman
#t2006
#cBioinformatics
#index766306
#% 
#!
  
#*BDT: an easy-to-use front-end application for automation of massive docking tasks and complex docking strategies with AutoDock.
#@Montserrat Vaqué,Anna Arola,Carles Aliagas,Gerard Pujadas
#t2006
#cBioinformatics
#index766307
#% 
#!
  
#*DNMAD: web-based diagnosis and normalization for microarray data.
#@Juan M. Vaquerizas,Joaquín Dopazo,Ramón Díaz-Uriarte
#t2004
#cBioinformatics
#index766308
#% 
#!
  
#*Three-dimensional computation of atom depth in complex molecular structures.
#@Daniele Varrazzo,Andrea Bernini,Ottavia Spiga,Arianna Ciutti,Stefano Chiellini,Vincenzo Venditti,Luisa Bracci,Neri Niccolai
#t2005
#cBioinformatics
#index766310
#% 
#!
  
#*Transformation distances: a family of dissimilarity measures based on movements of segments.
#@Jean-Stéphane Varré,Jean-Paul Delahaye,Eric Rivals
#t1999
#cBioinformatics
#index766311
#% 
#!
  
#*NQ-Flipper: validation and correction of asparagine/glutamine amide rotamers in protein crystal structures.
#@Christian X. Weichenberger,Manfred J. Sippl
#t2006
#cBioinformatics
#index766312
#% 
#!
  
#*HykGene: a hybrid approach for selecting marker genes for phenotype classification using microarray gene expression data.
#@Yuhang Wang,Fillia Makedon,James C. Ford,Justin D. Pearlman
#t2005
#cBioinformatics
#index766313
#% 
#!
  
#*MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies.
#@Ana Tereza R. Vasconcelos,Ana Carolina R. Guimarães,Carlos Henrique M. Castelletti,Célia S. Caruso,Cristina Ribeiro,Fabiano Yokaichiya,Geraldo R. G. Armôa,Gislaine da Silva P. Pereira,Israel T. da Silva,Carlos G. Schrago,Adélia L. V. Fernandes,Aline R. da Silveira,André G. Carneiro,Bruno M. Carvalho,Carlos Juliano M. Viana,Daniel Gramkow,Franklin J. Lima,Luiz G. G. Corrêa,Maurício de Alvarenga Mudado,Pablo Nehab-Hess,Rangel de Souza,Régis L. Corrêa,Claudia A. M. Russo
#t2005
#cBioinformatics
#index766314
#% 
#!
  
#*Short interrupted palindromes on the extragenic DNA of Escherichia coli K-12, Haemophilus influenzae and Neisseria meningitidis.
#@Ana Tereza R. Vasconcelos,Marco A. Grivet Mattoso Maia,Darcy F. de Almeida
#t2000
#cBioinformatics
#index766315
#% 
#!
  
#*The JigCell Model Builder and Run Manager.
#@Marc Vass,Nicholas Allen,Clifford A. Shaffer,Naren Ramakrishnan,Layne T. Watson,John J. Tyson
#t2004
#cBioinformatics
#index766316
#% 
#!
  
#*Adaptive stochastic-deterministic chemical kinetic simulations.
#@Karan Vasudeva,Upinder S. Bhalla
#t2004
#cBioinformatics
#index766317
#% 
#!
  
#*Optimal algorithms for local vertex quartet cleaning.
#@Gianluca Della Vedova,Todd Wareham
#t2002
#cBioinformatics
#index766318
#%185822
#%610044
#%267911
#%1059660
#%558922
#!
  
#*Using credibility intervals instead of hypothesis tests in SAGE analysis.
#@Ricardo Z. N. Vêncio,Helena Brentani,Carlos A. de B. Pereira
#t2003
#cBioinformatics
#index766320
#% 
#!
  
#*MatArray: a Matlab toolbox for microarray data.
#@David Venet
#t2003
#cBioinformatics
#index766321
#% 
#!
  
#*Simulating genetic networks made easy: network construction with simple building blocks.
#@Steven Vercruysse,Martin Kuiper
#t2005
#cBioinformatics
#index766323
#% 
#!
  
#*Imprint of evolutionary conservation and protein structure variation on the binding function of protein tyrosine kinases.
#@Gennady Verkhivker
#t2006
#cBioinformatics
#index766324
#% 
#!
  
#*COREX/BEST server: a web browser-based program that calculates regional stability variations within protein structures.
#@Jason Vertrees,Phillip Barritt,Steve Whitten,Vincent J. Hilser
#t2005
#cBioinformatics
#index766326
#% 
#!
  
#*Seq2Struct: a resource for establishing sequence-structure links.
#@Allegra Via,Andreas Zanzoni,Manuela Helmer-Citterich
#t2005
#cBioinformatics
#index766327
#% 
#!
  
#*VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data.
#@Albert J. Vilella,Angel Blanco-Garcia,Stephan Hutter,Julio Rozas
#t2005
#cBioinformatics
#index766331
#% 
#!
  
#*Fold-specific substitution matrices for protein classification.
#@R. B. Vilim,R. M. Cunningham,B. Lu,P. Kheradpour,Fred J. Stevens
#t2004
#cBioinformatics
#index766332
#% 
#!
  
#*DDBASE2.0: updated domain database with improved identification of structural domains.
#@A. Vinayagam,J. Shi,Ganesan Pugalenthi,B. Meenakshi,Tom L. Blundell,Ramanathan Sowdhamini
#t2003
#cBioinformatics
#index766333
#% 
#!
  
#*A strategy for finding regions of similarity in complete genome sequences.
#@Pierre Vincens,L. Buffat,Cécile André,Jean-Paul Chevrolat,Jean-François Boisvieux,Serge A. Hazout
#t1998
#cBioinformatics
#index766334
#% 
#!
  
#*D-ASSIRC: distributed program for finding sequence similarities in genomes.
#@Pierre Vincens,Anne Badel-Chagnon,Cécile André,Serge A. Hazout
#t2002
#cBioinformatics
#index766335
#% 
#!
  
#*Alignment-free sequence comparison-a review.
#@Susana Vinga,Jonas S. Almeida
#t2003
#cBioinformatics
#index766337
#% 
#!
  
#*Evaluation of iterative alignment algorithms for multiple alignment.
#@Iain M. Wallace,Orla O'Sullivan,Desmond G. Higgins
#t2005
#cBioinformatics
#index766338
#% 
#!
  
#*Comparative evaluation of word composition distances for the recognition of SCOP relationships.
#@Susana Vinga,Rodrigo Gouveia-Oliveira,Jonas S. Almeida
#t2004
#cBioinformatics
#index766339
#% 
#!
  
#*Align-m-a new algorithm for multiple alignment of highly divergent sequences.
#@Ivo Van Walle,Ignace Lasters,Lode Wyns
#t2004
#cBioinformatics
#index766340
#% 
#!
  
#*Bioinformatics needs to adopt statistical thinking - Editorial.
#@Martin Vingron
#t2001
#cBioinformatics
#index766341
#% 
#!
  
#*SABmark- a benchmark for sequence alignment that covers the entire known fold space.
#@Ivo Van Walle,Ignace Lasters,Lode Wyns
#t2005
#cBioinformatics
#index766342
#% 
#!
  
#*MACGT: multi-dimensional automated clustering genotyping tool for analysis of microarray-based mini-sequencing data.
#@David C. Walley,Ben W. Tripp,Young C. Song,Keith R. Walley,Scott J. Tebbutt
#t2006
#cBioinformatics
#index766344
#% 
#!
  
#*Silent DNA: speaking RNA language?
#@Alexander E. Vinogradov
#t2003
#cBioinformatics
#index766345
#% 
#!
  
#*Small, fuzzy and interpretable gene expression based classifiers.
#@Staal A. Vinterbo,Eun-Young Kim,Lucila Ohno-Machado
#t2005
#cBioinformatics
#index766347
#% 
#!
  
#*A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly.
#@Gilad Wainreb,Nurit Haspel,Haim J. Wolfson,Ruth Nussinov
#t2006
#cBioinformatics
#index766348
#% 
#!
  
#*SubSeqer: a graph-based approach for the detection and identification of repetitive elements in low-complexity sequences.
#@David He,John Parkinson
#t2008
#cBioinformatics
#index766349
#% 
#!
  
#*XdomView: protein domain and exon position visualization.
#@Vivek Gopalan,Tin Wee Tan,Shoba Ranganathan
#t2003
#cBioinformatics
#index766352
#% 
#!
  
#*ProMode: a database of normal mode analyses on protein molecules with a full-atom model.
#@Hiroshi Wako,Masaki Kato,Shigeru Endo
#t2004
#cBioinformatics
#index766353
#% 
#!
  
#*Genome-wide co-expression based prediction of differential expressions.
#@Yinglei Lai
#t2008
#cBioinformatics
#index766354
#% 
#!
  
#*SCHIP: statistics for chromosome interphase positioning based on interchange data.
#@Sergi Vives,Bradford Loucas,Mariel Vázquez,David J. Brenner,Rainer K. Sachs,Lynn Hlatky,Michael Cornforth,Javier Arsuaga
#t2005
#cBioinformatics
#index766355
#% 
#!
  
#*Pcons5: combining consensus, structural evaluation and fold recognition scores.
#@Björn Wallner,Arne Elofsson
#t2005
#cBioinformatics
#index766356
#% 
#!
  
#*model.it : building three dimensional DNA models from sequence data.
#@Kristian Vlahovicek,Sándor Pongor
#t2000
#cBioinformatics
#index766357
#% 
#!
  
#*A comprehensive assessment of sequence-based and template-based methods for protein contact prediction.
#@Sitao Wu,Yang Zhang
#t2008
#cBioinformatics
#index766359
#% 
#!
  
#*GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networks.
#@James Vlasblom,Samuel Wu,Shuye Pu,Mark Superina,Gina Liu,Chris Orsi,Shoshana J. Wodak
#t2006
#cBioinformatics
#index766360
#% 
#!
  
#*Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.
#@Anders Wallqvist,Yoshifumi Fukunishi,Lynne Reed Murphy,Addi Fadel,Ronald M. Levy
#t2000
#cBioinformatics
#index766361
#% 
#!
  
#*Linking the growth inhibition response from the National Cancer Institute's anticancer screen to gene expression levels and other molecular target data.
#@Anders Wallqvist,Alfred A. Rabow,Robert H. Shoemaker,Edward A. Sausville,David G. Covell
#t2003
#cBioinformatics
#index766363
#% 
#!
  
#*Non-linear conversion between genetic and physical chromosomal distances.
#@Claudia Voigt,Steffen Möller,Saleh M. Ibrahim,Pablo Serrano-Fernández
#t2004
#cBioinformatics
#index766366
#% 
#!
  
#*Synchronizing a multicellular system by external input: an artificial control strategy.
#@Ruiqi Wang,Luonan Chen,Kazuyuki Aihara
#t2006
#cBioinformatics
#index766367
#% 
#!
  
#*Decoupling dynamical systems for pathway identification from metabolic profiles.
#@Eberhard O. Voit,Jonas S. Almeida
#t2004
#cBioinformatics
#index766368
#% 
#!
  
#*Differences in gene expression between B-cell chronic lymphocytic leukemia and normal B cells: a meta-analysis of three microarray studies.
#@Jing Wang,Kevin R. Coombes,W. Edward Highsmith,M. J. Keating,Lynne V. Abruzzo
#t2004
#cBioinformatics
#index766369
#% 
#!
  
#*Biochemical systems analysis of genome-wide expression data.
#@Eberhard O. Voit,Tomas Radivoyevitch
#t2000
#cBioinformatics
#index766370
#% 
#!
  
#*PARIS: a proteomic analysis and resources indexation system.
#@Juhui Wang,Christophe Caron,Michel-Yves Mistou,Christophe Gitton,Alain Trubuil
#t2004
#cBioinformatics
#index766371
#% 
#!
  
#*PISCES: a protein sequence culling server.
#@Guoli Wang,Roland L. Dunbrack Jr.
#t2003
#cBioinformatics
#index766373
#% 
#!
  
#*SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations.
#@Joseph M. Volpe,Lindsay G. Cowell,Thomas B. Kepler
#t2006
#cBioinformatics
#index766374
#% 
#!
  
#*Self-organizing tree growing network for classifying amino acids.
#@Huaichun Wang,Joaquín Dopazo,José María Carazo
#t1998
#cBioinformatics
#index766375
#% 
#!
  
#*Evaluating the predictability of conformational switching in RNA.
#@Björn Voss,Carsten Meyer,Robert Giegerich
#t2004
#cBioinformatics
#index766376
#% 
#!
  
#*ProbeMatchDB-a web database for finding equivalent probes across microarray platforms and species.
#@Pinglang Wang,Fei Ding,Hsienyuan Chiang,Robert C. Thompson,Stanley J. Watson,Fan Meng
#t2002
#cBioinformatics
#index766377
#% 
#!
  
#*Intramolecular surface contacts contain information about protein-protein interface regions.
#@Sjoerd J. de Vries,Alexandre M. J. J. Bonvin
#t2006
#cBioinformatics
#index766378
#% 
#!
  
#*SVDMAN-singular value decomposition analysis of microarray data.
#@Michael E. Wall,Patricia A. Dyck,Thomas S. Brettin
#t2001
#cBioinformatics
#index766379
#% 
#!
  
#*Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data.
#@Huai Li,Ming Zhan
#t2008
#cBioinformatics
#index766380
#% 
#!
  
#*DisProt: a database of protein disorder.
#@Slobodan Vucetic,Zoran Obradovic,Vladimir Vacic,Predrag Radivojac,Kang Peng,Lilia M. Iakoucheva,Marc S. Cortese,J. David Lawson,Celeste J. Brown,Jason G. Sikes,Crystal D. Newton,A. Keith Dunker
#t2005
#cBioinformatics
#index766381
#% 
#!
  
#*A generalized likelihood ratio test to identify differentially expressed genes from microarray data.
#@Song Wang,Stewart Ethier
#t2004
#cBioinformatics
#index766382
#% 
#!
  
#*Disulfide connectivity prediction using recursive neural networks and evolutionary information.
#@Alessandro Vullo,Paolo Frasconi
#t2004
#cBioinformatics
#index766383
#% 
#!
  
#*Quantitative Quality Control in Microarray Experiments and the Application in Data Filtering, Normalization and False Positive Rate Prediction.
#@Xujing Wang,Martin J. Hessner,Yan Wu,Nirupma Pati,Soumitra Ghosh
#t2003
#cBioinformatics
#index766384
#% 
#!
  
#*Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues.
#@Shinichiro Wachi,Ken Yoneda,Reen Wu
#t2005
#cBioinformatics
#index766385
#% 
#!
  
#*GFPE: gene-finding program evaluation.
#@Jian Wang,Eileen Kraemer
#t2003
#cBioinformatics
#index766386
#% 
#!
  
#*Bioinformatics-the necessity of the quest for 'first principles' in life.
#@Akiyoshi Wada
#t2000
#cBioinformatics
#index766387
#% 
#!
  
#*DigiNorthern, digital expression analysis of query genes based on ESTs.
#@Jianxin Wang,Ping Liang
#t2003
#cBioinformatics
#index766388
#% 
#!
  
#*An evaluation of new criteria for CpG islands in the human genome as gene markers.
#@Yong Wang,Frederick C. C. Leung
#t2004
#cBioinformatics
#index766390
#% 
#!
  
#*DNA structure constraint is probably a fundamental factor inducing CpG deficiency in bacteria.
#@Yong Wang,Frederick C. C. Leung
#t2004
#cBioinformatics
#index766392
#% 
#!
  
#*EST clustering error evaluation and correction.
#@Ji-Ping Z. Wang,Bruce G. Lindsay,James Leebens-Mack,Liying Cui,P. Kerr Wall,Webb C. Miller,Claude W. dePamphilis
#t2004
#cBioinformatics
#index766394
#% 
#!
  
#*How to reconstruct a large genetic network from n gene perturbations in fewer than n2 easy steps.
#@Andreas Wagner
#t2001
#cBioinformatics
#index766395
#% 
#!
  
#*G-PRIMER: greedy algorithm for selecting minimal primer set.
#@Jiren Wang,Kuo-Bin Li,Wing-Kin Sung
#t2004
#cBioinformatics
#index766396
#% 
#!
  
#*Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes.
#@Andreas Wagner
#t1999
#cBioinformatics
#index766397
#% 
#!
  
#*Recognizing translation initiation sites of eukaryotic genes based on the cooperatively scanning model.
#@Yonghong Wang,Jinwei Liu,Tongju Zhao,Qing Ji
#t2003
#cBioinformatics
#index766398
#% 
#!
  
#*Assessing the significance of consistently mis-regulated genes in cancer associated gene expression matrices.
#@Mattias Wahde,Gregory T. Klus,Michael L. Bittner,Yidong Chen,Zoltan Szallasi
#t2002
#cBioinformatics
#index766399
#% 
#!
  
#*Soap-HT-BLAST: high throughput BLAST based on Web services.
#@Jiren Wang,Qing Mu
#t2003
#cBioinformatics
#index766400
#% 
#!
  
#*LongSAGE analysis revealed the presence of a large number of novel antisense genes in the mouse genome.
#@Matthias B. Wahl,Ulrich Heinzmann,Kenji Imai
#t2005
#cBioinformatics
#index766401
#% 
#!
  
#*A Web-based design center for vector-based siRNA and siRNA cassette.
#@Luquan Wang,Forest Y. Mu
#t2004
#cBioinformatics
#index766402
#% 
#!
  
#*LongSAGE analysis significantly improves genome annotation: identifications of novel genes and alternative transcripts in the mouse.
#@Matthias B. Wahl,Ulrich Heinzmann,Kenji Imai
#t2005
#cBioinformatics
#index766403
#% 
#!
  
#*Detecting putative orthologs.
#@D. P. Wall,H. B. Fraser,A. E. Hirsh
#t2003
#cBioinformatics
#index766404
#% 
#!
  
#*Robustified MANOVA with applications in detecting differentially expressed genes from oligonucleotide arrays.
#@Jin Xu,Xinping Cui
#t2008
#cBioinformatics
#index766405
#% 
#!
  
#*MGraph: graphical models for microarray data analysis.
#@Junbai Wang,Ola Myklebost,Eivind Hovig
#t2003
#cBioinformatics
#index766406
#% 
#!
  
#*MArray: analysing single, replicated or reversed microarray experiments.
#@Junbai Wang,Vigdis Nygaard,Birgitte Smith-Sørensen,Eivind Hovig,Ola Myklebost
#t2002
#cBioinformatics
#index766407
#% 
#!
  
#*BLAST++: BLASTing queries in batches.
#@Hao Wang,Beng Chin Ooi,Kian-Lee Tan,Twee-Hee Ong,Lei Zhou
#t2003
#cBioinformatics
#index766408
#% 
#!
  
#*XEMBL: distributing EMBL data in XML format.
#@Lichun Wang,Jean-Jack M. Riethoven,Alan J. Robinson
#t2002
#cBioinformatics
#index766410
#% 
#!
  
#*Selection of Oligonucleotide Probes for Protein Coding Sequences.
#@Xiaowei Wang,Brian Seed
#t2003
#cBioinformatics
#index766411
#% 
#!
  
#*Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
#@Ting Wang,Gary D. Stormo
#t2003
#cBioinformatics
#index766412
#% 
#!
  
#*FSSA: a novel method for identifying functional signatures from structural alignments.
#@Kai Wang,Ram Samudrala
#t2005
#cBioinformatics
#index766413
#% 
#!
  
#*Haplotype reconstruction from SNP fragments by minimum error correction.
#@Rui-Sheng Wang,Ling-Yun Wu,Zhen-Ping Li,Xiang-Sun Zhang
#t2005
#cBioinformatics
#index766414
#% 
#!
  
#*Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.
#@Zuyi Wang,Yue Wang,Jianhua Xuan,Yibin Dong,Marina Bakay,Yuanjian Feng,Robert Clarke,Eric P. Hoffman
#t2006
#cBioinformatics
#index766415
#% 
#!
  
#*SEGID: Identifying Interesting Segments in (Multiple) Sequence Alignments.
#@Lusheng Wang,Ying Xu
#t2003
#cBioinformatics
#index766416
#% 
#!
  
#*Haplotype inference by maximum parsimony.
#@Lusheng Wang,Ying Xu
#t2003
#cBioinformatics
#index766417
#% 
#!
  
#*Parametric alignment of ordered trees.
#@Lusheng Wang,Jianyun Zhao
#t2003
#cBioinformatics
#index766418
#% 
#!
  
#*MicroRNA identification based on sequence and structure alignment.
#@Xiaowo Wang,Jing Zhang,Fei Li,Jin Gu,Tao He,Xuegong Zhang,Yanda Li
#t2005
#cBioinformatics
#index766419
#% 
#!
  
#*Identification of novel families of membrane proteins from the model plant Arabidopsis thaliana.
#@John M. Ward
#t2001
#cBioinformatics
#index766420
#% 
#!
  
#*The DISOPRED server for the prediction of protein disorder.
#@Jonathan J. Ward,Liam J. McGuffin,Kevin Bryson,Bernard F. Buxton,David T. Jones
#t2004
#cBioinformatics
#index766421
#% 
#!
  
#*Secondary structure prediction with support vector machines.
#@Jonathan J. Ward,Liam J. McGuffin,Bernard F. Buxton,David T. Jones
#t2003
#cBioinformatics
#index766422
#% 
#!
  
#*SNPLINK: multipoint linkage analysis of densely distributed SNP data incorporating automated linkage disequilibrium removal.
#@Emily L. Webb,Gabrielle S. Sellick,Richard S. Houlston
#t2005
#cBioinformatics
#index766426
#% 
#!
  
#*Estimation of P-values for global alignments of protein sequences.
#@Caleb Webber,Geoffrey J. Barton
#t2001
#cBioinformatics
#index766427
#% 
#!
  
#*Increased Coverage Obtained by Combination of Methods for Protein Sequence Database Searching.
#@Caleb Webber,Geoffrey J. Barton
#t2003
#cBioinformatics
#index766428
#% 
#!
  
#*SNPbox: a modular software package for large-scale primer design.
#@Stefan Weckx,Peter De Rijk,Christine Van Broeckhoven,Jurgen Del-Favero
#t2005
#cBioinformatics
#index766429
#% 
#!
  
#*GAME: detecting -regulatory elements using a genetic algorithm.
#@Zhi Wei,Shane T. Jensen
#t2006
#cBioinformatics
#index766430
#% 
#!
  
#*TargetDB: a database of peptides targeting proteins to subcellular locations.
#@T. Wei,Michael O'Connell
#t1999
#cBioinformatics
#index766431
#% 
#!
  
#*PRoMT: inferring demographic history from DNA sequences.
#@Stephen Wooding
#t2000
#cBioinformatics
#index766432
#% 
#!
  
#*PopHist: inferring population history from the spectrum of allele frequencies.
#@Stephen Wooding
#t2003
#cBioinformatics
#index766434
#% 
#!
  
#*Sequence-based heuristics for faster annotation of non-coding RNA families.
#@Zasha Weinberg,Walter L. Ruzzo
#t2006
#cBioinformatics
#index766435
#% 
#!
  
#*PseuRECA: genome annotation and gene context analysis for Pseudomonas aeruginosa PAO1.
#@Christian Weinel,Maria D. Ermolaeva,Christos A. Ouzounis
#t2003
#cBioinformatics
#index766437
#% 
#!
  
#*Bayesian analysis of signaling networks governing embryonic stem cell fate decisions.
#@Peter J. Woolf,Wendy Prudhomme,Laurence Daheron,George Q. Daley,Douglas A. Lauffenburger
#t2005
#cBioinformatics
#index766438
#% 
#!
  
#*TreeSAAP: Selection on Amino Acid Properties using phylogenetic trees.
#@Steve Woolley,Justin Johnson,Matthew J. Smith,Keith A. Crandall,David A. McClellan
#t2003
#cBioinformatics
#index766440
#% 
#!
  
#*Rapid motif-based prediction of circular permutations in multi-domain proteins.
#@January Weiner,Geraint Thomas,Erich Bornberg-Bauer
#t2005
#cBioinformatics
#index766441
#% 
#!
  
#*BEAUTY-X: enhanced BLAST searches for DNA queries.
#@K. C. Worley,P. Culpepper,B. A. Wiese,R. F. Smith
#t1998
#cBioinformatics
#index766442
#% 
#!
  
#*An analysis of the Protein Data Bank in search of temporal and global trends.
#@Helge Weissig,Philip E. Bourne
#t1999
#cBioinformatics
#index766447
#% 
#!
  
#*404 not found: the stability and persistence of URLs published in MEDLINE.
#@Jonathan D. Wren
#t2004
#cBioinformatics
#index766448
#% 
#!
  
#*The SBW-CMATLAB interface.
#@Cameron Wellock,Vijay Chickarmane,Herbert M. Sauro
#t2005
#cBioinformatics
#index766449
#% 
#!
  
#*Theory and reality for software patents: good in concept, not so good in practice.
#@Jonathan D. Wren
#t2006
#cBioinformatics
#index766450
#% 
#!
  
#*Repair-FunMap: a functional database of proteins of the DNA repair systems.
#@Liting Wen,Jin-An Feng
#t2004
#cBioinformatics
#index766451
#% 
#!
  
#*Knowledge discovery by automated identification and ranking of implicit relationships.
#@Jonathan D. Wren,Raffi Bekeredjian,Jelena A. Stewart,Ralph V. Shohet,Harold R. Garner
#t2004
#cBioinformatics
#index766452
#% 
#!
  
#*Gap statistics for whole genome shotgun DNA sequencing projects.
#@Michael C. Wendl,Shiaw-Pyng Yang
#t2004
#cBioinformatics
#index766453
#% 
#!
  
#*Shared relationship analysis: ranking set cohesion and commonalities within a literature-derived relationship network.
#@Jonathan D. Wren,Harold R. Garner
#t2004
#cBioinformatics
#index766454
#% 
#!
  
#*Rosetta error model for gene expression analysis.
#@Lee Weng,Hongyue Dai,Yihui Zhan,Yudong D. He,Sergey B. Stepaniants,Douglas E. Bassett
#t2006
#cBioinformatics
#index766455
#% 
#!
  
#*Markov model recognition and classification of DNA/protein sequences within large text databases.
#@Jonathan D. Wren,William H. Hildebrand,Sreedevi Chandrasekaran,Ulrich Melcher
#t2005
#cBioinformatics
#index766456
#% 
#!
  
#*FANMOD: a tool for fast network motif detection.
#@Sebastian Wernicke,Florian Rasche
#t2006
#cBioinformatics
#index766457
#% 
#!
  
#*An Internet linkage and mutation database for the complex phenotype asthma.
#@Matthias Wjst,Thomas Immervoll
#t1998
#cBioinformatics
#index766458
#% 
#!
  
#*Comments on "On correcting the overestimation of the permutation-based false discovery rate estimator".
#@Yang Xie
#t2008
#cBioinformatics
#index766459
#% 
#!
  
#*Analysis of whole-genome microarray replicates using mixed models.
#@Lorenz Wernisch,Sharon L. Kendall,Shamit Soneji,Andreas Wietzorrek,Tanya Parish,Jason Hinds,Philip D. Butcher,Neil G. Stoker
#t2003
#cBioinformatics
#index766460
#% 
#!
  
#*Efficient similarity search in protein structure databases by k-clique hashing.
#@Nils Weskamp,Daniel Kuhn,Eyke Hüllermeier,Gerhard Klebe
#t2004
#cBioinformatics
#index766462
#% 
#!
  
#*GIMSAN: a Gibbs motif finder with significance analysis.
#@Patrick Ng,Uri Keich
#t2008
#cBioinformatics
#index766464
#% 
#!
  
#*Determining a unique defining DNA sequence for yeast species using hashing techniques.
#@Jan-Jaap Wesselink,Beatriz de la Iglesia,Stephen A. James,Jo L. Dicks,Ian N. Roberts,Victor J. Rayward-Smith
#t2002
#cBioinformatics
#index766465
#% 
#!
  
#*TrExML: a maximum-likelihood approach for extensive tree-space exploration.
#@Marty J. Wolf,Simon Easteal,Margaret Kahn,Brendan D. McKay,Lars S. Jermiin
#t2000
#cBioinformatics
#index766466
#% 
#!
  
#*BEST: Bayesian estimation of species trees under the coalescent model.
#@Liang Liu
#t2008
#cBioinformatics
#index766467
#% 
#!
  
#*A protocol for building and evaluating predictors of disease state based on microarray data.
#@Lodewyk F. A. Wessels,Marcel J. T. Reinders,Augustinus A. M. Hart,Cor J. Veenman,Hongyue Dai,Yudong D. He,Laura J. van't Veer
#t2005
#cBioinformatics
#index766468
#% 
#!
  
#*STAR/mmCIF: An ontology for macromolecular structure.
#@John D. Westbrook,Philip E. Bourne
#t2000
#cBioinformatics
#index766470
#% 
#!
  
#*Cancer outlier detection based on likelihood ratio test.
#@Jianhua Hu
#t2008
#cBioinformatics
#index766472
#% 
#!
  
#*PDBML: the representation of archival macromolecular structure data in XML.
#@John D. Westbrook,Nobutoshi Ito,Haruki Nakamura,Kim Henrick,Helen M. Berman
#t2005
#cBioinformatics
#index766473
#% 
#!
  
#*A random variance model for detection of differential gene expression in small microarray experiments.
#@George W. Wright,Richard Simon
#t2003
#cBioinformatics
#index766474
#% 
#!
  
#*Semi-supervised protein classification using cluster kernels.
#@Jason Weston,Christina S. Leslie,Eugene Ie,Dengyong Zhou,André Elisseeff,William Stafford Noble
#t2005
#cBioinformatics
#index766475
#% 
#!
  
#*BLAST PRINTS - alternative perspectives on sequence similarity.
#@W. Wright,Philip Scordis,Terri K. Attwood
#t1999
#cBioinformatics
#index766476
#% 
#!
  
#*Feature selection and transduction for prediction of molecular bioactivity for drug design.
#@Jason Weston,Fernando Pérez-Cruz,Olivier Bousquet,Olivier Chapelle,André Elisseeff,Bernhard Schölkopf
#t2003
#cBioinformatics
#index766477
#% 
#!
  
#*goCluster integrates statistical analysis and functional interpretation of microarray expression data.
#@Gunnar Wrobel,Frédéric Chalmel,Michael Primig
#t2005
#cBioinformatics
#index766478
#% 
#!
  
#*Operon prediction without a training set.
#@Benjamin P. Westover,Jeremy D. Buhler,Justin L. Sonnenburg,Jeffrey I. Gordon
#t2005
#cBioinformatics
#index766479
#% 
#!
  
#*Xdigitise: visualization of hybridization experiments.
#@Wasco Wruck,Huw Griffiths,Matthias Steinfath,Hans Lehrach,Uwe Radelof,John O'Brien
#t2002
#cBioinformatics
#index766480
#% 
#!
  
#*limmaGUI: A graphical user interface for linear modeling of microarray data.
#@James M. Wettenhall,Gordon K. Smyth
#t2004
#cBioinformatics
#index766481
#% 
#!
  
#*affylmGUI: a graphical user interface for linear modeling of single channel microarray data.
#@James M. Wettenhall,Ken M. Simpson,Keith Satterley,Gordon K. Smyth
#t2006
#cBioinformatics
#index766483
#% 
#!
  
#*Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data.
#@Baolin Wu,Tom Abbott,David Fishman,Walter McMurray,Gil Mor,Kathryn Stone,David Ward,Kenneth Williams,Hongyu Zhao
#t2003
#cBioinformatics
#index766484
#% 
#!
  
#*Domain size distributions can predict domain boundaries.
#@S. J. Wheelan,Aron Marchler-Bauer,Stephen H. Bryant
#t2000
#cBioinformatics
#index766485
#% 
#!
  
#*GeneNetwork: an interactive tool for reconstruction of genetic networks using microarray data.
#@Chia-Chin Wu,Hsuan-Cheng Huang,Hsueh-Fen Juan,Shui-Tein Chen
#t2004
#cBioinformatics
#index766486
#% 
#!
  
#*Optimizing reduced-space sequence analysis.
#@Raymond Wheeler,Richard Hughey
#t2000
#cBioinformatics
#index766487
#% 
#!
  
#*Optimal word sizes for dissimilarity measures and estimation of the degree of dissimilarity between DNA sequences.
#@Tiee-Jian Wu,Ying-Hsueh Huang,Lung-An Li
#t2005
#cBioinformatics
#index766488
#% 
#!
  
#*Pandit: a database of protein and associated nucleotide domains with inferred trees.
#@Simon Whelan,Paul I. W. de Bakker,Nick Goldman
#t2003
#cBioinformatics
#index766489
#% 
#!
  
#*Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions in proteins.
#@Anne E. Counterman Burba,Ursula Lehnert,Eric Z. Yu,Mark Gerstein
#t2006
#cBioinformatics
#index766490
#% 
#!
  
#*To permute or not to permute.
#@Yifan Huang,Haiyan Xu,Violeta Calian,Jason C. Hsu
#t2006
#cBioinformatics
#index766491
#% 
#!
  
#*The MGED Ontology: a resource for semantics-based description of microarray experiments.
#@Patricia L. Whetzel,Helen E. Parkinson,Helen C. Causton,Liju Fan,Jennifer Fostel,Gilberto Fragoso,Laurence Game,Mervi Heiskanen,Norman Morrison,Philippe Rocca-Serra,Susanna-Assunta Sansone,Chris J. Taylor,Joseph White,Christian J. Stoeckert Jr.
#t2006
#cBioinformatics
#index766492
#% 
#!
  
#*Identification of functional links between genes using phylogenetic profiles.
#@Jie Wu,Simon Kasif,Charles DeLisi
#t2003
#cBioinformatics
#index766493
#% 
#!
  
#*ProMAT: protein microarray analysis tool.
#@Amanda M. White,Don Simone Daly,Susan M. Varnum,Kevin K. Anderson,Nikki Bollinger,Richard C. Zangar
#t2006
#cBioinformatics
#index766494
#% 
#!
  
#*Primer design using genetic algorithm.
#@Jain-Shing Wu,Chungnan Lee,Chien-Chang Wu,Yow-Ling Shiue
#t2004
#cBioinformatics
#index766495
#% 
#!
  
#*Automated Microarray Image Analysis Toolbox for MATLAB.
#@Amanda M. White,Don Simone Daly,Alan R. Willse,Miroslava Protic,Darrell P. Chandler
#t2005
#cBioinformatics
#index766496
#% 
#!
  
#*Fast probabilistic analysis of sequence function using scoring matrices.
#@Thomas D. Wu,Craig G. Nevill-Manning,Douglas L. Brutlag
#t2000
#cBioinformatics
#index766497
#% 
#!
  
#*GeneFIND web server for protein family identification and information retrieval.
#@Cathy H. Wu,Sailaja Shivakumar,Chittari V. Shivakumar,Sheng-Chih Chen
#t1998
#cBioinformatics
#index766499
#% 
#!
  
#*Identifying periodically expressed transcripts in microarray time series data.
#@Sofia Wichert,Konstantinos Fokianos,Korbinian Strimmer
#t2004
#cBioinformatics
#index766502
#% 
#!
  
#*Constructing ontology-driven protein family databases.
#@Katy Wolstencroft,Robin McEntire,Robert Stevens,Lydia Tabernero,Andy Brass
#t2005
#cBioinformatics
#index766503
#% 
#!
  
#*Statistical Adjustment of Signal Censoring in Gene Expression Experiments.
#@Ernst Wit,John McClure
#t2003
#cBioinformatics
#index766505
#% 
#!
  
#*A metric model of amino acid substitution.
#@Weijia Xu,Daniel P. Miranker
#t2004
#cBioinformatics
#index766506
#% 
#!
  
#*Database model and specification of GermOnline Release 2.0, a cross-species community annotation knowledgebase on germ cell differentiation.
#@C. Wiederkehr,R. Basavaraj,Cyril Sarrauste de Menthière,R. Koch,U. Schlecht,Leandro Hermida,Benjamin Masdoua,R. Ishii,V. Cassen,M. Yamamoto,Christopher Lane,J. Michael Cherry,N. Lamb,Michael Primig
#t2004
#cBioinformatics
#index766507
#% 
#!
  
#*Prediction of RNA secondary structure based on helical regions distribution.
#@Li Wuju,W. JiaJin
#t1998
#cBioinformatics
#index766508
#% 
#!
  
#*CGHMultiArray: exact P-values for multi-array comparative genomic hybridization data.
#@Mark A. van de Wiel,Serge J. Smeets,Ruud H. Brakenhoff,Bauke Ylstra
#t2005
#cBioinformatics
#index766509
#% 
#!
  
#*Training HMM structure with genetic algorithm for biological sequence analysis.
#@Kyoung-Jae Won,Adam Prügel-Bennett,Anders Krogh
#t2004
#cBioinformatics
#index766510
#% 
#!
  
#*ACE-it: a tool for genome-wide integration of gene dosage and RNA expression data.
#@Wessel N. van Wieringen,Jeroen A. M. Belien,Sjoerd J. Vosse,Eskeatnaf M. Achame,Bauke Ylstra
#t2006
#cBioinformatics
#index766511
#% 
#!
  
#*Tclass: tumor classification system based on gene expression profile.
#@Li Wuju,Momiao Xiong
#t2002
#cBioinformatics
#index766512
#% 
#!
  
#*Comparison of and - algorithms for RNA secondary structure prediction.
#@Kay C. Wiese,Andrew Hendriks
#t2006
#cBioinformatics
#index766513
#% 
#!
  
#*PEDSTATS: descriptive statistics, graphics and quality assessment for gene mapping data.
#@Janis E. Wigginton,Gonçalo R. Abecasis
#t2005
#cBioinformatics
#index766515
#% 
#!
  
#*SpecAlign - processing and alignment of mass spectra datasets.
#@Jason W. H. Wong,Gerard Cagney,Hugh M. Cartwright
#t2005
#cBioinformatics
#index766516
#% 
#!
  
#*Taxonomy workbench.
#@Michael Wildpaner,Georg Schneider,Alexander Schleiffer,Frank Eisenhaber
#t2001
#cBioinformatics
#index766517
#% 
#!
  
#*Automatic annotation of organellar genomes with DOGMA.
#@Stacia K. Wyman,Robert K. Jansen,Jeffrey L. Boore
#t2004
#cBioinformatics
#index766518
#% 
#!
  
#*AMADA: analysis of microarray data.
#@Xuhua Xia,Zheng Xie
#t2001
#cBioinformatics
#index766520
#% 
#!
  
#*Storing biological sequence databases in relational form.
#@Guochun Xie,Reynold DeMarco,Richard Blevins,Yuhong Wang
#t2000
#cBioinformatics
#index766522
#% 
#!
  
#*Genquire: genome annotation browser/editor.
#@Mark D. Wilkinson,David Block,William L. Crosby
#t2002
#cBioinformatics
#index766523
#% 
#!
  
#*Phylogenetic Web Profiler.
#@Philip Wong,Grigory Kolesov,Dmitrij Frishman,Walid A. Houry
#t2003
#cBioinformatics
#index766524
#% 
#!
  
#*Identifying genes from up-down properties of microarray expression series.
#@Karen Willbrand,François Radvanyi,Jean-Pierre Nadal,Jean-Paul Thiery,Thomas M. A. Fink
#t2005
#cBioinformatics
#index766525
#% 
#!
  
#*An efficient algorithm for optimizing whole genome alignment with noise.
#@Prudence W. H. Wong,Tak Wah Lam,N. Lu,Hing-Fung Ting,Siu-Ming Yiu
#t2004
#cBioinformatics
#index766526
#% 
#!
  
#*A comparison study: applying segmentation to array CGH data for downstream analyses.
#@Hanni Willenbrock,Jane Fridlyand
#t2005
#cBioinformatics
#index766527
#% 
#!
  
#*ACGT - A Comparative Genomics Tool.
#@Tao Xie,Leroy E. Hood
#t2003
#cBioinformatics
#index766528
#% 
#!
  
#*A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data.
#@Yang Xie,Wei Pan,Arkady B. Khodursky
#t2005
#cBioinformatics
#index766530
#% 
#!
  
#*Residue-rotamer-reduction algorithm for the protein side-chain conformation problem.
#@Wei Xie,Nikolaos V. Sahinidis
#t2006
#cBioinformatics
#index766532
#% 
#!
  
#*GenomeMixer: a complex genetic cross simulator.
#@Alexander G. Williams,Robert W. Williams
#t2004
#cBioinformatics
#index766533
#% 
#!
  
#*Multi-query sequence BLAST output examination with MuSeqBox.
#@Liqun Xing,Volker Brendel
#t2001
#cBioinformatics
#index766534
#% 
#!
  
#*Assessing the application of Ka/Ks ratio test to alternatively spliced exons.
#@Yi Xing,Christopher Lee
#t2005
#cBioinformatics
#index766536
#% 
#!
  
#*New Normalization Methods for CDNA Microarray Data.
#@Dale L. Wilson,Michael J. Buckley,Chris A. Helliwell,I. W. Wilson
#t2003
#cBioinformatics
#index766537
#% 
#!
  
#*A causal inference approach for constructing transcriptional regulatory networks.
#@Biao Xing,Mark J. van der Laan
#t2005
#cBioinformatics
#index766538
#% 
#!
  
#*Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis.
#@Claire L. Wilson,Crispin J. Miller
#t2005
#cBioinformatics
#index766539
#% 
#!
  
#*Non-linear tests for identifying differentially expressed genes or genetic networks.
#@Hao Xiong
#t2006
#cBioinformatics
#index766540
#% 
#!
  
#*Network-based regulatory pathways analysis.
#@Momiao Xiong,Jinying Zhao,Hao Xiong
#t2004
#cBioinformatics
#index766542
#% 
#!
  
#*CEBS object model for systems biology data, SysBio-OM.
#@Sandhya Xirasagar,Scott F. Gustafson,B. Alex Merrick,Kenneth B. Tomer,Stanley Stasiewicz,Denny D. Chan,Kenneth J. Yost III,John R. Yates III,Susan Sumner,Nianqing Xiao,Michael D. Waters
#t2004
#cBioinformatics
#index766544
#% 
#!
  
#*SNPselector: a web tool for selecting SNPs for genetic association studies.
#@Hong Xu,Simon G. Gregory,Elizabeth R. Hauser,Judith E. Stenger,Margaret A. Pericak-Vance,Jeffery M. Vance,Stephan Züchner,Michael A. Hauser
#t2005
#cBioinformatics
#index766546
#% 
#!
  
#*PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis.
#@Dong Xu,Guangshan Li,Liyou Wu,Jizhong Zhou,Ying Xu
#t2002
#cBioinformatics
#index766548
#% 
#!
  
#*Predicting protein secondary structure by cascade-correlation neural networks.
#@Matthew J. Wood,Jonathan D. Hirst
#t2004
#cBioinformatics
#index766550
#% 
#!
  
#*Chemical effects in biological systems (CEBS) object model for toxicology data, SysTox-OM: design and application.
#@Sandhya Xirasagar,Scott F. Gustafson,Cheng-Cheng Huang,Qinyan Pan,Jennifer Fostel,Paul Boyer,B. Alex Merrick,Kenneth B. Tomer,Denny D. Chan,Kenneth J. Yost III,Danielle Choi,Nianqing Xiao,Stanley Stasiewicz,Pierre R. Bushel,Michael D. Waters
#t2006
#cBioinformatics
#index766553
#% 
#!
  
#*Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees.
#@Ying Xu,Victor Olman,Dong Xu
#t2002
#cBioinformatics
#index766555
#% 
#!
  
#*Robust prostate cancer marker genes emerge from direct integration of inter-study microarray data.
#@Lei Xu,Aik Choon Tan,Daniel Q. Naiman,Donald Geman,Raimond L. Winslow
#t2005
#cBioinformatics
#index766556
#% 
#!
  
#*Sequence-structure specificity of a knowledge based energy function at the secondary structure level.
#@Dong Xu,Michael A. Unseren,Ying Xu,Edward C. Uberbacher
#t2000
#cBioinformatics
#index766557
#% 
#!
  
#*Protein domain decomposition using a graph-theoretic approach.
#@Ying Xu,Dong Xu,Harold N. Gabow
#t2000
#cBioinformatics
#index766558
#% 
#!
  
#*GeneInfoMiner - a web server for exploring biomedical literature using batch sequence ID.
#@Weijian Xuan,Stanley J. Watson,Fan Meng
#t2005
#cBioinformatics
#index766559
#% 
#!
  
#*Enrichment of transcriptional regulatory sites in non-coding genomic region.
#@Wen Xue,Jin Wang,Zhirong Shen,Huaiqiu Zhu
#t2004
#cBioinformatics
#index766560
#% 
#!
  
#*GENIUS II: a high-throughput database system for linking ORFs in complete genomes to known protein three-dimensional structures.
#@Yukimitsu Yabuki,Yuri Mukai,Mark B. Swindells,Makiko Suwa
#t2004
#cBioinformatics
#index766561
#% 
#!
  
#*Modeling and predicting transcriptional units of <$O_SSF>Escherichia coli<$C_SSF>genes using hidden Markov models.
#@Tetsushi Yada,Mitsuteru Nakao,Yasushi Totoki,Kenta Nakai
#t1999
#cBioinformatics
#index766562
#% 
#!
  
#*Automatic extraction of motifs represented in the hidden Markov model from a number of DNA sequences.
#@Tetsushi Yada,Yasushi Totoki,Masato Ishikawa,Kiyoshi Asai,Kenta Nakai
#t1998
#cBioinformatics
#index766563
#% 
#!
  
#*Accelerated off-target search algorithm for siRNA.
#@Tomoyuki Yamada,Shinichi Morishita
#t2005
#cBioinformatics
#index766564
#% 
#!
  
#*A new fourier transform approach for protein coding measure based on the format of the Z curve.
#@M. Yan,Z. S. Lin,C. T. Zhang
#t1998
#cBioinformatics
#index766570
#% 
#!
  
#*A graph-theoretic approach for the separation of b and y ions in tandem mass spectra.
#@Bo Yan,Chongle Pan,Victor Olman,Robert L. Hettich,Ying Xu
#t2005
#cBioinformatics
#index766571
#% 
#!
  
#*Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification.
#@Itai Yanai,Hila Benjamin-Rodrig,Michael Shmoish,Vered Chalifa-Caspi,Maxim Shklar,Ron Ophir,Arren Bar-Even,Shirley Horn-Saban,Marilyn Safran,Eytan Domany,Doron Lancet,Orit Shmueli
#t2005
#cBioinformatics
#index766572
#% 
#!
  
#*Efficient sorting of genomic permutations by translocation, inversion and block interchange.
#@Sophia Yancopoulos,Oliver Attie,Richard Friedberg
#t2005
#cBioinformatics
#index766573
#% 
#!
  
#*Structure-dependent sequence alignment for remotely related proteins.
#@An-Suei Yang
#t2002
#cBioinformatics
#index766574
#% 
#!
  
#*Mining gene expression data based on template theory.
#@Zheng Rong Yang
#t2004
#cBioinformatics
#index766575
#% 
#!
  
#*Prediction of caspase cleavage sites using Bayesian bio-basis function neural networks.
#@Zheng Rong Yang
#t2005
#cBioinformatics
#index766576
#% 
#!
  
#*Mining SARS-CoV protease cleavage data using non-orthogonal decision trees: a novel method for decisive template selection.
#@Zheng Rong Yang
#t2005
#cBioinformatics
#index766577
#% 
#!
  
#*Bio-support vector machines for computational proteomics.
#@Zheng Rong Yang,Kuo-Chen Chou
#t2004
#cBioinformatics
#index766579
#% 
#!
  
#*Predicting the linkage sites in glycoproteins using bio-basis function neural network.
#@Zheng Rong Yang,Kuo-Chen Chou
#t2004
#cBioinformatics
#index766580
#% 
#!
  
#*BioEditor - Simplifying Macromolecular Structure Annotation.
#@Peng Yang,Paul A. Craig,David Goodsell,Philip E. Bourne
#t2003
#cBioinformatics
#index766581
#% 
#!
  
#*Mining HIV protease cleavage data using genetic programming with a sum-product function.
#@Zheng Rong Yang,Andrew R. Dalby,Jing Qiu
#t2004
#cBioinformatics
#index766582
#% 
#!
  
#*Integration of metabolic networks and gene expression in virtual reality.
#@Yuting Yang,Levent Engin,Eve Syrkin Wurtele,Carolina Cruz-Neira,Julie A. Dickerson
#t2005
#cBioinformatics
#index766583
#% 
#!
  
#*TSGDB: a database system for tumor suppressor genes.
#@Yanming Yang,Li M. Fu
#t2003
#cBioinformatics
#index766584
#% 
#!
  
#*OxfordGrid: a web interface for pairwise comparative map views.
#@Hongyu Yang,Alan R. Gingle
#t2005
#cBioinformatics
#index766585
#% 
#!
  
#*HideNseek, a post-genome approach to locate transgenes exemplified in .
#@Guojun Yang,Timothy C. Hall
#t2006
#cBioinformatics
#index766586
#% 
#!
  
#*Computation Method to Identify Differential Allelic Gene Expression and Novel Imprinted Genes.
#@Howard H. Yang,Ying Hu,Michael Edmonson,Kenneth H. Buetow,Maxwell P. Lee
#t2003
#cBioinformatics
#index766587
#% 
#!
  
#*GNM: a database of protein functional motions based on Gaussian Network Model.
#@Lee-Wei Yang,Xiong Liu,Christopher Jon Jursa,Mark Holliman,A. J. Rader,Hassan A. Karimi,Ivet Bahar
#t2005
#cBioinformatics
#index766588
#% 
#!
  
#*An enzyme mechanism language for the mathematical modeling of metabolic pathways.
#@Chin-Rang Yang,Bruce E. Shapiro,Eric Mjolsness,G. Wesley Hatfield
#t2005
#cBioinformatics
#index766589
#% 
#!
  
#*RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins.
#@Zheng Rong Yang,Rebecca Thomson,Philip McNeil,Robert Esnouf
#t2005
#cBioinformatics
#index766590
#% 
#!
  
#*Local structure-based sequence profile database for local and global protein structure predictions.
#@An-Suei Yang,Lu-Yong Wang
#t2002
#cBioinformatics
#index766591
#% 
#!
  
#*Local Structure Prediction with Local Structure-based Sequence Profiles.
#@An-Suei Yang,Lu-Yong Wang
#t2003
#cBioinformatics
#index766592
#% 
#!
  
#*IntegratedMap: a Web interface for integrating genetic map data.
#@Hongyu Yang,Hongyu Wang,Alan R. Gingle
#t2005
#cBioinformatics
#index766593
#% 
#!
  
#*Identifying differentially expressed genes from microarray experiments via statistic synthesis.
#@Yee Hwa Yang,Yuanyuan Xiao,Mark R. Segal
#t2005
#cBioinformatics
#index766594
#% 
#!
  
#*CMfinder - a covariance model based RNA motif finding algorithm.
#@Zizhen Yao,Zasha Weinberg,Walter L. Ruzzo
#t2006
#cBioinformatics
#index766595
#% 
#!
  
#*A segment alignment approach to protein comparison.
#@Yuzhen Ye,Lukasz Jaroszewski,Weizhong Li,Adam Godzik
#t2003
#cBioinformatics
#index766596
#% 
#!
  
#*A web-based three-dimensional protein retrieval system by matching visual similarity.
#@Jeng-Sheng Yeh,Ding-Yun Chen,Bing-Yu Chen,Ming Ouhyoung
#t2005
#cBioinformatics
#index766599
#% 
#!
  
#*Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO).
#@Iwei Yeh,Peter D. Karp,Natalya Fridman Noy,Russ B. Altman
#t2003
#cBioinformatics
#index766600
#% 
#!
  
#*A precise and scalable method for querying genes in chromosomal banding regions based on cytogenetic annotations.
#@Kuo-Ho Yen,Chiang Lee,Hsiao-Sheng Liu,Chung-Liang Ho
#t2005
#cBioinformatics
#index766601
#% 
#!
  
#*Physics-based gene identification: proof of concept for Plasmodium falciparum.
#@Edouard Yeramian,Serge Bonnefoy,Gordon Langsley
#t2002
#cBioinformatics
#index766602
#% 
#!
  
#*Bayesian model averaging: development of an improved multi-class, gene selection and classification tool for microarray data.
#@Ka Yee Yeung,Roger Eugene Bumgarner,Adrian E. Raftery
#t2005
#cBioinformatics
#index766603
#% 
#!
  
#*Model-based clustering and data transformations for gene expression data.
#@Ka Yee Yeung,Chris Fraley,A. Murua,Adrian E. Raftery,Walter L. Ruzzo
#t2001
#cBioinformatics
#index766604
#% 
#!
  
#*Validating clustering for gene expression data.
#@Ka Yee Yeung,David R. Haynor,Walter L. Ruzzo
#t2001
#cBioinformatics
#index766605
#% 
#!
  
#*Principal component analysis for clustering gene expression data.
#@Ka Yee Yeung,Walter L. Ruzzo
#t2001
#cBioinformatics
#index766606
#% 
#!
  
#*Dominant spectral component analysis for transcriptional regulations using microarray time-series data.
#@Lap Kun Yeung,Lap Keung Szeto,Alan Wee-Chung Liew,Hong Yan
#t2004
#cBioinformatics
#index766607
#% 
#!
  
#*Background correction for cDNA microarray images using the TV+ model.
#@Wotao Yin,Terrence Chen,Xiang Sean Zhou,Amit Chakraborty
#t2005
#cBioinformatics
#index766608
#% 
#!
  
#*Theoretical and practical advances in genome halving.
#@Peng Yin,Alexander J. Hartemink
#t2005
#cBioinformatics
#index766609
#% 
#!
  
#*Filtering of Ineffective siRNAs and Improved siRNA Design Tool.
#@Siu-Ming Yiu,Prudence W. H. Wong,Tak Wah Lam,Y. C. Mui,H. F. Kung,Marie C. M. Lin,Y. T. Cheung
#t2005
#cBioinformatics
#index766610
#%120781
#!
  
#*Effective similarity measures for expression profiles.
#@Golan Yona,William Dirks,Shafquat Rahman,David M. Lin
#t2006
#cBioinformatics
#index766611
#% 
#!
  
#*PNAD-CSS: a workbench for constructing a protein name abbreviation dictionary.
#@Mikio Yoshida,Ken-ichiro Fukuda,Toshihisa Takagi
#t2000
#cBioinformatics
#index766612
#% 
#!
  
#*ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles.
#@Ryo Yoshida,Tomoyuki Higuchi,Seiya Imoto,Satoru Miyano
#t2006
#cBioinformatics
#index766613
#% 
#!
  
#*Modeling biological systems using Dynetica-a simulator of dynamic networks.
#@Lingchong You,Apirak Hoonlor,John Yin
#t2003
#cBioinformatics
#index766614
#% 
#!
  
#*GelScape: a web-based server for interactively annotating, manipulating, comparing and archiving 1D and 2D gel images.
#@Nelson Young,Zhan Chang,David S. Wishart
#t2004
#cBioinformatics
#index766615
#% 
#!
  
#*OntologyTraverser: an R package for GO analysis.
#@Andrew Young,Nathan Whitehouse,J. Cho,Chad A. Shaw
#t2005
#cBioinformatics
#index766616
#% 
#!
  
#*Combining multi-species genomic data for microRNA identification using a Naïve Bayes classifier.
#@Malik Yousef,Michael Nebozhyn,Hagit Shatkay,Stathis Kanterakis,Louise C. Showe,Michael K. Showe
#t2006
#cBioinformatics
#index766617
#% 
#!
  
#*Hybrid alignment: high-performance with universal statistics.
#@Yi-Kuo Yu,Ralf Bundschuh,Terence Hwa
#t2002
#cBioinformatics
#index766618
#% 
#!
  
#*TO-GO: a Java-based Gene Ontology navigation environment.
#@Ungsik Yu,Yoon Jeong Choi,Jung Kyoon Choi,Sangsoo Kim
#t2005
#cBioinformatics
#index766619
#% 
#!
  
#*PGAAS: a prokaryotic genome assembly assistant system.
#@Zhou Yu,Tao Li,Jindong Zhao,Jingchu Luo
#t2002
#cBioinformatics
#index766620
#% 
#!
  
#*Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data.
#@J. S. Yu,S. Ongarello,R. Fiedler,X. W. Chen,Gianna Toffolo,Claudio Cobelli,Zlatko Trajanoski
#t2005
#cBioinformatics
#index766621
#% 
#!
  
#*Predicting interactions in protein networks by completing defective cliques.
#@Haiyuan Yu,Alberto Paccanaro,Valery Trifonov,Mark Gerstein
#t2006
#cBioinformatics
#index766622
#% 
#!
  
#*Advances to Bayesian network inference for generating causal networks from observational biological data.
#@Jing Yu,V. Anne Smith,Paul P. Wang,Alexander J. Hartemink,Erich D. Jarvis
#t2004
#cBioinformatics
#index766623
#% 
#!
  
#*Study of coordinative gene expression at the biological process level.
#@Tianwei Yu,Wei Sun,Shinsheng Yuan,Ker-Chau Li
#t2005
#cBioinformatics
#index766624
#% 
#!
  
#*Cluster Analyzer for Transcription Sites (CATS): a C++-based program for identifying clustered transcription factor binding sites.
#@Han Yu,Andrew S. Yoo,Iva Greenwald
#t2004
#cBioinformatics
#index766625
#% 
#!
  
#*MULTICLUSTAL: a systematic method for surveying Clustal W alignment parameters.
#@Jeffrey Yuan,Angela Amend,Joseph Borkowski,Reynold DelMarco,Wendy Bailey,Yuan Liu,Guochun Xie,Richard Blevins
#t1999
#cBioinformatics
#index766626
#% 
#!
  
#*Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins.
#@Xin Yuan,Christopher Bystroff
#t2005
#cBioinformatics
#index766627
#% 
#!
  
#*Enhanced homology searching through genome reading frame predetermination.
#@Jeffrey Yuan,Bruce Bush,Alex Elbrecht,Yuan Liu,Theresa Zhang,Wenqing Zhao,Richard Blevins
#t2004
#cBioinformatics
#index766628
#% 
#!
  
#*Towards detection of orthologues in sequence databases.
#@Yan P. Yuan,Oliver Eulenstein,Martin Vingron,Peer Bork
#t1998
#cBioinformatics
#index766629
#% 
#!
  
#*An online literature mining tool for protein phosphorylation.
#@X. Yuan,Zhang-Zhi Hu,H. T. Wu,Manabu Torii,Meenakshi Narayanaswamy,K. E. Ravikumar,K. Vijay-Shanker,Cathy H. Wu
#t2006
#cBioinformatics
#index766630
#% 
#!
  
#*Prediction of Golgi Type II membrane proteins based on their transmembrane domains.
#@Zheng Yuan,Rohan D. Teasdale
#t2002
#cBioinformatics
#index766631
#% 
#!
  
#*A general computational model of mitochondrial metabolism in a whole organelle scale.
#@Katsuyuki Yugi,Masaru Tomita
#t2004
#cBioinformatics
#index766632
#% 
#!
  
#*MFAML: a standard data structure for representing and exchanging metabolic flux models.
#@Hongseok Yun,Dong-Yup Lee,Joonwoo Jeong,Seunghyun Lee,Sang Yup Lee
#t2005
#cBioinformatics
#index766633
#% 
#!
  
#*Primer Design and Marker Clustering for Multiplex SNP-IT Primer Extension Genotyping Assay using Statistical Modeling.
#@Anton Yuryev,Jianping Huang,Kathryn E. Scott,Jennifer Kuebler,Miriam Donaldson,Michael S. Phillips,Mark Pohl,Michael T. Boyce-Jacino
#t2004
#cBioinformatics
#index766634
#% 
#!
  
#*Support vector machines with selective kernel scaling for protein classification and identification of key amino acid positions.
#@Nela Zavaljevski,Fred J. Stevens,Jaques Reifman
#t2002
#cBioinformatics
#index766636
#% 
#!
  
#*InterProScan - an integration platform for the signature-recognition methods in InterPro.
#@Evgeni M. Zdobnov,Rolf Apweiler
#t2001
#cBioinformatics
#index766637
#% 
#!
  
#*The EBI SRS server-recent developments.
#@Evgeni M. Zdobnov,Rodrigo Lopez,Rolf Apweiler,Thure Etzold
#t2002
#cBioinformatics
#index766638
#% 
#!
  
#*The EBI SRS server-new features.
#@Evgeni M. Zdobnov,Rodrigo Lopez,Rolf Apweiler,Thure Etzold
#t2002
#cBioinformatics
#index766639
#% 
#!
  
#*Two-stage designs for experiments with a large number of hypotheses.
#@Sonja Zehetmayer,Peter Bauer,Martin Posch
#t2005
#cBioinformatics
#index766640
#% 
#!
  
#*Alignment of BLAST High-scoring Segment Pairs Based on the Longest Increasing Subsequence Algorithm.
#@Hongyu Zhang
#t2003
#cBioinformatics
#index766641
#% 
#!
  
#*Data pre-processing in liquid chromatography-mass spectrometry-based proteomics.
#@Xiang Zhang,John M. Asara,Jiri Adamec,Mourad Ouzzani,Ahmed K. Elmagarmid
#t2005
#cBioinformatics
#index766642
#% 
#!
  
#*Gene selection using support vector machines with non-convex penalty.
#@Hao Helen Zhang,Jeongyoun Ahn,Xiaodong Lin,Cheolwoo Park
#t2006
#cBioinformatics
#index766643
#% 
#!
  
#*A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations.
#@Chun Zhang,Dione K. Bailey,Tarif Awad,Guoying Liu,Guoliang Xing,Manqiu Cao,Venu Valmeekam,Jacques Retief,Hajime Matsuzaki,Margaret Taub,Mark Seielstad,Giulia C. Kennedy
#t2006
#cBioinformatics
#index766644
#% 
#!
  
#*Post-processing long pairwise alignments.
#@Zheng Zhang,Piotr Berman,Thomas Wiehe,Webb Miller
#t1999
#cBioinformatics
#index766645
#% 
#!
  
#*An extensible application for assembling annotation for genomic data.
#@Jianhua Zhang,Vincent J. Carey,Robert Gentleman
#t2003
#cBioinformatics
#index766646
#% 
#!
  
#*PseudoPipe: an automated pseudogene identification pipeline.
#@Zhaolei Zhang,Nicholas Carriero,Deyou Zheng,John E. Karro,Paul M. Harrison,Mark Gerstein
#t2006
#cBioinformatics
#index766647
#% 
#!
  
#*GEPIS - quantitative gene expression profiling in normal and cancer tissues.
#@Yan Zhang,David A. Eberhard,Gretchen D. Frantz,Patrick Dowd,Thomas D. Wu,Yan Zhou,Colin K. Watanabe,Shiuh-Ming Luoh,Paul Polakis,Kenneth J. Hillan,William I. Wood,Zemin Zhang
#t2004
#cBioinformatics
#index766648
#% 
#!
  
#*A statistical framework for the design of microarray experiments and effective detection of differential gene expression.
#@Shu-Dong Zhang,Timothy W. Gant
#t2004
#cBioinformatics
#index766649
#% 
#!
  
#*An algorithm for identification of bacterial selenocysteine insertion sequence elements and selenoprotein genes.
#@Yan Zhang,Vadim N. Gladyshev
#t2005
#cBioinformatics
#index766650
#% 
#!
  
#*Effect of pooling samples on the efficiency of comparative studies using microarrays.
#@Shu-Dong Zhang,Timothy W. Gant
#t2005
#cBioinformatics
#index766651
#% 
#!
  
#*Improved spliced alignment from an information theoretic approach.
#@Miao Zhang,Warren Gish
#t2006
#cBioinformatics
#index766652
#% 
#!
  
#*Cladogramer: incorporating haplotype frequency into cladogram analysis.
#@Louxin Zhang,Chew-Kiat Heng,Tin Wee Tan
#t2001
#cBioinformatics
#index766653
#% 
#!
  
#*HaploBlockFinder: Haplotype Block Analyses.
#@Kun Zhang,Li Jin
#t2003
#cBioinformatics
#index766654
#% 
#!
  
#*Greedy method for inferring tandem duplication history.
#@Louxin Zhang,Bin Ma,Lusheng Wang,Ying Xu
#t2003
#cBioinformatics
#index766656
#% 
#!
  
#*Classification of protein quaternary structure with support vector machine.
#@Shao-Wu Zhang,Quan Pan,Hongcai Zhang,Yun-Long Zhang,Hai-Yu Wang
#t2003
#cBioinformatics
#index766657
#% 
#!
  
#*HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms.
#@Kui Zhang,Zhaohui S. Qin,Ting Chen,Jun S. Liu,Michael S. Waterman,Fengzhu Sun
#t2005
#cBioinformatics
#index766658
#% 
#!
  
#*A method for predicting disease subtypes in presence of misclassification among training samples using gene expression: application to human breast cancer.
#@Wensheng Zhang,Romdhane Rekaya,Keith Bertrand
#t2006
#cBioinformatics
#index766659
#% 
#!
  
#*-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in .
#@Weixiong Zhang,Jianhua Ruan,Tuan-hua David Ho,Youngsook You,Taotao Yu,Ralph S. Quatrano
#t2005
#cBioinformatics
#index766660
#% 
#!
  
#*HAPLORE: a program for haplotype reconstruction in general pedigrees without recombination.
#@Kui Zhang,Fengzhu Sun,Hongyu Zhao
#t2005
#cBioinformatics
#index766662
#% 
#!
  
#*A profile hidden Markov model for signal peptides generated by HMMER.
#@Zemin Zhang,William I. Wood
#t2003
#cBioinformatics
#index766663
#% 
#!
  
#*Identification of characteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence dataset.
#@Zhengdong Zhang,Richard C. Willson,George E. Fox
#t2002
#cBioinformatics
#index766665
#% 
#!
  
#*Improving conformational searches by geometric screening.
#@Ming Zhang,R. Allen White,Liqun Wang,Ronald N. Goldman,Lydia E. Kavraki,Brendan Hassett
#t2005
#cBioinformatics
#index766666
#% 
#!
  
#*Reconstruction of DNA sequencing by hybridization.
#@Ji-Hong Zhang,Ling-Yun Wu,Xiang-Sun Zhang
#t2003
#cBioinformatics
#index766667
#% 
#!
  
#*Improved method for predicting ?-turn using support vector machine.
#@Qidong Zhang,Sukjoon Yoon,William J. Welsh
#t2005
#cBioinformatics
#index766668
#% 
#!
  
#*Preference of simple sequence repeats in coding and non-coding regions of Arabidopsis thaliana.
#@Lida Zhang,Dejun Yuan,Shunwu Yu,Zhugang Li,Youfang Cao,Zhiqi Miao,Hongmei Qian,Kexuan Tang
#t2004
#cBioinformatics
#index766669
#% 
#!
  
#*Promoter Extraction from GenBank (PEG): automatic extraction of eukaryotic promoter sequences in large sets of genes.
#@Theresa Zhang,Michael Q. Zhang
#t2001
#cBioinformatics
#index766670
#% 
#!
  
#*A systematic method to identify genomic islands and its applications in analyzing the genomes of Corynebacterium glutamicum and Vibrio vulnificus CMCP6 chromosome I.
#@Ren Zhang,Chun-Ting Zhang
#t2004
#cBioinformatics
#index766671
#% 
#!
  
#*SNPNB: analyzing neighboring-nucleotide biases on single nucleotide polymorphisms (SNPs).
#@Fengkai Zhang,Zhongming Zhao
#t2005
#cBioinformatics
#index766672
#% 
#!
  
#*A new criterion to classify globular proteins based on their secondary structure contents.
#@C. T. Zhang,R. Zhang
#t1998
#cBioinformatics
#index766673
#% 
#!
  
#*Gene sequence signatures revealed by mining the UniGene affiliation network.
#@Jiexin Zhang,Li Zhang,Kevin R. Coombes
#t2006
#cBioinformatics
#index766674
#% 
#!
  
#*Conservation analysis of small RNA genes in Escherichia coli.
#@Yong Zhang,Zhihua Zhang,Lunjiang Ling,Baochen Shi,Runsheng Chen
#t2004
#cBioinformatics
#index766675
#% 
#!
  
#*The Z curve database: a graphic representation of genome sequences.
#@Chun-Ting Zhang,Ren Zhang,Hong-Yu Ou
#t2003
#cBioinformatics
#index766676
#% 
#!
  
#*VizStruct: exploratory visualization for gene expression profiling.
#@Li Zhang,Aidong Zhang,Murali Ramanathan
#t2004
#cBioinformatics
#index766677
#% 
#!
  
#*2LD, GENECOUNTING and HAP: computer programs for linkage disequilibrium analysis.
#@Jing Hua Zhao
#t2004
#cBioinformatics
#index766678
#% 
#!
  
#*Pedigree-drawing with R and graphviz.
#@Jing Hua Zhao
#t2006
#cBioinformatics
#index766679
#% 
#!
  
#*A non-stationary model for functional mapping of complex traits.
#@Wei Zhao,Ying Q. Chen,George Casella,James M. Cheverud,Rongling Wu
#t2005
#cBioinformatics
#index766680
#% 
#!
  
#*GENECOUNTING: haplotype analysis with missing genotypes.
#@Jing Hua Zhao,Sebastien Lissarrague,Laurent Essioux,Pak Chung Sham
#t2002
#cBioinformatics
#index766681
#% 
#!
  
#*SNPP: automating large-scale SNP genotype data management.
#@Lan-Juan Zhao,Miao-Xin Li,Yan-Fang Guo,Fu-Hua Xu,Jin-Long Li,Hong-Wen Deng
#t2005
#cBioinformatics
#index766682
#% 
#!
  
#*Cysteine separations profiles on protein sequences infer disulfide connectivity.
#@East Zhao,Hsuan-Liang Liu,Chi-Hung Tsai,Huai-Kuang Tsai,Chen-hsiung Chan,Cheng-Yan Kao
#t2005
#cBioinformatics
#index766683
#% 
#!
  
#*Modified Nonparametric Approaches to Detecting Differentially Expressed Genes in Replicated Microarray Experiments.
#@Yanli Zhao,Wei Pan
#t2003
#cBioinformatics
#index766684
#% 
#!
  
#*Application of support vector machines for T-cell epitopes prediction.
#@Yingdong Zhao,Clemencia Pinilla,Danila Valmori,Roland Martin,Richard Simon
#t2003
#cBioinformatics
#index766685
#% 
#!
  
#*Inferring gene regulatory networks from time series data using the minimum description length principle.
#@Wentao Zhao,Erchin Serpedin,Edward R. Dougherty
#t2006
#cBioinformatics
#index766686
#% 
#!
  
#*Relation between weight matrix and substitution matrix: motif search by similarity.
#@Wei-Mou Zheng
#t2005
#cBioinformatics
#index766687
#% 
#!
  
#*Efficient selection of unique and popular oligos for large EST databases.
#@Jie Zheng,Timothy J. Close,Tao Jiang,Stefano Lonardi
#t2004
#cBioinformatics
#index766688
#%1009270
#%438637
#%558930
#%558715
#%558725
#%118719
#!
  
#*Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs.
#@Xiangqun H. Zheng,Fu Lu,Zhen-Yuan Wang,Fei Zhong,Jeffrey Hoover,Richard J. Mural
#t2005
#cBioinformatics
#index766689
#% 
#!
  
#*Mutagenic probability estimation of chemical compounds by a novel molecular electrophilicity vector and support vector machine.
#@Mingyue Zheng,Zhiguo Liu,Chunxia Xue,Weiliang Zhu,Kaixian Chen,Xiaomin Luo,Hualiang Jiang
#t2006
#cBioinformatics
#index766690
#% 
#!
  
#*STARS: statistics on inter-atomic distances and torsion angles in protein secondary structures.
#@Yu Zheng,Daiwen Yang
#t2005
#cBioinformatics
#index766691
#% 
#!
  
#*TRMP: a database of therapeutically relevant multiple pathways.
#@C. J. Zheng,H. Zhou,B. Xie,L. Y. Han,Chun Wei Yap,Yu Zong Chen
#t2004
#cBioinformatics
#index766692
#% 
#!
  
#*HICLAS: a taxonomic database system for displaying and comparing biological classification and phylogenetic trees.
#@Yang Zhong,Y. Luo,Sakti Pramanik,John H. Beaman
#t1999
#cBioinformatics
#index766693
#% 
#!
  
#*RSIR: regularized sliced inverse regression for motif discovery.
#@Wenxuan Zhong,Peng Zeng,Ping Ma,Jun S. Liu,Michael Yu Zhu
#t2005
#cBioinformatics
#index766694
#% 
#!
  
#*UniBLAST: a system to filter, cluster, and display BLAST results and assign unique gene annotation.
#@Yan Zhou,Guyang Matthew Huang,Liping Wei
#t2002
#cBioinformatics
#index766695
#% 
#!
  
#*AVA: visual analysis of gene expression microarray data.
#@Yihua Zhou,Jingdong Liu
#t2003
#cBioinformatics
#index766696
#% 
#!
  
#*Modeling within-motif dependence for transcription factor binding site predictions.
#@Qing Zhou,Jun S. Liu
#t2004
#cBioinformatics
#index766697
#% 
#!
  
#*LS Bound based gene selection for DNA microarray data.
#@Xin Zhou,K. Z. Mao
#t2005
#cBioinformatics
#index766698
#% 
#!
  
#*An expression index for Affymetrix GeneChips based on the generalized logarithm.
#@Lei Zhou,David M. Rocke
#t2005
#cBioinformatics
#index766699
#% 
#!
  
#*Missing-value estimation using linear and non-linear regression with Bayesian gene selection.
#@Xiaobo Zhou,Xiaodong Wang,Edward R. Dougherty
#t2003
#cBioinformatics
#index766700
#% 
#!
  
#*A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks.
#@Xiaobo Zhou,Xiaodong Wang,Ranadip Pal,Ivan Ivanov,Michael L. Bittner,Edward R. Dougherty
#t2004
#cBioinformatics
#index766701
#% 
#!
  
#*CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS).
#@Fengfeng Zhou,Yu Xue,Xuebiao Yao,Ying Xu
#t2006
#cBioinformatics
#index766702
#% 
#!
  
#*In silico gene function prediction using ontology-based pattern identification.
#@Yingyao Zhou,Jason A. Young,Andrey Santrosyan,Kaisheng Chen,S. Frank Yan,Elizabeth A. Winzeler
#t2005
#cBioinformatics
#index766703
#% 
#!
  
#*SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
#@Hongyi Zhou,Yaoqi Zhou
#t2005
#cBioinformatics
#index766704
#% 
#!
  
#*Computational approaches for identification of conserved/unique binding pockets in the A chain of ricin.
#@Carol L. Ecale Zhou,Adam Zemla,Diana C. Roe,Malin Young,Marisa Lam,Joseph S. Schoeniger,Rod Balhorn
#t2005
#cBioinformatics
#index766705
#% 
#!
  
#*Recognizing names in biomedical texts: a machine learning approach.
#@Guodong Zhou,Jie Zhang,Jian Su,Dan Shen,Chew Lim Tan
#t2004
#cBioinformatics
#index766706
#% 
#!
  
#*Gene structure identification with MyGV using cDNA evidence and protein homologs to improve ab initio predictions.
#@Wei Zhu,Volker Brendel
#t2002
#cBioinformatics
#index766707
#% 
#!
  
#*Computational identification of novel chitinase-like proteins in the Drosophila melanogaster genome.
#@Qingsong Zhu,Youping Deng,Phaneendra Vanka,Susan J. Brown,Subbaratnam Muthukrishnan,Karl J. Kramer
#t2004
#cBioinformatics
#index766708
#% 
#!
  
#*Network constrained clustering for gene microarray data.
#@Dongxiao Zhu,Alfred O. Hero,Hong Cheng,Ritu Khanna,Anand Swaroop
#t2005
#cBioinformatics
#index766709
#% 
#!
  
#*Accuracy improvement for identifying translation initiation sites in microbial genomes.
#@Huaiqiu Zhu,Gang-Qing Hu,Zheng-Qing Ouyang,Jin Wang,Zhen-Su She
#t2004
#cBioinformatics
#index766710
#% 
#!
  
#*A homolog of mammalian antizyme is present in fission yeast Schizosaccharomyces pombe but not detected in budding yeast Saccharomyces cerevisiae.
#@Chang Zhu,Kevin Karplus,Leslie Grate,Philip Coffino
#t2000
#cBioinformatics
#index766711
#% 
#!
  
#*Bayesian adaptive sequence alignment algorithms.
#@Jun Zhu,Jun S. Liu,Charles E. Lawrence
#t1998
#cBioinformatics
#index766712
#% 
#!
  
#*MASIA: recognition of common patterns and properties in multiple aligned protein sequences.
#@H. Zhu,Catherine H. Schein,Werner Braun
#t2000
#cBioinformatics
#index766713
#% 
#!
  
#*Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules.
#@Shanfeng Zhu,Keiko Udaka,John Sidney,Alessandro Sette,Kiyoko F. Aoki-Kinoshita,Hiroshi Mamitsuka
#t2006
#cBioinformatics
#index766714
#% 
#!
  
#*SCPD: a promoter database of the yeast Saccharomyces cerevisiae.
#@J. Zhu,Michael Q. Zhang
#t1999
#cBioinformatics
#index766715
#% 
#!
  
#*Engineering support vector machine kernels that recognize translation initiation sites.
#@Alexander Zien,Gunnar Rätsch,Sebastian Mika,Bernhard Schölkopf,Thomas Lengauer,Klaus-Robert Müller
#t2000
#cBioinformatics
#index766716
#% 
#!
  
#*New scoring schemes for protein fold recognition based on Voronoi contacts.
#@Ralf Zimmer,Marko Wöhler,Ralf Thiele
#t1998
#cBioinformatics
#index766717
#% 
#!
  
#*HEGESMA: genome search meta-analysis and heterogeneity testing.
#@Elias Zintzaras,John P. A. Ioannidis
#t2005
#cBioinformatics
#index766719
#% 
#!
  
#*A simple algorithm to infer gene duplication and speciation events on a gene tree.
#@Christian M. Zmasek,Sean R. Eddy
#t2001
#cBioinformatics
#index766720
#% 
#!
  
#*ATV: display and manipulation of annotated phylogenetic.
#@Christian M. Zmasek,Sean R. Eddy
#t2001
#cBioinformatics
#index766721
#% 
#!
  
#*Database driven test case generation for protein?Cprotein docking.
#@Frank Zöllner,Steffen Neumann,Franz Kummert,Gerhard Sagerer
#t2005
#cBioinformatics
#index766722
#% 
#!
  
#*Association mapping and fine mapping with TreeLD.
#@Sebastian Zöllner,Xiaoquan Wen,Jonathan K. Pritchard
#t2005
#cBioinformatics
#index766723
#% 
#!
  
#*A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data.
#@Min Zou,Suzanne D. Conzen
#t2005
#cBioinformatics
#index766724
#% 
#!
  
#*GenePath: a system for automated construction of genetic networks from mutant data.
#@Blaz Zupan,Janez Demsar,Ivan Bratko,Peter Juvan,John A. Halter,Adam Kuspa,Gad Shaulsky
#t2003
#cBioinformatics
#index766726
#% 
#!
  
#*Genetic algorithm-based optimization of hydrophobicity tables.
#@Moti Zviling,Hadas Leonov,Isaiah T. Arkin
#t2005
#cBioinformatics
#index766727
#% 
#!
  
#*Analysis of differentially-regulated genes within a regulatory network by GPS genome navigation.
#@Igor Zwir,Henry Huang,Eduardo A. Groisman
#t2005
#cBioinformatics
#index766728
#% 
#!
  
#*A multivariate approach for integrating genome-wide expression data and biological knowledge.
#@Sek Won Kong,William T. Pu,Peter J. Park
#t2006
#cBioinformatics
#index766730
#% 
#!
  
#*A Gibbs sampler for the identification of gene expression and network connectivity consistency.
#@Mark P. Brynildsen,Linh M. Tran,James C. Liao
#t2006
#cBioinformatics
#index766731
#% 
#!
  
#*Adding sequence context to a Markov background model improves the identification of regulatory elements.
#@Nak-Kyeong Kim,Kannan Tharakaraman,John L. Spouge
#t2006
#cBioinformatics
#index766732
#% 
#!
  
#*RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis.
#@Fangxin Hong,Rainer Breitling,Connor W. McEntee,Ben S. Wittner,Jennifer L. Nemhauser,Joanne Chory
#t2006
#cBioinformatics
#index766733
#% 
#!
  
#*Analysis of HIV-1 sequences using Bayesian Networks: implications for drug resistance.
#@Koen Deforche,T. Silander,Ricardo Camacho,Z. Grossman,M. A. Soares,Kristel Van Laethem,R. Kantor,Yves Moreau,Anne-Mieke Vandamme
#t2006
#cBioinformatics
#index766734
#% 
#!
  
#*TimeTree: a public knowledge-base of divergence times among organisms.
#@S. Blair Hedges,Joel Dudley,Sudhir Kumar
#t2006
#cBioinformatics
#index766735
#% 
#!
  
#*CAPS: coevolution analysis using protein sequences.
#@Mario A. Fares,David McNally
#t2006
#cBioinformatics
#index766736
#% 
#!
  
#*Robust method for detecting differential gene expression in twin studies.
#@Alexander Begun
#t2006
#cBioinformatics
#index766737
#% 
#!
  
#*ADAM: another database of abbreviations in MEDLINE.
#@Wei Zhou,Vetle I. Torvik,Neil R. Smalheiser
#t2006
#cBioinformatics
#index766738
#% 
#!
  
#*Eigengene-based linear discriminant model for tumor classification using gene expression microarray data.
#@Ronglai Shen,Debashis Ghosh,Arul M. Chinnaiyan,Zhaoling Meng
#t2006
#cBioinformatics
#index766739
#% 
#!
  
#*Remote homology detection based on oligomer distances.
#@Thomas Lingner,Peter Meinicke
#t2006
#cBioinformatics
#index766740
#% 
#!
  
#*Text similarity: an alternative way to search MEDLINE.
#@James Lewis,Stephan Ossowski,Justin M. Hicks,Mounir Errami,Harold R. Garner
#t2006
#cBioinformatics
#index766741
#% 
#!
  
#*COPASI - a COmplex PAthway SImulator.
#@Stefan Hoops,Sven Sahle,Ralph Gauges,Christine Lee,Jürgen Pahle,Natalia Simus,Mudita Singhal,Liang Xu,Pedro Mendes,Ursula Kummer
#t2006
#cBioinformatics
#index766742
#% 
#!
  
#*OSIRIS: a tool for retrieving literature about sequence variants.
#@Julio Bonis,Laura Inés Furlong,Ferran Sanz
#t2006
#cBioinformatics
#index766743
#% 
#!
  
#*- a bioconductor package for detecting similarity in ordered gene lists.
#@Claudio Lottaz,Xinan Yang,Stefanie Scheid,Rainer Spang
#t2006
#cBioinformatics
#index766744
#% 
#!
  
#*GATHER: a systems approach to interpreting genomic signatures.
#@Jeffrey T. Chang,Joseph Nevins
#t2006
#cBioinformatics
#index766745
#% 
#!
  
#*Predicting methylation status of CpG islands in the human brain.
#@Fang Fang,Shicai Fan,Xuegong Zhang,Michael Q. Zhang
#t2006
#cBioinformatics
#index766746
#% 
#!
  
#*MUSA: a parameter free algorithm for the identification of biologically significant motifs.
#@Nuno D. Mendes,Ana C. Casimiro,Pedro M. Santos,Isabel Sá-Correia,Arlindo L. Oliveira,Ana T. Freitas
#t2006
#cBioinformatics
#index766747
#% 
#!
  
#*What should be expected from feature selection in small-sample settings.
#@Chao Sima,Edward R. Dougherty
#t2006
#cBioinformatics
#index766748
#% 
#!
  
#*Building an abbreviation dictionary using a term recognition approach.
#@Naoaki Okazaki,Sophia Ananiadou
#t2006
#cBioinformatics
#index766749
#% 
#!
  
#*Integration of gel-based proteome data with pProRep.
#@Kris Laukens,Rune Matthiesen,Filip Lemière,Eddy Esmans,Harry Van Onckelen,Ole Nørregaard Jensen,Erwin Witters
#t2006
#cBioinformatics
#index766750
#% 
#!
  
#*Variance stabilization and normalization for one-color microarray data using a data-driven multiscale approach.
#@E. S. Motakis,G. P. Nason,P. Fryzlewicz,G. A. Rutter
#t2006
#cBioinformatics
#index766751
#% 
#!
  
#*Bayesian variable selection for the analysis of microarray data with censored outcomes.
#@Naijun Sha,Mahlet G. Tadesse,Marina Vannucci
#t2006
#cBioinformatics
#index766752
#% 
#!
  
#*Joint estimation of calibration and expression for high-density oligonucleotide arrays.
#@Ann L. Oberg,Douglas W. Mahoney,Karla V. Ballman,Terry M. Therneau
#t2006
#cBioinformatics
#index766753
#% 
#!
  
#*An algorithm for modularity analysis of directed and weighted biological networks based on edge-betweenness centrality.
#@Jeongah Yoon,Anselm Blumer,Kyongbum Lee
#t2006
#cBioinformatics
#index766754
#% 
#!
  
#*FoldUnfold: web server for the prediction of disordered regions in protein chain.
#@Oxana V. Galzitskaya,Sergiy O. Garbuzynskiy,Michail Yu. Lobanov
#t2006
#cBioinformatics
#index766755
#% 
#!
  
#*SPEED: a molecular-evolution-based database of mammalian orthologous groups.
#@Eric J. Vallender,Justin E. Paschall,Christine M. Malcom,Bruce T. Lahn,Gerald J. Wyckoff
#t2006
#cBioinformatics
#index766756
#% 
#!
  
#*RBR: library-less repeat detection for ESTs.
#@Ketil Malde,Korbinian Schneeberger,Eivind Coward,Inge Jonassen
#t2006
#cBioinformatics
#index766757
#% 
#!
  
#*Effects of replacing the unreliable cDNA microarray measurements on the disease classification based on gene expression profiles and functional modules.
#@Dong Wang,Yingli Lv,Zheng Guo,Xia Li,Yanhui Li,Jing Zhu,Da Yang,Jianzhen Xu,Chenguang Wang,Shaoqi Rao,Baofeng Yang
#t2006
#cBioinformatics
#index766758
#% 
#!
  
#*Identification of transcription factor cooperativity via stochastic system model.
#@Yu-Hsiang Chang,Yu-Chao Wang,Bor-Sen Chen
#t2006
#cBioinformatics
#index766759
#% 
#!
  
#*Bioinformatics in the human interactome project.
#@Trey Ideker,Alfonso Valencia
#t2006
#cBioinformatics
#index766760
#% 
#!
  
#*Augur - a computational pipeline for whole genome microbial surface protein prediction and classification.
#@A. Billion,Rohit Ghai,Trinad Chakraborty,Torsten Hain
#t2006
#cBioinformatics
#index766761
#% 
#!
  
#*Nemo: an evolutionary and population genetics programming framework.
#@Frédéric Guillaume,Jacques Rougemont
#t2006
#cBioinformatics
#index766762
#% 
#!
  
#*SynView: a GBrowse-compatible approach to visualizing comparative genome data.
#@Haiming Wang,Yanqi Su,Aaron J. Mackey,Eileen Kraemer,Jessica C. Kissinger
#t2006
#cBioinformatics
#index766763
#% 
#!
  
#*Babel's tower revisited: a universal resource for cross-referencing across annotation databases.
#@Sorin Draghici,Sivakumar Sellamuthu,Purvesh Khatri
#t2006
#cBioinformatics
#index766764
#% 
#!
  
#*Detecting functional modules in the yeast protein-protein interaction network.
#@Jingchun Chen,Bo Yuan
#t2006
#cBioinformatics
#index766765
#% 
#!
  
#*DUF283 domain of Dicer proteins has a double-stranded RNA-binding fold.
#@Mensur Dlakic
#t2006
#cBioinformatics
#index766766
#% 
#!
  
#*Markov Chain Monte Carlo Algorithm based metabolic flux distribution analysis on .
#@Visakan Kadirkamanathan,Jing Yang,Stephen A. Billings,Phillip C. Wright
#t2006
#cBioinformatics
#index766767
#% 
#!
  
#*PACK: Profile Analysis using Clustering and Kurtosis to find molecular classifiers in cancer.
#@Andrew E. Teschendorff,Ali Naderi,Nuno L. Barbosa-Morais,Carlos H. Caldas
#t2006
#cBioinformatics
#index766768
#% 
#!
  
#*COPA - cancer outlier profile analysis.
#@James W. MacDonald,Debashis Ghosh
#t2006
#cBioinformatics
#index766769
#% 
#!
  
#*PBAT: a massive parallel implementation of PBAT for genome-wide association studies in R.
#@Thomas Hoffmann,Christoph Lange
#t2006
#cBioinformatics
#index766770
#% 
#!
  
#*Maximum likelihood of phylogenetic networks.
#@Guohua Jin,Luay Nakhleh,Sagi Snir,Tamir Tuller
#t2006
#cBioinformatics
#index766771
#% 
#!
  
#*arrayQCplot: software for checking the quality of microarray data.
#@Eun-Kyung Lee,Sung-Gon Yi,Taesung Park
#t2006
#cBioinformatics
#index766772
#% 
#!
  
#*SEBINI: Software Environment for BIological Network Inference.
#@Ronald C. Taylor,Anuj Shah,Charles Treatman,Meridith Blevins
#t2006
#cBioinformatics
#index766773
#% 
#!
  
#*Hierarchical classification of hydrolases catalytic sites.
#@Igor A. Gariev,Sergey D. Varfolomeev
#t2006
#cBioinformatics
#index766774
#% 
#!
  
#*Scoring of predicted GRK2 phosphorylation sites in Nedd4-2.
#@Jonathan W. Arthur,Angeles Sanchez-Perez,David I. Cook
#t2006
#cBioinformatics
#index766775
#% 
#!
  
#*Weighted quality estimates in machine learning.
#@Levon Budagyan,Ruben Abagyan
#t2006
#cBioinformatics
#index766776
#% 
#!
  
#*Global topological features of cancer proteins in the human interactome.
#@Pall F. Jonsson,Paul A. Bates
#t2006
#cBioinformatics
#index766777
#% 
#!
  
#*Modelling interaction sites in protein domains with interaction profile hidden Markov models.
#@Torben Friedrich,Birgit Pils,Thomas Dandekar,Jörg Schultz,Tobias Müller
#t2006
#cBioinformatics
#index766778
#% 
#!
  
#*UniGene Tabulator: a full parser for the UniGene format.
#@Luca Lenzi,Flavia Frabetti,Federica Facchin,Raffaella Casadei,Lorenza Vitale,Silvia Canaider,Paolo Carinci,Maria Zannotti,Pierluigi Strippoli
#t2006
#cBioinformatics
#index766779
#% 
#!
  
#*A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity.
#@Enrico Ferraro,Allegra Via,Gabriele Ausiello,Manuela Helmer-Citterich
#t2006
#cBioinformatics
#index766780
#% 
#!
  
#*Maximum likelihood inference of imprinting and allele-specific expression from EST data.
#@Cathal Seoighe,Victoria Nembaware,Konrad Scheffler
#t2006
#cBioinformatics
#index766781
#% 
#!
  
#*- a tool for comprehensive assessment and interpretation of metabolomic data.
#@Qi Zhao,Radka Stoyanova,Shuyan Du,Paul Sajda,Truman R. Brown
#t2006
#cBioinformatics
#index766782
#% 
#!
  
#*Predicted function of the vaccinia virus G5R protein.
#@Melissa Da Silva,Ling Shen,Vasily Tcherepanov,Cristalle Watson,Chris Upton
#t2006
#cBioinformatics
#index766783
#% 
#!
  
#*Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions.
#@Tetsuya Sato,Yoshihiro Yamanishi,Katsuhisa Horimoto,Minoru Kanehisa,Hiroyuki Toh
#t2006
#cBioinformatics
#index766784
#% 
#!
  
#*Survival analysis of longitudinal microarrays.
#@Natasa Rajicic,Dianne M. Finkelstein,David A. Schoenfeld
#t2006
#cBioinformatics
#index766785
#% 
#!
  
#*APDB: a web server to evaluate the accuracy of sequence alignments using structural information.
#@Fabrice Armougom,Olivier Poirot,Sébastien Moretti,Desmond G. Higgins,Phillip Bucher,Vladimir Keduas,Cédric Notredame
#t2006
#cBioinformatics
#index766786
#% 
#!
  
#*GARD: a genetic algorithm for recombination detection.
#@Sergei L. Kosakovsky Pond,David Posada,Michael B. Gravenor,Christopher H. Woelk,Simon D. W. Frost
#t2006
#cBioinformatics
#index766787
#% 
#!
  
#*Supporting the SBML layout extension.
#@Anastasia Deckard,Frank T. Bergmann,Herbert M. Sauro
#t2006
#cBioinformatics
#index766788
#% 
#!
  
#*Eicosapentapeptide repeats (EPRs): novel repeat proteins specific to flowering plants.
#@Sunil Archak,Javaregowda Nagaraju
#t2006
#cBioinformatics
#index766789
#% 
#!
  
#*MASQOT-GUI: spot quality assessment for the two-channel microarray platform.
#@Max Bylesjö,Andreas Sjödin,Daniel Eriksson,Henrik Antti,Thomas Moritz,Stefan Jansson,Johan Trygg
#t2006
#cBioinformatics
#index766790
#% 
#!
  
#*Identification of function-associated loop motifs and application to protein function prediction.
#@Jordi Espadaler,Enrique Querol,Francesc X. Avilés,Baldo Oliva
#t2006
#cBioinformatics
#index766791
#% 
#!
  
#*Bayesian search of functionally divergent protein subgroups and their function specific residues.
#@Pekka Marttinen,Jukka Corander,Petri Törönen,Liisa Holm
#t2006
#cBioinformatics
#index766792
#% 
#!
  
#*Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities.
#@Guido Sanguinetti,Neil D. Lawrence,Magnus Rattray
#t2006
#cBioinformatics
#index766793
#% 
#!
  
#*: an R package for constructing gene regulatory networks from microarray data by using Bayesian network.
#@Xiaohui Chen,Ming Chen,Kaida Ning
#t2006
#cBioinformatics
#index766794
#% 
#!
  
#*Response to comments on "Bayesian Hierarchical Error Model for Analysis of Gene Expression Data".
#@HyungJun Cho,Jae K. Lee
#t2006
#cBioinformatics
#index766795
#% 
#!
  
#*MMM: a sequence-to-structure alignment protocol.
#@Brajesh Kumar Rai,Carlos J. Madrid-Aliste,J. Eduardo Fajardo,András Fiser
#t2006
#cBioinformatics
#index766796
#% 
#!
  
#*Bio3d: an R package for the comparative analysis of protein structures.
#@Barry J. Grant,Ana P. C. Rodrigues,Karim M. ElSawy,J. Andrew McCammon,Leo S. D. Caves
#t2006
#cBioinformatics
#index766797
#% 
#!
  
#*Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors.
#@Quansong Ruan,Debojyoti Dutta,Michael S. Schwalbach,Joshua A. Steele,Jed A. Fuhrman,Fengzhu Sun
#t2006
#cBioinformatics
#index766798
#% 
#!
  
#*Tropical - parameter estimation and simulation of reaction-diffusion models based on spatio-temporal microscopy images.
#@Markus Ulrich,Constantin Kappel,Joël Beaudouin,Stefan Hezel,Jochen Ulrich,Roland Eils
#t2006
#cBioinformatics
#index766799
#% 
#!
  
#*Meta-analysis based on control of false discovery rate: combining yeast ChIP-chip datasets.
#@Saumyadipta Pyne,Bruce Futcher,Steven Skiena
#t2006
#cBioinformatics
#index766800
#% 
#!
  
#*Mining frequent stem patterns from unaligned RNA sequences.
#@Michiaki Hamada,Koji Tsuda,Taku Kudo,Taishin Kin,Kiyoshi Asai
#t2006
#cBioinformatics
#index766801
#% 
#!
  
#*Extending MapMan: application to legume genome arrays.
#@Nicolas Goffard,Georg Weiller
#t2006
#cBioinformatics
#index766802
#% 
#!
  
#*PROBER: oligonucleotide FISH probe design software.
#@Nicholas Navin,Vladimir Grubor,Jim Hicks,Evan Leibu,Elizabeth Thomas,Jennifer Troge,Michael Riggs,Pär Lundin,Susanne Månér,Jonathan Sebat,Anders Zetterberg,Michael Wigler
#t2006
#cBioinformatics
#index766803
#% 
#!
  
#*Dragon Promoter Mapper (DPM): a Bayesian framework for modelling promoter structures.
#@Rajesh Chowdhary,Sin Lam Tan,R. Ayesha Ali,Brent Boerlage,Limsoon Wong,Vladimir B. Bajic
#t2006
#cBioinformatics
#index766804
#% 
#!
  
#*Estimation of false discovery proportion under general dependence.
#@Yudi Pawitan,Stefano Calza,Alexander Ploner
#t2006
#cBioinformatics
#index766805
#% 
#!
  
#*ArrayFusion: a web application for multi-dimensional analysis of CGH, SNP and microarray data.
#@Tsun-Po Yang,Ting-Yu Chang,Chi-Hung Lin,Ming-Ta Hsu,Hsei-Wei Wang
#t2006
#cBioinformatics
#index766806
#% 
#!
  
#*Prediction of mRNA polyadenylation sites by support vector machine.
#@Yiming Cheng,Robert M. Miura,Bin Tian
#t2006
#cBioinformatics
#index766807
#% 
#!
  
#*Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences.
#@Jan Mrázek,Shaohua Xie
#t2006
#cBioinformatics
#index766808
#% 
#!
  
#*PYCHEM: a multivariate analysis package for python.
#@Roger M. Jarvis,David Broadhurst,Helen E. Johnson,Noel M. O'Boyle,Royston Goodacre
#t2006
#cBioinformatics
#index766809
#% 
#!
  
#*A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.
#@Lang Li,Alfred S. L. Cheng,Victor X. Jin,Henry H. Paik,Meiyun Fan,Xiaoman Li,Wei Zhang,Jason Robarge,Curtis Balch,Ramana V. Davuluri,Sun Kim,Tim Hui-Ming Huang,Kenneth P. Nephew
#t2006
#cBioinformatics
#index766810
#% 
#!
  
#*The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.
#@Kevin Y. Yip,Haiyuan Yu,Philip M. Kim,Martin H. Schultz,Mark Gerstein
#t2006
#cBioinformatics
#index766811
#% 
#!
  
#*Inferring gene regulatory networks from multiple microarray datasets.
#@Yong Wang,Trupti Joshi,Xiang-Sun Zhang,Dong Xu,Luonan Chen
#t2006
#cBioinformatics
#index766812
#% 
#!
  
#*SANTA domain: a novel conserved protein module in with potential involvement in chromatin regulation.
#@Dapeng Zhang,Christopher J. Martyniuk,Vance L. Trudeau
#t2006
#cBioinformatics
#index766813
#% 
#!
  
#*A new representation for protein secondary structure prediction based on frequent patterns.
#@Fabian Birzele,Stefan Kramer
#t2006
#cBioinformatics
#index766814
#% 
#!
  
#*A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.
#@Jiang Du,Joel S. Rozowsky,Jan O. Korbel,Zhengdong D. Zhang,Thomas E. Royce,Martin H. Schultz,Michael Snyder,Mark Gerstein
#t2006
#cBioinformatics
#index766815
#% 
#!
  
#*NMPP: a user-customized NimbleGen microarray data processing pipeline.
#@Xiangfeng Wang,Hang He,Lei Li,Runsheng Chen,Xing Wang Deng,Songgang Li
#t2006
#cBioinformatics
#index766816
#% 
#!
  
#*Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network.
#@Patricia Buendia,Giri Narasimhan
#t2006
#cBioinformatics
#index766817
#% 
#!
  
#*Measuring covariation in RNA alignments: physical realism improves information measures.
#@Stinus Lindgreen,Paul P. Gardner,Anders Krogh
#t2006
#cBioinformatics
#index766818
#% 
#!
  
#*The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria.
#@Kira S. Makarova,Nick V. Grishin,Eugene V. Koonin
#t2006
#cBioinformatics
#index766819
#% 
#!
  
#*sGAL: a computational method for finding surface exposed sites in proteins suitable for Cys-mediated cross-linking.
#@G. Andrew Woolley,En-shiun Lee,Fuzhong Zhang
#t2006
#cBioinformatics
#index766820
#% 
#!
  
#*MetaQuant: a tool for the automatic quantification of GC/MS-based metabolome data.
#@Boyke Bunk,Martin Kucklick,Rochus Jonas,Richard Münch,Max Schobert,Dieter Jahn,Karsten Hiller
#t2006
#cBioinformatics
#index766821
#% 
#!
  
#*Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks.
#@Adriano V. Werhli,Marco Grzegorczyk,Dirk Husmeier
#t2006
#cBioinformatics
#index766822
#% 
#!
  
#*SCAssign: a sparky extension for the NMR resonance assignment of aliphatic side-chains of uniformly C, N-labeled large proteins.
#@Lei Zhang,Daiwen Yang
#t2006
#cBioinformatics
#index766823
#% 
#!
  
#*Solvated docking: introducing water into the modelling of biomolecular complexes.
#@Aalt D. J. van Dijk,Alexandre M. J. J. Bonvin
#t2006
#cBioinformatics
#index766824
#% 
#!
  
#*Sebida: a database for the functional and evolutionary analysis of genes with sex-biased expression.
#@Florian Gnad,John Parsch
#t2006
#cBioinformatics
#index766825
#% 
#!
  
#*PromoterExplorer: an effective promoter identification method based on the AdaBoost algorithm.
#@Xudong Xie,Shuanhu Wu,Kin-Man Lam,Hong Yan
#t2006
#cBioinformatics
#index766826
#% 
#!
  
#*Synthetic biology - putting engineering into biology.
#@Matthias Heinemann,Sven Panke
#t2006
#cBioinformatics
#index766827
#% 
#!
  
#*PSoL: a positive sample only learning algorithm for finding non-coding RNA genes.
#@Chunlin Wang,Chris H. Q. Ding,Richard F. Meraz,Stephen R. Holbrook
#t2006
#cBioinformatics
#index766828
#% 
#!
  
#*Structural genomics meets computational biology.
#@Alex Bateman,Alfonso Valencia
#t2006
#cBioinformatics
#index766829
#% 
#!
  
#*Bio-Ontology and text: bridging the modeling gap.
#@Carol Friedman,Tara Borlawsky,Lyudmila Shagina,H. Rosie Xing,Yves A. Lussier
#t2006
#cBioinformatics
#index766830
#% 
#!
  
#*Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer.
#@Antonio Reverter,Aaron Ingham,Sigrid A. Lehnert,Siok-Hwee Tan,Yonghong Wang,Abhirami Ratnakumar,Brian P. Dalrymple
#t2006
#cBioinformatics
#index766831
#% 
#!
  
#*MARD: a new method to detect differential gene expression in treatment-control time courses.
#@Chao Cheng,Xiaotu Ma,Xiting Yan,Fengzhu Sun,Lei M. Li
#t2006
#cBioinformatics
#index766832
#% 
#!
  
#*Finding motifs from all sequences with and without binding sites.
#@Henry C. M. Leung,Francis Y. L. Chin
#t2006
#cBioinformatics
#index766833
#% 
#!
  
#*Partition resampling and extrapolation averaging: approximation methods for quantifying gene expression in large numbers of short oligonucleotide arrays.
#@Darlene R. Goldstein
#t2006
#cBioinformatics
#index766834
#% 
#!
  
#*Probalign: multiple sequence alignment using partition function posterior probabilities.
#@Usman Roshan,Dennis R. Livesay
#t2006
#cBioinformatics
#index766835
#% 
#!
  
#*Group testing for pathway analysis improves comparability of different microarray datasets.
#@Theodora Manoli,Norbert Gretz,Hermann-Josef Gröne,Marc Kenzelmann,Roland Eils,Benedikt Brors
#t2006
#cBioinformatics
#index766836
#% 
#!
  
#*ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting.
#@Michaël Bekaert,John F. Atkins,Pavel V. Baranov
#t2006
#cBioinformatics
#index766837
#% 
#!
  
#*IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics.
#@Dequan Li,Wen Gao,Charles X. Ling,Xiaobiao Wang,Ruixiang Sun,Simin He
#t2006
#cBioinformatics
#index766838
#% 
#!
  
#*Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the pathogenicity islands.
#@Georgios S. Vernikos,Julian Parkhill
#t2006
#cBioinformatics
#index766839
#% 
#!
  
#*Design and implementation of a tool for translating SBML into the biochemical stochastic pi-calculus.
#@Claudio Eccher,Corrado Priami
#t2006
#cBioinformatics
#index766840
#% 
#!
  
#*Peptide length-based prediction of peptide-MHC class II binding.
#@Stewart T. Chang,Debashis Ghosh,Denise E. Kirschner,Jennifer J. Linderman
#t2006
#cBioinformatics
#index766841
#% 
#!
  
#*The ties problem resulting from counting-based error estimators and its impact on gene selection algorithms.
#@Xin Zhou,K. Z. Mao
#t2006
#cBioinformatics
#index766842
#% 
#!
  
#*Gene selection in cancer classification using sparse logistic regression with Bayesian regularization.
#@Gavin C. Cawley,Nicola L. C. Talbot
#t2006
#cBioinformatics
#index766843
#% 
#!
  
#*GeneRecon - a coalescent based tool for fine-scale association mapping.
#@Thomas Mailund,Mikkel H. Schierup,Christian N. S. Pedersen,Jesper N. Madsen,Jotun Hein,Leif Schauser
#t2006
#cBioinformatics
#index766844
#% 
#!
  
#*CREMOFAC - a database of chromatin remodeling factors.
#@Agrawal Shipra,Kumar Chetan,M. R. S. Rao
#t2006
#cBioinformatics
#index766845
#% 
#!
  
#*Hierarchical and multi-resolution representation of protein flexibility.
#@Yong Zhao,Daniel Stoffler,Michel F. Sanner
#t2006
#cBioinformatics
#index766846
#% 
#!
  
#*Kalman filtering for disease-state estimation from microarray data.
#@János Z. Kelemen,Attila Kertész-Farkas,András Kocsor,László G. Puskás
#t2006
#cBioinformatics
#index766847
#% 
#!
  
#*Robust inference of positive selection from recombining coding sequences.
#@Konrad Scheffler,Darren P. Martin,Cathal Seoighe
#t2006
#cBioinformatics
#index766848
#% 
#!
  
#*Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures.
#@N. Morozova,J. Allers,J. Myers,Y. Shamoo
#t2006
#cBioinformatics
#index766849
#% 
#!
  
#*iFold: a platform for interactive folding simulations of proteins.
#@Shantanu Sharma,Feng Ding,Huifen Nie,Daniel Watson,Aditya Unnithan,Jameson Lopp,Diane Pozefsky,Nikolay V. Dokholyan
#t2006
#cBioinformatics
#index766850
#% 
#!
  
#*Model-based boosting in high dimensions.
#@Torsten Hothorn,Peter Bühlmann
#t2006
#cBioinformatics
#index766851
#% 
#!
  
#*JVirGel 2.0: computational prediction of proteomes separated via two-dimensional gel electrophoresis under consideration of membrane and secreted proteins.
#@Karsten Hiller,Andreas Grote,Matthias Maneck,Richard Münch,Dieter Jahn
#t2006
#cBioinformatics
#index766852
#% 
#!
  
#*Hypothesis testing approaches to the exon prediction problem.
#@Mireia Vilardell,Alex Sánchez-Pla
#t2006
#cBioinformatics
#index766853
#% 
#!
  
#*Regression analysis for comparing protein samples with O/O stable-isotope labeled mass spectrometry.
#@J. E. Ecker-Passow,Ann L. Oberg,Terry M. Therneau,C. J. Mason,Douglas W. Mahoney,K. L. Johnson,J. E. Olson,H. R. Bergen III
#t2006
#cBioinformatics
#index766854
#% 
#!
  
#*Systematic component selection for gene-network refinement.
#@Nicole Radde,Jutta Gebert,Christian V. Forst
#t2006
#cBioinformatics
#index766855
#% 
#!
  
#*ChromoScan: a scan statistic application for identifying chromosomal regions in genomic studies.
#@Yan V. Sun,Douglas M. Jacobsen,Sharon L. R. Kardia
#t2006
#cBioinformatics
#index766856
#% 
#!
  
#*Significant sequence similarities in promoters and precursors of non-conserved microRNAs.
#@Yu Wang,Tobias Hindemitt,Klaus F. X. Mayer
#t2006
#cBioinformatics
#index766857
#% 
#!
  
#*A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions.
#@A. Callegaro,Dario Basso,Silvio Bicciato
#t2006
#cBioinformatics
#index766858
#% 
#!
  
#*Dynamic partitioning for hybrid simulation of the bistable HIV-1 transactivation network.
#@Mark Griffith,Tod Courtney,Jean Peccoud,William H. Sanders
#t2006
#cBioinformatics
#index766859
#% 
#!
  
#*Support vector machines for prediction of dihedral angle regions.
#@Olav Zimmermann,Ulrich H. E. Hansmann
#t2006
#cBioinformatics
#index766860
#% 
#!
  
#*Identifying -regulatory modules by combining comparative and compositional analysis of DNA.
#@Nora Pierstorff,Casey M. Bergman,Thomas Wiehe
#t2006
#cBioinformatics
#index766861
#% 
#!
  
#*Reliable gene signatures for microarray classification: assessment of stability and performance.
#@Chad A. Davis,Fabian Gerick,Volker Hintermair,Caroline C. Friedel,Katrin Fundel,Robert Küffner,Ralf Zimmer
#t2006
#cBioinformatics
#index766862
#% 
#!
  
#*A large quantity of novel human antisense transcripts detected by LongSAGE.
#@Xijin Ge,Qingfa Wu,Yong-Chul Jung,Jun Chen,San Ming Wang
#t2006
#cBioinformatics
#index766863
#% 
#!
  
#*Clearcut: a fast implementation of relaxed neighbor joining.
#@Luke Sheneman,Jason Evans,James A. Foster
#t2006
#cBioinformatics
#index766864
#% 
#!
  
#*Large scale data mining approach for gene-specific standardization of microarray gene expression data.
#@Sukjoon Yoon,Young Yang,Jiwon Choi,Jeeweon Seong
#t2006
#cBioinformatics
#index766865
#% 
#!
  
#*DOCKGROUND resource for studying protein-protein interfaces.
#@Dominique Douguet,Huei-Chi Chen,Andrey Tovchigrechko,Ilya A. Vakser
#t2006
#cBioinformatics
#index766866
#% 
#!
  
#*Anisotropic network model: systematic evaluation and a new web interface.
#@Eran Eyal,Lee-Wei Yang,Ivet Bahar
#t2006
#cBioinformatics
#index766867
#% 
#!
  
#*Cell++ - simulating biochemical pathways.
#@Christopher Sanford,Matthew L. K. Yip,Carl White,John Parkinson
#t2006
#cBioinformatics
#index766868
#% 
#!
  
#*Support vector machine learning from heterogeneous data: an empirical analysis using protein sequence and structure.
#@Darrin P. Lewis,Tony Jebara,William Stafford Noble
#t2006
#cBioinformatics
#index766869
#% 
#!
  
#*Few crucial links assure checkpoint efficiency in the yeast cell-cycle network.
#@Gautier Stoll,Jacques Rougemont,Felix Naef
#t2006
#cBioinformatics
#index766870
#% 
#!
  
#*Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information.
#@Emidio Capriotti,Remo Calabrese,Rita Casadio
#t2006
#cBioinformatics
#index766871
#% 
#!
  
#*ARCS: an aggregated related column scoring scheme for aligned sequences.
#@Bin Song,Jeong-Hyeon Choi,Guangyu Chen,Jacek Szymanski,Guo-Qiang Zhang,Anthony K. H. Tung,Jaewoo Kang,Sun Kim,Jiong Yang
#t2006
#cBioinformatics
#index766872
#% 
#!
  
#*Prediction of oxidoreductase-catalyzed reactions based on atomic properties of metabolites.
#@Fangping Mu,Pat J. Unkefer,Clifford J. Unkefer,William S. Hlavacek
#t2006
#cBioinformatics
#index766873
#% 
#!
  
#*Software for dynamic analysis of tracer-based metabolomic data: estimation of metabolic fluxes and their statistical analysis.
#@Vitaly A. Selivanov,Silvia Marin,Paul W.-N. Lee,Marta Cascante
#t2006
#cBioinformatics
#index766874
#% 
#!
  
#*ssSNPer: identifying statistically similar SNPs to aid interpretation of genetic association studies.
#@Dale R. Nyholt
#t2006
#cBioinformatics
#index766875
#% 
#!
  
#*CART variance stabilization and regularization for high-throughput genomic data.
#@Ariadni Papana,Hemant Ishwaran
#t2006
#cBioinformatics
#index766876
#% 
#!
  
#*A scalable method for integration and functional analysis of multiple microarray datasets.
#@Curtis Huttenhower,Matthew A. Hibbs,Chad L. Myers,Olga G. Troyanskaya
#t2006
#cBioinformatics
#index766877
#% 
#!
  
#*High-resolution spatial normalization for microarrays containing embedded technical replicates.
#@Daniel S. Yuan,Rafael A. Irizarry
#t2006
#cBioinformatics
#index766878
#% 
#!
  
#*An application for assessing quality of RNA hybridized to Affymetrix GeneChips.
#@Kellie J. Archer,Tobias Guennel
#t2006
#cBioinformatics
#index766879
#% 
#!
  
#*Meisetz and the birth of the KRAB motif.
#@Zoë Birtle,Chris P. Ponting
#t2006
#cBioinformatics
#index766880
#% 
#!
  
#*Targeted projection pursuit for visualizing gene expression data classifications.
#@Joe Faith,Robert Mintram,Maia Angelova
#t2006
#cBioinformatics
#index766881
#% 
#!
  
#*TESD: a transposable element dynamics simulation environment.
#@Grégory Deceliere,Yann Letrillard,Sandrine Charles,Christian Biémont
#t2006
#cBioinformatics
#index766882
#% 
#!
  
#*RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.
#@Alexandros Stamatakis
#t2006
#cBioinformatics
#index766883
#% 
#!
  
#*General framework for developing and evaluating database scoring algorithms using the TANDEM search engine.
#@Brendan MacLean,Jimmy K. Eng,Ronald C. Beavis,Martin McIntosh
#t2006
#cBioinformatics
#index766884
#% 
#!
  
#*Evaluation and comparison of gene clustering methods in microarray analysis.
#@Anbupalam Thalamuthu,Indranil Mukhopadhyay,Xiaojing Zheng,George C. Tseng
#t2006
#cBioinformatics
#index766885
#% 
#!
  
#*Application of a simple likelihood ratio approximant to protein sequence classification.
#@László Kaján,Attila Kertész-Farkas,Dino Franklin,Neli Ivanova,András Kocsor,Sándor Pongor
#t2006
#cBioinformatics
#index766886
#% 
#!
  
#*SequenceLDhot: detecting recombination hotspots.
#@Paul Fearnhead
#t2006
#cBioinformatics
#index766887
#% 
#!
  
#*Comments on "Bayesian hierarchical error model for analysis of gene expression data".
#@Xiao-Lin Wu,Larry J. Forney,Paul Joyce
#t2006
#cBioinformatics
#index766888
#% 
#!
  
#*ADGO: analysis of differentially expressed gene sets using composite GO annotation.
#@Dougu Nam,Sang-Bae Kim,Seon-Kyu Kim,Sungjin Yang,Seon-Young Kim,In-Sun Chu
#t2006
#cBioinformatics
#index766889
#% 
#!
  
#*Identifying bacterial genes and endosymbiont DNA with Glimmer.
#@Arthur L. Delcher,Kirsten A. Bratke,Edwin C. Powers,Steven Salzberg
#t2007
#cBioinformatics
#index766890
#% 
#!
  
#*Evaluating the performance of microarray segmentation algorithms.
#@Antti Lehmussola,Pekka Ruusuvuori,Olli Yli-Harja
#t2006
#cBioinformatics
#index766891
#% 
#!
  
#*ALIBABA: PubMed as a graph.
#@Conrad Plake,Torsten Schiemann,Marcus Pankalla,Jörg Hakenberg,Ulf Leser
#t2006
#cBioinformatics
#index766892
#% 
#!
  
#*Semi-supervised learning via penalized mixture model with application to microarray sample classification.
#@Wei Pan,Xiaotong Shen,Aixiang Jiang,Robert P. Hebbel
#t2006
#cBioinformatics
#index766893
#% 
#!
  
#*G8: a novel domain associated with polycystic kidney disease and non-syndromic hearing loss.
#@Quan-Yuan He,Xiang-Hua Liu,Qiang Li,David J. Studholme,Xuan-Wen Li,Song-Ping Liang
#t2006
#cBioinformatics
#index766894
#% 
#!
  
#*APOPTO-CELL - a simulation tool and interactive database for analyzing cellular susceptibility to apoptosis.
#@Heinrich J. Huber,Markus Rehm,Martin Plchut,Heiko Düssmann,Jochen H. M. Prehn
#t2007
#cBioinformatics
#index766895
#% 
#!
  
#*Quantitative performance metrics for robustness in circadian rhythms.
#@Neda Bagheri,Jörg Stelling,Francis J. Doyle III
#t2007
#cBioinformatics
#index766896
#% 
#!
  
#*ProtBuD: a database of biological unit structures of protein families and superfamilies.
#@Qifang Xu,Adrian A. Canutescu,Zoran Obradovic,Roland L. Dunbrack Jr.
#t2006
#cBioinformatics
#index766897
#% 
#!
  
#*Identifying HLA supertypes by learning distance functions.
#@Tomer Hertz,Chen Yanover
#t2007
#cBioinformatics
#index766898
#% 
#!
  
#*Modular organization of protein interaction networks.
#@Feng Luo,Yunfeng Yang,Chin-Fu Chen,Roger Chang,Jizhong Zhou,Richard H. Scheuermann
#t2007
#cBioinformatics
#index766899
#% 
#!
  
#*Phylogenetic reconstruction from non-genomic data.
#@José Carlos Clemente,Kenji Satou,Gabriel Valiente
#t2007
#cBioinformatics
#index766900
#% 
#!
  
#*Difference detection in LC-MS data for protein biomarker discovery.
#@Jennifer Listgarten,Radford M. Neal,Sam T. Roweis,Peter Wong,Andrew Emili
#t2007
#cBioinformatics
#index766901
#% 
#!
  
#*SChiSM2: creating interactive web page annotations of molecular structure models using Jmol.
#@Stephen A. Cammer
#t2007
#cBioinformatics
#index766902
#% 
#!
  
#*grouping of peptide/HLA class I complexes using structural interaction characteristics.
#@Joo Chuan Tong,Tin Wee Tan,Shoba Ranganathan
#t2007
#cBioinformatics
#index766903
#% 
#!
  
#*SNiPer-HD: improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays.
#@Jianping Hua,David W. Craig,Marcel Brun,Jennifer Webster,Victoria Zismann,Waibhav Tembe,Keta Joshipura,Matthew J. Huentelman,Edward R. Dougherty,Dietrich A. Stephan
#t2007
#cBioinformatics
#index766904
#% 
#!
  
#*AGScan: a pluggable microarray image quantification software based on the ImageJ library.
#@R. Cathelin,F. Lopez,Ch. Klopp
#t2007
#cBioinformatics
#index766905
#% 
#!
  
#*A framework for gene expression analysis.
#@Andreas W. Schreiber,Ute Baumann
#t2007
#cBioinformatics
#index766906
#% 
#!
  
#*Predicting transcription factor affinities to DNA from a biophysical model.
#@Helge G. Roider,Aditi Kanhere,Thomas Manke,Martin Vingron
#t2007
#cBioinformatics
#index766907
#% 
#!
  
#*SAGA: a subgraph matching tool for biological graphs.
#@Yuanyuan Tian,Richard C. McEachin,Carlos Santos,David J. States,Jignesh M. Patel
#t2007
#cBioinformatics
#index766908
#% 
#!
  
#*CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data.
#@Xiaotu Ma,Hyunju Lee,Li Wang,Fengzhu Sun
#t2007
#cBioinformatics
#index766909
#% 
#!
  
#*A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data.
#@Nir Yosef,Zohar Yakhini,Anya Tsalenko,Vessela Kristensen,Anne-Lise Børresen-Dale,Eytan Ruppin,Roded Sharan
#t2007
#cBioinformatics
#index766910
#% 
#!
  
#*Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family.
#@Rafael Najmanovich,Abdellah Allali-Hassani,Richard J. Morris,Ludmila Dombrovsky,Patricia W. Pan,Masoud Vedadi,Alexander N. Plotnikov,Aled M. Edwards,Cheryl H. Arrowsmith,Janet M. Thornton
#t2007
#cBioinformatics
#index766911
#% 
#!
  
#*Simple sequence repeats in organellar genomes of rice: frequency and distribution in genic and intergenic regions.
#@Passoupathy Rajendrakumar,Akshaya Kumar Biswal,Sena M. Balachandran,Kommoju Srinivasarao,Raman M. Sundaram
#t2007
#cBioinformatics
#index766912
#% 
#!
  
#*Efficient parsimony-based methods for phylogenetic network reconstruction.
#@Guohua Jin,Luay Nakhleh,Sagi Snir,Tamir Tuller
#t2007
#cBioinformatics
#index766913
#% 
#!
  
#*ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats.
#@J. A. Falkner,J. W. Falkner,P. C. Andrews
#t2007
#cBioinformatics
#index766914
#% 
#!
  
#*Interpretation of ANOVA models for microarray data using PCA.
#@Jorn R. de Haan,Ron Wehrens,Susanne Bauerschmidt,Ester Piek,René C. van Schaik,Lutgarde M. C. Buydens
#t2007
#cBioinformatics
#index766915
#% 
#!
  
#*QOMA: quasi-optimal multiple alignment of protein sequences.
#@Xu Zhang,Tamer Kahveci
#t2007
#cBioinformatics
#index766916
#% 
#!
  
#*Optimization of probe coverage for high-resolution oligonucleotide aCGH.
#@Doron Lipson,Zohar Yakhini,Yonatan Aumann
#t2007
#cBioinformatics
#index766917
#% 
#!
  
#*Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays.
#@Waibhav Tembe,Nela Zavaljevski,Elizabeth A. Bode,Catherine Chase,Jeanne Geyer,Leonard P. Wasieloski,Gary Benson,Jaques Reifman
#t2007
#cBioinformatics
#index766918
#% 
#!
  
#*Recovering metabolic pathways via optimization.
#@John E. Beasley,Francisco J. Planes
#t2007
#cBioinformatics
#index766919
#% 
#!
  
#*Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation.
#@Ivica Letunic,Peer Bork
#t2007
#cBioinformatics
#index766920
#% 
#!
  
#*Linkage analysis using sex-specific recombination fractions with GENEHUNTER-MODSCORE.
#@Johannes Dietter,Manuel Mattheisen,Robert Fürst,Franz Rüschendorf,Thomas F. Wienker,Konstantin Strauch
#t2007
#cBioinformatics
#index766921
#% 
#!
  
#*Electrostatic potentials of proteins in water: a structured continuum approach.
#@Andreas Hildebrandt,Ralf Blossey,Sergej Rjasanow,Oliver Kohlbacher,Hans-Peter Lenhof
#t2007
#cBioinformatics
#index766922
#% 
#!
  
#*Learning probabilistic models of -regulatory modules that represent logical and spatial aspects.
#@Keith Noto,Mark Craven
#t2007
#cBioinformatics
#index766923
#% 
#!
  
#*GenoProfiler: batch processing of high-throughput capillary fingerprinting data.
#@Frank M. You,Ming-Cheng Luo,Yong Qiang Gu,Gerard R. Lazo,Karin Deal,Jan Dvorak,Olin D. Anderson
#t2007
#cBioinformatics
#index766924
#% 
#!
  
#*Tandem repeats over the edit distance.
#@Dina Sokol,Gary Benson,Justin Tojeira
#t2007
#cBioinformatics
#index766925
#% 
#!
  
#*ISIS: interaction sites identified from sequence.
#@Yanay Ofran,Burkhard Rost
#t2007
#cBioinformatics
#index766926
#% 
#!
  
#*Simulating multiplexed SNP discovery rates using base-specific cleavage and mass spectrometry.
#@Sebastian Böcker
#t2007
#cBioinformatics
#index766927
#% 
#!
  
#*Computing the maximum similarity bi-clusters of gene expression data.
#@Xiaowen Liu,Lusheng Wang
#t2007
#cBioinformatics
#index766928
#% 
#!
  
#*Simulated maximum likelihood method for estimating kinetic rates in gene expression.
#@Tianhai Tian,Songlin Xu,Junbin Gao,Kevin Burrage
#t2007
#cBioinformatics
#index766929
#% 
#!
  
#*ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes.
#@Gabriela G. Loots,Ivan Ovcharenko
#t2007
#cBioinformatics
#index766930
#% 
#!
  
#*TOPP - the OpenMS proteomics pipeline.
#@Oliver Kohlbacher,Knut Reinert,Clemens Gröpl,Eva Lange,Nico Pfeifer,Ole Schulz-Trieglaff,Marc Sturm
#t2007
#cBioinformatics
#index766931
#% 
#!
  
#*Multiple alignment by sequence annealing.
#@Ariel S. Schwartz,Lior Pachter
#t2007
#cBioinformatics
#index766932
#% 
#!
  
#*Sungear: interactive visualization and functional analysis of genomic datasets.
#@Christopher S. Poultney,Rodrigo A. Gutiérrez,Manpreet S. Katari,Miriam L. Gifford,W. Bradford Paley,Gloria M. Coruzzi,Dennis Shasha
#t2007
#cBioinformatics
#index766933
#% 
#!
  
#*Vorolign - fast structural alignment using Voronoi contacts.
#@Fabian Birzele,Jan E. Gewehr,Gergely Csaba,Ralf Zimmer
#t2007
#cBioinformatics
#index766934
#% 
#!
  
#*Identification of conserved protein complexes based on a model of protein network evolution.
#@Eitan Hirsh,Roded Sharan
#t2007
#cBioinformatics
#index766935
#% 
#!
  
#*Estimating -values in small microarray experiments.
#@Hyuna Yang,Gary A. Churchill
#t2007
#cBioinformatics
#index766936
#% 
#!
  
#*Phylogeny reconstruction: increasing the accuracy of pairwise distance estimation using Bayesian inference of evolutionary rates.
#@Matan Ninio,Eyal Privman,Tal Pupko,Nir Friedman
#t2007
#cBioinformatics
#index766937
#% 
#!
  
#*A tale of two tails: why are terminal residues of proteins exposed?
#@Etai Jacob,Ron Unger
#t2007
#cBioinformatics
#index766938
#% 
#!
  
#*Incremental window-based protein sequence alignment algorithms.
#@Huzefa Rangwala,George Karypis
#t2007
#cBioinformatics
#index766939
#% 
#!
  
#*Tree and rate estimation by local evaluation of heterochronous nucleotide data.
#@Zhu Yang,John D. O'Brien,Xiaobin Zheng,Huaiqiu Zhu,Zhen-Su She
#t2007
#cBioinformatics
#index766940
#% 
#!
  
#*Using median sets for inferring phylogenetic trees.
#@Matthias Bernt,Daniel Merkle,Martin Middendorf
#t2007
#cBioinformatics
#index766941
#% 
#!
  
#*Rediscovering secondary structures as network motifs - an unsupervised learning approach.
#@Barak Raveh,Ofer Rahat,Ronen Basri,Gideon Schreiber
#t2007
#cBioinformatics
#index766942
#% 
#!
  
#*PrepMS: TOF MS data graphical preprocessing tool.
#@Yuliya V. Karpievitch,Elizabeth G. Hill,Adam J. Smolka,Jeffrey S. Morris,Kevin R. Coombes,Keith A. Baggerly,Jonas S. Almeida
#t2007
#cBioinformatics
#index766943
#% 
#!
  
#*Simultaneous alignment and annotation of -regulatory regions.
#@Abha Singh Bais,Steffen Grossmann,Martin Vingron
#t2007
#cBioinformatics
#index766944
#% 
#!
  
#*Improved breast cancer prognosis through the combination of clinical and genetic markers.
#@Yijun Sun,Steve Goodison,Jian Li,Li Liu,William G. Farmerie
#t2007
#cBioinformatics
#index766945
#% 
#!
  
#*GECO-linear visualization for comparative genomics.
#@C. T. Kuenne,Rohit Ghai,Trinad Chakraborty,Torsten Hain
#t2007
#cBioinformatics
#index766946
#% 
#!
  
#*Constrained models of evolution lead to improved prediction of functional linkage from correlated gain and loss of genes.
#@Daniel Barker,Andrew Meade,Mark Pagel
#t2007
#cBioinformatics
#index766947
#% 
#!
  
#*Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions.
#@Yujin Chung,Seung Yeoun Lee,Robert C. Elston,Taesung Park
#t2007
#cBioinformatics
#index766948
#% 
#!
  
#*LdCompare: rapid computation of single- and multiple-marker and genetic coverage.
#@K. Hao,X. Di,S. Cawley
#t2007
#cBioinformatics
#index766949
#% 
#!
  
#*PROTERAN: animated terrain evolution for visual analysis of patterns in protein folding trajectory.
#@Ruhong Zhou,Laxmi Parida,Kush Kapila,Sudhir P. Mudur
#t2007
#cBioinformatics
#index766950
#% 
#!
  
#*Towards clustering of incomplete microarray data without the use of imputation.
#@Dae-Won Kim,Ki Young Lee,Kwang H. Lee,Doheon Lee
#t2007
#cBioinformatics
#index766951
#% 
#!
  
#*Using an alignment of fragment strings for comparing protein structures.
#@Iddo Friedberg,Tim Harder,Rachel Kolodny,Einat Sitbon,Zhanwen Li,Adam Godzik
#t2007
#cBioinformatics
#index766952
#% 
#!
  
#*Combining functional and linkage disequilibrium information in the selection of tag SNPs.
#@Pak Chung Sham,Sio Iong Ao,J. S. H. Kwan,P. Kao,F. Cheung,Pui-Yee Fong,Michael K. Ng
#t2007
#cBioinformatics
#index766953
#% 
#!
  
#*Complementary intron sequence motifs associated with human exon repetition: a role for intragenic, inter-transcript interactions in gene expression.
#@Richard J. Dixon,Ian C. Eperon,Nilesh J. Samani
#t2007
#cBioinformatics
#index766954
#% 
#!
  
#*Computational prediction of novel components of lung transcriptional networks.
#@M. Juanita Martinez,Andrew D. Smith,Bilan Li,Michael Q. Zhang,Kevin S. Harrod
#t2007
#cBioinformatics
#index766955
#% 
#!
  
#*KGraph: a system for visualizing and evaluating complex genetic associations.
#@Reagan J. Kelly,Douglas M. Jacobsen,Yan V. Sun,Jennifer A. Smith,Sharon L. R. Kardia
#t2007
#cBioinformatics
#index766956
#% 
#!
  
#*Striped Smith-Waterman speeds database searches six times over other SIMD implementations.
#@Michael Farrar
#t2007
#cBioinformatics
#index766957
#% 
#!
  
#*Inferring phylogeny from whole genomes.
#@Pawel Górecki,Jerzy Tiuryn
#t2007
#cBioinformatics
#index766958
#% 
#!
  
#*Biological network comparison using graphlet degree distribution.
#@Natasa Przulj
#t2007
#cBioinformatics
#index766959
#% 
#!
  
#*Designing patterns for profile HMM search.
#@Yanni Sun,Jeremy Buhler
#t2007
#cBioinformatics
#index766960
#% 
#!
  
#*Neural network prediction of peptide separation in strong anion exchange chromatography.
#@Cheolhwan Oh,Stanislaw H. Zak,Hamid Mirzaei,Charles R. Buck,Fred E. Regnier,Xiang Zhang
#t2007
#cBioinformatics
#index766961
#% 
#!
  
#*Prediction and simulation of motion in pairs of transmembrane alpha-helices.
#@Angela Enosh,Sarel J. Fleishman,Nir Ben-Tal,Dan Halperin
#t2007
#cBioinformatics
#index766962
#% 
#!
  
#*DASS: efficient discovery and -value calculation of substructures in unordered data.
#@Jens Hollunder,Maik Friedel,Andreas Beyer,Christopher T. Workman,Thomas Wilhelm
#t2007
#cBioinformatics
#index766963
#% 
#!
  
#*Merging microarray cell synchronization experiments through curve alignment.
#@Filip Hermans,Elena Tsiporkova
#t2007
#cBioinformatics
#index766964
#% 
#!
  
#*Dependence network modeling for biomarker identification.
#@Peng Qiu,Z. Jane Wang,K. J. Ray Liu,Zhang-Zhi Hu,Cathy H. Wu
#t2007
#cBioinformatics
#index766965
#% 
#!
  
#*WHAP: haplotype-based association analysis.
#@Shaun Purcell,Mark J. Daly,Pak Chung Sham
#t2007
#cBioinformatics
#index766966
#% 
#!
  
#*Ontology development for biological systems: immunology.
#@Alexander D. Diehl,Jamie A. Lee,Richard H. Scheuermann,Judith A. Blake
#t2007
#cBioinformatics
#index766967
#% 
#!
  
#*Editorial.
#@Alfonso Valencia,Alex Bateman
#t2007
#cBioinformatics
#index766968
#% 
#!
  
#*Genetic code symmetry and efficient design of GC-constrained coding sequences.
#@Matan Gavish,Amnon Peled,Benny Chor
#t2007
#cBioinformatics
#index766969
#% 
#!
  
#*Similarities and differences of gene expression in yeast stress conditions.
#@Oleg Rokhlenko,Ydo Wexler,Zohar Yakhini
#t2007
#cBioinformatics
#index766970
#% 
#!
  
#*EBIMed - text crunching to gather facts for proteins from Medline.
#@Dietrich Rebholz-Schuhmann,Harald Kirsch,Miguel Arregui,Sylvain Gaudan,Mark Riethoven,Peter Stoehr
#t2007
#cBioinformatics
#index766971
#% 
#!
  
#*Exploiting large scale computing to construct high resolution linkage disequilibrium maps of the human genome.
#@Winston Lau,Tai-Yue Kuo,William Tapper,Simon Cox,Andrew Collins
#t2007
#cBioinformatics
#index766972
#% 
#!
  
#*Reliable prediction of Drosha processing sites improves microRNA gene prediction.
#@Snorre A. Helvik,Ola R. Snøve Jr.,Pål Sætrom
#t2007
#cBioinformatics
#index766973
#% 
#!
  
#*Efficient inference on known phylogenetic trees using Poisson regression.
#@Saharon Rosset
#t2007
#cBioinformatics
#index766974
#% 
#!
  
#*Inferential, robust non-negative matrix factorization analysis of microarray data.
#@Paul Fogel,S. Stanley Young,Douglas M. Hawkins,Nathalie Ledirac
#t2007
#cBioinformatics
#index766975
#% 
#!
  
#*Repseek, a tool to retrieve approximate repeats from large DNA sequences.
#@Guillaume Achaz,Frédéric Boyer,Eduardo P. C. Rocha,Alain Viari,Eric Coissac
#t2007
#cBioinformatics
#index766976
#% 
#!
  
#*A comparative genome approach to marker ordering.
#@Thomas Faraut,Simon de Givry,Patrick Chabrier,Thomas Derrien,Francis Galibert,Christophe Hitte,Thomas Schiex
#t2007
#cBioinformatics
#index766977
#% 
#!
  
#*Detecting protein dissimilarities in multiple alignments using Bayesian variable selection.
#@Sinae Kim,Jerry Tsai,Ioannis Kagiampakis,Patricia LiWang,Marina Vannucci
#t2007
#cBioinformatics
#index766978
#% 
#!
  
#*PEAKS: identification of regulatory motifs by their position in DNA sequences.
#@Nicolás Bellora,Domènec Farré,M. Mar Albà
#t2007
#cBioinformatics
#index766979
#% 
#!
  
#*DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs.
#@Young C. Song,Edward Kawas,Benjamin M. Good,Mark D. Wilkinson,Scott J. Tebbutt
#t2007
#cBioinformatics
#index766980
#% 
#!
  
#*Robustness analysis of the chemosensory system to perturbations in chemoattractant concentrations.
#@Pratap R. Patnaik
#t2007
#cBioinformatics
#index766981
#% 
#!
  
#*Analysis of promoter recognition problem in dinucleotide feature space.
#@T. Sobha Rani,S. Durga Bhavani,Raju S. Bapi
#t2007
#cBioinformatics
#index766982
#% 
#!
  
#*K-Fold: a tool for the prediction of the protein folding kinetic order and rate.
#@Emidio Capriotti,Rita Casadio
#t2007
#cBioinformatics
#index766983
#% 
#!
  
#*Family relationships: should consensus reign? - consensus clustering for protein families.
#@Macha Nikolski,David James Sherman
#t2007
#cBioinformatics
#index766984
#% 
#!
  
#*A distribution free summarization method for Affymetrix GeneChip arrays.
#@Zhongxue Chen,Monnie McGee,Qingzhong Liu,Richard H. Scheuermann
#t2007
#cBioinformatics
#index766985
#% 
#!
  
#*Protein-protein interaction site prediction based on conditional random fields.
#@Ming-Hui Li,Lei Lin,Xiaolong Wang,Tao Liu
#t2007
#cBioinformatics
#index766986
#% 
#!
  
#*A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy.
#@Annalisa Marsico,Dirk Labudde,K. Tanuj Sapra,Daniel J. Muller,Michael Schroeder
#t2007
#cBioinformatics
#index766987
#% 
#!
  
#*TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities.
#@Shengyin Gu,Iain Anderson,Victor Kunin,Michael J. Cipriano,Simon Minovitsky,Gunther H. Weber,Nina Amenta,Bernd Hamann,Inna Dubchak
#t2007
#cBioinformatics
#index766988
#% 
#!
  
#*Large scale genotype-phenotype correlation analysis based on phylogenetic trees.
#@Farhat Habib,Andrew D. Johnson,Ralf Bundschuh,Daniel Janies
#t2007
#cBioinformatics
#index766989
#% 
#!
  
#*Using GOstats to test gene lists for GO term association.
#@Seth Falcon,Robert Gentleman
#t2007
#cBioinformatics
#index766990
#% 
#!
  
#*The discovery of transcriptional modules by a two-stage matrix decomposition approach.
#@Huai Li,Yu Sun,Ming Zhan
#t2007
#cBioinformatics
#index766991
#% 
#!
  
#*Enabling high-throughput data management for systems biology: The Bioinformatics Resource Manager.
#@Anuj R. Shah,Mudita Singhal,Kyle R. Klicker,Eric G. Stephan,H. Steven Wiley,Katrina M. Waters
#t2007
#cBioinformatics
#index766992
#% 
#!
  
#*Automatic recognition and annotation of gene expression patterns of fly embryos.
#@Jie Zhou,Hanchuan Peng
#t2007
#cBioinformatics
#index766993
#% 
#!
  
#*ADP_EM: fast exhaustive multi-resolution docking for high-throughput coverage.
#@José Ignacio Garzón,Julio A. Kovacs,Ruben Abagyan,Pablo Chacón
#t2007
#cBioinformatics
#index766994
#% 
#!
  
#*Genomic sweeping for hypermethylated genes.
#@Liang Goh,Susan K. Murphy,Sayan Muhkerjee,Terrence S. Furey
#t2007
#cBioinformatics
#index766995
#% 
#!
  
#*DP-Bind: a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins.
#@Seungwoo Hwang,Zhenkun Gou,Igor B. Kuznetsov
#t2007
#cBioinformatics
#index766996
#% 
#!
  
#*Segmentation and intensity estimation of microarray images using a gamma-t mixture model.
#@Jangsun Baek,Young Sook Son,Geoffrey J. McLachlan
#t2007
#cBioinformatics
#index766997
#% 
#!
  
#*A 3D pattern matching algorithm for DNA sequences.
#@Joan Hérisson,Guillaume Payen,Rachid Gherbi
#t2007
#cBioinformatics
#index766998
#% 
#!
  
#*Markers improve clustering of CGH data.
#@Jun Liu,Sanjay Ranka,Tamer Kahveci
#t2007
#cBioinformatics
#index766999
#% 
#!
  
#*In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists.
#@Yvan Saeys,Pierre Rouzé,Yves Van de Peer
#t2007
#cBioinformatics
#index767000
#% 
#!
  
#*Assessment of the probabilities for evolutionary structural changes in protein folds.
#@Juris Viksna,David Gilbert
#t2007
#cBioinformatics
#index767001
#% 
#!
  
#*Dynamic exploration and editing of KEGG pathway diagrams.
#@Christian Klukas,Falk Schreiber
#t2007
#cBioinformatics
#index767002
#% 
#!
  
#*Boolean dynamics of genetic regulatory networks inferred from microarray time series data.
#@Shawn Martin,Zhaoduo Zhang,Anthony Martino,Jean-Loup Faulon
#t2007
#cBioinformatics
#index767003
#% 
#!
  
#*CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data.
#@Charles Girardot,Oleg Sklyar,Sophie Grosz,Wolfgang Huber,Eileen E. M. Furlong
#t2007
#cBioinformatics
#index767004
#% 
#!
  
#*GGtools: analysis of genetics of gene expression in bioconductor.
#@Vincent J. Carey,Martin Morgan,Seth Falcon,Ross Lazarus,Robert Gentleman
#t2007
#cBioinformatics
#index767005
#% 
#!
  
#*Quick calculation for sample size while controlling false discovery rate with application to microarray analysis.
#@Peng Liu,J. T. Gene Hwang
#t2007
#cBioinformatics
#index767006
#% 
#!
  
#*Accurate automated clustering of two-dimensional data for single-nucleotide polymorphism genotyping by a combination of clustering methods: evaluation by large-scale real data.
#@Shuichi Takitoh,Shogo Fujii,Yoichi Mase,Junichi Takasaki,Toshimasa Yamazaki,Yozo Ohnishi,Masao Yanagisawa,Yusuke Nakamura,Naoyuki Kamatani
#t2007
#cBioinformatics
#index767007
#% 
#!
  
#*Enrichment or depletion of a GO category within a class of genes: which test?
#@Isabelle Rivals,Léon Personnaz,Lieng Taing,Marie-Claude Potier
#t2007
#cBioinformatics
#index767008
#% 
#!
  
#*identification of putative metal binding motifs.
#@Richard Thilakaraj,Krishnan Raghunathan,Sharmila Anishetty,Pennathur Gautam
#t2007
#cBioinformatics
#index767009
#% 
#!
  
#*cBrother: relaxing parental tree assumptions for Bayesian recombination detection.
#@Fang Fang,Jing Ding,Vladimir N. Minin,Marc A. Suchard,Karin S. Dorman
#t2007
#cBioinformatics
#index767010
#% 
#!
  
#*NetMatch: a Cytoscape plugin for searching biological networks.
#@Alfredo Ferro,Rosalba Giugno,Giuseppe Pigola,Alfredo Pulvirenti,Dmitry Skripin,G. D. Bader,Dennis Shasha
#t2007
#cBioinformatics
#index767011
#% 
#!
  
#*Biskit - A software platform for structural bioinformatics.
#@Raik Grünberg,Michael Nilges,Johan Leckner
#t2007
#cBioinformatics
#index767012
#% 
#!
  
#*Computing exact -values for DNA motifs.
#@Jing Zhang,Bo Jiang,Ming Li,John Tromp,Xuegong Zhang,Michael Q. Zhang
#t2007
#cBioinformatics
#index767013
#% 
#!
  
#*OmicBrowse: a browser of multidimensional omics annotations.
#@Tetsuro Toyoda,Yoshiki Mochizuki,Keith Player,Naohiko Heida,Norio Kobayashi,Yoshiyuki Sakaki
#t2007
#cBioinformatics
#index767014
#% 
#!
  
#*Causality and pathway search in microarray time series experiment.
#@Nitai D. Mukhopadhyay,Snigdhansu Chatterjee
#t2007
#cBioinformatics
#index767015
#% 
#!
  
#*OMWSA: detection of DNA repeats using moving window spectral analysis.
#@Liping Du,Hongxia Zhou,Hong Yan
#t2007
#cBioinformatics
#index767016
#% 
#!
  
#*Comparison of human protein-protein interaction maps.
#@Matthias E. Futschik,Gautam Chaurasia,Hanspeter Herzel
#t2007
#cBioinformatics
#index767017
#% 
#!
  
#*A faster circular binary segmentation algorithm for the analysis of array CGH data.
#@E. S. Venkatraman,Adam B. Olshen
#t2007
#cBioinformatics
#index767018
#% 
#!
  
#*R/qtlbim: QTL with Bayesian Interval Mapping in experimental crosses.
#@Brian S. Yandell,Tapan Mehta,Samprit Banerjee,Daniel Shriner,Ramprasad Venkataraman,Jee Young Moon,W. Whipple Neely,Hao Wu,Randy von Smith,Nengjun Yi
#t2007
#cBioinformatics
#index767019
#% 
#!
  
#*SMotif: a server for structural motifs in proteins.
#@Ganesan Pugalenthi,Ponnuthurai N. Suganthan,Ramanathan Sowdhamini,Saikat Chakrabarti
#t2007
#cBioinformatics
#index767020
#% 
#!
  
#*Mosclust: a software library for discovering significant structures in bio-molecular data.
#@Giorgio Valentini
#t2007
#cBioinformatics
#index767021
#% 
#!
  
#*LFM-Pro: a tool for detecting significant local structural sites in proteins.
#@Ahmet Sacan,Ozgur Ozturk,Hakan Ferhatosmanoglu,Yusu Wang
#t2007
#cBioinformatics
#index767022
#% 
#!
  
#*Structure-based evaluation of predictions of protein-protein interactions using Comparative Docking.
#@Simon J. Cockell,Baldo Oliva,Richard M. Jackson
#t2007
#cBioinformatics
#index767023
#% 
#!
  
#*Quaternionic periodicity transform: an algebraic solution to the tandem repeat detection problem.
#@Andrzej K. Brodzik
#t2007
#cBioinformatics
#index767024
#% 
#!
  
#*SatDNA Analyzer: a computing tool for satellite-DNA evolutionary analysis.
#@Rafael Navajas-Pérez,Cristina Rubio-Escudero,José Luis Aznarte,Manuel Ruiz Rejón,Manuel A. Garrido-Ramos
#t2007
#cBioinformatics
#index767025
#% 
#!
  
#*Inherent limitations in protein-protein docking procedures.
#@Noga Kowalsman,Miriam Eisenstein
#t2007
#cBioinformatics
#index767026
#% 
#!
  
#*DFprot: a webtool for predicting local chain deformability.
#@José Ignacio Garzón,Julio A. Kovacs,Ruben Abagyan,Pablo Chacón
#t2007
#cBioinformatics
#index767027
#% 
#!
  
#*COPYCAT : cophylogenetic analysis tool.
#@Jan P. Meier-Kolthoff,Alexander F. Auch,Daniel H. Huson,Markus Göker
#t2007
#cBioinformatics
#index767028
#% 
#!
  
#*Software package for automatic microarray image analysis (MAIA).
#@Eugene Novikov,Emmanuel Barillot
#t2007
#cBioinformatics
#index767029
#% 
#!
  
#*A new versatile database created for geneticists and breeders to link molecular and phenotypic data in perennial crops: the .
#@A. Antofie,M. Lateur,R. Oger,A. Patocchi,C. E. Durel,W. E. Van de Weg
#t2007
#cBioinformatics
#index767030
#% 
#!
  
#*: R classes and methods for SNP array data.
#@Robert B. Scharpf,Jason C. Ting,Jonathan Pevsner,Ingo Ruczinski
#t2007
#cBioinformatics
#index767031
#% 
#!
  
#*BioNetBuilder: automatic integration of biological networks.
#@Iliana Avila-Campillo,Kevin Drew,John Lin,David J. Reiss,Richard Bonneau
#t2007
#cBioinformatics
#index767032
#% 
#!
  
#*Assembling millions of short DNA sequences using SSAKE.
#@René L. Warren,Granger G. Sutton,Steven J. M. Jones,Robert A. Holt
#t2007
#cBioinformatics
#index767033
#% 
#!
  
#*Speeding up tandem mass spectrometry database search: metric embeddings and fast near neighbor search.
#@Debojyoti Dutta,Ting Chen
#t2007
#cBioinformatics
#index767034
#% 
#!
  
#*The ESID Online Database network.
#@D. Guzman,D. Veit,V. Knerr,G. Kindle,B. Gathmann,A. M. Eades-Perner,B. Grimbacher
#t2007
#cBioinformatics
#index767035
#% 
#!
  
#*PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences.
#@Kazutaka Katoh,Hiroyuki Toh
#t2007
#cBioinformatics
#index767036
#% 
#!
  
#*snp.plotter: an R-based SNP/haplotype association and linkage disequilibrium plotting package.
#@Augustin Luna,Kristin K. Nicodemus
#t2007
#cBioinformatics
#index767037
#% 
#!
  
#*Robust prediction of consensus secondary structures using averaged base pairing probability matrices.
#@Hisanori Kiryu,Taishin Kin,Kiyoshi Asai
#t2007
#cBioinformatics
#index767038
#% 
#!
  
#*GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring.
#@Olivier Garcia,Cosmin Saveanu,Melissa S. Cline,Micheline Fromont-Racine,Alain Jacquier,Benno Schwikowski,Tero Aittokallio
#t2007
#cBioinformatics
#index767039
#% 
#!
  
#*Functional evaluation of domain-domain interactions and human protein interaction networks.
#@Andreas Schlicker,Carola Huthmacher,Fidel Ramírez,Thomas Lengauer,Mario Albrecht
#t2007
#cBioinformatics
#index767040
#% 
#!
  
#*NvMap: automated analysis of NMR chemical shift perturbation data.
#@Lisa Fukui,Yuan Chen
#t2007
#cBioinformatics
#index767041
#% 
#!
  
#*Peak selection from MALDI-TOF mass spectra using ant colony optimization.
#@Habtom W. Ressom,Rency S. Varghese,Steven K. Drake,Glen L. Hortin,Mohamed Abdel-Hamid,Christopher A. Loffredo,Radoslav Goldman
#t2007
#cBioinformatics
#index767042
#% 
#!
  
#*ARIA2: Automated NOE assignment and data integration in NMR structure calculation.
#@Wolfgang Rieping,Michael Habeck,Benjamin Bardiaux,Aymeric Bernard,Therese E. Malliavin,Michael Nilges
#t2007
#cBioinformatics
#index767043
#% 
#!
  
#*Mapping the genetic architecture of complex traits in experimental populations.
#@Jian Yang,Jun Zhu,Robert W. Williams
#t2007
#cBioinformatics
#index767044
#% 
#!
  
#*I-Ssp6803I: the first homing endonuclease from the PD-(D/E)XK superfamily exhibits an unusual mode of DNA recognition.
#@Jerzy Orlowski,Michal Boniecki,Janusz M. Bujnicki
#t2007
#cBioinformatics
#index767045
#% 
#!
  
#*URec: a system for unrooted reconciliation.
#@Pawel Górecki,Jerzy Tiuryn
#t2007
#cBioinformatics
#index767046
#% 
#!
  
#*Qualitatively modelling and analysing genetic regulatory networks: a Petri net approach.
#@L. Jason Steggles,Richard Banks,Oliver Shaw,Anil Wipat
#t2007
#cBioinformatics
#index767047
#% 
#!
  
#*AphidBase: a database for aphid genomic resources.
#@Jean-Pierre Gauthier,Fabrice Legeai,Alain Zasadzinski,Claude Rispe,Denis Tagu
#t2007
#cBioinformatics
#index767048
#% 
#!
  
#*Parameter estimation using Simulated Annealing for S-system models of biochemical networks.
#@Orland R. Gonzalez,Christoph Küper,Kirsten Jung,Prospero C. Naval Jr.,Eduardo Mendoza
#t2007
#cBioinformatics
#index767049
#% 
#!
  
#*BioWeka - extending the Weka framework for bioinformatics.
#@Jan E. Gewehr,Martin Szugat,Ralf Zimmer
#t2007
#cBioinformatics
#index767050
#% 
#!
  
#*MotifScorer: using a compendium of microarrays to identify regulatory motifs.
#@Matteo Brilli,Renato Fani,Pietro Liò
#t2007
#cBioinformatics
#index767051
#% 
#!
  
#*AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps.
#@Thomas Derrien,Catherine André,Francis Galibert,Christophe Hitte
#t2007
#cBioinformatics
#index767052
#% 
#!
  
#*PhyloGena - a user-friendly system for automated phylogenetic annotation of unknown sequences.
#@Kristian Hanekamp,Uta Bohnebeck,Bánk Beszteri,Klaus Valentin
#t2007
#cBioinformatics
#index767053
#% 
#!
  
#*An ensemble approach to microarray data-based gene prioritization after missing value imputation.
#@Dong Hua,Yinglei Lai
#t2007
#cBioinformatics
#index767054
#% 
#!
  
#*On the derivation of propensity scales for predicting exposed transmembrane residues of helical membrane proteins.
#@Yungki Park,Volkhard Helms
#t2007
#cBioinformatics
#index767055
#% 
#!
  
#*Oligonucleotide microarray identification of strains using support vector machines.
#@Michael V. Doran,Daniela Stan Raicu,Jacob D. Furst,Raffaella Settimi,Matthew Schipma,Darrell P. Chandler
#t2007
#cBioinformatics
#index767056
#% 
#!
  
#*A simple shape characteristic of protein-protein recognition.
#@George Nicola,Ilya A. Vakser
#t2007
#cBioinformatics
#index767057
#% 
#!
  
#*QSCOP - SCOP quantified by structural relationships.
#@Stefan J. Suhrer,Markus Wiederstein,Manfred J. Sippl
#t2007
#cBioinformatics
#index767058
#% 
#!
  
#*NetPhosYeast: prediction of protein phosphorylation sites in yeast.
#@Christian R. Ingrell,Martin L. Miller,Ole N. Jensen,Nikolaj Blom
#t2007
#cBioinformatics
#index767059
#% 
#!
  
#*SCOOP: a simple method for identification of novel protein superfamily relationships.
#@Alex Bateman,Robert D. Finn
#t2007
#cBioinformatics
#index767060
#% 
#!
  
#*CGHcall: calling aberrations for array CGH tumor profiles.
#@Mark A. van de Wiel,Kyung In Kim,Sjoerd J. Vosse,Wessel N. van Wieringen,Saskia M. Wilting,Bauke Ylstra
#t2007
#cBioinformatics
#index767061
#% 
#!
  
#*Extensions to gene set enrichment.
#@Zhen Jiang,Robert Gentleman
#t2007
#cBioinformatics
#index767062
#% 
#!
  
#*A new protein-protein docking scoring function based on interface residue properties.
#@Julie Bernauer,Jérôme Azé,Joël Janin,Anne Poupon
#t2007
#cBioinformatics
#index767063
#% 
#!
  
#*Assessment of phylogenomic and orthology approaches for phylogenetic inference.
#@Bas E. Dutilh,Vera van Noort,René T. J. M. van der Heijden,T. Boekhout,Berend Snel,Martijn A. Huynen
#t2007
#cBioinformatics
#index767064
#% 
#!
  
#*SNPassoc: an R package to perform whole genome association studies.
#@Juan R. González,Lluís Armengol,Xavier Solé,Elisabet Guinó,Josep M. Mercader,Xavier Estivill,Víctor Moreno
#t2007
#cBioinformatics
#index767065
#% 
#!
  
#*Bayesian-based selection of metabolic objective functions.
#@Andrea L. Knorr,Rishi Jain,Ranjan Srivastava
#t2007
#cBioinformatics
#index767066
#% 
#!
  
#*Deleterious SNP prediction: be mindful of your training data!
#@Matthew A. Care,Chris J. Needham,Andrew J. Bulpitt,David R. Westhead
#t2007
#cBioinformatics
#index767067
#% 
#!
  
#*PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
#@Jimin Pei,Nick V. Grishin
#t2007
#cBioinformatics
#index767068
#% 
#!
  
#*On the relationship between sequence and structure similarities in proteomics.
#@Evgeny B. Krissinel
#t2007
#cBioinformatics
#index767069
#% 
#!
  
#*AllerTool: a web server for predicting allergenicity and allergic cross-reactivity in proteins.
#@Zong Hong Zhang,Judice L. Y. Koh,Guanglan Zhang,Khar Heng Choo,Martti T. Tammi,Joo Chuan Tong
#t2007
#cBioinformatics
#index767070
#% 
#!
  
#*Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data.
#@Pedro A. F. Galante,Jeff Trimarchi,Constance L. Cepko,Sandro J. de Souza,Lucila Ohno-Machado,Winston Patrick Kuo
#t2007
#cBioinformatics
#index767071
#% 
#!
  
#*An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences.
#@Kai Ye,Walter A. Kosters,Adriaan P. IJzerman
#t2007
#cBioinformatics
#index767072
#% 
#!
  
#*Functional genomics via multiscale analysis: application to gene expression and ChIP-on-chip data.
#@Gilad Lerman,Joseph McQuown,Alexandre Blais,Brian D. Dynlacht,Guangliang Chen,Bud Mishra
#t2007
#cBioinformatics
#index767073
#% 
#!
  
#*RelEx - Relation extraction using dependency parse trees.
#@Katrin Fundel,Robert Küffner,Ralf Zimmer
#t2007
#cBioinformatics
#index767074
#% 
#!
  
#*Indelign: a probabilistic framework for annotation of insertions and deletions in a multiple alignment.
#@Jaebum Kim,Saurabh Sinha
#t2007
#cBioinformatics
#index767075
#% 
#!
  
#*msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots.
#@Garrett Hellenthal,Matthew Stephens
#t2007
#cBioinformatics
#index767076
#% 
#!
  
#*SBaddon: high performance simulation for the Systems Biology Toolbox for MATLAB.
#@Henning Schmidt
#t2007
#cBioinformatics
#index767077
#% 
#!
  
#*Improving the accuracy of transmembrane protein topology prediction using evolutionary information.
#@David T. Jones
#t2007
#cBioinformatics
#index767078
#% 
#!
  
#*The Treeterbi and Parallel Treeterbi algorithms: efficient, optimal decoding for ordinary, generalized and pair HMMs.
#@Evan Keibler,Manimozhiyan Arumugam,Michael R. Brent
#t2007
#cBioinformatics
#index767079
#% 
#!
  
#*Visualization of genomic aberrations using Affymetrix SNP arrays.
#@André Müller,Karlheinz Holzmann,Hans A. Kestler
#t2007
#cBioinformatics
#index767080
#% 
#!
  
#*A simulation test bed for hypotheses of genome evolution.
#@Robert G. Beiko,Robert L. Charlebois
#t2007
#cBioinformatics
#index767081
#% 
#!
  
#*Hardware acceleration of processing of mass spectrometric data for proteomics.
#@István A. Bogdán,Daniel Coca,Jenny Rivers,Robert J. Beynon
#t2007
#cBioinformatics
#index767082
#% 
#!
  
#*A predictive model for identifying proteins by a single peptide match.
#@Roger Higdon,Eugene Kolker
#t2007
#cBioinformatics
#index767083
#% 
#!
  
#*Compressed suffix tree - a basis for genome-scale sequence analysis.
#@Niko Välimäki,Wolfgang Gerlach,Kashyap Dixit,Veli Mäkinen
#t2007
#cBioinformatics
#index767084
#% 
#!
  
#*Genomic characterization of multiple clinical phenotypes of cancer using multivariate linear regression models.
#@Shigeyuki Matsui,Masaaki Ito,Hiroyuki Nishiyama,Hajime Uno,Hirokazu Kotani,Jun Watanabe,Parry Guilford,Anthony Reeve,Masanori Fukushima,Osamu Ogawa
#t2007
#cBioinformatics
#index767085
#% 
#!
  
#*SGN Sim, a Stochastic Genetic Networks Simulator.
#@Andre S. Ribeiro,Jason Lloyd-Price
#t2007
#cBioinformatics
#index767086
#% 
#!
  
#*A hidden Markov model-based approach for identifying timing differences in gene expression under different experimental factors.
#@Takashi Yoneya,Hiroshi Mamitsuka
#t2007
#cBioinformatics
#index767087
#% 
#!
  
#*Integrating transcription factor binding site information with gene expression datasets.
#@Ian B. Jeffery,Stephen F. Madden,Paul A. McGettigan,Guy Perrière,Aedín C. Culhane,Desmond G. Higgins
#t2007
#cBioinformatics
#index767088
#% 
#!
  
#*The automation of Nested Clade Phylogeographic Analysis.
#@Mahesh Panchal
#t2007
#cBioinformatics
#index767089
#% 
#!
  
#*Molecular basis for specificity in the druggable kinome: sequence-based analysis.
#@Jianping Chen,Xi Zhang,Ariel Fernández
#t2007
#cBioinformatics
#index767090
#% 
#!
  
#*Prophet, a web-based tool for class prediction using microarray data.
#@Ignacio Medina,David Montaner,Joaquín Tárraga,Joaquín Dopazo
#t2007
#cBioinformatics
#index767091
#% 
#!
  
#*MinSet: a general approach to derive maximally representative database subsets by using fragment dictionaries and its application to the SCOP database.
#@Alessandro Pandini,Laura Bonati,Franca Fraternali,Jens Kleinjung
#t2007
#cBioinformatics
#index767092
#% 
#!
  
#*Inferring pairwise regulatory relationships from multiple time series datasets.
#@Yanxin Shi,Tom Mitchell,Ziv Bar-Joseph
#t2007
#cBioinformatics
#index767093
#% 
#!
  
#*Mclip: motif detection based on cliques of gapped local profile-to-profile alignments.
#@Tancred Frickey,Georg Weiller
#t2007
#cBioinformatics
#index767094
#% 
#!
  
#*Gene expression network analysis and applications to immunology.
#@Serban Nacu,Rebecca Critchley-Thorne,Peter Lee,Susan Holmes
#t2007
#cBioinformatics
#index767095
#% 
#!
  
#*SNP2NMD: A database of human single nucleotide polymorphisms causing nonsense-mediated mRNA decay.
#@Areum Han,Woo-Yeon Kim,Seong-Min Park
#t2007
#cBioinformatics
#index767096
#% 
#!
  
#*Modular organization of protein interaction networks.
#@Feng Luo,Yunfeng Yang,Chin-Fu Chen,Roger Chang,Jizhong Zhou,Richard H. Scheuermann
#t2007
#cBioinformatics
#index767097
#% 
#!
  
#*An RNA conformational shift in recent H5N1 influenza A viruses.
#@Alexander P. Gultyaev,Hans A. Heus,René C. L. Olsthoorn
#t2007
#cBioinformatics
#index767098
#% 
#!
  
#*Modeling sequence-sequence interactions for drug response.
#@Min Lin,Hongying Li,Wei Hou,Julie A. Johnson,Rongling Wu
#t2007
#cBioinformatics
#index767099
#% 
#!
  
#*COBALT: constraint-based alignment tool for multiple protein sequences.
#@Jason S. Papadopoulos,Richa Agarwala
#t2007
#cBioinformatics
#index767100
#% 
#!
  
#*Gepard: a rapid and sensitive tool for creating dotplots on genome scale.
#@Jan Krumsiek,Roland Arnold,Thomas Rattei
#t2007
#cBioinformatics
#index767101
#% 
#!
  
#*Enhancements and modifications of primer design program Primer3.
#@Triinu Koressaar,Maido Remm
#t2007
#cBioinformatics
#index767102
#% 
#!
  
#*Semantic Web Service provision: a realistic framework for Bioinformatics programmers.
#@Paul M. K. Gordon,Quang Trinh,Christoph W. Sensen
#t2007
#cBioinformatics
#index767103
#% 
#!
  
#*pcaMethods - a bioconductor package providing PCA methods for incomplete data.
#@Wolfram Stacklies,Henning Redestig,Matthias Scholz,Dirk Walther,Joachim Selbig
#t2007
#cBioinformatics
#index767104
#% 
#!
  
#*Gene symbol disambiguation using knowledge-based profiles.
#@Hua Xu,Jung-Wei Fan,George Hripcsak,Eneida A. Mendonça,Marianthi Markatou,Carol Friedman
#t2007
#cBioinformatics
#index767105
#% 
#!
  
#*Analyzing gene expression data in terms of gene sets: methodological issues.
#@Jelle J. Goeman,Peter Bühlmann
#t2007
#cBioinformatics
#index767106
#% 
#!
  
#*A computational system to select candidate genes for complex human traits.
#@Kyle J. Gaulton,Karen L. Mohlke,Todd J. Vision
#t2007
#cBioinformatics
#index767107
#% 
#!
  
#*Microarray blob-defect removal improves array analysis.
#@Jun S. Song,Kaveh Maghsoudi,Wei Li,Edward Fox,John Quackenbush,X. Shirley Liu
#t2007
#cBioinformatics
#index767108
#% 
#!
  
#*peptide sequencing using ion peak intensity and amino acid cleavage intensity ratio.
#@Mitsuhiro Kanazawa,Hisae Anyoji,Atsushi Ogiwara,Umpei Nagashima
#t2007
#cBioinformatics
#index767109
#% 
#!
  
#*IMEx: Imperfect Microsatellite Extractor.
#@Suresh B. Mudunuri,Hampapathalu A. Nagarajaram
#t2007
#cBioinformatics
#index767110
#% 
#!
  
#*POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties.
#@Chun-Wei Tung,Shinn-Ying Ho
#t2007
#cBioinformatics
#index767111
#% 
#!
  
#*Cyclone: java-based querying and computing with Pathway/Genome databases.
#@François Le Fèvre,Serge Smidtas,Vincent Schächter
#t2007
#cBioinformatics
#index767112
#% 
#!
  
#*GAPWM: a genetic algorithm method for optimizing a position weight matrix.
#@Leping Li,Yu Liang,Robert L. Bass
#t2007
#cBioinformatics
#index767113
#% 
#!
  
#*iPTREE-STAB: interpretable decision tree based method for predicting protein stability changes upon mutations.
#@Liang-Tsung Huang,M. Michael Gromiha,Shinn-Ying Ho
#t2007
#cBioinformatics
#index767114
#% 
#!
  
#*Mediante: a web-based microarray data manager.
#@Kevin Le Brigand,Pascal Barbry
#t2007
#cBioinformatics
#index767115
#% 
#!
  
#*The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.
#@Kevin Y. Yip,Haiyuan Yu,Philip M. Kim,Martin H. Schultz,Mark Gerstein
#t2007
#cBioinformatics
#index767116
#% 
#!
  
#*Analyzing microarray data using CLANS.
#@Tancred Frickey,Georg Weiller
#t2007
#cBioinformatics
#index767117
#% 
#!
  
#*Identifying clusters of functionally related genes in genomes.
#@Gangman Yi,Sing-Hoi Sze,Michael R. Thon
#t2007
#cBioinformatics
#index767118
#% 
#!
  
#*Position dependencies in transcription factor binding sites.
#@Andrija Tomovic,Edward J. Oakeley
#t2007
#cBioinformatics
#index767119
#% 
#!
  
#*Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.
#@Aaron Barsky,Jennifer L. Gardy,Robert E. W. Hancock,Tamara Munzner
#t2007
#cBioinformatics
#index767120
#% 
#!
  
#*SPACER: identification of -regulatory elements with non-contiguous critical residues.
#@Arijit Chakravarty,Jonathan M. Carlson,Radhika S. Khetani,Charles E. DeZiel,Robert H. Gross
#t2007
#cBioinformatics
#index767121
#% 
#!
  
#*Regression analysis and modelling of data acquisition for SELDI-TOF mass spectrometry.
#@Martin Sköld,Tobias Rydén,Viktoria Samuelsson,Charlotte Bratt,Lars Ekblad,Håkan Olsson,Bo Baldetorp
#t2007
#cBioinformatics
#index767122
#% 
#!
  
#*Group SCAD regression analysis for microarray time course gene expression data.
#@Lifeng Wang,Guang Chen,Hongzhe Li
#t2007
#cBioinformatics
#index767123
#% 
#!
  
#*A mixture model approach to the tests of concordance and discordance between two large-scale experiments with two-sample groups.
#@Yinglei Lai,Bao-ling Adam,Robert Podolsky,Jin-Xiong She
#t2007
#cBioinformatics
#index767124
#% 
#!
  
#*Disease-specific genomic analysis: identifying the signature of pathologic biology.
#@Monica Nicolau,Robert Tibshirani,Anne-Lise Børresen-Dale,Stefanie S. Jeffrey
#t2007
#cBioinformatics
#index767125
#% 
#!
  
#*Simulating psoriasis by altering transit amplifying cells.
#@Niels Grabe,Karsten Neuber
#t2007
#cBioinformatics
#index767126
#% 
#!
  
#*rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control.
#@Alejandro A. Schäffer,Edward Stallknecht Rice,William Cook,Richa Agarwala
#t2007
#cBioinformatics
#index767127
#% 
#!
  
#*Continuous-index hidden Markov modelling of array CGH copy number data.
#@Susann Stjernqvist,Tobias Rydén,Martin Sköld,Johan Staaf
#t2007
#cBioinformatics
#index767128
#% 
#!
  
#*A new method to measure the semantic similarity of GO terms.
#@James Zijun Wang,Zhidian Du,Rapeeporn Payattakool,Philip S. Yu,Chin-Fu Chen
#t2007
#cBioinformatics
#index767129
#% 
#!
  
#*Multiple structural alignment and clustering of RNA sequences.
#@Elfar Torarinsson,Jakob Hull Havgaard,Jan Gorodkin
#t2007
#cBioinformatics
#index767130
#% 
#!
  
#*SwS: a solvation web service for nucleic acids.
#@Pascal Auffinger,Yaser Hashem
#t2007
#cBioinformatics
#index767131
#% 
#!
  
#*Comparative annotation of viral genomes with non-conserved gene structure.
#@Saskia de Groot,Thomas Mailund,Jotun Hein
#t2007
#cBioinformatics
#index767132
#% 
#!
  
#*DPTF: a database of poplar transcription factors.
#@Qihui Zhu,Anyuan Guo,Ge Gao,Yingfu Zhong,Meng Xu,Minren Huang,Jingchu Luo
#t2007
#cBioinformatics
#index767133
#% 
#!
  
#*ABCGrid: Application for Bioinformatics Computing Grid.
#@Ying Sun,Shuqi Zhao,Huashan Yu,Ge Gao,Jingchu Luo
#t2007
#cBioinformatics
#index767134
#% 
#!
  
#*FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes.
#@Evert-Jan Blom,Dinne W. J. Bosman,Sacha A. F. T. van Hijum,Rainer Breitling,Lars Tijsma,Remko Silvis,Jos B. T. M. Roerdink,Oscar P. Kuipers
#t2007
#cBioinformatics
#index767135
#% 
#!
  
#*Metabolic systems cost-benefit analysis for interpreting network structure and regulation.
#@Ross P. Carlson
#t2007
#cBioinformatics
#index767136
#% 
#!
  
#*Glycan classification with tree kernels.
#@Yoshihiro Yamanishi,Francis Bach,Jean-Philippe Vert
#t2007
#cBioinformatics
#index767137
#% 
#!
  
#*AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.
#@Jan E. Gewehr,Volker Hintermair,Ralf Zimmer
#t2007
#cBioinformatics
#index767138
#% 
#!
  
#*A multi-stage approach to clustering and imputation of gene expression profiles.
#@Dorothy S. V. Wong,Frederick K. Wong,Graham R. Wood
#t2007
#cBioinformatics
#index767139
#% 
#!
  
#*ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors.
#@Dmitri A. Papatsenko
#t2007
#cBioinformatics
#index767140
#% 
#!
  
#*A fast and flexible approach to oligonucleotide probe design for genomes and gene families.
#@Shengzhong Feng,Elisabeth R. M. Tillier
#t2007
#cBioinformatics
#index767141
#% 
#!
  
#*Domain-enhanced analysis of microarray data using GO annotations.
#@Jiajun Liu,Jacqueline M. Hughes-Oliver,J. Alan Menius Jr.
#t2007
#cBioinformatics
#index767142
#% 
#!
  
#*Ngila: global pairwise alignments with logarithmic and affine gap costs.
#@Reed A. Cartwright
#t2007
#cBioinformatics
#index767143
#% 
#!
  
#*Improved centroids estimation for the nearest shrunken centroid classifier.
#@Sijian Wang,Ji Zhu
#t2007
#cBioinformatics
#index767144
#% 
#!
  
#*SBML export interface for the systems biology toolbox for MATLAB.
#@Henning Schmidt,Gunnar Drews,Julio Vera,Olaf Wolkenhauer
#t2007
#cBioinformatics
#index767145
#% 
#!
  
#*AMPer: a database and an automated discovery tool for antimicrobial peptides.
#@Christopher D. Fjell,Robert E. W. Hancock,Artem Cherkasov
#t2007
#cBioinformatics
#index767146
#% 
#!
  
#*CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.
#@Genis Parra,Keith Bradnam,Ian Korf
#t2007
#cBioinformatics
#index767147
#% 
#!
  
#*MSVM-RFE: extensions of SVM-RFE for multiclass gene selection on DNA microarray data.
#@Xin Zhou,David P. Tuck
#t2007
#cBioinformatics
#index767148
#% 
#!
  
#*BioGuideSRS: querying multiple sources with a user-centric perspective.
#@Sarah Cohen Boulakia,Olivier Biton,Susan B. Davidson,Christine Froidevaux
#t2007
#cBioinformatics
#index767149
#% 
#!
  
#*A structural alignment kernel for protein structures.
#@Jian Qiu,Martial Hue,Asa Ben-Hur,Jean-Philippe Vert,William Stafford Noble
#t2007
#cBioinformatics
#index767150
#% 
#!
  
#*A new JAVA interface implementation of THESIAS: testing haplotype effects in association studies.
#@D. A. Tregouet,V. Garelle
#t2007
#cBioinformatics
#index767151
#% 
#!
  
#*Codelink: an R package for analysis of GE healthcare gene expression bioarrays.
#@Diego Diez,Rebeca Alvarez,Ana Dopazo
#t2007
#cBioinformatics
#index767152
#% 
#!
  
#*HomologMiner: looking for homologous genomic groups in whole genomes.
#@Minmei Hou,Piotr Berman,Chih-Hao Hsu,Robert S. Harris
#t2007
#cBioinformatics
#index767153
#% 
#!
  
#*Metabolic network properties help assign weights to elementary modes to understand physiological flux distributions.
#@Qingzhao Wang,Yudi Yang,Hongwu Ma,Xue-Ming Zhao
#t2007
#cBioinformatics
#index767154
#% 
#!
  
#*Using DNA microarrays to study gene expression in closely related species.
#@Alicia Oshlack,Adrien E. Chabot,Gordon K. Smyth,Yoav Gilad
#t2007
#cBioinformatics
#index767155
#% 
#!
  
#*GenABEL: an R library for genome-wide association analysis.
#@Yurii S. Aulchenko,Stephan Ripke,Aaron Isaacs,Cornelia M. van Duijn
#t2007
#cBioinformatics
#index767156
#% 
#!
  
#*NucPred - Predicting nuclear localization of proteins.
#@Markus Brameier,Andrea Krings,Robert M. MacCallum
#t2007
#cBioinformatics
#index767157
#% 
#!
  
#*Pooling mRNA in microarray experiments and its effect on power.
#@Wuyan Zhang,Alicia Carriquiry,Dan Nettleton,Jack C. M. Dekkers
#t2007
#cBioinformatics
#index767158
#% 
#!
  
#*Maximum likelihood of phylogenetic networks.
#@Guohua Jin,Luay Nakhleh,Sagi Snir,Tamir Tuller
#t2007
#cBioinformatics
#index767159
#% 
#!
  
#*Assessing the need for sequence-based normalization in tiling microarray experiments.
#@Thomas E. Royce,Joel S. Rozowsky,Mark Gerstein
#t2007
#cBioinformatics
#index767160
#% 
#!
  
#*Improving metabolic flux estimation via evolutionary optimization for convex solution space.
#@Jiusheng Chen,Haoran Zheng,Haiyan Liu,Junqing Niu,Jianping Liu,Tie Shen,Bin Rui,Yunyu Shi
#t2007
#cBioinformatics
#index767161
#% 
#!
  
#*Phylogenetic exploration of bacterial genomic rearrangements.
#@Romain Fremez,Thomas Faraut,Gwennaele Fichant,Jérôme Gouzy,Yves Quentin
#t2007
#cBioinformatics
#index767162
#% 
#!
  
#*GoSh: a web-based database for goat and sheep EST sequences.
#@Andrea Caprera,Barbara Lazzari,Alessandra Stella,Ivan Merelli,Alexandre R. Caetano,Paola Mariani
#t2007
#cBioinformatics
#index767163
#% 
#!
  
#*Clustering by common friends finds locally significant proteins mediating modules.
#@Bill Andreopoulos,Aijun An,Xiaogang Wang,Michalis Faloutsos,Michael Schroeder
#t2007
#cBioinformatics
#index767164
#% 
#!
  
#*Local structural disorder imparts plasticity on linear motifs.
#@Mónika Fuxreiter,Peter Tompa,István Simon
#t2007
#cBioinformatics
#index767165
#% 
#!
  
#*The impact of function perturbations in Boolean networks.
#@Yufei Xiao,Edward R. Dougherty
#t2007
#cBioinformatics
#index767166
#% 
#!
  
#*Extending the pathway analysis framework with a test for transcriptional variance implicates novel pathway modulation during myogenic differentiation.
#@Daniel M. Kemp,N. R. Nirmala,Joseph D. Szustakowski
#t2007
#cBioinformatics
#index767167
#% 
#!
  
#*Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure.
#@Avril Coghlan,Richard Durbin
#t2007
#cBioinformatics
#index767168
#% 
#!
  
#*Discovery of microRNA-mRNA modules via population-based probabilistic learning.
#@Je-Gun Joung,Kyu Baek Hwang,Jin-Wu Nam,Soo-Jin Kim,Byoung-Tak Zhang
#t2007
#cBioinformatics
#index767169
#% 
#!
  
#*ProServer: a simple, extensible Perl DAS server.
#@Robert D. Finn,James W. Stalker,David K. Jackson,Eugene Kulesha,Jody Clements,Roger Pettett
#t2007
#cBioinformatics
#index767170
#% 
#!
  
#*Identifying the biologically relevant gene categories based on gene expression and biological data: an example on prostate cancer.
#@D. Huang,Tommy W. S. Chow
#t2007
#cBioinformatics
#index767171
#% 
#!
  
#*Andante: reducing side-chain rotamer search space during comparative modeling using environment-specific substitution probabilities.
#@Richard E. Smith,Simon C. Lovell,David F. Burke,Rinaldo W. Montalvão,Tom L. Blundell
#t2007
#cBioinformatics
#index767172
#% 
#!
  
#*Searching for three-dimensional secondary structural patterns in proteins with ProSMoS.
#@Shuoyong Shi,Yi Zhong,Indraneel Majumdar,S. Sri Krishna,Nick V. Grishin
#t2007
#cBioinformatics
#index767173
#% 
#!
  
#*Management, presentation and interpretation of genome scans using GSCANDB.
#@Martin Taylor,William Valdar,Ashish Kumar,Jonathan Flint,Richard Mott
#t2007
#cBioinformatics
#index767174
#% 
#!
  
#*MPP: a microarray-to-phylogeny pipeline for analysis of gene and marker content datasets.
#@Robert Davey,George Savva,Jo L. Dicks,Ian N. Roberts
#t2007
#cBioinformatics
#index767175
#% 
#!
  
#*SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data.
#@Hagit Shatkay,Annette Höglund,Scott Brady,Torsten Blum,Pierre Dönnes,Oliver Kohlbacher
#t2007
#cBioinformatics
#index767176
#% 
#!
  
#*From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle.
#@Ralf Steuer,Adriano Nunes Nesi,Alisdair R. Fernie,Thilo Gross,Bernd Blasius,Joachim Selbig
#t2007
#cBioinformatics
#index767177
#% 
#!
  
#*UniRef: comprehensive and non-redundant UniProt reference clusters.
#@Baris E. Suzek,Hongzhan Huang,Peter B. McGarvey,Raja Mazumder,Cathy H. Wu
#t2007
#cBioinformatics
#index767178
#% 
#!
  
#*IlluminaGUI: Graphical User Interface for analyzing gene expression data generated on the Illumina platform.
#@Joachim L. Schultze,Daniela Eggle
#t2007
#cBioinformatics
#index767179
#% 
#!
  
#*TOPD/FMTS: a new software to compare phylogenetic trees.
#@Pere Puigbò,Santiago Garcia-Vallvé,James O. McInerney
#t2007
#cBioinformatics
#index767180
#% 
#!
  
#*Crystallographic protein model-building on the web.
#@Kreshna Gopal,Erik McKee,Tod D. Romo,Reetal Pai,Jacob Smith,James C. Sacchettini,Thomas R. Ioerger
#t2007
#cBioinformatics
#index767181
#% 
#!
  
#*Sparse non-negative matrix factorizations via alternating non-negativity-constrained least squares for microarray data analysis.
#@Hyunsoo Kim,Haesun Park
#t2007
#cBioinformatics
#index767182
#% 
#!
  
#*Libaffy: software for processing Affymetrix(R) GeneChip(R) data.
#@Steven Eschrich,Andrew M. Hoerter
#t2007
#cBioinformatics
#index767183
#% 
#!
  
#*Finding new structural and sequence attributes to predict possible disease association of single amino acid polymorphism (SAP).
#@Zhi-Qiang Ye,Shuqi Zhao,Ge Gao,Xiao-Qiao Liu,Robert E. Langlois,Hui Lu,Liping Wei
#t2007
#cBioinformatics
#index767184
#% 
#!
  
#*A Markov random field model for network-based analysis of genomic data.
#@Zhi Wei,Hongzhe Li
#t2007
#cBioinformatics
#index767185
#% 
#!
  
#*Quantitating tissue specificity of human genes to facilitate biomarker discovery.
#@George Vasmatzis,Eric W. Klee,Dagmar M. Kube,Terry M. Therneau,Farhad Kosari
#t2007
#cBioinformatics
#index767186
#% 
#!
  
#*Human recombination rates are increased around accelerated conserved regions - evidence for continued selection?
#@Jan Freudenberg,Ying-Hui Fu,Louis J. Ptácek
#t2007
#cBioinformatics
#index767187
#% 
#!
  
#*BioDownloader: bioinformatics downloads and updates in a few clicks.
#@Maxim V. Shapovalov,Adrian A. Canutescu,Roland L. Dunbrack Jr.
#t2007
#cBioinformatics
#index767188
#% 
#!
  
#*Simultaneous and exact interval estimates for the contrast of two groups based on an extremely high dimensional variable: application to mass spec data.
#@Yuhyun Park,Sean R. Downing,Dohyun Kim,William C. Hahn,Cheng Li,Philip W. Kantoff,L. J. Wei
#t2007
#cBioinformatics
#index767189
#% 
#!
  
#*GENOME: a rapid coalescent-based whole genome simulator.
#@Liming Liang,Sebastian Zöllner,Gonçalo R. Abecasis
#t2007
#cBioinformatics
#index767190
#% 
#!
  
#*Simulating Epstein-Barr virus infection with C-ImmSim.
#@Filippo Castiglione,Karen Duca,Abdul Salam Jarrah,Reinhard C. Laubenbacher,Donna Hochberg,David Thorley-Lawson
#t2007
#cBioinformatics
#index767191
#% 
#!
  
#*Data reduction of isotope-resolved LC-MS spectra.
#@Peicheng Du,Rajagopalan Sudha,Michael B. Prystowsky,Ruth Hogue Angeletti
#t2007
#cBioinformatics
#index767192
#% 
#!
  
#*PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure.
#@Michal J. Pietal,Irina Tuszynska,Janusz M. Bujnicki
#t2007
#cBioinformatics
#index767193
#% 
#!
  
#*SNPTools: a software tool for visualization and analysis of microarray data.
#@Frank J. Sørensen,Claus L. Andersen,Carsten Wiuf
#t2007
#cBioinformatics
#index767194
#% 
#!
  
#*Detection of generic spaced motifs using submotif pattern mining.
#@Edward Wijaya,Kanagasabai Rajaraman,Siu-Ming Yiu,Wing-Kin Sung
#t2007
#cBioinformatics
#index767195
#% 
#!
  
#*Modeling nonlinearity in dilution design microarray data.
#@Xiuwen Zheng,Hung-Chung Huang,Wenyuan Li,Peng Liu,Quan-Zhen Li,Ying Liu
#t2007
#cBioinformatics
#index767196
#% 
#!
  
#*MedicCyc: a biochemical pathway database for .
#@Ewa Urbanczyk-Wochniak,Lloyd W. Sumner
#t2007
#cBioinformatics
#index767197
#% 
#!
  
#*Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases.
#@Alexander V. Alekseyenko,Christopher J. Lee
#t2007
#cBioinformatics
#index767198
#% 
#!
  
#*A sequential Monte Carlo EM approach to the transcription factor binding site identification problem.
#@Edmund S. Jackson,William J. Fitzgerald
#t2007
#cBioinformatics
#index767199
#% 
#!
  
#*uBioRSS: Tracking taxonomic literature using RSS.
#@Patrick R. Leary,David P. Remsen,Catherine N. Norton,David J. Patterson,Indra Neil Sarkar
#t2007
#cBioinformatics
#index767200
#% 
#!
  
#*Two-stage designs applying methods differing in costs.
#@Alexandra Goll,Peter Bauer
#t2007
#cBioinformatics
#index767201
#% 
#!
  
#*SQUINT: a multiple alignment program and editor.
#@Matthew Goode,Allen G. Rodrigo
#t2007
#cBioinformatics
#index767202
#% 
#!
  
#*Unsupervised segmentation of continuous genomic data.
#@Nathan Day,Andrew Hemmaplardh,Robert Thurman,John A. Stamatoyannopoulos,William Stafford Noble
#t2007
#cBioinformatics
#index767203
#% 
#!
  
#*Classification based upon gene expression data: bias and precision of error rates.
#@Ian A. Wood,Peter M. Visscher,Kerrie L. Mengersen
#t2007
#cBioinformatics
#index767204
#% 
#!
  
#*An approximation method for solving the steady-state probability distribution of probabilistic Boolean networks.
#@Wai-Ki Ching,Shuqin Zhang,Michael K. Ng,Tatsuya Akutsu
#t2007
#cBioinformatics
#index767205
#% 
#!
  
#*A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.
#@Yuanyuan Xiao,Mark R. Segal,Yee Hwa Yang,Ru-Fang Yeh
#t2007
#cBioinformatics
#index767206
#% 
#!
  
#*De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures.
#@Stanley Ng Kwang Loong,Santosh K. Mishra
#t2007
#cBioinformatics
#index767207
#% 
#!
  
#*Automatic recognition and annotation of gene expression patterns of fly embryos.
#@Jie Zhou,Hanchuan Peng
#t2007
#cBioinformatics
#index767208
#% 
#!
  
#*SCEPTRANS: an online tool for analyzing periodic transcription in yeast.
#@Andrzej Kudlicki,Maga Rowicka,Zbyszek Otwinowski
#t2007
#cBioinformatics
#index767209
#% 
#!
  
#*GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor.
#@Sean Davis,Paul S. Meltzer
#t2007
#cBioinformatics
#index767210
#% 
#!
  
#*OBO to OWL: a protégé OWL tab to read/save OBO ontologies.
#@Dilvan A. Moreira,Mark A. Musen
#t2007
#cBioinformatics
#index767211
#% 
#!
  
#*Biclustering as a method for RNA local multiple sequence alignment.
#@Shu Wang,Robin Ray Gutell,Daniel P. Miranker
#t2007
#cBioinformatics
#index767212
#% 
#!
  
#*A global approach to identify differentially expressed genes in cDNA (two-color) microarray experiments.
#@Yiyong Zhou,Corentin Cras-Méneur,Mitsuru Ohsugi,Gary D. Stormo,M. Alan Permutt
#t2007
#cBioinformatics
#index767213
#% 
#!
  
#*VISDA: an open-source caBIG analytical tool for data clustering and beyond.
#@Jiajing Wang,Huai Li,Yitan Zhu,Malik Yousef,Michael Nebozhyn,Michael M. Showe,Louise C. Showe,Jianhua Xuan,Robert Clarke,Yue Wang
#t2007
#cBioinformatics
#index767214
#% 
#!
  
#*Interaction-site prediction for protein complexes: a critical assessment.
#@Huan-Xiang Zhou,Sanbo Qin
#t2007
#cBioinformatics
#index767215
#% 
#!
  
#*BiVisu: software tool for bicluster detection and visualization.
#@Kin-On Cheng,Ngai-Fong Law,Wan-Chi Siu,T. H. Lau
#t2007
#cBioinformatics
#index767216
#% 
#!
  
#*AssociationDB: web-based exploration of genomic association.
#@Dominik Seelow,Katrin Hoffmann,Tom H. Lindner
#t2007
#cBioinformatics
#index767217
#% 
#!
  
#*Bayesian inference for dynamic transcriptional regulation; the Hes1 system as a case study.
#@Elizabeth A. Heron,Bärbel Finkenstädt,David A. Rand
#t2007
#cBioinformatics
#index767218
#% 
#!
  
#*Boltzmann probability of RNA structural neighbors and riboswitch detection.
#@Eva Freyhult,Vincent Moulton,Peter Clote
#t2007
#cBioinformatics
#index767219
#% 
#!
  
#*Non-parametric quantification of protein lysate arrays.
#@Jianhua Hu,Xuming He,Keith A. Baggerly,Kevin R. Coombes,Bryan T. J. Hennessy,Gordon B. Mills
#t2007
#cBioinformatics
#index767220
#% 
#!
  
#*Extending assembly of short DNA sequences to handle error.
#@William R. Jeck,Josephine A. Reinhardt,David A. Baltrus,Matthew T. Hickenbotham,Vincent Magrini,Elaine R. Mardis,Jeffery L. Dangl,Corbin D. Jones
#t2007
#cBioinformatics
#index767221
#% 
#!
  
#*Clustering by soft-constraint affinity propagation: applications to gene-expression data.
#@Michele Leone,Sumedha,Martin Weigt
#t2007
#cBioinformatics
#index767222
#% 
#!
  
#*Carbon-fate maps for metabolic reactions.
#@Fangping Mu,Robert F. Williams,Clifford J. Unkefer,Pat J. Unkefer,James R. Faeder,William S. Hlavacek
#t2007
#cBioinformatics
#index767223
#% 
#!
  
#*meta-PPISP: a meta web server for protein-protein interaction site prediction.
#@Sanbo Qin,Huan-Xiang Zhou
#t2007
#cBioinformatics
#index767224
#% 
#!
  
#*Assessment of survival prediction models based on microarray data.
#@Martin Schumacher,Harald Binder,Thomas Gerds
#t2007
#cBioinformatics
#index767225
#% 
#!
  
#*Prediction of Ras-effector interactions using position energy matrices.
#@Christina Kiel,Luis Serrano
#t2007
#cBioinformatics
#index767226
#% 
#!
  
#*Characterization of mismatch and high-signal intensity probes associated with Affymetrix genechips.
#@Yonghong Wang,Ze-Hong Miao,Yves Pommier,Ernest S. Kawasaki,Audrey Player
#t2007
#cBioinformatics
#index767227
#% 
#!
  
#*PQuad - a visual analysis platform for proteomic data exploration of microbial organisms.
#@Bobbie-Jo M. Webb-Robertson,Elena S. Peterson,Mudita Singhal,Kyle R. Klicker,Christopher S. Oehmen,Joshua N. Adkins,Susan L. Havre
#t2007
#cBioinformatics
#index767228
#% 
#!
  
#*Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat.
#@Taishin Kin,Yukiteru Ono
#t2007
#cBioinformatics
#index767229
#% 
#!
  
#*PLMaddon: a power-law module for the Matlab SBToolbox.
#@Julio Vera,Cheng Sun,Yvonne Oertel,Olaf Wolkenhauer
#t2007
#cBioinformatics
#index767230
#% 
#!
  
#*THOR: targeted high-throughput ortholog reconstructor.
#@Matthew N. Bainbridge,René L. Warren,An He,Mikhail Bilenky,Gordon Robertson,Steven J. M. Jones
#t2007
#cBioinformatics
#index767231
#% 
#!
  
#*Protein solubility: sequence based prediction and experimental verification.
#@Pawel Smialowski,Antonio J. Martin-Galiano,Aleksandra Mikolajka,Tobias Girschick,Tad A. Holak,Dmitrij Frishman
#t2007
#cBioinformatics
#index767232
#% 
#!
  
#*XtalPred: a web server for prediction of protein crystallizability.
#@Lukasz Slabinski,Lukasz Jaroszewski,Leszek Rychlewski,Ian A. Wilson,Scott A. Lesley,Adam Godzik
#t2007
#cBioinformatics
#index767233
#% 
#!
  
#*The high-level similarity of some disparate gene expression measures.
#@Nandini Raghavan,An M. I. M. De Bondt,Willem Talloen,Dieder Moechars,Hinrich W. H. Göhlmann,Dhammika Amaratunga
#t2007
#cBioinformatics
#index767234
#% 
#!
  
#*The DOMON domains are involved in heme and sugar recognition.
#@Lakshminarayan M. Iyer,Vivek Anantharaman,L. Aravind
#t2007
#cBioinformatics
#index767235
#% 
#!
  
#*Optimization of primer design for the detection of variable genomic lesions in cancer.
#@Ali Bashir,Yu-Tsueng Liu,Benjamin J. Raphael,Dennis Carson,Vineet Bafna
#t2007
#cBioinformatics
#index767236
#% 
#!
  
#*Cyto-Sim: a formal language model and stochastic simulator of membrane-enclosed biochemical processes.
#@Sean Sedwards,Tommaso Mazza
#t2007
#cBioinformatics
#index767237
#% 
#!
  
#*ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets.
#@Wenjie Deng,David C. Nickle,Gerald H. Learn,Brandon Maust,James I. Mullins
#t2007
#cBioinformatics
#index767238
#% 
#!
  
#*Murlet: a practical multiple alignment tool for structural RNA sequences.
#@Hisanori Kiryu,Yasuo Tabei,Taishin Kin,Kiyoshi Asai
#t2007
#cBioinformatics
#index767239
#% 
#!
  
#*: an open-source tool for integrated protein identification and quantitation.
#@Ted Laderas,Cory Bystrom,Debra McMillen,Guang Fan,Shannon K. McWeeney
#t2007
#cBioinformatics
#index767240
#% 
#!
  
#*HMMoC - a compiler for hidden Markov models.
#@Gerton Lunter
#t2007
#cBioinformatics
#index767241
#% 
#!
  
#*Annotation-based distance measures for patient subgroup discovery in clinical microarray studies.
#@Claudio Lottaz,Joern Toedling,Rainer Spang
#t2007
#cBioinformatics
#index767242
#% 
#!
  
#*Effect of the mutation rate and background size on the quality of pathogen identification.
#@Chris Reed,Viacheslav Fofanov,Catherine Putonti,Sergei Chumakov,Tom Slezak,Yuriy Fofanov
#t2007
#cBioinformatics
#index767243
#% 
#!
  
#*A computational strategy for the prediction of functional linear peptide motifs in proteins.
#@Holger Dinkel,Heinrich Sticht
#t2007
#cBioinformatics
#index767244
#% 
#!
  
#*A statistical approach using network structure in the prediction of protein characteristics.
#@Pao-Yang Chen,Charlotte M. Deane,Gesine Reinert
#t2007
#cBioinformatics
#index767245
#% 
#!
  
#*SNP detection exploiting multiple sources of redundancy in large EST collections improves validation rates.
#@Ben J. Hayes,Kjetil Nilsen,Paul R. Berg,Eli Grindflek,Sigbjørn Lien
#t2007
#cBioinformatics
#index767246
#% 
#!
  
#*Modeling protein loops with knowledge-based prediction of sequence-structure alignment.
#@Hung-Pin Peng,An-Suei Yang
#t2007
#cBioinformatics
#index767247
#% 
#!
  
#*Genetdes: automatic design of transcriptional networks.
#@Guillermo Rodrigo,Javier Carrera,Alfonso Jaramillo
#t2007
#cBioinformatics
#index767248
#% 
#!
  
#*PFRES: protein fold classification by using evolutionary information and predicted secondary structure.
#@Ke Chen,Lukasz A. Kurgan
#t2007
#cBioinformatics
#index767249
#% 
#!
  
#*Construction of a reference gene association network from multiple profiling data: application to data analysis.
#@Duygu Ucar,Isaac Neuhaus,Petra Ross-MacDonald,Charles Tilford,Srinivasan Parthasarathy,Nathan O. Siemers,Rui-Ru Ji
#t2007
#cBioinformatics
#index767250
#% 
#!
  
#*Quality estimation of multiple sequence alignments by Bayesian hypothesis testing.
#@Andrija Tomovic,Edward J. Oakeley
#t2007
#cBioinformatics
#index767251
#% 
#!
  
#*MutationFinder: a high-performance system for extracting point mutation mentions from text.
#@J. Gregory Caporaso,William A. Baumgartner Jr.,David A. Randolph,K. Bretonnel Cohen,Lawrence Hunter
#t2007
#cBioinformatics
#index767252
#% 
#!
  
#*Graph-based consensus clustering for class discovery from gene expression data.
#@Zhiwen Yu,Hau-San Wong,Hong-Qiang Wang
#t2007
#cBioinformatics
#index767253
#% 
#!
  
#*StrBioLib: a Java library for development of custom computational structural biology applications.
#@John-Marc Chandonia
#t2007
#cBioinformatics
#index767254
#% 
#!
  
#*Log-linear model-based multifactor dimensionality reduction method to detect gene-gene interactions.
#@Seung Yeoun Lee,Yujin Chung,Robert C. Elston,Youngchul Kim,Taesung Park
#t2007
#cBioinformatics
#index767255
#% 
#!
  
#*EuSplice: a unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes.
#@Ashwini Bhasi,Ram Vinay Pandey,Suriya Prabha Utharasamy,Periannan Senapathy
#t2007
#cBioinformatics
#index767256
#% 
#!
  
#*RAGPOOLS: RNA-As-Graph-Pools - a web server for assisting the design of structured RNA pools for selection.
#@Namhee Kim,Jin Sup Shin,Shereef Elmetwaly,Hin Hark Gan,Tamar Schlick
#t2007
#cBioinformatics
#index767257
#% 
#!
  
#*A phylogenetic Gibbs sampler that yields centroid solutions for -regulatory site prediction.
#@Lee Aaron Newberg,William A. Thompson,Sean Conlan,Thomas M. Smith,Lee Ann McCue,Charles E. Lawrence
#t2007
#cBioinformatics
#index767258
#% 
#!
  
#*A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts.
#@Yizhi Cai,Brian Hartnett,Claes Gustafsson,Jean Peccoud
#t2007
#cBioinformatics
#index767259
#% 
#!
  
#*Context-sensitive data integration and prediction of biological networks.
#@Chad L. Myers,Olga G. Troyanskaya
#t2007
#cBioinformatics
#index767260
#% 
#!
  
#*Modeling the adaptive immune system: predictions and simulations.
#@Claus Lundegaard,Ole Lund,Can Kesmir,Søren Brunak,Morten Nielsen
#t2007
#cBioinformatics
#index767261
#% 
#!
  
#*Modular decomposition of metabolic reaction networks based on flux analysis and pathway projection.
#@Jeongah Yoon,Yaguang Si,Ryan Nolan,Kyongbum Lee
#t2007
#cBioinformatics
#index767262
#% 
#!
  
#*Rapid assessment of correlated amino acids from pair-to-pair (P2P) substitution matrices.
#@Eran Eyal,Shmuel Pietrokovski,Ivet Bahar
#t2007
#cBioinformatics
#index767263
#% 
#!
  
#*Creating protein models from electron-density maps using particle-filtering methods.
#@Frank DiMaio,Dmitry A. Kondrashov,Eduard Bitto,Ameet Soni,Craig A. Bingman,George N. Phillips Jr.,Jude W. Shavlik
#t2007
#cBioinformatics
#index767264
#% 
#!
  
#*Naïve Bayes for microRNA target predictions - machine learning for microRNA targets.
#@Malik Yousef,Segun Jung,Andrew V. Kossenkov,Louise C. Showe,Michael K. Showe
#t2007
#cBioinformatics
#index767265
#% 
#!
  
#*An error model for protein quantification.
#@C. Kreutz,M. M. Bartolome Rodriguez,Thomas Maiwald,M. Seidl,H. E. Blum,L. Mohr,Jens Timmer
#t2007
#cBioinformatics
#index767266
#% 
#!
  
#*DITOP: drug-induced toxicity related protein database.
#@Jing-Xian Zhang,Wei-Juan Huang,Jing-Hua Zeng,Wen-Hui Huang,Yi Wang,Rui Zhao,Bu-Cong Han,Qing-Feng Liu,Yu Zong Chen,Zhi Liang Ji
#t2007
#cBioinformatics
#index767267
#% 
#!
  
#*Medline search engine for finding genetic markers with biological significance.
#@Weijian Xuan,Pinglang Wang,Stanley J. Watson,Fan Meng
#t2007
#cBioinformatics
#index767268
#% 
#!
  
#*POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix.
#@Kana Shimizu,Shuichi Hirose,Tamotsu Noguchi
#t2007
#cBioinformatics
#index767269
#% 
#!
  
#*GAzer: gene set analyzer.
#@Sang-Bae Kim,Sungjin Yang,Seon-Kyu Kim,Sang Cheol Kim,Hyun Goo Woo,David J. Volsky,Seon-Young Kim,In-Sun Chu
#t2007
#cBioinformatics
#index767270
#% 
#!
  
#*Inferring transcriptional regulatory networks from high-throughput data.
#@Rui-Sheng Wang,Yong Wang,Xiang-Sun Zhang,Luonan Chen
#t2007
#cBioinformatics
#index767271
#% 
#!
  
#*A novel non-overlapping bi-clustering algorithm for network generation using living cell array data.
#@Eric Yang,Panagiota T. Foteinou,K. R. King,Martin L. Yarmush,Ioannis P. Androulakis
#t2007
#cBioinformatics
#index767272
#% 
#!
  
#*Nucleotide composition string selection in HIV-1 subtyping using whole genomes.
#@Xiaomeng Wu,Zhipeng Cai,Xiu-Feng Wan,Tin Hoang,Randy Goebel,Guohui Lin
#t2007
#cBioinformatics
#index767273
#% 
#!
  
#*Improved BLAST searches using longer words for protein seeding.
#@Sergey A. Shiryev,Jason S. Papadopoulos,Alejandro A. Schäffer,Richa Agarwala
#t2007
#cBioinformatics
#index767274
#% 
#!
  
#*TFmodeller: comparative modelling of protein-DNA complexes.
#@Bruno Contreras-Moreira,Pierre-Alain Branger,Julio Collado-Vides
#t2007
#cBioinformatics
#index767275
#% 
#!
  
#*Möbius: an integrated discrete-event modeling environment.
#@Jean Peccoud,Tod Courtney,William H. Sanders
#t2007
#cBioinformatics
#index767276
#% 
#!
  
#*The qualitative and time-dependent character of spatial relations in biomedical ontologies.
#@Thomas Bittner,Louis J. Goldberg
#t2007
#cBioinformatics
#index767277
#% 
#!
  
#*Wordom: a program for efficient analysis of molecular dynamics simulations.
#@Michele Seeber,Marco Cecchini,Francesco Rao,Giovanni Settanni,Amedeo Caflisch
#t2007
#cBioinformatics
#index767278
#% 
#!
  
#*Web-based GeneChip analysis system for large-scale collaborative projects.
#@Manhong Dai,Pinglang Wang,Elvis Jakupovic,Stanley J. Watson,Fan Meng
#t2007
#cBioinformatics
#index767279
#% 
#!
  
#*STOP: searching for transcription factor motifs using gene expression.
#@Libi Hertzberg,Shai Izraeli,Eytan Domany
#t2007
#cBioinformatics
#index767280
#% 
#!
  
#*Enhancing the functional annotation of PDB structures in PDBsum using key figures extracted from the literature.
#@Roman A. Laskowski
#t2007
#cBioinformatics
#index767281
#% 
#!
  
#*FIST: a sensory domain for diverse signal transduction pathways in prokaryotes and ubiquitin signaling in eukaryotes.
#@Kirill Borziak,Igor B. Zhulin
#t2007
#cBioinformatics
#index767282
#% 
#!
  
#*Error detection in SNP data by considering the likelihood of recombinational history implied by three-site combinations.
#@Donna M. Toleno,Peter L. Morrell,Michael T. Clegg
#t2007
#cBioinformatics
#index767283
#% 
#!
  
#*Recombination-filtered genomic datasets by information maximization.
#@August E. Woerner,Murray P. Cox,Michael F. Hammer
#t2007
#cBioinformatics
#index767284
#% 
#!
  
#*Efficient parameter estimation for spatio-temporal models of pattern formation: case study of .
#@Yves Fomekong-Nanfack,Jaap A. Kaandorp,Joke G. Blom
#t2007
#cBioinformatics
#index767285
#% 
#!
  
#*Improving gene quantification by adjustable spot-image restoration.
#@Antonis Daskalakis,Dionisis Cavouras,Panagiotis Bougioukos,Spiros Kostopoulos,Dimitris Glotsos,Ioannis Kalatzis,George C. Kagadis,Christos Argyropoulos,George Nikiforidis
#t2007
#cBioinformatics
#index767286
#% 
#!
  
#*QPRIMER: a quick web-based application for designing conserved PCR primers from multigenome alignments.
#@Namshin Kim,Christopher Lee
#t2007
#cBioinformatics
#index767287
#% 
#!
  
#*Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA.
#@María José Nueda,Ana Conesa,Johan A. Westerhuis,Huub C. J. Hoefsloot,Age K. Smilde,Manuel Talón,Alberto Ferrer
#t2007
#cBioinformatics
#index767288
#% 
#!
  
#*Steady-state expression of self-regulated genes.
#@Thomas Fournier,Jean-Pierre Gabriel,Christian Mazza,Jerome Pasquier,Jose L. Galbete,Nicolas Mermod
#t2007
#cBioinformatics
#index767289
#% 
#!
  
#*Unsupervised feature selection under perturbations: meeting the challenges of biological data.
#@Roy Varshavsky,Assaf Gottlieb,David Horn,Michal Linial
#t2007
#cBioinformatics
#index767290
#% 
#!
  
#*Clustal W and Clustal X version 2.0.
#@M. A. Larkin,Gordon Blackshields,N. P. Brown,R. Chenna,Paul A. McGettigan,Hamish McWilliam,Franck Valentin,Iain M. Wallace,Andreas Wilm,Rodrigo Lopez,Julie Dawn Thompson,Toby J. Gibson,Desmond G. Higgins
#t2007
#cBioinformatics
#index767291
#% 
#!
  
#*Computational identification of candidate loci for recessively inherited mutation using high-throughput SNP arrays.
#@Marko Laakso,Sari Tuupanen,Auli Karhu,Rainer Lehtonen,Lauri A. Aaltonen,Sampsa Hautaniemi
#t2007
#cBioinformatics
#index767292
#% 
#!
  
#*The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs).
#@Vachiranee Limviphuvadh,Seigo Tanaka,Susumu Goto,Kunihiro Ueda,Minoru Kanehisa
#t2007
#cBioinformatics
#index767293
#% 
#!
  
#*sMOL Explorer: an open source, web-enabled database and exploration tool for Small MOLecules datasets.
#@Supawadee Ingsriswang,Eakasit Pacharawongsakda
#t2007
#cBioinformatics
#index767294
#% 
#!
  
#*Visualization-based cancer microarray data classification analysis.
#@Minca Mramor,Gregor Leban,Janez Demsar,Blaz Zupan
#t2007
#cBioinformatics
#index767295
#% 
#!
  
#*Mining complex genotypic features for predicting HIV-1 drug resistance.
#@Hiroto Saigo,Takeaki Uno,Koji Tsuda
#t2007
#cBioinformatics
#index767296
#% 
#!
  
#*Expression ratio evaluation in two-colour microarray experiments is significantly improved by correcting image misalignment.
#@Thomas Tang,Nicolas François,Annie Glatigny,Nicolas Agier,Marie-Hélène Mucchielli-Giorgi,Lawrence Aggerbeck,Hervé Delacroix
#t2007
#cBioinformatics
#index767297
#% 
#!
  
#*Logistic regression for disease classification using microarray data: model selection in a large and small case.
#@J. G. Liao,Khew-Voon Chin
#t2007
#cBioinformatics
#index767298
#% 
#!
  
#*Natively unstructured regions in proteins identified from contact predictions.
#@Avner Schlessinger,Marco Punta,Burkhard Rost
#t2007
#cBioinformatics
#index767299
#% 
#!
  
#*A Laboratory Information Management System (LIMS) for a high throughput genetic platform aimed at candidate gene mutation screening.
#@C. Voegele,S. V. Tavtigian,D. de Silva,S. Cuber,A. Thomas,F. Le Calvez-Kelm
#t2007
#cBioinformatics
#index767300
#% 
#!
  
#*ProtBuD: a database of biological unit structures of protein families and superfamilies.
#@Qifang Xu,Adrian A. Canutescu,Zoran Obradovic,Roland L. Dunbrack Jr.
#t2007
#cBioinformatics
#index767301
#% 
#!
  
#*HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling.
#@Bonnie Kirkpatrick,Carlos Santos Armendariz,Richard M. Karp,Eran Halperin
#t2007
#cBioinformatics
#index767302
#% 
#!
  
#*Tools for visually exploring biological networks.
#@Matthew Suderman,Michael T. Hallett
#t2007
#cBioinformatics
#index767303
#% 
#!
  
#*Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: Combining GOR V and Fragment Database Mining (FDM).
#@Haitao Cheng,Taner Z. Sen,Robert L. Jernigan,Andrzej Kloczkowski
#t2007
#cBioinformatics
#index767304
#% 
#!
  
#*dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis.
#@Seung-Hee Bae,Haixu Tang,Jing Wu,Jun Xie,Sun Kim
#t2007
#cBioinformatics
#index767305
#% 
#!
  
#*Analysis and identification of beta-turn types using multinomial logistic regression and artificial neural network.
#@Mehdi Poursheikhali Asgary,Samad Jahandideh,Parviz Abdolmaleki,Anoshirvan Kazemnejad
#t2007
#cBioinformatics
#index767306
#% 
#!
  
#*Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data.
#@Rosalia Maglietta,Ada Piepoli,Domenico Catalano,Piepoli Licciulli,Massimo Carella,Sabino Liuni,Graziano Pesole,Francesco Perri,Nicola Ancona
#t2007
#cBioinformatics
#index767307
#% 
#!
  
#*TAPPA: topological analysis of pathway phenotype association.
#@Shouguo Gao,Xujing Wang
#t2007
#cBioinformatics
#index767308
#% 
#!
  
#*A quantitative genotype algorithm reflecting H5N1 Avian influenza niches.
#@Xiu-Feng Wan,Guorong Chen,Feng Luo,Michael Emch,Ruben O. Donis
#t2007
#cBioinformatics
#index767309
#% 
#!
  
#*Exploring biological network structure using exponential random graph models.
#@Zachary M. Saul,Vladimir Filkov
#t2007
#cBioinformatics
#index767310
#% 
#!
  
#*Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data.
#@Nicola Soranzo,Ginestra Bianconi,Claudio Altafini
#t2007
#cBioinformatics
#index767311
#% 
#!
  
#*CTX-BLAST: context sensitive version of protein BLAST.
#@Anna Gambin,Piotr Wojtalewicz
#t2007
#cBioinformatics
#index767312
#% 
#!
  
#*PhylArray: phylogenetic probe design algorithm for microarray.
#@Cécile Militon,Sébastien Rimour,Mohieddine Missaoui,Corinne Biderre,Vincent Barra,David R. C. Hill,Anne Moné,Geneviève Gagne,Harald Meier,Eric Peyretaillade,Pierre Peyret
#t2007
#cBioinformatics
#index767313
#% 
#!
  
#*Boosting multiclass learning with repeating codes and weak detectors for protein subcellular localization.
#@Chung-Chih Lin,Yuh-Show Tsai,Yu-Shi Lin,Tai-Yu Chiu,Chia-Cheng Hsiung,May-I. Lee,Jeremy C. Simpson,Chun-Nan Hsu
#t2007
#cBioinformatics
#index767314
#% 
#!
  
#*Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network.
#@Zheng Guo,Yongjin Li,Xue Gong,Chen Yao,Wencai Ma,Dong Wang,Yanhui Li,Jing Zhu,Min Zhang,Da Yang,Jing Wang
#t2007
#cBioinformatics
#index767315
#% 
#!
  
#*Penalized and weighted -means for clustering with scattered objects and prior information in high-throughput biological data.
#@George C. Tseng
#t2007
#cBioinformatics
#index767316
#% 
#!
  
#*beadarray: R classes and methods for Illumina bead-based data.
#@Mark J. Dunning,Mike L. Smith,Matthew E. Ritchie,Simon Tavaré
#t2007
#cBioinformatics
#index767317
#% 
#!
  
#*Alignment of molecular networks by integer quadratic programming.
#@Zhen-Ping Li,Shi-Hua Zhang,Yong Wang,Xiang-Sun Zhang,Luonan Chen
#t2007
#cBioinformatics
#index767318
#% 
#!
  
#*Multivariate correlation estimator for inferring functional relationships from replicated genome-wide data.
#@Dongxiao Zhu,Youjuan Li,Hua Li
#t2007
#cBioinformatics
#index767319
#% 
#!
  
#*AVIS: AJAX viewer of interactive signaling networks.
#@Seth I. Berger,Ravi Iyengar,Avi Ma'ayan
#t2007
#cBioinformatics
#index767320
#% 
#!
  
#*A review of feature selection techniques in bioinformatics.
#@Yvan Saeys,Iñaki Inza,Pedro Larrañaga
#t2007
#cBioinformatics
#index767321
#% 
#!
  
#*Haplotype inference for present-absent genotype data using previously identified haplotypes and haplotype patterns.
#@Yun Joo Yoo,Jianming Tang,Richard A. Kaslow,Kui Zhang
#t2007
#cBioinformatics
#index767322
#% 
#!
  
#*HaploBuild: an algorithm to construct non-contiguous associated haplotypes in family based genetic studies.
#@Jason M. Laramie,Jemma B. Wilk,Anita L. DeStefano,Richard H. Myers
#t2007
#cBioinformatics
#index767323
#% 
#!
  
#*Functional profiling of microarray experiments using text-mining derived bioentities.
#@Pablo Minguez,Fátima Al-Shahrour,David Montaner,Joaquín Dopazo
#t2007
#cBioinformatics
#index767324
#% 
#!
  
#*Marker development for the genetic study of natural variation in .
#@Adnane Nemri,Michael M. Neff,Michael Burrell,Jonathan D. G. Jones,David J. Studholme
#t2007
#cBioinformatics
#index767325
#% 
#!
  
#*TMpro web server and web service: transmembrane helix prediction through amino acid property analysis.
#@Madhavi Ganapathiraju,Christopher Jon Jursa,Hassan A. Karimi,Judith Klein-Seetharaman
#t2007
#cBioinformatics
#index767326
#% 
#!
  
#*Exploiting sample variability to enhance multivariate analysis of microarray data.
#@Carla S. Möller-Levet,Catharine M. West,Crispin J. Miller
#t2007
#cBioinformatics
#index767327
#% 
#!
  
#*BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations.
#@Arnaud Kerhornou,Roderic Guigó
#t2007
#cBioinformatics
#index767328
#% 
#!
  
#*Biological network mapping and source signal deduction.
#@Mark P. Brynildsen,Tung-Yun Wu,Shi-Shang Jang,James C. Liao
#t2007
#cBioinformatics
#index767329
#% 
#!
  
#*Statistical prediction of protein-chemical interactions based on chemical structure and mass spectrometry data.
#@Nobuyoshi Nagamine,Yasubumi Sakakibara
#t2007
#cBioinformatics
#index767330
#% 
#!
  
#*Exploring the functional landscape of gene expression: directed search of large microarray compendia.
#@Matthew A. Hibbs,David C. Hess,Chad L. Myers,Curtis Huttenhower,Kai Li,Olga G. Troyanskaya
#t2007
#cBioinformatics
#index767331
#% 
#!
  
#*Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics.
#@Andrew K. Smith,Kei-Hoi Cheung,Michael Krauthammer,Martin H. Schultz,Mark Gerstein
#t2007
#cBioinformatics
#index767332
#% 
#!
  
#*Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN).
#@Francois Beaussart,January Weiner,Erich Bornberg-Bauer
#t2007
#cBioinformatics
#index767333
#% 
#!
  
#*CREx: inferring genomic rearrangements based on common intervals.
#@Matthias Bernt,Daniel Merkle,Kai Ramsch,Guido Fritzsch,Marleen Perseke,Detlef Bernhard,Martin Schlegel,Peter F. Stadler,Martin Middendorf
#t2007
#cBioinformatics
#index767334
#% 
#!
  
#*NAPROC-13: a database for the dereplication of natural product mixtures in bioassay-guided protocols.
#@José Luis López-Pérez,Roberto Therón,Esther del Olmo,David Díaz
#t2007
#cBioinformatics
#index767335
#% 
#!
  
#*Isolated ZP-N domains constitute the N-terminal extensions of Zona Pellucida proteins.
#@Isabelle Callebaut,Jean Paul Mornon,Philippe Monget
#t2007
#cBioinformatics
#index767336
#% 
#!
  
#*Associating quantitative behavioral traits with gene expression in the brain: searching for diamonds in the hay.
#@Anat Reiner-Benaim,Daniel Yekutieli,Noah E. Letwin,Gregory I. Elmer,Norman H. Lee,Neri Kafkafi,Yoav Benjamini
#t2007
#cBioinformatics
#index767337
#% 
#!
  
#*Robustness analysis and tuning of synthetic gene networks.
#@Grégory Batt,Boyan Yordanov,Ron Weiss,Calin Belta
#t2007
#cBioinformatics
#index767338
#% 
#!
  
#*Identification of amyloid fibril-forming segments based on structure and residue-based statistical potential.
#@Zhuqing Zhang,Hao Chen,Luhua Lai
#t2007
#cBioinformatics
#index767339
#% 
#!
  
#*EcoProDB: the Escherichia coli protein database.
#@Hongseok Yun,Jeong Wook Lee,Joonwoo Jeong,Jaesung Chung,Jong Myoung Park,Han Na Myoung,Sang Yup Lee
#t2007
#cBioinformatics
#index767340
#% 
#!
  
#*Quantitative quality-assessment techniques to compare fractionation and depletion methods in SELDI-TOF mass spectrometry experiments.
#@Jaroslaw Harezlak,Mike Wang,David Christiani,Xihong Lin
#t2007
#cBioinformatics
#index767341
#% 
#!
  
#*AutoCSA, an algorithm for high throughput DNA sequence variant detection in cancer genomes.
#@E. Dicks,J. W. Teague,P. Stephens,K. Raine,A. Yates,C. Mattocks,P. Tarpey,A. Butler,A. Menzies,D. Richardson,A. Jenkinson,H. Davies,S. Edkins,S. Forbes,K. Gray,C. Greenman,R. Shepherd,M. R. Stratton,P. A. Futreal,R. Wooster
#t2007
#cBioinformatics
#index767342
#% 
#!
  
#*Transducers: an emerging probabilistic framework for modeling indels on trees.
#@Robert K. Bradley,Ian Holmes
#t2007
#cBioinformatics
#index767343
#% 
#!
  
#*An improved algorithm for clustering gene expression data.
#@Sanghamitra Bandyopadhyay,Anirban Mukhopadhyay,Ujjwal Maulik
#t2007
#cBioinformatics
#index767344
#% 
#!
  
#*InterProSurf: a web server for predicting interacting sites on protein surfaces.
#@Surendra S. Negi,Catherine H. Schein,Numan Özgün,Trevor D. Power,Werner Braun
#t2007
#cBioinformatics
#index767345
#% 
#!
  
#*The K tree score: quantification of differences in the relative branch length and topology of phylogenetic trees.
#@Víctor Soria-Carrasco,Gerard Talavera,Javier Igea,Jose Castresana
#t2007
#cBioinformatics
#index767346
#% 
#!
  
#*RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
#@Xing Xu,Yongmei Ji,Gary D. Stormo
#t2007
#cBioinformatics
#index767347
#% 
#!
  
#*SciRoKo: a new tool for whole genome microsatellite search and investigation.
#@Robert Kofler,Christian Schlötterer,Tamas Lelley
#t2007
#cBioinformatics
#index767348
#% 
#!
  
#*Minimizing the overlap problem in protein NMR: a computational framework for precision amino acid labeling.
#@Michael J. Sweredoski,Kevin J. Donovan,Bao D. Nguyen,A. J. Shaka,Pierre Baldi
#t2007
#cBioinformatics
#index767349
#% 
#!
  
#*Low folding propensity and high translation efficiency distinguish substrates of GroEL from other proteins.
#@Orly Noivirt-Brik,Ron Unger,Amnon Horovitz
#t2007
#cBioinformatics
#index767350
#% 
#!
  
#*Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach.
#@Vasyl Pihur,Susmita Datta,Somnath Datta
#t2007
#cBioinformatics
#index767351
#% 
#!
  
#*On the hierarchical classification of G protein-coupled receptors.
#@Matthew N. Davies,Andrew Secker,Alex Alves Freitas,Miguel Mendao,Jonathan Timmis,Darren R. Flower
#t2007
#cBioinformatics
#index767352
#% 
#!
  
#*Computational methods for diffusion-influenced biochemical reactions.
#@Maciej Dobrzynski,Jordi Vidal Rodríguez,Jaap A. Kaandorp,Joke G. Blom
#t2007
#cBioinformatics
#index767353
#% 
#!
  
#*VisGenome: visualization of single and comparative genome representations.
#@Joanna Jakubowska,Ela Hunt,Matthew Chalmers,Martin McBride,Anna F. Dominiczak
#t2007
#cBioinformatics
#index767354
#% 
#!
  
#*PowerCore: a program applying the advanced M strategy with a heuristic search for establishing core sets.
#@Kyu-Won Kim,Hun-Ki Chung,Gyu-Taek Cho,Kyung-Ho Ma,Dorothy Chandrabalan,Jae-Gyun Gwag,Tae-San Kim,Eun-Gi Cho,Yong-Jin Park
#t2007
#cBioinformatics
#index767355
#% 
#!
  
#*Accurate prediction of enzyme mutant activity based on a multibody statistical potential.
#@Majid Masso,Iosif I. Vaisman
#t2007
#cBioinformatics
#index767356
#% 
#!
  
#*A congruence index for testing topological similarity between trees.
#@Damien M. de Vienne,Tatiana Giraud,Olivier C. Martin
#t2007
#cBioinformatics
#index767357
#% 
#!
  
#*ChromatinDB: a database of genome-wide histone modification patterns for .
#@Timothy R. O'Connor,John J. Wyrick
#t2007
#cBioinformatics
#index767358
#% 
#!
  
#*Clustering microarray-derived gene lists through implicit literature relationships.
#@Mark F. Burkart,Jonathan D. Wren,Jason I. Herschkowitz,Charles M. Perou,Harold R. Garner
#t2007
#cBioinformatics
#index767359
#% 
#!
  
#*Annotation of selection strengths in viral genomes.
#@Stephen McCauley,Saskia de Groot,Thomas Mailund,Jotun Hein
#t2007
#cBioinformatics
#index767360
#% 
#!
  
#*Systematic order-dependent effect in expression values, variance, detection calls and differential expression in Affymetrix GeneChips®.
#@Kathe E. Bjork,Karen Kafadar
#t2007
#cBioinformatics
#index767361
#% 
#!
  
#*MDQC: a new quality assessment method for microarrays based on quality control reports.
#@Gabriela V. Cohen Freue,Zsuzsanna Hollander,Enqing Shen,Ruben H. Zamar,Robert Balshaw,Andreas Scherer,Bruce McManus,Paul Keown,W. Robert McMaster,Raymond T. Ng
#t2007
#cBioinformatics
#index767362
#% 
#!
  
#*TreeSnatcher: coding trees from images.
#@Thomas Laubach,Arndt von Haeseler
#t2007
#cBioinformatics
#index767363
#% 
#!
  
#*Intersession reproducibility of mass spectrometry profiles and its effect on accuracy of multivariate classification models.
#@Richard Pelikan,William L. Bigbee,David Malehorn,James Lyons-Weiler,Milos Hauskrecht
#t2007
#cBioinformatics
#index767364
#% 
#!
  
#*Co-evolving residues in membrane proteins.
#@Angelika Fuchs,Antonio J. Martin-Galiano,Matan Kalman,Sarel J. Fleishman,Nir Ben-Tal,Dmitrij Frishman
#t2007
#cBioinformatics
#index767365
#% 
#!
  
#*Predicting survival from microarray data - a comparative study.
#@Hege M. Bøvelstad,Ståge Nygård,H. L. Størvold,Magne Aldrin,Ørnulf Borgan,Arnoldo Frigessi,Ole Christian Lingjærde
#t2007
#cBioinformatics
#index767366
#% 
#!
  
#*WilcoxCV: an R package for fast variable selection in cross-validation.
#@Anne-Laure Boulesteix
#t2007
#cBioinformatics
#index767367
#% 
#!
  
#*POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions.
#@Shuichi Hirose,Kana Shimizu,Satoru Kanai,Yutaka Kuroda,Tamotsu Noguchi
#t2007
#cBioinformatics
#index767368
#% 
#!
  
#*Probability-based pattern recognition and statistical framework for randomization: modeling tandem mass spectrum/peptide sequence false match frequencies.
#@Jian Feng,Daniel Q. Naiman,Bret Cooper
#t2007
#cBioinformatics
#index767369
#% 
#!
  
#*Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer.
#@Andreas Buness,Ruprecht Kuner,Markus Ruschhaupt,Annemarie Poustka,Holger Sültmann,Achim Tresch
#t2007
#cBioinformatics
#index767370
#% 
#!
  
#*Sliding MinPD: building evolutionary networks of serial samples via an automated recombination detection approach.
#@Patricia Buendia,Giri Narasimhan
#t2007
#cBioinformatics
#index767371
#% 
#!
  
#*Bayesian modelling of shared gene function.
#@P. Sykacek,R. Clarkson,C. Print,R. A. Furlong,Gos Micklem
#t2007
#cBioinformatics
#index767372
#% 
#!
  
#*Multiple spaced seeds for homology search.
#@Lucian Ilie,Silvana Ilie
#t2007
#cBioinformatics
#index767373
#% 
#!
  
#*Incorporating prior knowledge of gene functional groups into regularized discriminant analysis of microarray data.
#@Feng Tai,Wei Pan
#t2007
#cBioinformatics
#index767374
#% 
#!
  
#*HMM-Kalign: a tool for generating sub-optimal HMM alignments.
#@Emmanuelle Becker,Aurélie Cotillard,Vincent Meyer,Hocine Madaoui,Raphaël Guérois
#t2007
#cBioinformatics
#index767375
#% 
#!
  
#*Moment invariants as shape recognition technique for comparing protein binding sites.
#@Ingolf Sommer,Oliver Müller,Francisco S. Domingues,Oliver Sander,Joachim Weickert,Thomas Lengauer
#t2007
#cBioinformatics
#index767376
#% 
#!
  
#*NPIDB: a Database of Nucleic Acids-Protein Interactions.
#@Sergei A. Spirin,Mikhail Titov,Anna Karyagina,Andrei Alexeevski
#t2007
#cBioinformatics
#index767377
#% 
#!
  
#*Finding -regulatory modules in using phylogenetic hidden Markov models.
#@Wendy S. W. Wong,Rasmus Nielsen
#t2007
#cBioinformatics
#index767378
#% 
#!
  
#*A genotype calling algorithm for the Illumina BeadArray platform.
#@Yik Y. Teo,Michael Inouye,Kerrin S. Small,Rhian Gwilliam,Panagiotis Deloukas,Dominic Kwiatkowski,Taane G. Clark
#t2007
#cBioinformatics
#index767379
#% 
#!
  
#*A novel knowledge-based approach to design inorganic-binding peptides.
#@Ersin Emre Oren,Candan Tamerler,Deniz Sahin,Marketa Hnilova,Urartu Ozgur Safak Seker,Mehmet Sarikaya,Ram Samudrala
#t2007
#cBioinformatics
#index767380
#% 
#!
  
#*CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering.
#@Zuoshuang Xiang,Zhaohui S. Qin,Yongqun He
#t2007
#cBioinformatics
#index767381
#% 
#!
  
#*Context-dependent clustering for dynamic cellular state modeling of microarray gene expression.
#@Shinsheng Yuan,Ker-Chau Li
#t2007
#cBioinformatics
#index767382
#% 
#!
  
#*oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language.
#@Remo Sanges,Francesca Cordero,Raffaele Calogero
#t2007
#cBioinformatics
#index767383
#% 
#!
  
#*Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications.
#@Haiyuan Yu,Ronald Jansen,Gustavo Stolovitzky,Mark Gerstein
#t2007
#cBioinformatics
#index767384
#% 
#!
  
#*Graph sharpening plus graph integration: a synergy that improves protein functional classification.
#@Hyunjung Shin,Andreas Martin Lisewski,Olivier Lichtarge
#t2007
#cBioinformatics
#index767385
#% 
#!
  
#*I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data.
#@Willem Talloen,Djork-Arné Clevert,Sepp Hochreiter,Dhammika Amaratunga,Luc Bijnens,Stefan Kass,Hinrich W. H. Göhlmann
#t2007
#cBioinformatics
#index767386
#% 
#!
  
#*iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences.
#@Bruno A. Gaëta,Harald R. Malming,Katherine J. L. Jackson,Michael E. Bain,Patrick Wilson,Andrew M. Collins
#t2007
#cBioinformatics
#index767387
#% 
#!
  
#*Reconstructing protein networks of epithelial differentiation from histological sections.
#@Niels Grabe,Thora Pommerencke,Thorsten Steinberg,Hartmut Dickhaus,Pascal Tomakidi
#t2007
#cBioinformatics
#index767388
#% 
#!
  
#*Short oligonucleotide probes containing G-stacks display abnormal binding affinity on Affymetrix microarrays.
#@Chunlei Wu,Haitao Zhao,Keith A. Baggerly,Roberto Carta,Li Zhang
#t2007
#cBioinformatics
#index767389
#% 
#!
  
#*MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.
#@Stinus Lindgreen,Paul P. Gardner,Anders Krogh
#t2007
#cBioinformatics
#index767390
#% 
#!
  
#*EGEETomo: a user-friendly, fault-tolerant and grid-enabled application for 3D reconstruction in electron tomography.
#@Jose-Roman Bilbao-Castro,Inmaculada García,José-Jesús Fernández
#t2007
#cBioinformatics
#index767391
#% 
#!
  
#*Tree Gibbs Sampler: identifying conserved motifs without aligning orthologous sequences.
#@Xiaohui Cai,Haiyan Hu,Xiaoman Shawn Li
#t2007
#cBioinformatics
#index767392
#% 
#!
  
#*The evolutionary forest algorithm.
#@Scotland C. Leman,Marcy K. Uyenoyama,Michael Lavine,Yuguo Chen
#t2007
#cBioinformatics
#index767393
#% 
#!
  
#*Four-Body Scoring Function for Mutagenesis.
#@Chris Deutsch,Bala Krishnamoorthy
#t2007
#cBioinformatics
#index767394
#% 
#!
  
#*Accurate prediction of deleterious protein kinase polymorphisms.
#@Ali Torkamani,Nicholas J. Schork
#t2007
#cBioinformatics
#index767395
#% 
#!
  
#*Optimization of HAART with genetic algorithms and agent-based models of HIV infection.
#@Filippo Castiglione,Francesco Pappalardo,Massimo Bernaschi,Santo Motta
#t2007
#cBioinformatics
#index767396
#% 
#!
  
#*Constraint-based functional similarity of metabolic genes: going beyond network topology.
#@Oleg Rokhlenko,Tomer Shlomi,Roded Sharan,Eytan Ruppin,Ron Y. Pinter
#t2007
#cBioinformatics
#index767397
#% 
#!
  
#*A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data.
#@Lennart J. G. Post,Marco Roos,M. Scott Marshall,Roel van Driel,Timo M. Breit
#t2007
#cBioinformatics
#index767398
#% 
#!
  
#*PfamAlyzer: domain-centric homology search.
#@Volker Hollich,Erik L. L. Sonnhammer
#t2007
#cBioinformatics
#index767399
#% 
#!
  
#*TAGster: efficient selection of LD tag SNPs in single or multiple populations.
#@Zongli Xu,Norman L. Kaplan,Jack A. Taylor
#t2007
#cBioinformatics
#index767400
#% 
#!
  
#*Improved detection of overrepresentation of Gene-Ontology annotations with parent-child analysis.
#@Steffen Grossmann,Sebastian Bauer,Peter N. Robinson,Martin Vingron
#t2007
#cBioinformatics
#index767401
#% 
#!
  
#*Mining co-regulated gene profiles for the detection of functional associations in gene expression data.
#@Attila Gyenesei,Ulrich Wagner,Simon Barkow-Oesterreicher,Etzard Stolte,Ralph Schlapbach
#t2007
#cBioinformatics
#index767402
#% 
#!
  
#*Exploring sequence-structure relationships in the tyrosine kinome space: functional classification of the binding specificity mechanisms for cancer therapeutics.
#@Gennady Verkhivker
#t2007
#cBioinformatics
#index767403
#% 
#!
  
#*T-Pile - a package for thermodynamic calculations for biomolecules.
#@Dominik Gront,Andrzej Kolinski
#t2007
#cBioinformatics
#index767404
#% 
#!
  
#*Estimating parameters and hidden variables in non-linear state-space models based on ODEs for biological networks inference.
#@Minh Quach,Nicolas Brunel,Florence d'Alché-Buc
#t2007
#cBioinformatics
#index767405
#% 
#!
  
#*CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure.
#@Mattias Jakobsson,Noah A. Rosenberg
#t2007
#cBioinformatics
#index767406
#% 
#!
  
#*Phenotypic clustering of yeast mutants based on kinetochore microtubule dynamics.
#@Khuloud Jaqaman,Jonas F. Dorn,E. Marco,Peter K. Sorger,Gaudenz Danuser
#t2007
#cBioinformatics
#index767407
#% 
#!
  
#*OSCAR: One-class SVM for accurate recognition of -elements.
#@Bo Jiang,Michael Q. Zhang,Xuegong Zhang
#t2007
#cBioinformatics
#index767408
#% 
#!
  
#*Construction of an open-access database that integrates cross-reference information from the transcriptome and proteome of immune cells.
#@Atsushi Hijikata,Hiroshi Kitamura,Yayoi Kimura,Ryo Yokoyama,Yuichi Aiba,Yanyuan Bao,Shigeharu Fujita,Koji Hase,Shohei Hori,Yasuyuki Ishii,Osami Kanagawa,Hiroshi Kawamoto,Kazuya Kawano,Haruhiko Koseki,Masato Kubo,Ai Kurita-Miki,Tomohiro Kurosaki,Kyoko Masuda,Mitsumasa Nakata,Keisuke Oboki,Hiroshi Ohno,Mariko Okamoto,Yoshimichi Okayama,Jiyang O-Wang,Hirohisa Saito,Takashi Saito,Machie Sakuma,Katsuaki Sato,Kaori Sato,Ken-ichiro Seino,Ruka Setoguchi,Yuki Tamura,Masato Tanaka,Masaru Taniguchi,Ichiro Taniuchi,Annabelle Teng,Takeshi Watanabe,Hiroshi Watarai,Sho Yamasaki,Osamu Ohara
#t2007
#cBioinformatics
#index767409
#% 
#!
  
#*Evaporative cooling feature selection for genotypic data involving interactions.
#@Brett A. McKinney,David M. Reif,Bill C. White,James E. Crowe Jr.,Jason H. Moore
#t2007
#cBioinformatics
#index767410
#% 
#!
  
#*MODELER4SIMCOAL2: A user-friendly, extensible modeler of demography and linked loci for coalescent simulations.
#@Tiago Antao,Albano Beja-Pereira,Gordon Luikart
#t2007
#cBioinformatics
#index767411
#% 
#!
  
#*An efficient strategy for extensive integration of diverse biological data for protein function prediction.
#@Hon Nian Chua,Wing-Kin Sung,Limsoon Wong
#t2007
#cBioinformatics
#index767412
#% 
#!
  
#*A network-based method for target selection in metabolic networks.
#@Roger Guimerà,Marta Sales-Pardo,Luis A. Nunes Amaral
#t2007
#cBioinformatics
#index767413
#% 
#!
  
#*DoriC: a database of regions in bacterial genomes.
#@Feng Gao,Chun-Ting Zhang
#t2007
#cBioinformatics
#index767414
#% 
#!
  
#*Simple and fast alignment of metabolic pathways by exploiting local diversity.
#@Sebastian Wernicke,Florian Rasche
#t2007
#cBioinformatics
#index767415
#% 
#!
  
#*Metal reduction kinetics in .
#@Raman Lall,Julie Mitchell
#t2007
#cBioinformatics
#index767416
#% 
#!
  
#*Hierarchical tree snipping: clustering guided by prior knowledge.
#@Dikla Dotan-Cohen,Avraham A. Melkman,Simon Kasif
#t2007
#cBioinformatics
#index767417
#% 
#!
  
#*Flavitrack: an annotated database of flavivirus sequences.
#@Milind Misra,Catherine H. Schein
#t2007
#cBioinformatics
#index767418
#% 
#!
  
#*Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes.
#@Sangeeta B. English,Atul J. Butte
#t2007
#cBioinformatics
#index767419
#% 
#!
  
#*CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data.
#@Hui Zhao,Kristof Engelen,Bart De Moor,Kathleen Marchal
#t2007
#cBioinformatics
#index767420
#% 
#!
  
#*The global trace graph, a novel paradigm for searching protein sequence databases.
#@Andreas Heger,Swapan Mallick,Christopher Andrew Wilton,Liisa Holm
#t2007
#cBioinformatics
#index767421
#% 
#!
  
#*The Cytochrome P450 Engineering Database: a navigation and prediction tool for the cytochrome P450 protein family.
#@Markus Fischer,Michael Knoll,Demet Sirim,Florian Wagner,Sonja Funke,Jürgen Pleiss
#t2007
#cBioinformatics
#index767422
#% 
#!
  
#*Phylocomposer and phylodirector: analysis and visualization of transducer indel models.
#@Ian Holmes
#t2007
#cBioinformatics
#index767423
#% 
#!
  
#*Predicting functionally important residues from sequence conservation.
#@John A. Capra,Mona Singh
#t2007
#cBioinformatics
#index767424
#% 
#!
  
#*Classification of small molecules by two- and three-dimensional decomposition kernels.
#@Alessio Ceroni,Fabrizio Costa,Paolo Frasconi
#t2007
#cBioinformatics
#index767425
#% 
#!
  
#*Moderated statistical tests for assessing differences in tag abundance.
#@Mark D. Robinson,Gordon K. Smyth
#t2007
#cBioinformatics
#index767426
#% 
#!
  
#*Detecting high-order interactions of single nucleotide polymorphisms using genetic programming.
#@Robin Nunkesser,Thorsten Bernholt,Holger Schwender,Katja Ickstadt,Ingo Wegener
#t2007
#cBioinformatics
#index767427
#% 
#!
  
#*Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process.
#@Laura Elo,Henna Järvenpää,Matej Oresic,Riitta Lahesmaa,Tero Aittokallio
#t2007
#cBioinformatics
#index767428
#% 
#!
  
#*Identification and visualization of cage-shaped proteins.
#@Min Hu,Junhui Wang,Qunsheng Peng
#t2007
#cBioinformatics
#index767429
#% 
#!
  
#*PIP: a database of potential intron polymorphism markers.
#@Long Yang,Gulei Jin,Xiangqian Zhao,Yan Zheng,Zhaohua Xu,Weiren Wu
#t2007
#cBioinformatics
#index767430
#% 
#!
  
#*Evolutionary analysis of enzymes using Chisel.
#@Alexis A. Rodriguez,Tanuja Bompada,Mustafa H. Syed,Parantu K. Shah,Natalia Maltsev
#t2007
#cBioinformatics
#index767431
#% 
#!
  
#*MareyMap: an R-based tool with graphical interface for estimating recombination rates.
#@Clément Rezvoy,Delphine Charif,Laurent Gueguen,Gabriel A. B. Marais
#t2007
#cBioinformatics
#index767432
#% 
#!
  
#*IGG: A tool to integrate GeneChips for genetic studies.
#@M.-X. Li,L. Jiang,S.-L. Ho,Y.-Q. Song,Pak Chung Sham
#t2007
#cBioinformatics
#index767433
#% 
#!
  
#*Simulating association studies: a data-based resampling method for candidate regions or whole genome scans.
#@Fred A. Wright,Hanwen Huang,Xiaojun Guan,Kevin Gamiel,Clark D. Jeffries,William T. Barry,Fernando Pardo-Manuel de Villena,Patrick F. Sullivan,Kirk C. Wilhelmsen,Fei Zou
#t2007
#cBioinformatics
#index767434
#% 
#!
  
#*2D NMR metabonomic analysis: a novel method for automated peak alignment.
#@Ming Zheng,Peng Lu,Yanzhou Liu,Joseph Pease,Jonathan Usuka,Guochun Liao,Gary Peltz
#t2007
#cBioinformatics
#index767435
#% 
#!
  
#*miniTUBA: medical inference by network integration of temporal data using Bayesian analysis.
#@Zuoshuang Xiang,Rebecca M. Minter,Xiaoming Bi,Peter J. Woolf,Yongqun He
#t2007
#cBioinformatics
#index767436
#% 
#!
  
#*Mining biological networks for unknown pathways.
#@Ali Cakmak,Gultekin Özsoyoglu
#t2007
#cBioinformatics
#index767437
#% 
#!
  
#*CASVM: web server for SVM-based prediction of caspase substrates cleavage sites.
#@Lawrence J. K. Wee,Tin Wee Tan,Shoba Ranganathan
#t2007
#cBioinformatics
#index767438
#% 
#!
  
#*CONSORF: a consensus prediction system for prokaryotic coding sequences.
#@Sungsoo Kang,Sung-Jin Yang,Sangsoo Kim,Jong Bhak
#t2007
#cBioinformatics
#index767439
#% 
#!
  
#*Alvira: comparative genomics of viral strains.
#@François Enault,Romain Fremez,Eric Baranowski,Thomas Faraut
#t2007
#cBioinformatics
#index767440
#% 
#!
  
#*Comparative modeling without implicit sequence alignments.
#@Andrzej Kolinski,Dominik Gront
#t2007
#cBioinformatics
#index767441
#% 
#!
  
#*Detection of eQTL modules mediated by activity levels of transcription factors.
#@Wei Sun,Tianwei Yu,Ker-Chau Li
#t2007
#cBioinformatics
#index767442
#% 
#!
  
#*Data-based identifiability analysis of non-linear dynamical models.
#@S. Hengl,C. Kreutz,Jens Timmer,Thomas Maiwald
#t2007
#cBioinformatics
#index767443
#% 
#!
  
#*AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.
#@Hongfang Liu,Barry Zeeberg,Gang Qu,Akif Günes Koru,Alessandro Ferrucci,Ari B. Kahn,Michael C. Ryan,Antej Nuhanovic,Peter J. Munson,William C. Reinhold,David W. Kane,John N. Weinstein
#t2007
#cBioinformatics
#index767444
#% 
#!
  
#*Improved model-based, platform-independent feature extraction for mass spectrometry.
#@Karin Noy,Daniel P. Fasulo
#t2007
#cBioinformatics
#index767445
#% 
#!
  
#*BLISS 2.0: a web-based tool for predicting conserved regulatory modules in distantly-related orthologous sequences.
#@Hailong Meng,Arunava Banerjee,Lei Zhou
#t2007
#cBioinformatics
#index767446
#% 
#!
  
#*MSQT for choosing SNP assays from multiple DNA alignments.
#@Norman Warthmann,Joffrey Fitz,Detlef Weigel
#t2007
#cBioinformatics
#index767447
#% 
#!
  
#*Persistent voids: a new structural metric for membrane fusion.
#@Peter M. Kasson,Afra Zomorodian,Sanghyun Park,Nina Singhal,Leonidas J. Guibas,Vijay S. Pande
#t2007
#cBioinformatics
#index767448
#% 
#!
  
#*RefPlus: an R package extending the RMA Algorithm.
#@Chris Harbron,Kai-Ming Chang,Marie C. South
#t2007
#cBioinformatics
#index767449
#% 
#!
  
#*Meta-analysis of gene expression data: a predictor-based approach.
#@Irit Fishel,Alon Kaufman,Eytan Ruppin
#t2007
#cBioinformatics
#index767450
#% 
#!
  
#*PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra.
#@Franz F. Roos,Riko Jacob,Jonas Grossmann,Bernd Fischer,Joachim M. Buhmann,Wilhelm Gruissem,Sacha Baginsky,Peter Widmayer
#t2007
#cBioinformatics
#index767451
#% 
#!
  
#*Electronically subtracting expression patterns from a mixed cell population.
#@Mark M. Gosink,Howard T. Petrie,Nicholas F. Tsinoremas
#t2007
#cBioinformatics
#index767452
#% 
#!
  
#*Genomic mutation consequence calculator.
#@John E. Major
#t2007
#cBioinformatics
#index767453
#% 
#!
  
#*MAnGO: an interactive R-based tool for two-colour microarray analysis.
#@Laetitia Marisa,Jean-Laurent Ichanté,Nancie Reymond,Lawrence Aggerbeck,Hervé Delacroix,Marie-Hélène Mucchielli-Giorgi
#t2007
#cBioinformatics
#index767454
#% 
#!
  
#*Significance analysis of groups of genes in expression profiling studies.
#@James J. Chen,Taewon Lee,Robert R. Delongchamp,Tao Chen,Chen-An Tsai
#t2007
#cBioinformatics
#index767455
#% 
#!
  
#*Identification of potential HIV-1 targets of minocycline.
#@Ekachai Jenwitheesuk,Ram Samudrala
#t2007
#cBioinformatics
#index767456
#% 
#!
  
#*Conformational analysis of alternative protein structures.
#@Francisco S. Domingues,Jörg Rahnenführer,Thomas Lengauer
#t2007
#cBioinformatics
#index767457
#% 
#!
  
#*The Poisson Index: a new probabilistic model for protein-ligand binding site similarity.
#@J. R. Davies,R. M. Jackson,Kanti V. Mardia,C. C. Taylor
#t2007
#cBioinformatics
#index767458
#% 
#!
  
#*Fun&Co: identification of key functional differences in transcriptomes.
#@Giacomo Gamberoni,Evelina Lamma,Gianluca Lodo,Jlenia Marchesini,Nicoletta Mascellani,Simona Rossi,Sergio Storari,Luca Tagliavini,Stefano Volinia
#t2007
#cBioinformatics
#index767459
#% 
#!
  
#*Stochastic simulation GUI for biochemical networks.
#@Ravishankar Rao Vallabhajosyula,Herbert M. Sauro
#t2007
#cBioinformatics
#index767460
#% 
#!
  
#*A comparison of background correction methods for two-colour microarrays.
#@Matthew E. Ritchie,Jeremy Silver,Alicia Oshlack,Melissa Holmes,Dileepa S. Diyagama,Andrew J. Holloway,Gordon K. Smyth
#t2007
#cBioinformatics
#index767461
#% 
#!
  
#*Learning string similarity measures for gene/protein name dictionary look-up using logistic regression.
#@Yoshimasa Tsuruoka,John McNaught,Jun-ichi Tsujii,Sophia Ananiadou
#t2007
#cBioinformatics
#index767462
#% 
#!
  
#*Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs.
#@Mohammad Tabrez Anwar Shamim,Mohammad Anwaruddin,Hampapathalu A. Nagarajaram
#t2007
#cBioinformatics
#index767463
#% 
#!
  
#*Pepitope: epitope mapping from affinity-selected peptides.
#@Itay Mayrose,Osnat Penn,Elana Erez,Nimrod D. Rubinstein,Tomer Shlomi,Natalia Tarnovitski Freund,Erez M. Bublil,Eytan Ruppin,Roded Sharan,Jonathan M. Gershoni,Eric Martz,Tal Pupko
#t2007
#cBioinformatics
#index767464
#% 
#!
  
#*Mining experimental evidence of molecular function claims from the literature.
#@Colleen E. Crangle,J. Michael Cherry,Eurie L. Hong,Alex Zbyslaw
#t2007
#cBioinformatics
#index767465
#% 
#!
  
#*Con-Struct Map: a comparative contact map analysis tool.
#@Jo-Lan Chung,John E. Beaver,Eric D. Scheeff,Philip E. Bourne
#t2007
#cBioinformatics
#index767466
#% 
#!
  
#*VIPER: an advanced software package to support high-throughput LC-MS peptide identification.
#@Matthew E. Monroe,Nikola Tolic,Navdeep Jaitly,Jason L. Shaw,Joshua N. Adkins,Richard D. Smith
#t2007
#cBioinformatics
#index767467
#% 
#!
  
#*FASPAD: fast signaling pathway detection.
#@Falk Hüffner,Sebastian Wernicke,Thomas Zichner
#t2007
#cBioinformatics
#index767468
#% 
#!
  
#*CellMontage: similar expression profile search server.
#@Wataru Fujibuchi,Larisa Kiseleva,Takeaki Taniguchi,Hajime Harada,Paul Horton
#t2007
#cBioinformatics
#index767469
#% 
#!
  
#*Selection and validation of normalization methods for c-DNA microarrays using within-array replications.
#@Jianqing Fan,Yue Niu
#t2007
#cBioinformatics
#index767470
#% 
#!
  
#*OBO-Edit - an ontology editor for biologists.
#@John Day-Richter,Midori A. Harris,Melissa Haendel,Suzanna Lewis
#t2007
#cBioinformatics
#index767471
#% 
#!
  
#*Madeline 2.0 PDE: a new program for local and web-based pedigree drawing.
#@Edward H. Trager,Ritu Khanna,Adrian Marrs,Lawrence Siden,Kari E. H. Branham,Anand Swaroop,Julia E. Richards
#t2007
#cBioinformatics
#index767472
#% 
#!
  
#*Fast model-based protein homology detection without alignment.
#@Sepp Hochreiter,Martin Heusel,Klaus Obermayer
#t2007
#cBioinformatics
#index767473
#% 
#!
  
#*DIA-MCIS: an importance sampling network randomizer for network motif discovery and other topological observables in transcription networks.
#@D. Fusco,B. Bassetti,P. Jona,M. Cosentino Lagomarsino
#t2007
#cBioinformatics
#index767474
#% 
#!
  
#*An efficient method for the detection and elimination of systematic error in high-throughput screening.
#@Vladimir Makarenkov,Pablo Zentilli,Dmytro Kevorkov,Andrei V. Gagarin,Nathalie Malo,Robert Nadon
#t2007
#cBioinformatics
#index767475
#% 
#!
  
#*Polyketide synthase genes and the natural products potential of .
#@Jurica Zucko,N. Skunca,Tomaz Curk,Blaz Zupan,Paul F. Long,John Cullum,R. H. Kessin,Daslav Hranueli
#t2007
#cBioinformatics
#index767476
#% 
#!
  
#*A simple shape characteristic of protein-protein recognition.
#@George Nicola,Ilya A. Vakser
#t2007
#cBioinformatics
#index767477
#% 
#!
  
#*Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases.
#@Duccio Cavalieri,Cinzia Castagnini,Simona Toti,Karolina Maciag,Thomas Kelder,Luca Gambineri,Samuele Angioli,Piero Dolara
#t2007
#cBioinformatics
#index767478
#% 
#!
  
#*MSVM-RFE: extensions of SVM-RFE for multiclass gene selection on DNA microarray data.
#@Xin Zhou,David P. Tuck
#t2007
#cBioinformatics
#index767479
#% 
#!
  
#*BiasViz: visualization of amino acid biased regions in protein alignments.
#@Matthew R. Huska,Henrik Buschmann,Miguel A. Andrade-Navarro
#t2007
#cBioinformatics
#index767480
#% 
#!
  
#*Time-varying modeling of gene expression regulatory networks using the wavelet dynamic vector autoregressive method.
#@André Fujita,João Ricardo Sato,Humberto Miguel Garay-Malpartida,Pedro Alberto Morettin,Mari Cleide Sogayar,Carlos Eduardo Ferreira
#t2007
#cBioinformatics
#index767481
#% 
#!
  
#*A quantitative model for linking two disparate sets of articles in MEDLINE.
#@Vetle I. Torvik,Neil R. Smalheiser
#t2007
#cBioinformatics
#index767482
#% 
#!
  
#*ChemDB update - full-text search and virtual chemical space.
#@Jonathan H. Chen,Erik Linstead,Sanjay Joshua Swamidass,Dennis Wang,Pierre Baldi
#t2007
#cBioinformatics
#index767483
#% 
#!
  
#*LICORN: learning cooperative regulation networks from gene expression data.
#@Mohamed Elati,Pierre Neuvial,Monique Bolotin-Fukuhara,Emmanuel Barillot,François Radvanyi,Céline Rouveirol
#t2007
#cBioinformatics
#index767484
#% 
#!
  
#*Assortative mixing in Protein Contact Networks and protein folding kinetics.
#@Ganesh Bagler,Somdatta Sinha
#t2007
#cBioinformatics
#index767485
#% 
#!
  
#*Ensemble learning of genetic networks from time-series expression data.
#@Dougu Nam,Sung Ho Yoon,Jihyun F. Kim
#t2007
#cBioinformatics
#index767486
#% 
#!
  
#*MeTaDoR: a comprehensive resource for membrane targeting domains and their host proteins.
#@Nitin Bhardwaj,Robert V. Stahelin,Guijun Zhao,Wonhwa Cho,Hui Lu
#t2007
#cBioinformatics
#index767487
#% 
#!
  
#*OSLay: optimal syntenic layout of unfinished assemblies.
#@Daniel C. Richter,Stephan C. Schuster,Daniel H. Huson
#t2007
#cBioinformatics
#index767488
#% 
#!
  
#*: a desktop application for Gene Set Enrichment Analysis.
#@Aravind Subramanian,Heidi Kuehn,Joshua Gould,Pablo Tamayo,Jill P. Mesirov
#t2007
#cBioinformatics
#index767489
#% 
#!
  
#*Metabolic systems cost-benefit analysis for interpreting network structure and regulation - Erratum.
#@Ross P. Carlson
#t2007
#cBioinformatics
#index767490
#% 
#!
  
#*DNA reference alignment benchmarks based on tertiary structure of encoded proteins.
#@Hyrum Carroll,Wesley A. Beckstead,Timothy O'Connor,Mark T. W. Ebbert,Mark J. Clement,Quinn Snell,David A. McClellan
#t2007
#cBioinformatics
#index767491
#% 
#!
  
#*OMA Browser - Exploring orthologous relations across 352 complete genomes.
#@Adrian Schneider,Christophe Dessimoz,Gaston H. Gonnet
#t2007
#cBioinformatics
#index767492
#% 
#!
  
#*Feature construction from synergic pairs to improve microarray-based classification.
#@Blaise Hanczar,Jean-Daniel Zucker,Corneliu Henegar,Lorenza Saitta
#t2007
#cBioinformatics
#index767493
#% 
#!
  
#*Secondary structure based analysis and classification of biological interfaces: identification of binding motifs in protein-protein interactions.
#@Mainak Guharoy,Pinak Chakrabarti
#t2007
#cBioinformatics
#index767494
#% 
#!
  
#*Extracting three-way gene interactions from microarray data.
#@Jiexin Zhang,Yuan Ji,Li Zhang
#t2007
#cBioinformatics
#index767495
#% 
#!
  
#*pIPHULA - parallel inference of population parameters using a likelihood approach.
#@Heiko A. Schmidt,Arndt von Haeseler,Jutta Buschbom
#t2007
#cBioinformatics
#index767496
#% 
#!
  
#*BioText Search Engine: beyond abstract search.
#@Marti A. Hearst,Anna Divoli,Harendra Guturu,Alex Ksikes,Preslav Nakov,Michael A. Wooldridge,Jerry Ye
#t2007
#cBioinformatics
#index767497
#% 
#!
  
#*Detection of potential enzyme targets by metabolic modelling and optimization: Application to a simple enzymopathy.
#@Julio Vera,Raul Curto,Marta Cascante,Néstor V. Torres
#t2007
#cBioinformatics
#index767498
#% 
#!
  
#*: comparison of clusters between phylogenetic trees made easy.
#@John Archer,David L. Robertson
#t2007
#cBioinformatics
#index767499
#% 
#!
  
#*Incorporating prior knowledge of predictors into penalized classifiers with multiple penalty terms.
#@Feng Tai,Wei Pan
#t2007
#cBioinformatics
#index767500
#% 
#!
  
#*TASSEL: software for association mapping of complex traits in diverse samples.
#@Peter J. Bradbury,Zhiwu Zhang,Dallas E. Kroon,Terry M. Casstevens,Yogesh Ramdoss,Edward S. Buckler
#t2007
#cBioinformatics
#index767501
#% 
#!
  
#*PALMA: mRNA to genome alignments using large margin algorithms.
#@Uta Schulze,Bettina Hepp,Cheng Soon Ong,Gunnar Rätsch
#t2007
#cBioinformatics
#index767502
#% 
#!
  
#*Bioinformatics software for biologists in the genomics era.
#@Sudhir Kumar,Joel Dudley
#t2007
#cBioinformatics
#index767503
#% 
#!
  
#*The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.
#@Lukasz Salwínski,David Eisenberg
#t2007
#cBioinformatics
#index767504
#% 
#!
  
#*Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone.
#@Adam James Reid,Corin Yeats,Christine A. Orengo
#t2007
#cBioinformatics
#index767505
#% 
#!
  
#*, a stochastic cell lineage simulator.
#@Andre S. Ribeiro,Daniel A. Charlebois,Jason Lloyd-Price
#t2007
#cBioinformatics
#index767506
#% 
#!
  
#*Different packing of external residues can explain differences in the thermostability of proteins from thermophilic and mesophilic organisms.
#@Anna V. Glyakina,Sergiy O. Garbuzynskiy,Michail Yu. Lobanov,Oxana V. Galzitskaya
#t2007
#cBioinformatics
#index767507
#% 
#!
  
#*An evaluation of automated homology modelling methods at low target-template sequence similarity.
#@James A. R. Dalton,Richard M. Jackson
#t2007
#cBioinformatics
#index767508
#% 
#!
  
#*Identification of compositionally distinct regions in genomes using the centroid method.
#@Issaac Rajan,Sarang Aravamuthan,Sharmila S. Mande
#t2007
#cBioinformatics
#index767509
#% 
#!
  
#*APID2NET: unified interactome graphic analyzer.
#@Juan Hernandez-Toro,Carlos Prieto,Javier De Las Rivas
#t2007
#cBioinformatics
#index767510
#% 
#!
  
#*Query-driven module discovery in microarray data.
#@Thomas Dhollander,Qizheng Sheng,Karen Lemmens,Bart De Moor,Kathleen Marchal,Yves Moreau
#t2007
#cBioinformatics
#index767511
#% 
#!
  
#*Structure-based calculation of drug efficiency indices.
#@Csaba Hetényi,Uko Maran,Alfonso T. García-Sosa,Mati Karelson
#t2007
#cBioinformatics
#index767512
#% 
#!
  
#*A parsimonious threshold-independent protein feature selection method through the area under receiver operating characteristic curve.
#@Zhanfeng Wang,Yuan-chin Ivan Chang,Zhiliang Ying,Liang Zhu,Yaning Yang
#t2007
#cBioinformatics
#index767513
#% 
#!
  
#*Robust smooth segmentation approach for array CGH data analysis.
#@Jian Huang,Arief Gusnanto,Kathleen O'Sullivan,Johan Staaf,Åke Borg,Yudi Pawitan
#t2007
#cBioinformatics
#index767514
#% 
#!
  
#*structureViz: linking Cytoscape and UCSF Chimera.
#@John H. Morris,Conrad C. Huang,Patricia C. Babbitt,Thomas E. Ferrin
#t2007
#cBioinformatics
#index767515
#% 
#!
  
#*An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization.
#@Ziliang Qian,Lingyi Lu,Xiao-Jun Liu,Yu-Dong Cai,Yixue Li
#t2007
#cBioinformatics
#index767516
#% 
#!
  
#*LibSBML: an API Library for SBML.
#@Benjamin J. Bornstein,Sarah M. Keating,Akiya Jouraku,Michael Hucka
#t2008
#cBioinformatics
#index767517
#% 
#!
  
#*Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure.
#@Jiangning Song,Zheng Yuan,Hao Tan,Thomas Huber,Kevin Burrage
#t2007
#cBioinformatics
#index767518
#% 
#!
  
#*Gene expression: Quick calculation for sample size while controlling false discovery rate with application to microarray analysis.
#@Peng Liu,J. T. Gene Hwang
#t2008
#cBioinformatics
#index767519
#% 
#!
  
#*Gene Set Expression Comparison kit for BRB-ArrayTools.
#@Xiaojiang Xu,Yingdong Zhao,Richard Simon
#t2008
#cBioinformatics
#index767520
#% 
#!
  
#*Kernel approaches for genic interaction extraction.
#@Seonho Kim,Juntae Yoon,Jihoon Yang
#t2008
#cBioinformatics
#index767521
#% 
#!
  
#*vbmp: Variational Bayesian Multinomial Probit Regression for multi-class classification in R.
#@Nicola Lama,Mark Girolami
#t2008
#cBioinformatics
#index767522
#% 
#!
  
#*Independent component analysis for the extraction of reliable protein signal profiles from MALDI-TOF mass spectra.
#@Dante Mantini,Francesca Petrucci,Piero Del Boccio,Damiana Pieragostino,Marta Di Nicola,Alessandra Lugaresi,Giorgio Federici,Paolo Sacchetta,Carmine Di Ilio,Andrea Urbani
#t2008
#cBioinformatics
#index767523
#% 
#!
  
#*Monte Carlo feature selection for supervised classification.
#@Michal Draminski,Alvaro Rada-Iglesias,Stefan Enroth,Claes Wadelius,Jacek Koronacki,Henryk Jan Komorowski
#t2008
#cBioinformatics
#index767524
#% 
#!
  
#*Estimation of an fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment.
#@Koen Deforche,Ricardo Camacho,Kristel Van Laethem,Philippe Lemey,Andrew Rambaut,Yves Moreau,Anne-Mieke Vandamme
#t2008
#cBioinformatics
#index767525
#% 
#!
  
#*Novel cell segmentation and online SVM for cell cycle phase identification in automated microscopy.
#@Meng Wang,Xiaobo Zhou,Fuhai Li,Jeremy Huckins,Randall W. King,Stephen T. C. Wong
#t2008
#cBioinformatics
#index767526
#% 
#!
  
#*Correcting for gene-specific dye bias in DNA microarrays using the method of maximum likelihood.
#@Ryan M. Kelley,Hoda Feizi,Trey Ideker
#t2008
#cBioinformatics
#index767527
#% 
#!
  
#*Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting.
#@Kai Ye,K. Anton Feenstra,Jaap Heringa,Adriaan P. IJzerman,Elena Marchiori
#t2008
#cBioinformatics
#index767528
#% 
#!
  
#*Computational epigenetics.
#@Christoph Bock,Thomas Lengauer
#t2008
#cBioinformatics
#index767529
#% 
#!
  
#*Determination and validation of principal gene products.
#@Michael L. Tress,Jan-Jaap Wesselink,Adam Frankish,Gonzalo López,Nick Goldman,Ari Löytynoja,Tim Massingham,Fabio Pardi,Simon Whelan,Jennifer Harrow,Alfonso Valencia
#t2008
#cBioinformatics
#index767530
#% 
#!
  
#*Fast and accurate identification of semi-tryptic peptides in shotgun proteomics.
#@Pedro Alves,Randy J. Arnold,David E. Clemmer,Yixue Li,James P. Reilly,Quanhu Sheng,Haixu Tang,Zhiyin Xun,Rong Zeng,Predrag Radivojac
#t2008
#cBioinformatics
#index767531
#% 
#!
  
#*i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles.
#@Cedric Simillion,Koen Janssens,Lieven Sterck,Yves Van de Peer
#t2008
#cBioinformatics
#index767532
#% 
#!
  
#*Uniformization for sampling realizations of Markov processes: applications to Bayesian implementations of codon substitution models.
#@Nicolas Rodrigue,Hervé Philippe,Nicolas Lartillot
#t2008
#cBioinformatics
#index767533
#% 
#!
  
#*Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control.
#@Aalt D. J. van Dijk,Cajo J. F. ter Braak,R. G. Immink,G. C. Angenent,Roeland C. H. J. van Ham
#t2008
#cBioinformatics
#index767534
#% 
#!
  
#*SNPtoGO: characterizing SNPs by enriched GO terms.
#@Daniel F. Schwarz,Oliver Hädicke,Jeanette Erdmann,Andreas Ziegler,Daniel Bayer,Steffen Möller
#t2008
#cBioinformatics
#index767535
#% 
#!
  
#*MetaNetter: inference and visualization of high-resolution metabolomic networks.
#@Fabien Jourdan,Rainer Breitling,Michael P. Barrett,David Gilbert
#t2008
#cBioinformatics
#index767536
#% 
#!
  
#*GEIGER: investigating evolutionary radiations.
#@Luke J. Harmon,Jason T. Weir,Chad D. Brock,Richard E. Glor,Wendell Challenger
#t2008
#cBioinformatics
#index767537
#% 
#!
  
#*Assembly reconciliation.
#@Aleksey V. Zimin,Douglas R. Smith,Granger G. Sutton,James A. Yorke
#t2008
#cBioinformatics
#index767538
#% 
#!
  
#*Identification of linked regions using high-density SNP genotype data in linkage analysis.
#@Guohui Lin,Zhanyong Wang,Lusheng Wang,Yu-Lung Lau,Wanling Yang
#t2008
#cBioinformatics
#index767539
#% 
#!
  
#*Synthetic microarray data generation with RANGE and NEMO.
#@James Long,Mitchell Roth
#t2008
#cBioinformatics
#index767540
#% 
#!
  
#*A profile-based deterministic sequential Monte Carlo algorithm for motif discovery.
#@Kuo-ching Liang,Xiaodong Wang,Dimitris Anastassiou
#t2008
#cBioinformatics
#index767541
#% 
#!
  
#*GlobalANCOVA: exploration and assessment of gene group effects.
#@Manuela Hummel,Reinhard Meister,Ulrich Mansmann
#t2008
#cBioinformatics
#index767542
#% 
#!
  
#*Prediction of neuropeptide cleavage sites in insects.
#@Bruce R. Southey,Jonathan V. Sweedler,Sandra L. Rodriguez-Zas
#t2008
#cBioinformatics
#index767543
#% 
#!
  
#*Quantitative analysis of robustness and fragility in biological networks based on feedback dynamics.
#@Yung-Keun Kwon,Kwang-Hyun Cho
#t2008
#cBioinformatics
#index767544
#% 
#!
  
#*Automated image alignment for 2D gel electrophoresis in a high-throughput proteomics pipeline.
#@Andrew W. Dowsey,Michael J. Dunn,Guang-Zhong Yang
#t2008
#cBioinformatics
#index767545
#% 
#!
  
#*Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments.
#@Narcis Fernandez-Fuentes,Brajesh Kumar Rai,Carlos J. Madrid-Aliste,J. Eduardo Fajardo,András Fiser
#t2007
#cBioinformatics
#index767546
#% 
#!
  
#*MANTIS: a phylogenetic framework for multi-species genome comparisons.
#@Athanasia C. Tzika,Raphaël Helaers,Yves Van de Peer,Michel C. Milinkovitch
#t2008
#cBioinformatics
#index767547
#% 
#!
  
#*PedVizApi: a Java API for the interactive, visual analysis of extended pedigrees.
#@Christian Fuchsberger,Mario Falchi,Lukas Forer,Peter P. Pramstaller
#t2008
#cBioinformatics
#index767548
#% 
#!
  
#*Petri net-based method for the analysis of the dynamics of signal propagation in signaling pathways.
#@Simon Hardy,Pierre N. Robillard
#t2008
#cBioinformatics
#index767549
#% 
#!
  
#*Text processing through Web services: calling Whatizit.
#@Dietrich Rebholz-Schuhmann,Miguel Arregui,Sylvain Gaudan,Harald Kirsch,Antonio Jimeno-Yepes
#t2008
#cBioinformatics
#index767550
#% 
#!
  
#*Analysis of a Gibbs sampler method for model-based clustering of gene expression data.
#@Anagha Joshi,Yves Van de Peer,Tom Michoel
#t2008
#cBioinformatics
#index767551
#% 
#!
  
#*Fast protein fold estimation from NMR-derived distance restraints.
#@Annamária F. Ángyán,András Perczel,Sándor Pongor,Zoltán Gáspári
#t2008
#cBioinformatics
#index767552
#% 
#!
  
#*Estimating node degree in bait-prey graphs.
#@Denise Scholtens,Tony Chiang,Wolfgang Huber,Robert Gentleman
#t2008
#cBioinformatics
#index767553
#% 
#!
  
#*Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor.
#@Jean-Loup Faulon,Milind Misra,Shawn Martin,Ken Sale,Rajat Sapra
#t2008
#cBioinformatics
#index767554
#% 
#!
  
#*NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks.
#@Sema Kachalo,Ranran Zhang,Eduardo D. Sontag,Réka Albert,Bhaskar DasGupta
#t2008
#cBioinformatics
#index767555
#% 
#!
  
#*Automated manipulation of systems biology models using libSBML within Taverna workflows.
#@Peter Li,Tom Oinn,Stian Soiland,Douglas B. Kell
#t2008
#cBioinformatics
#index767556
#% 
#!
  
#*SnoReport: computational identification of snoRNAs with unknown targets.
#@Jana Hertel,Ivo L. Hofacker,Peter F. Stadler
#t2008
#cBioinformatics
#index767557
#% 
#!
  
#*An integrated system for studying residue coevolution in proteins.
#@Kevin Y. Yip,Prianka Patel,Philip M. Kim,Donald M. Engelman,Drew McDermott,Mark Gerstein
#t2008
#cBioinformatics
#index767558
#% 
#!
  
#*Identification of phylogenetically conserved microRNA -regulatory elements across 12 species.
#@Xiaowo Wang,Jin Gu,Michael Q. Zhang,Yanda Li
#t2008
#cBioinformatics
#index767559
#% 
#!
  
#*Probabilistic path ranking based on adjacent pairwise coexpression for metabolic transcripts analysis.
#@Ichigaku Takigawa,Hiroshi Mamitsuka
#t2008
#cBioinformatics
#index767560
#% 
#!
  
#*Algebraic stability indicators for ranked lists in molecular profiling.
#@Giuseppe Jurman,Stefano Merler,Annalisa Barla,Silvano Paoli,Antonio Galea,Cesare Furlanello
#t2008
#cBioinformatics
#index767561
#% 
#!
  
#*The SBML discrete stochastic models test suite.
#@Thomas W. Evans,Colin S. Gillespie,Darren J. Wilkinson
#t2008
#cBioinformatics
#index767562
#% 
#!
  
#*Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories.
#@Da Yang,Yanhui Li,Hui Xiao,Qing Liu,Min Zhang,Jing Zhu,Wencai Ma,Chen Yao,Jing Wang,Dong Wang,Zheng Guo,Baofeng Yang
#t2008
#cBioinformatics
#index767563
#% 
#!
  
#*Straightening images.
#@Hanchuan Peng,Fuhui Long,Xiao Liu,Stuart K. Kim,Eugene W. Myers
#t2008
#cBioinformatics
#index767564
#% 
#!
  
#*Déjà vu - A study of duplicate citations in Medline.
#@Mounir Errami,Justin M. Hicks,Wayne G. Fisher,David Trusty,Jonathan D. Wren,Tara C. Long,Harold R. Garner
#t2008
#cBioinformatics
#index767565
#% 
#!
  
#*Computing topological parameters of biological networks.
#@Yassen Assenov,Fidel Ramírez,Sven-Eric Schelhorn,Thomas Lengauer,Mario Albrecht
#t2008
#cBioinformatics
#index767566
#% 
#!
  
#*RReportGenerator: automatic reports from routine statistical analysis using R.
#@Wolfgang Raffelsberger,Yannick Krause,Luc Moulinier,David Kieffer,Anne-Laure Morand,Laurent Brino,Olivier Poch
#t2008
#cBioinformatics
#index767567
#% 
#!
  
#*A hierarchical statistical model to assess the confidence of peptides and proteins inferred from tandem mass spectrometry.
#@Changyu Shen,Zhiping Wang,Ganesh Shankar,Xiang Zhang,Lang Li
#t2008
#cBioinformatics
#index767568
#% 
#!
  
#*Identification of differentially expressed gene categories in microarray studies using nonparametric multivariate analysis.
#@Dan Nettleton,Justin Recknor,James M. Reecy
#t2008
#cBioinformatics
#index767569
#% 
#!
  
#*ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences.
#@Dean Laslett,Björn Canbäck
#t2008
#cBioinformatics
#index767570
#% 
#!
  
#*Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries.
#@Unitsa Sangket,Amornrat Phongdara,Wilaiwan Chotigeat,Darran Nathan,Woo-Yeon Kim,Jong Bhak,Chumpol Ngamphiw,Sissades Tongsima,Asif M. Khan,Honghuang Lin,Tin Wee Tan
#t2008
#cBioinformatics
#index767571
#% 
#!
  
#*Clustering of change patterns using Fourier coefficients.
#@Jaehee Kim,Haseong Kim
#t2008
#cBioinformatics
#index767572
#% 
#!
  
#*GEAR: genomic enrichment analysis of regional DNA copy number changes.
#@Tae-Min Kim,Yu-Chae Jung,Mun-Gan Rhyu,Myeong Ho Jung,Yeun-Jun Chung
#t2008
#cBioinformatics
#index767573
#% 
#!
  
#*Sparse representation and Bayesian detection of genome copy number alterations from microarray data.
#@Roger Pique-Regi,Jordi Monso-Varona,Antonio Ortega,Robert C. Seeger,Timothy Triche,Shahab Asgharzadeh
#t2008
#cBioinformatics
#index767574
#% 
#!
  
#*MutaGeneSys: estimating individual disease susceptibility based on genome-wide SNP array data.
#@Julia Stoyanovich,Itsik Pe'er
#t2008
#cBioinformatics
#index767575
#% 
#!
  
#*Rfold: an exact algorithm for computing local base pairing probabilities.
#@Hisanori Kiryu,Taishin Kin,Kiyoshi Asai
#t2008
#cBioinformatics
#index767576
#% 
#!
  
#*Natural similarity measures between position frequency matrices with an application to clustering.
#@Utz J. Pape,Sven Rahmann,Martin Vingron
#t2008
#cBioinformatics
#index767577
#% 
#!
  
#*Choosing BLAST options for better detection of orthologs as reciprocal best hits.
#@Gabriel Moreno-Hagelsieb,Kristen Latimer
#t2008
#cBioinformatics
#index767578
#% 
#!
  
#*Association studies for untyped markers with TUNA.
#@Xiaoquan Wen,Dan L. Nicolae
#t2008
#cBioinformatics
#index767579
#% 
#!
  
#*The SGN comparative map viewer.
#@Lukas A. Mueller,Adri A. Mills,Beth Skwarecki,Robert M. Buels,Naama Menda,Steven D. Tanksley
#t2008
#cBioinformatics
#index767580
#% 
#!
  
#*BAGET: a web server for the effortless retrieval of prokaryotic gene context and sequence.
#@Jacques Oberto
#t2008
#cBioinformatics
#index767581
#% 
#!
  
#*A new algorithm for cluster analysis of genomic methylation: the case.
#@F. F. Vale,P. Encarnação,J. M. B. Vítor
#t2008
#cBioinformatics
#index767582
#% 
#!
  
#*TimeClust: a clustering tool for gene expression time series.
#@Paolo Magni,Fulvia Ferrazzi,Lucia Sacchi,Riccardo Bellazzi
#t2008
#cBioinformatics
#index767583
#% 
#!
  
#*A note on difficult structure alignment problems.
#@Manfred J. Sippl,Markus Wiederstein
#t2008
#cBioinformatics
#index767584
#% 
#!
  
#*Prediction of both conserved and nonconserved microRNA targets in animals.
#@Xiaowei Wang,Issam M. El Naqa
#t2008
#cBioinformatics
#index767585
#% 
#!
  
#*Efficient peptide-MHC-I binding prediction for alleles with few known binders.
#@Laurent Jacob,Jean-Philippe Vert
#t2008
#cBioinformatics
#index767586
#% 
#!
  
#*ConoServer, a database for conopeptide sequences and structures.
#@Quentin Kaas,Jan-C. Westermann,Reena Halai,Conan K. L. Wang,David J. Craik
#t2008
#cBioinformatics
#index767587
#% 
#!
  
#*OBO Explorer: an editor for open biomedical ontologies in OWL.
#@J. Stuart Aitken,Yin Chen,Jonathan Bard
#t2008
#cBioinformatics
#index767588
#% 
#!
  
#*affyGG: computational protocols for genetical genomics with Affymetrix arrays.
#@Rudi Alberts,Gonzalo Vera,Ritsert C. Jansen
#t2008
#cBioinformatics
#index767589
#% 
#!
  
#*Incorporating gene networks into statistical tests for genomic data via a spatially correlated mixture model.
#@Peng Wei,Wei Pan
#t2008
#cBioinformatics
#index767590
#% 
#!
  
#*Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction.
#@S. D. Dunn,L. M. Wahl,Gregory B. Gloor
#t2008
#cBioinformatics
#index767591
#% 
#!
  
#*COMPARE, a multi-organism system for cross-species data comparison and transfer of information.
#@David Salgado,Gregory Gimenez,François Coulier,Christophe Marcelle
#t2008
#cBioinformatics
#index767592
#% 
#!
  
#*TFBS identification based on genetic algorithm with combined representations and adaptive post-processing.
#@Tak-Ming Chan,Kwong-Sak Leung,Kin-Hong Lee
#t2008
#cBioinformatics
#index767593
#% 
#!
  
#*TOM: enhancement and extension of a tool suite for approaches to multigenic hereditary disorders.
#@Daniele Masotti,Christine Nardini,Simona Rossi,Elena Bonora,Giovanni Romeo,Stefano Volinia,Luca Benini
#t2008
#cBioinformatics
#index767594
#% 
#!
  
#*A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments.
#@Fangxin Hong,Rainer Breitling
#t2008
#cBioinformatics
#index767595
#% 
#!
  
#*Automated programming for bioinformatics algorithm deployment.
#@Gil Alterovitz,Adnaan Jiwaji,Marco Ramoni
#t2008
#cBioinformatics
#index767596
#% 
#!
  
#*Putative promoter regions of genes involved in evolutionarily conserved regulatory systems among vertebrates.
#@Shuji Fujita,Hideo Iba
#t2008
#cBioinformatics
#index767597
#% 
#!
  
#*Hybrid huberized support vector machines for microarray classification and gene selection.
#@Li Wang,Ji Zhu,Hui Zou
#t2008
#cBioinformatics
#index767598
#% 
#!
  
#*ZFIQ: a software package for zebrafish biology.
#@Tianming Liu,Jingxin Nie,Gang Li,Lei Guo,Stephen T. C. Wong
#t2008
#cBioinformatics
#index767599
#% 
#!
  
#*Successful anti-cancer drug targets able to pass FDA review demonstrate the identifiable signature distinct from the signatures of random genes and initially proposed targets.
#@Anatoly L. Mayburd,Inna Golovchikova,James L. Mulshine
#t2008
#cBioinformatics
#index767600
#% 
#!
  
#*Model-based deconvolution of genome-wide DNA binding.
#@David J. Reiss,Marc T. Facciotti,Nitin S. Baliga
#t2008
#cBioinformatics
#index767601
#% 
#!
  
#*Utility library for structural bioinformatics.
#@Dominik Gront,Andrzej Kolinski
#t2008
#cBioinformatics
#index767602
#% 
#!
  
#*KEGGanim: pathway animations for high-throughput data.
#@Priit Adler,Jüri Reimand,Jürgen Jänes,Raivo Kolde,Hedi Peterson,Jaak Vilo
#t2008
#cBioinformatics
#index767603
#% 
#!
  
#*Structural flexibility in proteins: impact of the crystal environment.
#@Konrad Hinsen
#t2008
#cBioinformatics
#index767604
#% 
#!
  
#*DECOMP - from interpreting Mass Spectrometry peaks to solving the Money Changing Problem.
#@Sebastian Böcker,Zsuzsanna Lipták,Marcel Martin,Anton Pervukhin,Henner Sudek
#t2008
#cBioinformatics
#index767605
#% 
#!
  
#*Predicting disulfide bond connectivity in proteins by correlated mutations analysis.
#@Rotem Rubinstein,András Fiser
#t2008
#cBioinformatics
#index767606
#% 
#!
  
#*Multiple testing on the directed acyclic graph of gene ontology.
#@Jelle J. Goeman,Ulrich Mansmann
#t2008
#cBioinformatics
#index767607
#% 
#!
  
#*Bioinformatics models for predicting antigenic variants of influenza A/H3N2 virus.
#@Yu-Chieh Liao,Min-Shi Lee,Chin-Yu Ko,Chao A. Hsiung
#t2008
#cBioinformatics
#index767608
#% 
#!
  
#*Discovery of candidate KEN-box motifs using Cell Cycle keyword enrichment combined with native disorder prediction and motif conservation.
#@Sushama Michael,Gilles Travé,Chenna Ramu,Claudia Chica,Toby J. Gibson
#t2008
#cBioinformatics
#index767609
#% 
#!
  
#*Statistical methods to infer cooperative binding among transcription factors in .
#@Debayan Datta,Hongyu Zhao
#t2008
#cBioinformatics
#index767610
#% 
#!
  
#*BEN: a novel domain in chromatin factors and DNA viral proteins.
#@Saraswathi Abhiman,Lakshminarayan M. Iyer,L. Aravind
#t2008
#cBioinformatics
#index767611
#% 
#!
  
#*Improved recognition of figures containing fluorescence microscope images in online journal articles using graphical models.
#@Yuntao Qian,Robert F. Murphy
#t2008
#cBioinformatics
#index767612
#% 
#!
  
#*Structural systems identification of genetic regulatory networks.
#@Hao Xiong,Yoonsuck Choe
#t2008
#cBioinformatics
#index767613
#% 
#!
  
#*Figaro: a novel statistical method for vector sequence removal.
#@James Robert White,Michael Roberts,James A. Yorke,Mihai Pop
#t2008
#cBioinformatics
#index767614
#% 
#!
  
#*A hybrid model for robust detection of transcription factor binding sites.
#@Sumedha Gunewardena,Zhaolei Zhang
#t2008
#cBioinformatics
#index767615
#% 
#!
  
#*AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics.
#@Johan A. A. Nylander,James C. Wilgenbusch,Dan L. Warren,David L. Swofford
#t2008
#cBioinformatics
#index767616
#% 
#!
  
#*The ModFOLD server for the quality assessment of protein structural models.
#@Liam J. McGuffin
#t2008
#cBioinformatics
#index767617
#% 
#!
  
#*A novel genome-scale repeat finder geared towards transposons.
#@Xuehui Li,Tamer Kahveci,A. Mark Settles
#t2008
#cBioinformatics
#index767618
#% 
#!
  
#*NetworkBLAST: comparative analysis of protein networks.
#@Maxim Kalaev,Mike Smoot,Trey Ideker,Roded Sharan
#t2008
#cBioinformatics
#index767619
#% 
#!
  
#*Colorstock, SScolor, Ratón: RNA alignment visualization tools.
#@Yuri R. Bendaña,Ian Holmes
#t2008
#cBioinformatics
#index767620
#% 
#!
  
#*Precise score for the prediction of peptides cleaved by the proteasome.
#@Ido Ginodi,Tal Vider-Shalit,Lea Tsaban,Yoram Louzoun
#t2008
#cBioinformatics
#index767621
#% 
#!
  
#*PRALINE: a strategy for improved multiple alignment of transmembrane proteins.
#@Walter Pirovano,K. Anton Feenstra,Jaap Heringa
#t2008
#cBioinformatics
#index767622
#% 
#!
  
#*FAST: Fourier transform based algorithms for significance testing of ungapped multiple alignments.
#@Niranjan Nagarajan,Uri Keich
#t2008
#cBioinformatics
#index767623
#% 
#!
  
#*: a fast, automatic and accurate method for detecting and quantifying protein spots in 2-dimensional gel electrophoresis data.
#@Jeffrey S. Morris,Brittan N. Clark,Howard B. Gutstein
#t2008
#cBioinformatics
#index767624
#% 
#!
  
#*TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins.
#@Arlo Z. Randall,Jianlin Cheng,Michael J. Sweredoski,Pierre Baldi
#t2008
#cBioinformatics
#index767625
#% 
#!
  
#*Reconstruction of genetic association networks from microarray data: a partial least squares approach.
#@Vasyl Pihur,Somnath Datta,Susmita Datta
#t2008
#cBioinformatics
#index767626
#% 
#!
  
#*Incorporating sequence information into the scoring function: a hidden Markov model for improved peptide identification.
#@Jainab Khatun,Eric Hamlett,Morgan C. Giddings
#t2008
#cBioinformatics
#index767627
#% 
#!
  
#*Beyond the "best" match: machine learning annotation of protein sequences by integration of different sources of information.
#@Igor V. Tetko,Igor V. Rodchenkov,Mathias C. Walter,Thomas Rattei,Hans-Werner Mewes
#t2008
#cBioinformatics
#index767628
#% 
#!
  
#*Prediction of protein functional residues from sequence by probability density estimation.
#@J. D. Fischer,C. E. Mayer,Johannes Söding
#t2008
#cBioinformatics
#index767629
#% 
#!
  
#*Reconstructing ancestral genome content based on symmetrical best alignments and Dollo parsimony.
#@Onur Sakarya,Kenneth S. Kosik,Todd H. Oakley
#t2008
#cBioinformatics
#index767630
#% 
#!
  
#*Observation of multiple folding pathways of -hairpin trpzip2 from independent continuous folding trajectories.
#@Changjun Chen,Yi Xiao
#t2008
#cBioinformatics
#index767631
#% 
#!
  
#*DiMoVo: a Voronoi tessellation-based method for discriminating crystallographic and biological protein-protein interactions.
#@Julie Bernauer,Ranjit Prasad Bahadur,Francis Rodier,Joël Janin,Anne Poupon
#t2008
#cBioinformatics
#index767632
#% 
#!
  
#*QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations.
#@Jian Yang,Chengcheng Hu,Han Hu,Rongdong Yu,Zhen Xia,Xiuzi Ye,Jun Zhu
#t2008
#cBioinformatics
#index767633
#% 
#!
  
#*GENESIS: genome evolution scenarios.
#@Simon Gog,Martin Bader,Enno Ohlebusch
#t2008
#cBioinformatics
#index767634
#% 
#!
  
#*fdrMotif: identifying -elements by an EM algorithm coupled with false discovery rate control.
#@Leping Li,Robert L. Bass,Yu Liang
#t2008
#cBioinformatics
#index767635
#% 
#!
  
#*Using repeated measurements to validate hierarchical gene clusters.
#@Laurent Bréhélin,Olivier Gascuel,Olivier Martin
#t2008
#cBioinformatics
#index767636
#% 
#!
  
#*Evigan: a hidden variable model for integrating gene evidence for eukaryotic gene prediction.
#@Qian Liu,Aaron J. Mackey,David S. Roos,Fernando C. N. Pereira
#t2008
#cBioinformatics
#index767637
#% 
#!
  
#*A feed-forward loop guarantees robust behavior in carbohydrate uptake.
#@Andreas Kremling,Katja Bettenbrock,Ernst Dieter Gilles
#t2008
#cBioinformatics
#index767638
#% 
#!
  
#*TreeMos: a high-throughput phylogenomic approach to find and visualize phylogenetic mosaicism.
#@J. D. Moore,R. G. Allaby
#t2008
#cBioinformatics
#index767639
#% 
#!
  
#*Using native and syntenically mapped cDNA alignments to improve gene finding.
#@Mario Stanke,Mark Diekhans,Robert Baertsch,David Haussler
#t2008
#cBioinformatics
#index767640
#% 
#!
  
#*Jane: suggesting journals, finding experts.
#@Martijn J. Schuemie,Jan A. Kors
#t2008
#cBioinformatics
#index767641
#% 
#!
  
#*An assessment of the uses of homologous interactions.
#@Ramazan Saeed,Charlotte M. Deane
#t2008
#cBioinformatics
#index767642
#% 
#!
  
#*SOAP: short oligonucleotide alignment program.
#@Ruiqiang Li,Yingrui Li,Karsten Kristiansen,Jun Wang
#t2008
#cBioinformatics
#index767643
#% 
#!
  
#*HCGene: a software tool to support the hierarchical classification of genes.
#@Giorgio Valentini,Nicolò Cesa-Bianchi
#t2008
#cBioinformatics
#index767644
#% 
#!
  
#*Jenti: an efficient tool for mining complex inbred genealogies.
#@Mario Falchi,Christian Fuchsberger
#t2008
#cBioinformatics
#index767645
#% 
#!
  
#*KUTE-BASE: storing, downloading and exporting MIAME-compliant microarray experiments in minutes rather than hours.
#@Sorin Draghici,Adi L. Tarca,Longfei Yu,Stephen Ethier,Roberto Romero
#t2008
#cBioinformatics
#index767646
#% 
#!
  
#*BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks.
#@Andrei Zinovyev,Eric Viara,Laurence Calzone,Emmanuel Barillot
#t2008
#cBioinformatics
#index767647
#% 
#!
  
#*Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R.
#@Peter Langfelder,Bin Zhang,Steve Horvath
#t2008
#cBioinformatics
#index767648
#% 
#!
  
#*Phyutility: a phyloinformatics tool for trees, alignments and molecular data.
#@Stephen A. Smith,Casey W. Dunn
#t2008
#cBioinformatics
#index767649
#% 
#!
  
#*Structural search and retrieval using a tableau representation of protein folding patterns.
#@Arun Siddharth Konagurthu,Peter J. Stuckey,Arthur M. Lesk
#t2008
#cBioinformatics
#index767650
#% 
#!
  
#*Interpool: interpreting smart-pooling results.
#@Nicolas Thierry-Mieg,Gilles Bailly
#t2008
#cBioinformatics
#index767651
#% 
#!
  
#*DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra.
#@Anoop M. Mayampurath,Navdeep Jaitly,Samuel O. Purvine,Matthew E. Monroe,Kenneth J. Auberry,Joshua N. Adkins,Richard D. Smith
#t2008
#cBioinformatics
#index767652
#% 
#!
  
#*A machine-learning approach to combined evidence validation of genome assemblies.
#@Jeong-Hyeon Choi,Sun Kim,Haixu Tang,Justen Andrews,Don G. Gilbert,John Colbourne
#t2008
#cBioinformatics
#index767653
#% 
#!
  
#*TagFinder for the quantitative analysis of gas chromatography - mass spectrometry (GC-MS)-based metabolite profiling experiments.
#@Alexander Lüdemann,Katrin Strassburg,Alexander Erban,Joachim Kopka
#t2008
#cBioinformatics
#index767654
#% 
#!
  
#*GenomeVx: simple web-based creation of editable circular chromosome maps.
#@Gavin C. Conant,Kenneth H. Wolfe
#t2008
#cBioinformatics
#index767655
#% 
#!
  
#*OutlierD: an R package for outlier detection using quantile regression on mass spectrometry data.
#@HyungJun Cho,Yang-jin Kim,Hee Jung Jung,Sang-Won Lee,Jae Won Lee
#t2008
#cBioinformatics
#index767656
#% 
#!
  
#*Compressed indexing and local alignment of DNA.
#@Tak Wah Lam,Wing-Kin Sung,Siu-Lung Tam,Chi-Kwong Wong,Siu-Ming Yiu
#t2008
#cBioinformatics
#index767657
#% 
#!
  
#*ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays.
#@Guillem Rigaill,Philippe Hupé,Anna Almeida,Philippe La Rosa,Jean-Philippe Meyniel,Charles Decraene,Emmanuel Barillot
#t2008
#cBioinformatics
#index767658
#% 
#!
  
#*On distance and similarity in fold space.
#@Manfred J. Sippl
#t2008
#cBioinformatics
#index767659
#% 
#!
  
#*Effect of spatial distribution of T-Cells and HIV load on HIV progression.
#@Frank M. Graziano,Samira Y. Kettoola,Judy M. Munshower,Jack T. Stapleton,George Towfic
#t2008
#cBioinformatics
#index767660
#% 
#!
  
#*From pull-down data to protein interaction networks and complexes with biological relevance.
#@Bing Zhang,Byung-Hoon Park,Tatiana V. Karpinets,Nagiza F. Samatova
#t2008
#cBioinformatics
#index767661
#% 
#!
  
#*Using flowViz to visualize flow cytometry data.
#@Deepayan Sarkar,N. Le Meur,Robert Gentleman
#t2008
#cBioinformatics
#index767662
#% 
#!
  
#*Interactive visualization software for exploring phylogenetic trees and clades.
#@Mark Derthick
#t2008
#cBioinformatics
#index767663
#% 
#!
  
#*Tree-guided Bayesian inference of population structures.
#@Yu Zhang
#t2008
#cBioinformatics
#index767664
#% 
#!
  
#*Disease association tests by inferring ancestral haplotypes using a hidden markov model.
#@Shu-Yi Su,David J. Balding,Lachlan J. M. Coin
#t2008
#cBioinformatics
#index767665
#% 
#!
  
#*Prediction of recursive convex hull class assignments for protein residues.
#@Michael Stout,Jaume Bacardit,Jonathan D. Hirst,Natalio Krasnogor
#t2008
#cBioinformatics
#index767666
#% 
#!
  
#*ONTO-PERL: An API for supporting the development and analysis of bio-ontologies.
#@Erick Antezana,Mikel Egaña,Bernard De Baets,Martin Kuiper,Vladimir Mironov
#t2008
#cBioinformatics
#index767667
#% 
#!
  
#*Bayesian ranking of biochemical system models.
#@Vladislav Vyshemirsky,Mark Girolami
#t2008
#cBioinformatics
#index767668
#% 
#!
  
#*Statistical search on the Semantic Web.
#@Norio Kobayashi,Tetsuro Toyoda
#t2008
#cBioinformatics
#index767669
#% 
#!
  
#*Flexible informatics for linking experimental data to mathematical models via .
#@Julio Saez-Rodriguez,Arthur Goldsipe,Jeremy Muhlich,Leonidas G. Alexopoulos,Bjorn Millard,Douglas A. Lauffenburger,Peter K. Sorger
#t2008
#cBioinformatics
#index767670
#% 
#!
  
#*A discrete view on fold space.
#@Manfred J. Sippl,Stefan J. Suhrer,Markus Gruber,Markus Wiederstein
#t2008
#cBioinformatics
#index767671
#% 
#!
  
#*identification of highly diverged protein repeats by probabilistic consistency.
#@Andreas Biegert,Johannes Söding
#t2008
#cBioinformatics
#index767672
#% 
#!
  
#*Reply to "Comment on causality and pathway search in microarray time series experiment".
#@Nitai D. Mukhopadhyay,Snigdhansu Chatterjee
#t2008
#cBioinformatics
#index767673
#% 
#!
  
#*FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors.
#@Jongsun Park,Jaejin Park,Suwang Jang,Seryun Kim,Sunghyung Kong,Jaeyoung Choi,Kyohun Ahn,Juhyeon Kim,Seungmin Lee,Sunggon Kim,Bongsoo Park,Kyongyong Jung,Soonok Kim,Seogchan Kang,Yong-Hwan Lee
#t2008
#cBioinformatics
#index767674
#% 
#!
  
#*FunSiP: a modular and extensible classifier for the prediction of functional sites in DNA.
#@Michiel Van Bel,Yvan Saeys,Yves Van de Peer
#t2008
#cBioinformatics
#index767675
#% 
#!
  
#*Complexity reduction of biochemical rate expressions.
#@Henning Schmidt,Mads F. Madsen,Sune Danø,Gunnar Cedersund
#t2008
#cBioinformatics
#index767676
#% 
#!
  
#*Identifying trait clusters by linkage profiles: application in genetical genomics.
#@Joshua N. Sampson,Steven G. Self
#t2008
#cBioinformatics
#index767677
#% 
#!
  
#*TaxonGap: a visualization tool for intra- and inter-species variation among individual biomarkers.
#@Bram Slabbinck,Peter Dawyndt,M. Martens,Paul De Vos,Bernard De Baets
#t2008
#cBioinformatics
#index767678
#% 
#!
  
#*PCCA: a program for phylogenetic canonical correlation analysis.
#@Liam J. Revell,Alexis S. Harrison
#t2008
#cBioinformatics
#index767679
#% 
#!
  
#*Prediction of zinc-binding sites in proteins from sequence.
#@Nanjiang Shu,Tuping Zhou,Sven Hovmöller
#t2008
#cBioinformatics
#index767680
#% 
#!
  
#*The effect of sequence quality on sequence alignment.
#@Ketil Malde
#t2008
#cBioinformatics
#index767681
#% 
#!
  
#*Model-based Bayesian clustering (MBBC).
#@Yongsung Joo,James G. Booth,Younghwan Namkoong,George Casella
#t2008
#cBioinformatics
#index767682
#% 
#!
  
#*Comment on causality and pathway search in microarray time series experiment.
#@Radhakrishnan Nagarajan,Meenakshi Upreti
#t2008
#cBioinformatics
#index767683
#% 
#!
  
#*Bayesian models based on test statistics for multiple hypothesis testing problems.
#@Yuan Ji,Yiling Lu,Gordon B. Mills
#t2008
#cBioinformatics
#index767684
#% 
#!
  
#*Inferring horizontal transfers in the presence of rearrangements by the minimum evolution criterion.
#@Hadas Birin,Zohar Gal-Or,Isaac Elias,Tamir Tuller
#t2008
#cBioinformatics
#index767685
#% 
#!
  
#*A segmental maximum a posteriori approach to genome-wide copy number profiling.
#@Robin Andersson,Carl E. G. Bruder,Arkadiusz Piotrowski,Uwe Menzel,Helena Nord,Johanna Sandgren,Torgeir R. Hvidsten,Teresita Diaz de Ståhl,Jan P. Dumanski,Henryk Jan Komorowski
#t2008
#cBioinformatics
#index767686
#% 
#!
  
#*Estimation and assessment of raw copy numbers at the single locus level.
#@Henrik Bengtsson,Rafael A. Irizarry,Benilton Carvalho,Terence P. Speed
#t2008
#cBioinformatics
#index767687
#% 
#!
  
#*Tracing evolutionary pressure.
#@Kai Ye,Gert Vriend,Adriaan P. IJzerman
#t2008
#cBioinformatics
#index767688
#% 
#!
  
#*Biological pathway kinetic rate constants are scale-invariant.
#@Scott Grandison,Richard J. Morris
#t2008
#cBioinformatics
#index767689
#% 
#!
  
#*SVM-HUSTLE - an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.
#@Anuj R. Shah,Christopher S. Oehmen,Bobbie-Jo M. Webb-Robertson
#t2008
#cBioinformatics
#index767690
#% 
#!
  
#*PGMapper: a web-based tool linking phenotype to genes.
#@Qing Xiong,Yuhui Qiu,Weikuan Gu
#t2008
#cBioinformatics
#index767691
#% 
#!
  
#*ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction.
#@Ian M. Overton,Gianandrea Padovani,Mark A. Girolami,Geoffrey J. Barton
#t2008
#cBioinformatics
#index767692
#% 
#!
  
#*GOTreePlus: an interactive gene ontology browser.
#@Bongshin Lee,Kristy Brown,Yetrib Hathout,Jinwook Seo
#t2008
#cBioinformatics
#index767693
#% 
#!
  
#*Prophinder: a computational tool for prophage prediction in prokaryotic genomes.
#@Gipsi Lima-Mendez,Jacques van Helden,Ariane Toussaint,Raphaël Leplae
#t2008
#cBioinformatics
#index767694
#% 
#!
  
#*Detecting hierarchical structure in molecular characteristics of disease using transitive approximations of directed graphs.
#@Juby Jacob,Marcel Jentsch,Dennis Kostka,Stefan Bentink,Rainer Spang
#t2008
#cBioinformatics
#index767695
#% 
#!
  
#*Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models.
#@Osamu Hirose,Ryo Yoshida,Seiya Imoto,Rui Yamaguchi,Tomoyuki Higuchi,Stephen D. Charnock-Jones,Cristin G. Print,Satoru Miyano
#t2008
#cBioinformatics
#index767696
#% 
#!
  
#*Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes.
#@Hyunju Lee,Sek Won Kong,Peter J. Park
#t2008
#cBioinformatics
#index767697
#% 
#!
  
#*ConFunc - functional annotation in the twilight zone.
#@Mark N. Wass,Michael J. E. Sternberg
#t2008
#cBioinformatics
#index767698
#% 
#!
  
#*Rintact: enabling computational analysis of molecular interaction data from the IntAct repository.
#@Tony Chiang,Nianhua Li,Sandra E. Orchard,Samuel Kerrien,Henning Hermjakob,Robert Gentleman,Wolfgang Huber
#t2008
#cBioinformatics
#index767699
#% 
#!
  
#*Predicting proteolytic sites in extracellular proteins: only halfway there.
#@Yossef Kliger,Eyal Gofer,Assaf Wool,Amir Toporik,Avihay Apatoff,Moshe Olshansky
#t2008
#cBioinformatics
#index767700
#% 
#!
  
#*A suite of Perl modules for handling microarray data.
#@James A. Morris,Simon A. Gayther,Ian J. Jacobs,Christopher Jones
#t2008
#cBioinformatics
#index767701
#% 
#!
  
#*: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis.
#@Christian Ritz,Andrej-Nikolai Spiess
#t2008
#cBioinformatics
#index767702
#% 
#!
  
#*e-LiSe - an online tool for finding needles in the "(Medline) haystack".
#@Arek Gladki,Pawel Siedlecki,Szymon Kaczanowski,Piotr Zielenkiewicz
#t2008
#cBioinformatics
#index767703
#% 
#!
  
#*AIMIE: a web-based environment for detection and interpretation of significant sequence motifs in prokaryotic genomes.
#@Jan Mrázek,Shaohua Xie,Xiangxue Guo,Anuj Srivastava
#t2008
#cBioinformatics
#index767704
#% 
#!
  
#*Reference descriptions of cellular electrophysiology models.
#@David P. Nickerson,Alberto Corrias,Martin L. Buist
#t2008
#cBioinformatics
#index767705
#% 
#!
  
#*Consensus generation and variant detection by Celera Assembler.
#@Gennady Denisov,Brian Walenz,Aaron L. Halpern,Jason R. Miller,Nelson Axelrod,Samuel Levy,Granger G. Sutton
#t2008
#cBioinformatics
#index767706
#% 
#!
  
#*The Taverna Interaction Service: enabling manual interaction in workflows.
#@Anders Lanzén,Tom Oinn
#t2008
#cBioinformatics
#index767707
#% 
#!
  
#*Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis.
#@Matthias E. Futschik,Hanspeter Herzel
#t2008
#cBioinformatics
#index767708
#% 
#!
  
#*MMG: a probabilistic tool to identify submodules of metabolic pathways.
#@Guido Sanguinetti,Josselin Noirel,Phillip C. Wright
#t2008
#cBioinformatics
#index767709
#% 
#!
  
#*Fitting a geometric graph to a protein-protein interaction network.
#@Desmond J. Higham,Marija Rasajski,Natasa Przulj
#t2008
#cBioinformatics
#index767710
#% 
#!
  
#*Biochemical Reaction Network Analysis (IBRENA): a package for simulation and analysis of reaction networks.
#@Gang Liu,Sriram Neelamegham
#t2008
#cBioinformatics
#index767711
#% 
#!
  
#*ISD: a software package for Bayesian NMR structure calculation.
#@Wolfgang Rieping,Michael Nilges,Michael Habeck
#t2008
#cBioinformatics
#index767712
#% 
#!
  
#*Inference of biochemical network models in S-system using multiobjective optimization approach.
#@Pang-Kai Liu,Feng-Sheng Wang
#t2008
#cBioinformatics
#index767713
#% 
#!
  
#*PedMine - a simulated annealing algorithm to identify maximally unrelated individuals in population isolates.
#@Julie A. Douglas,Conner I. Sandefur
#t2008
#cBioinformatics
#index767714
#% 
#!
  
#*CompariMotif: quick and easy comparisons of sequence motifs.
#@Richard J. Edwards,Norman E. Davey,Denis C. Shields
#t2008
#cBioinformatics
#index767715
#% 
#!
  
#*MTMDAT: Automated analysis and visualization of mass spectrometry data for tertiary and quaternary structure probing of proteins.
#@Janosch Hennig,Klaus D. M. Hennig,Maria Sunnerhagen
#t2008
#cBioinformatics
#index767716
#% 
#!
  
#*GlycoBase and autoGU: tools for HPLC-based glycan analysis.
#@Matthew P. Campbell,Louise Royle,Catherine M. Radcliffe,Raymond A. Dwek,Pauline M. Rudd
#t2008
#cBioinformatics
#index767717
#% 
#!
  
#*Prediction of the translocon-mediated membrane insertion free energies of protein sequences.
#@Yungki Park,Volkhard Helms
#t2008
#cBioinformatics
#index767718
#% 
#!
  
#*Visualization of unfavorable interactions in protein folds.
#@Christian X. Weichenberger,Piotr Byzia,Manfred J. Sippl
#t2008
#cBioinformatics
#index767719
#% 
#!
  
#*Network-constrained regularization and variable selection for analysis of genomic data.
#@Caiyan Li,Hongzhe Li
#t2008
#cBioinformatics
#index767720
#% 
#!
  
#*Analysis of correlated mutations in HIV-1 protease using spectral clustering.
#@Ying Liu,Eran Eyal,Ivet Bahar
#t2008
#cBioinformatics
#index767721
#% 
#!
  
#*Biological sequence classification utilizing positive and unlabeled data.
#@Yuanyuan Xiao,Mark R. Segal
#t2008
#cBioinformatics
#index767722
#% 
#!
  
#*ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data.
#@Federico Abascal,Pedro Carmona-Saez,José María Carazo,Alberto D. Pascual-Montano
#t2008
#cBioinformatics
#index767723
#% 
#!
  
#*A pattern recognition approach to infer time-lagged genetic interactions.
#@Cheng-Long Chuang,Chih-Hung Jen,Chung-Ming Chen,Grace S. Shieh
#t2008
#cBioinformatics
#index767724
#% 
#!
  
#*Linear time-varying models can reveal non-linear interactions of biomolecular regulatory networks using multiple time-series data.
#@Jongrae Kim,Declan G. Bates,Ian Postlethwaite,Pat Heslop-Harrison,Kwang-Hyun Cho
#t2008
#cBioinformatics
#index767725
#% 
#!
  
#*An analytical pipeline for genomic representations used for cytosine methylation studies.
#@Reid F. Thompson,Mark Reimers,Batbayar Khulan,Mathieu Gissot,Todd A. Richmond,Quan Chen,Xin Zheng,Kami Kim,John M. Greally
#t2008
#cBioinformatics
#index767726
#% 
#!
  
#*Assigning functional linkages to proteins using phylogenetic profiles and continuous phenotypes.
#@Orland R. Gonzalez,Ralf Zimmer
#t2008
#cBioinformatics
#index767727
#% 
#!
  
#*Combining statistical alignment and phylogenetic footprinting to detect regulatory elements.
#@Rahul Satija,Lior Pachter,Jotun Hein
#t2008
#cBioinformatics
#index767728
#% 
#!
  
#*UniProtJAPI: a remote API for accessing UniProt data.
#@Samuel Patient,Daniela Wieser,Michael Kleen,Ernst Kretschmann,Maria Jesus Martin,Rolf Apweiler
#t2008
#cBioinformatics
#index767729
#% 
#!
  
#*Unequal group variances in microarray data analyses.
#@Meaza Demissie,Barbara Mascialino,Stefano Calza,Yudi Pawitan
#t2008
#cBioinformatics
#index767730
#% 
#!
  
#*Merging two gene-expression studies via cross-platform normalization.
#@Andrey A. Shabalin,Håkon Tjelmeland,Cheng Fan,Charles M. Perou,Andrew B. Nobel
#t2008
#cBioinformatics
#index767731
#% 
#!
  
#*A nearest neighbor approach for automated transporter prediction and categorization from protein sequences.
#@Haiquan Li,Xinbin Dai,Xuechun Zhao
#t2008
#cBioinformatics
#index767732
#% 
#!
  
#*An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays.
#@Naoaki Ono,Shingo Suzuki,Chikara Furusawa,Tomoharu Agata,Akiko Kashiwagi,Hiroshi Shimizu,Tetsuya Yomo
#t2008
#cBioinformatics
#index767733
#% 
#!
  
#*A system for generating transcription regulatory networks with combinatorial control of transcription.
#@Sushmita Roy,Margaret Werner-Washburne,Terran Lane
#t2008
#cBioinformatics
#index767734
#% 
#!
  
#*Integrating ARC grid middleware with Taverna workflows.
#@Hajo N. Krabbenhöft,Steffen Möller,Daniel Bayer
#t2008
#cBioinformatics
#index767735
#% 
#!
  
#*Celestial3D: a novel method for 3D visualization of familial data.
#@Angeline M. Loh,Steven Wiltshire,Jon Emery,Kim W. Carter,Lyle J. Palmer
#t2008
#cBioinformatics
#index767736
#% 
#!
  
#*Scaffolding and validation of bacterial genome assemblies using optical restriction maps.
#@Niranjan Nagarajan,Timothy D. Read,Mihai Pop
#t2008
#cBioinformatics
#index767737
#% 
#!
  
#*FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps.
#@Marco Vassura,Luciano Margara,Pietro di Lena,Filippo Medri,Piero Fariselli,Rita Casadio
#t2008
#cBioinformatics
#index767738
#% 
#!
  
#*Optimizing the size of the sequence profiles to increase the accuracy of protein sequence alignments generated by profile-profile algorithms.
#@Aleksandar Poleksic,Mark A. Fienup
#t2008
#cBioinformatics
#index767739
#% 
#!
  
#*3D-Garden: a system for modelling protein-protein complexes based on conformational refinement of ensembles generated with the marching cubes algorithm.
#@Victor I. Lesk,Michael J. E. Sternberg
#t2008
#cBioinformatics
#index767740
#% 
#!
  
#*Domain annotation of trimeric autotransporter adhesins - daTAA.
#@Pawel Szczesny,Andrei N. Lupas
#t2008
#cBioinformatics
#index767741
#% 
#!
  
#*Bayesian inference of the sites of perturbations in metabolic pathways via Markov chain Monte Carlo.
#@Bayu Jayawardhana,Douglas B. Kell,Magnus Rattray
#t2008
#cBioinformatics
#index767742
#% 
#!
  
#*BicOverlapper: A tool for bicluster visualization.
#@Rodrigo Santamaría,Roberto Therón,Luis Quintales
#t2008
#cBioinformatics
#index767743
#% 
#!
  
#*PGMapper: a web-based tool linking phenotype to genes.
#@Qing Xiong,Yuhui Qiu,Weikuan Gu
#t2008
#cBioinformatics
#index767744
#% 
#!
  
#*Probabilistic multi-class multi-kernel learning: on protein fold recognition and remote homology detection.
#@Theodoros Damoulas,Mark A. Girolami
#t2008
#cBioinformatics
#index767745
#% 
#!
  
#*W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data.
#@Xin Chen,Lingqiong Guo,Zhaocheng Fan,Tao Jiang
#t2008
#cBioinformatics
#index767746
#% 
#!
  
#*A note on the false discovery rate and inconsistent comparisons between experiments.
#@Roger Higdon,Gerald van Belle,Eugene Kolker
#t2008
#cBioinformatics
#index767747
#% 
#!
  
#*Peak bagging for peptide mass fingerprinting.
#@Zengyou He,Can Yang,Weichuan Yu
#t2008
#cBioinformatics
#index767748
#% 
#!
  
#*GeneTrack - a genomic data processing and visualization framework.
#@Istvan Albert,Shinichiro Wachi,Cizhong Jiang,B. Franklin Pugh
#t2008
#cBioinformatics
#index767749
#% 
#!
  
#*CellMontage: Similar Expression Profile Search Server.
#@Wataru Fujibuchi,Larisa Kiseleva,Takeaki Taniguchi,Hajime Harada,Paul Horton
#t2008
#cBioinformatics
#index767750
#% 
#!
  
#*PlasmoGF: an integrated system for comparative genomics and phylogenetic analysis of gene families.
#@Xiang Xu,Jinyu Wu,Jian Xiao,Yi Tan,Qiyu Bao,Fangqing Zhao,Xiaokun Li
#t2008
#cBioinformatics
#index767751
#% 
#!
  
#*FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology.
#@Anthony P. Fejes,Gordon Robertson,Mikhail Bilenky,Richard Varhol,Matthew N. Bainbridge,Steven J. M. Jones
#t2008
#cBioinformatics
#index767752
#% 
#!
  
#*siRNA specificity searching incorporating mismatch tolerance data.
#@Alistair M. Chalk,Erik L. L. Sonnhammer
#t2008
#cBioinformatics
#index767753
#% 
#!
  
#*Ensemble non-negative matrix factorization methods for clustering protein-protein interactions.
#@Derek Greene,Gerard Cagney,Nevan J. Krogan,Padraig Cunningham
#t2008
#cBioinformatics
#index767754
#% 
#!
  
#*Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification.
#@Christian Martin,Naryttza N. Diaz,Jörg Ontrup,Tim W. Nattkemper
#t2008
#cBioinformatics
#index767755
#% 
#!
  
#*A Bayesian estimator of protein-protein association probabilities.
#@Jason M. Gilmore,Deanna L. Auberry,Julia L. Sharp,Amanda M. White,Kevin K. Anderson,Don Simone Daly
#t2008
#cBioinformatics
#index767756
#% 
#!
  
#*ASPicDB: A database resource for alternative splicing analysis.
#@Tiziana Castrignanò,M. D'Antonio,Anna Anselmo,Danilo Carrabino,A. D'Onorio De Meo,Anna Maria D'Erchia,Flavio Licciulli,M. Mangiulli,Flavio Mignone,Giulio Pavesi,Ernesto Picardi,A. Riva,Raffaella Rizzi,Paola Bonizzoni,Graziano Pesole
#t2008
#cBioinformatics
#index767757
#% 
#!
  
#*MAMOT: hidden Markov modeling tool.
#@Frédéric Schütz,Mauro Delorenzi
#t2008
#cBioinformatics
#index767758
#% 
#!
  
#*Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers.
#@Claus Lundegaard,Ole Lund,Morten Nielsen
#t2008
#cBioinformatics
#index767759
#% 
#!
  
#*Prediction of disordered regions in proteins based on the meta approach.
#@Takashi Ishida,Kengo Kinoshita
#t2008
#cBioinformatics
#index767760
#% 
#!
  
#*Fast network component analysis (FastNCA) for gene regulatory network reconstruction from microarray data.
#@Chunqi Chang,Zhi Ding,Yeung Sam Hung,Peter Chin Wan Fung
#t2008
#cBioinformatics
#index767761
#% 
#!
  
#*Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-based model of hypersensitivity reactions.
#@Daniele Santoni,Marco Pedicini,Filippo Castiglione
#t2008
#cBioinformatics
#index767762
#% 
#!
  
#*IDMap: facilitating the detection of potential leads with therapeutic targets.
#@Soyang Ha,Young-Ju Seo,Min-Seok Kwon,Byung-Ha Chang,Cheol Kyu Han,Jeong Hyeok Yoon
#t2008
#cBioinformatics
#index767763
#% 
#!
  
#*URL decay in MEDLINE - a 4-year follow-up study.
#@Jonathan D. Wren
#t2008
#cBioinformatics
#index767764
#% 
#!
  
#*: a R package for the multivariate analysis of genetic markers.
#@Thibaut Jombart
#t2008
#cBioinformatics
#index767765
#% 
#!
  
#*Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches.
#@Marianne M. Lee,Michael K. Chan,Ralf Bundschuh
#t2008
#cBioinformatics
#index767766
#% 
#!
  
#*swissPIT: a novel approach for pipelined analysis of mass spectrometry data.
#@Andreas Quandt,Patricia Hernandez,Alexandre Masselot,Céline Hernandez,Sergio Maffioletti,Cesare Pautasso,Ron D. Appel,Frédérique Lisacek
#t2008
#cBioinformatics
#index767767
#% 
#!
  
#*Expected gene-order distances and model selection in bacteria.
#@Daniel Dalevi,Niklas Eriksen
#t2008
#cBioinformatics
#index767768
#% 
#!
  
#*Mireval: a web tool for simple microRNA prediction in genome sequences.
#@William Ritchie,François-Xavier Théodule,Daniel Gautheret
#t2008
#cBioinformatics
#index767769
#% 
#!
  
#*MedEvi: Retrieving textual evidence of relations between biomedical concepts from Medline.
#@Jung-jae Kim,Piotr Pezik,Dietrich Rebholz-Schuhmann
#t2008
#cBioinformatics
#index767770
#% 
#!
  
#*EPO-KB: a knowledge base of biomarker to protein links.
#@Jonathan L. Lustgarten,Chad Kimmel,Henrik Ryberg,William R. Hogan
#t2008
#cBioinformatics
#index767771
#% 
#!
  
#*Divisive Correlation Clustering Algorithm (DCCA) for grouping of genes: detecting varying patterns in expression profiles.
#@Anindya Bhattacharya,Rajat K. De
#t2008
#cBioinformatics
#index767772
#% 
#!
  
#*Annotation-Modules: a tool for finding significant combinations of multisource annotations for gene lists.
#@Michael Hackenberg,Rune Matthiesen
#t2008
#cBioinformatics
#index767773
#% 
#!
  
#*Analysing georeferenced population genetics data with Geneland: a new algorithm to deal with null alleles and a friendly graphical user interface.
#@Gilles Guillot,Filipe Santos,Arnaud Estoup
#t2008
#cBioinformatics
#index767774
#% 
#!
  
#*Forward-time simulations of non-random mating populations using simuPOP.
#@Bo Peng,Christopher I. Amos
#t2008
#cBioinformatics
#index767775
#% 
#!
  
#*Eukaryotic transcription factor binding sites - modeling and integrative search methods.
#@Sridhar Hannenhalli
#t2008
#cBioinformatics
#index767776
#% 
#!
  
#*OnD-CRF: predicting order and disorder in proteins conditional random fields.
#@Lixiao Wang,Uwe H. Sauer
#t2008
#cBioinformatics
#index767777
#% 
#!
  
#*Towards patterns tree of gene coexpression in eukaryotic species.
#@Haiyun Wang,Qi Wang,Xia Li,Bairong Shen,Min Ding,Ziyin Shen
#t2008
#cBioinformatics
#index767778
#% 
#!
  
#*Cytoscape ESP: simple search of complex biological networks.
#@Maital Ashkenazi,Gary D. Bader,Allan Kuchinsky,Menachem Moshelion,David J. States
#t2008
#cBioinformatics
#index767779
#% 
#!
  
#*fdrtool: a versatile R package for estimating local and tail area-based false discovery rates.
#@Korbinian Strimmer
#t2008
#cBioinformatics
#index767780
#% 
#!
  
#*SYCAMORE - a systems biology computational analysis and modeling research environment.
#@Andreas Weidemann,Stefan Richter,Matthias Stein,Sven Sahle,Ralph Gauges,Razif R. Gabdoulline,Irina Surovtsova,Nils Semmelrock,Bruno Besson,Isabel Rojas,Rebecca C. Wade,Ursula Kummer
#t2008
#cBioinformatics
#index767781
#% 
#!
  
#*A global pathway crosstalk network.
#@Yong Li,Pankaj Agarwal,Dilip Rajagopalan
#t2008
#cBioinformatics
#index767782
#% 
#!
  
#*Comparative conservation analysis of the human mitotic phosphoproteome.
#@Rainer Malik,Erich A. Nigg,Roman Körner
#t2008
#cBioinformatics
#index767783
#% 
#!
  
#*jSquid: a Java applet for graphical on-line network exploration.
#@Martin Klammer,Sanjit Roopra,Erik L. L. Sonnhammer
#t2008
#cBioinformatics
#index767784
#% 
#!
  
#*nuScore: a web-interface for nucleosome positioning predictions.
#@Michael Y. Tolstorukov,Vidhu Choudhary,Wilma K. Olson,Victor Zhurkin,Peter J. Park
#t2008
#cBioinformatics
#index767785
#% 
#!
  
#*Identification of OBO nonalignments and its implications for OBO enrichment.
#@Michael Bada,Lawrence Hunter
#t2008
#cBioinformatics
#index767786
#% 
#!
  
#*PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure.
#@Michael J. Sweredoski,Pierre Baldi
#t2008
#cBioinformatics
#index767787
#% 
#!
  
#*TOPDOM: database of domains and motifs with conservative location in transmembrane proteins.
#@Gábor E. Tusnády,Lajos Kalmár,Hédi Hegyi,Peter Tompa,István Simon
#t2008
#cBioinformatics
#index767788
#% 
#!
  
#*Positive selection drives a correlation between non-synonymous/synonymous divergence and functional divergence.
#@Jacob A. Tennessen
#t2008
#cBioinformatics
#index767789
#% 
#!
  
#*Fast grid layout algorithm for biological networks with sweep calculation.
#@Kaname Kojima,Masao Nagasaki,Satoru Miyano
#t2008
#cBioinformatics
#index767790
#% 
#!
  
#*gpDB: a database of GPCRs, G-proteins, effectors and their interactions.
#@Margarita C. Theodoropoulou,Pantelis G. Bagos,Ioannis C. Spyropoulos,Stavros J. Hamodrakas
#t2008
#cBioinformatics
#index767791
#% 
#!
  
#*Predicting protein function from domain content.
#@Kristoffer Forslund,Erik L. L. Sonnhammer
#t2008
#cBioinformatics
#index767792
#% 
#!
  
#*On correcting the overestimation of the permutation-based false discovery rate estimator.
#@Shuo Jiao,Shunpu Zhang
#t2008
#cBioinformatics
#index767793
#% 
#!
  
#*A noise model for mass spectrometry based proteomics.
#@Peicheng Du,Gustavo Stolovitzky,Peter Horvatovich,Rainer Bischoff,Jihyeon Lim,Frank Suits
#t2008
#cBioinformatics
#index767794
#% 
#!
  
#*LOT: a tool for linkage analysis of ordinal traits for pedigree data.
#@Meizhuo Zhang,Rui Feng,Xiang Chen,Buqu Hu,Heping Zhang
#t2008
#cBioinformatics
#index767795
#% 
#!
  
#*Microbial genotype-phenotype mapping by class association rule mining.
#@Makio Tamura,Patrik D'haeseleer
#t2008
#cBioinformatics
#index767796
#% 
#!
  
#*CGHweb: a tool for comparing DNA copy number segmentations from multiple algorithms.
#@Weil R. Lai,Vidhu Choudhary,Peter J. Park
#t2008
#cBioinformatics
#index767797
#% 
#!
  
#*Knowledge-based gene expression classification via matrix factorization.
#@Reinhard Schachtner,Dominik Lutter,P. Knollmüller,Ana Maria Tomé,Fabian J. Theis,Gerd Schmitz,Martin Stetter,Pedro Gómez Vilda,Elmar Wolfgang Lang
#t2008
#cBioinformatics
#index767798
#% 
#!
  
#*PhyloWidget: web-based visualizations for the tree of life.
#@Gregory E. Jordan,William H. Piel
#t2008
#cBioinformatics
#index767799
#% 
#!
  
#*FIRMA: a method for detection of alternative splicing from exon array data.
#@E. Purdom,Ken M. Simpson,Mark D. Robinson,J. G. Conboy,A. V. Lapuk,Terence P. Speed
#t2008
#cBioinformatics
#index767800
#% 
#!
  
#*PatMaN: rapid alignment of short sequences to large databases.
#@Kay Prüfer,Udo Stenzel,Michael Dannemann,Richard E. Green,Michael Lachmann,Janet Kelso
#t2008
#cBioinformatics
#index767801
#% 
#!
  
#*Ontologizer 2.0 - a multifunctional tool for GO term enrichment analysis and data exploration.
#@Sebastian Bauer,Steffen Grossmann,Martin Vingron,Peter N. Robinson
#t2008
#cBioinformatics
#index767802
#% 
#!
  
#*InteroPORC: automated inference of highly conserved protein interaction networks.
#@Magali Michaut,Samuel Kerrien,Luisa Montecchi-Palazzi,Franck Chauvat,Corinne Cassier-Chauvat,Jean-Christophe Aude,Pierre Legrain,Henning Hermjakob
#t2008
#cBioinformatics
#index767803
#% 
#!
  
#*Discerning static and causal interactions in genome-wide reverse engineering problems.
#@Mattia Zampieri,Nicola Soranzo,Claudio Altafini
#t2008
#cBioinformatics
#index767804
#% 
#!
  
#*Modeling promoter grammars with evolving hidden Markov models.
#@Kyoung-Jae Won,Albin Sandelin,Troels Torben Marstrand,Anders Krogh
#t2008
#cBioinformatics
#index767805
#% 
#!
  
#*Aligning LC peaks by converting gradient retention times to retention index of peptides in proteomic experiments.
#@Kosaku Shinoda,Masaru Tomita,Yasushi Ishihama
#t2008
#cBioinformatics
#index767806
#% 
#!
  
#*Estimating dynamic models for gene regulation networks.
#@Jiguo Cao,Hongyu Zhao
#t2008
#cBioinformatics
#index767807
#% 
#!
  
#*OnD-CRF: prediciting order and disorder in proteins conditional random fields.
#@Lixiao Wang,Uwe H. Sauer
#t2008
#cBioinformatics
#index767808
#% 
#!
  
#*Evolutionary design principles of modules that control cellular differentiation: consequences for hysteresis and multistationarity.
#@Junil Kim,Tae-Geon Kim,Sung Hoon Jung,Jeong-Rae Kim,Taesung Park,Pat Heslop-Harrison,Kwang-Hyun Cho
#t2008
#cBioinformatics
#index767809
#% 
#!
  
#*MOCSphaser: a haplotype inference tool from a mixture of copy number variation and single nucleotide polymorphism data.
#@Mamoru Kato,Yusuke Nakamura,Tatsuhiko Tsunoda
#t2008
#cBioinformatics
#index767810
#% 
#!
  
#*Penalized estimation of haplotype frequencies.
#@Kristin L. Ayers,Kenneth Lange
#t2008
#cBioinformatics
#index767811
#% 
#!
  
#*ProBias: a web-server for the identification of user-specified types of compositionally biased segments in protein sequences.
#@Igor B. Kuznetsov
#t2008
#cBioinformatics
#index767812
#% 
#!
  
#*SNP analysis to results (SNPator): a web-based environment oriented to statistical genomics analyses upon SNP data.
#@Carlos Morcillo-Suarez,Josep Alegre,Ricardo Sangros,Elodie Gazave,Rafael de Cid,Roger Milne,Jorge Amigo,Anna Ferrer-Admetlla,Andrés Moreno-Estrada,Michelle Gardner,Ferran Casals,Anna Pérez-Lezaun,David Comas,Elena Bosch,Francesc Calafell,Jaume Bertranpetit,Arcadi Navarro
#t2008
#cBioinformatics
#index767813
#% 
#!
  
#*MPIDB: the microbial protein interaction database.
#@Johannes Goll,Seesandra V. Rajagopala,Shen C. Shiau,Hank Wu,Brian T. Lamb,Peter Uetz
#t2008
#cBioinformatics
#index767814
#% 
#!
  
#*Optimal vaccination schedules using simulated annealing.
#@Marzio Pennisi,Roberto Catanuto,Francesco Pappalardo,Santo Motta
#t2008
#cBioinformatics
#index767815
#% 
#!
  
#*: a pipeline for processing Illumina microarray.
#@Pan Du,Warren A. Kibbe,Simon M. Lin
#t2008
#cBioinformatics
#index767816
#% 
#!
  
#*Malin: maximum likelihood analysis of intron evolution in eukaryotes.
#@Miklós Csürös
#t2008
#cBioinformatics
#index767817
#% 
#!
  
#*In response to "On -value for tandem MS scoring schemes".
#@Jainab Khatun,Morgan C. Giddings
#t2008
#cBioinformatics
#index767818
#% 
#!
  
#*ChemmineR: a compound mining framework for R.
#@Yiqun Cao,Anna Charisi,Li-Chang Cheng,Tao Jiang,Thomas Girke
#t2008
#cBioinformatics
#index767819
#% 
#!
  
#*OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar.
#@Håkan Viklund,Arne Elofsson
#t2008
#cBioinformatics
#index767820
#% 
#!
  
#*A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.
#@Bobbie-Jo M. Webb-Robertson,William R. Cannon,Christopher S. Oehmen,Anuj R. Shah,Vidhya Gurumoorthi,Mary S. Lipton,Katrina M. Waters
#t2008
#cBioinformatics
#index767821
#% 
#!
  
#*An efficient method to identify differentially expressed genes in microarray experiments.
#@Huaizhen Qin,Tao Feng,Scott A. Harding,Chung-Jui Tsai,Shuanglin Zhang
#t2008
#cBioinformatics
#index767822
#% 
#!
  
#*A toolkit for analysing large-scale plant small RNA datasets.
#@Simon Moxon,Frank Schwach,Tamas Dalmay,Daniel MacLean,David J. Studholme,Vincent Moulton
#t2008
#cBioinformatics
#index767823
#% 
#!
  
#*The Sleipnir library for computational functional genomics.
#@Curtis Huttenhower,Mark Schroeder,Maria D. Chikina,Olga G. Troyanskaya
#t2008
#cBioinformatics
#index767824
#% 
#!
  
#*On -values for tandem MS scoring schemes.
#@Mark R. Segal
#t2008
#cBioinformatics
#index767825
#% 
#!
  
#*Swelfe: a detector of internal repeats in sequences and structures.
#@Anne-Laure Abraham,Eduardo P. C. Rocha,Joël Pothier
#t2008
#cBioinformatics
#index767826
#% 
#!
  
#*Characterization and prediction of residues determining protein functional specificity.
#@John A. Capra,Mona Singh
#t2008
#cBioinformatics
#index767827
#% 
#!
  
#*quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation.
#@Samuel Neuenschwander,Frédéric Hospital,Frédéric Guillaume,Jérôme Goudet
#t2008
#cBioinformatics
#index767828
#% 
#!
  
#*An overview of the wcd EST clustering tool.
#@Scott Hazelhurst,Winston Hide,Zsuzsanna Lipták,Ramon Nogueira,Richard Starfield
#t2008
#cBioinformatics
#index767829
#% 
#!
  
#*Modeling immune system control of atherogenesis.
#@Francesco Pappalardo,Salvatore Musumeci,Santo Motta
#t2008
#cBioinformatics
#index767830
#% 
#!
  
#*F-Seq: a feature density estimator for high-throughput sequence tags.
#@Alan P. Boyle,Justin Guinney,Gregory E. Crawford,Terrence S. Furey
#t2008
#cBioinformatics
#index767831
#% 
#!
  
#*Sparse kernel methods for high-dimensional survival data.
#@Ludger Evers,Claudia-Martina Messow
#t2008
#cBioinformatics
#index767832
#% 
#!
  
#*HSEpred: predict half-sphere exposure from protein sequences.
#@Jiangning Song,Hao Tan,Kazuhiro Takemoto,Tatsuya Akutsu
#t2008
#cBioinformatics
#index767833
#% 
#!
  
#*Retroviral promoters in the human genome.
#@Andrew B. Conley,Jittima Piriyapongsa,I. King Jordan
#t2008
#cBioinformatics
#index767834
#% 
#!
  
#*CellTrack: an open-source software for cell tracking and motility analysis.
#@Ahmet Sacan,Hakan Ferhatosmanoglu,Huseyin Coskun
#t2008
#cBioinformatics
#index767835
#% 
#!
  
#*Web-based design and evaluation of T-cell vaccine candidates.
#@James Thurmond,Hyejin Yoon,Carla Kuiken,Karina Yusim,Simon Perkins,James Theiler,Tanmoy Bhattacharya,Bette Korber,Will Fischer
#t2008
#cBioinformatics
#index767836
#% 
#!
  
#*A distance metric for a class of tree-sibling phylogenetic networks.
#@Gabriel Cardona,Mercè Llabrés,Francesc Rosselló,Gabriel Valiente
#t2008
#cBioinformatics
#index767837
#% 
#!
  
#*A correction for estimating error when using the Local Pooled Error Statistical Test.
#@Carl Murie,Robert Nadon
#t2008
#cBioinformatics
#index767838
#% 
#!
  
#*Computing chemical organizations in biological networks.
#@Florian Centler,Christoph Kaleta,Pietro Speroni di Fenizio,Peter Dittrich
#t2008
#cBioinformatics
#index767839
#% 
#!
  
#*Microarray-based classification and clinical predictors: on combined classifiers and additional predictive value.
#@Anne-Laure Boulesteix,Christine Porzelius,Martin Daumer
#t2008
#cBioinformatics
#index767840
#% 
#!
  
#*High-performance hardware implementation of a parallel database search engine for real-time peptide mass fingerprinting.
#@István A. Bogdán,Jenny Rivers,Robert J. Beynon,Daniel Coca
#t2008
#cBioinformatics
#index767841
#% 
#!
  
#*EM-random forest and new measures of variable importance for multi-locus quantitative trait linkage analysis.
#@Sophia S. F. Lee,Lei Sun,Rafal Kustra,Shelley B. Bull
#t2008
#cBioinformatics
#index767842
#% 
#!
  
#*DNAlive: a tool for the physical analysis of DNA at the genomic scale.
#@Josep Ramon Goñi,Carlos Fenollosa,Alberto Pérez,David Torrents,Modesto Orozco
#t2008
#cBioinformatics
#index767843
#% 
#!
  
#*DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony.
#@André Wehe,Mukul S. Bansal,J. Gordon Burleigh,Oliver Eulenstein
#t2008
#cBioinformatics
#index767844
#% 
#!
  
#*Using inferred residue contacts to distinguish between correct and incorrect protein models.
#@Christopher S. Miller,David Eisenberg
#t2008
#cBioinformatics
#index767845
#% 
#!
  
#*High-performance signal peptide prediction based on sequence alignment techniques.
#@Karl Frank,Manfred J. Sippl
#t2008
#cBioinformatics
#index767846
#% 
#!
  
#*Local coherence in genetic interaction patterns reveals prevalent functional versatility.
#@Shuye Pu,Karen Ronen,James Vlasblom,Jack Greenblatt,Shoshana J. Wodak
#t2008
#cBioinformatics
#index767847
#% 
#!
  
#*Sequence-specific reconstruction from fragmentary databases using seed sequences: implementation and validation on SAGE, proteome and generic sequencing data.
#@Tiago José P. Sobreira,Arthur Gruber
#t2008
#cBioinformatics
#index767848
#% 
#!
  
#*Bayesian ranking of biochemical system models.
#@Vladislav Vyshemirsky,Mark A. Girolami
#t2008
#cBioinformatics
#index767849
#% 
#!
  
#*A fast Bayesian change point analysis for the segmentation of microarray data.
#@Chandra Erdman,John W. Emerson
#t2008
#cBioinformatics
#index767850
#% 
#!
  
#*DAnTE: a statistical tool for quantitative analysis of -omics data.
#@Ashoka D. Polpitiya,Wei-Jun Qian,Navdeep Jaitly,Vladislav A. Petyuk,Joshua N. Adkins,David G. Camp II,Gordon A. Anderson,Richard D. Smith
#t2008
#cBioinformatics
#index767851
#% 
#!
  
#*MINS2: Revisiting the molecular code for transmembrane-helix recognition by the Sec61 translocon.
#@Yungki Park,Volkhard Helms
#t2008
#cBioinformatics
#index767852
#% 
#!
  
#*Efficient functional clustering of protein sequences using the Dirichlet process.
#@Duncan P. Brown
#t2008
#cBioinformatics
#index767853
#% 
#!
  
#*Predicting sub-Golgi localization of type II membrane proteins.
#@Aalt D. J. van Dijk,D. Bosch,Cajo J. F. ter Braak,A. R. van der Krol,Roeland C. H. J. van Ham
#t2008
#cBioinformatics
#index767854
#% 
#!
  
#*A probe-density-based analysis method for array CGH data: simulation, normalization and centralization.
#@Hung-I Harry Chen,Fang-Han Hsu,Yuan Jiang,Mong-Hsun Tsai,Pan-Chyr Yang,Paul S. Meltzer,Eric Y. Chuang,Yidong Chen
#t2008
#cBioinformatics
#index767855
#% 
#!
  
#*Biomarker selection and sample prediction for multi-category disease on MALDI-TOF data.
#@Jung Hun Oh,Young Bun Kim,Prem Gurnani,Kevin P. Rosenblatt,Jean X. Gao
#t2008
#cBioinformatics
#index767856
#% 
#!
  
#*Predicting functional regulatory polymorphisms.
#@Ali Torkamani,Nicholas J. Schork
#t2008
#cBioinformatics
#index767857
#% 
#!
  
#*BioMAJ: a flexible framework for databanks synchronization and processing.
#@Olivier Filangi,Yoann Beausse,Anthony Assi,Ludovic Legrand,Jean-Marc Larré,Véronique Martin,Olivier Collin,Christophe Caron,Hugues Leroy,David Allouche
#t2008
#cBioinformatics
#index767858
#% 
#!
  
#*Intrinsic disorder prediction from the analysis of multiple protein fold recognition models.
#@Liam J. McGuffin
#t2008
#cBioinformatics
#index767859
#% 
#!
  
#*Sequence analysis of GerM and SpoVS, uncharacterized bacterial "sporulation" proteins with widespread phylogenetic distribution.
#@Daniel J. Rigden,Michael Y. Galperin
#t2008
#cBioinformatics
#index767860
#% 
#!
  
#*Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells.
#@Meng Li,Hyun-il Henry Paik,Curtis Balch,Yoosung Kim,Lang Li,Tim Hui-Ming Huang,Kenneth P. Nephew,Sun Kim
#t2008
#cBioinformatics
#index767861
#% 
#!
  
#*ForSim: a tool for exploring the genetic architecture of complex traits with controlled truth.
#@Brian W. Lambert,Joseph D. Terwilliger,Kenneth M. Weiss
#t2008
#cBioinformatics
#index767862
#% 
#!
  
#*Database indexing for production MegaBLAST searches.
#@Aleksandr Morgulis,George Coulouris,Yan Raytselis,Thomas L. Madden,Richa Agarwala,Alejandro A. Schäffer
#t2008
#cBioinformatics
#index767863
#% 
#!
  
#*Memory-efficient dynamic programming backtrace and pairwise local sequence alignment.
#@Lee Aaron Newberg
#t2008
#cBioinformatics
#index767864
#% 
#!
  
#*Systematic biological prioritization after a genome-wide association study: an application to nicotine dependence.
#@Scott F. Saccone,Nancy L. Saccone,Gary E. Swan,Pamela A. F. Madden,Alison M. Goate,John P. Rice,Laura J. Bierut
#t2008
#cBioinformatics
#index767865
#% 
#!
  
#*PuReD-MCL: a graph-based PubMed document clustering methodology.
#@Theodosios Theodosiou,Nikos Darzentas,Lefteris Angelis,Christos A. Ouzounis
#t2008
#cBioinformatics
#index767866
#% 
#!
  
#*iFoldRNA: three-dimensional RNA structure prediction and folding.
#@Shantanu Sharma,Feng Ding,Nikolay V. Dokholyan
#t2008
#cBioinformatics
#index767867
#% 
#!
  
#*PoooL: an efficient method for estimating haplotype frequencies from large DNA pools.
#@Han Zhang,Hsin-Chou Yang,Yaning Yang
#t2008
#cBioinformatics
#index767868
#% 
#!
  
#*PathCluster: a framework for gene set-based hierarchical clustering.
#@Tae-Min Kim,Seon-Hee Yim,Yong-Bok Jeong,Yu-Chae Jung,Yeun-Jun Chung
#t2008
#cBioinformatics
#index767869
#% 
#!
  
#*PIGS: automatic prediction of antibody structures.
#@Paolo Marcatili,Alessandra Rosi,Anna Tramontano
#t2008
#cBioinformatics
#index767870
#% 
#!
  
#*Computational design of synthetic gene circuits with composable parts.
#@M. A. Marchisio,Jörg Stelling
#t2008
#cBioinformatics
#index767871
#% 
#!
  
#*Context-dependent DNA recognition code for CH zinc-finger transcription factors.
#@Jiajian Liu,Gary D. Stormo
#t2008
#cBioinformatics
#index767872
#% 
#!
  
#*Automated annotation of gene expression patterns using a controlled vocabulary.
#@Shuiwang Ji,Liang Sun,Rong Jin,Sudhir Kumar,Jieping Ye
#t2008
#cBioinformatics
#index767873
#% 
#!
  
#*TRITON: a graphical tool for ligand-binding protein engineering.
#@Martin Prokop,Jan Adam,Zdenek Kríz,Michaela Wimmerová,Jaroslav Koca
#t2008
#cBioinformatics
#index767874
#% 
#!
  
#*Artificial neural network for prediction of antigenic activity for a major conformational epitope in the hepatitis C virus NS3 protein.
#@James Lara,Robert M. Wohlhueter,Zoya Dimitrova,Yuri Khudyakov
#t2008
#cBioinformatics
#index767875
#% 
#!
  
#*Discovering regulatory motifs in the genome using comparative genomics.
#@Jie Wu,Douglas H. Sieglaff,Joshua Gervin,Xiaohui S. Xie
#t2008
#cBioinformatics
#index767876
#% 
#!
  
#*PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands.
#@Gyan Prakash Srivastava,Juyuan Guo,Huidong Shi,Dong Xu
#t2008
#cBioinformatics
#index767877
#% 
#!
  
#*Comparing simulation results of SBML capable simulators.
#@Frank T. Bergmann,Herbert M. Sauro
#t2008
#cBioinformatics
#index767878
#% 
#!
  
#*Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions.
#@David W. Ritchie,Dima Kozakov,Sandor Vajda
#t2008
#cBioinformatics
#index767879
#% 
#!
  
#*Automated mapping of large-scale chromatin structure in ENCODE.
#@Heng Lian,William A. Thompson,Robert Thurman,John A. Stamatoyannopoulos,William Stafford Noble,Charles E. Lawrence
#t2008
#cBioinformatics
#index767880
#% 
#!
  
#*Semantic reclassification of the UMLS concepts.
#@Jung-Wei Fan,Carol Friedman
#t2008
#cBioinformatics
#index767881
#% 
#!
  
#*Sircah: a tool for the detection and visualization of alternative transcripts.
#@Eoghan D. Harrington,Peer Bork
#t2008
#cBioinformatics
#index767882
#% 
#!
  
#*Classification with reject option in gene expression data.
#@Blaise Hanczar,Edward R. Dougherty
#t2008
#cBioinformatics
#index767883
#% 
#!
  
#*Watermarking sexually reproducing diploid organisms.
#@Dominik Heider,Daniel Kessler,Angelika Barnekow
#t2008
#cBioinformatics
#index767884
#% 
#!
  
#*Bioimage informatics: a new area of engineering biology.
#@Hanchuan Peng
#t2008
#cBioinformatics
#index767885
#% 
#!
  
#*Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models.
#@Art F. Y. Poon,Fraser I. Lewis,Simon D. W. Frost,Sergei L. Kosakovsky Pond
#t2008
#cBioinformatics
#index767886
#% 
#!
  
#*Yale Image Finder (YIF): a new search engine for retrieving biomedical images.
#@Songhua Xu,James P. McCusker,Michael Krauthammer
#t2008
#cBioinformatics
#index767887
#% 
#!
  
#*BioBayes: A software package for Bayesian inference in systems biology.
#@Vladislav Vyshemirsky,Mark Girolami
#t2008
#cBioinformatics
#index767888
#% 
#!
  
#*: statistical analysis for computer models of biological systems using R.
#@Garrett M. Dancik,Karin S. Dorman
#t2008
#cBioinformatics
#index767889
#% 
#!
  
#*Synchronous versus asynchronous modeling of gene regulatory networks.
#@Abhishek Garg,Alessandro Di Cara,Ioannis Xenarios,Luis Mendoza,Giovanni De Micheli
#t2008
#cBioinformatics
#index767890
#% 
#!
  
#*Multimarker analysis and imputation of multiple platform pooling-based genome-wide association studies.
#@Nils Homer,Waibhav Tembe,Szabolcs Szelinger,Margot Redman,Dietrich A. Stephan,John V. Pearson,Stanley F. Nelson,David W. Craig
#t2008
#cBioinformatics
#index767891
#% 
#!
  
#*Coherent coupling of feedback loops: a design principle of cell signaling networks.
#@Yung-Keun Kwon,Kwang-Hyun Cho
#t2008
#cBioinformatics
#index767892
#% 
#!
  
#*An integrated approach for automating validation of extracted ion chromatographic peaks.
#@William D. Nelson,Kert Viele,Bert C. Lynn
#t2008
#cBioinformatics
#index767893
#% 
#!
  
#*Phylocom: software for the analysis of phylogenetic community structure and trait evolution.
#@Campbell O. Webb,David D. Ackerly,Steven W. Kembel
#t2008
#cBioinformatics
#index767894
#% 
#!
  
#*Integrating metabolic, transcriptional regulatory and signal transduction models in .
#@Markus W. Covert,Nan Xiao,Tiffany J. Chen,Jonathan R. Karr
#t2008
#cBioinformatics
#index767895
#% 
#!
  
#*A knowledge-based approach to predict intragenic deletions or duplications.
#@Krishna R. Kalari,Thomas L. Casavant,Todd E. Scheetz
#t2008
#cBioinformatics
#index767896
#% 
#!
  
#*VistaClara: an expression browser plug-in for Cytoscape.
#@Robert Kincaid,Allan Kuchinsky,Michael L. Creech
#t2008
#cBioinformatics
#index767897
#% 
#!
  
#*Bayesian survival analysis in genetic association studies.
#@Ioanna Tachmazidou,Toby Andrew,Claudio J. Verzilli,Michael R. Johnson,Maria De Iorio
#t2008
#cBioinformatics
#index767898
#% 
#!
  
#*MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence.
#@Marco Lippi,Andrea Passerini,Marco Punta,Burkhard Rost,Paolo Frasconi
#t2008
#cBioinformatics
#index767899
#% 
#!
  
#*Optimizing amino acid groupings for GPCR classification.
#@Matthew N. Davies,Andrew Secker,Alex Alves Freitas,Edward Clark,Jonathan Timmis,Darren R. Flower
#t2008
#cBioinformatics
#index767900
#% 
#!
  
#*Robust and efficient identification of biomarkers by classifying features on graphs.
#@TaeHyun Hwang,Hugues Sicotte,Ze Tian,Baolin Wu,Jean-Pierre Kocher,Dennis A. Wigle,Vipin Kumar,Rui Kuang
#t2008
#cBioinformatics
#index767901
#% 
#!
  
#*Powerful fusion: PSI-BLAST and consensus sequences.
#@Dariusz Przybylski,Burkhard Rost
#t2008
#cBioinformatics
#index767902
#% 
#!
  
#*FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
#@Xiang Chen,Simin He,Dongbo Bu,Fa Zhang,Zhiyong Wang,Runsheng Chen,Wen Gao
#t2008
#cBioinformatics
#index767903
#% 
#!
  
#*Metagenomics reveals our incomplete knowledge of global diversity.
#@Miguel Pignatelli,Gabriel Aparício,Ignacio Blanquer,Vicente Hernández,Andrés Moya,Javier Tamames
#t2008
#cBioinformatics
#index767904
#% 
#!
  
#*Message-passing algorithms for the prediction of protein domain interactions from protein-protein interaction data.
#@Mudassar Iqbal,Alex Alves Freitas,Colin G. Johnson,Massimo Vergassola
#t2008
#cBioinformatics
#index767905
#% 
#!
  
#*ProCope - protein complex prediction and evaluation.
#@Jan Krumsiek,Caroline C. Friedel,Ralf Zimmer
#t2008
#cBioinformatics
#index767906
#% 
#!
  
#*MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization.
#@Torsten Blum,Oliver Kohlbacher
#t2008
#cBioinformatics
#index767907
#% 
#!
  
#*Considering dependence among genes and markers for false discovery control in eQTL mapping.
#@Liang Chen,Tiejun Tong,Hongyu Zhao
#t2008
#cBioinformatics
#index767908
#% 
#!
  
#*Apparently low reproducibility of true differential expression discoveries in microarray studies.
#@Min Zhang,Chen Yao,Zheng Guo,Jinfeng Zou,Lin Zhang,Hui Xiao,Dong Wang,Da Yang,Xue Gong,Jing Zhu,Yanhui Li,Xia Li
#t2008
#cBioinformatics
#index767909
#% 
#!
  
#*Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler.
#@Marco Grzegorczyk,Dirk Husmeier,Kieron D. Edwards,Peter Ghazal,Andrew J. Millar
#t2008
#cBioinformatics
#index767910
#% 
#!
  
#*hapConstructor: automatic construction and testing of haplotypes in a Monte Carlo framework.
#@Ryan Abo,Stacey Knight,Jathine Wong,Angela Cox,Nicola J. Camp
#t2008
#cBioinformatics
#index767911
#% 
#!
  
#*Development of a two-dimensional agent-based model for chronic chagasic cardiomyopathy after stem cell transplantation.
#@Viviane Galvão,José Garcia Vivas Miranda,Ricardo Ribeiro-dos-Santos
#t2008
#cBioinformatics
#index767912
#% 
#!
  
#*Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis.
#@Majid Masso,Iosif I. Vaisman
#t2008
#cBioinformatics
#index767913
#% 
#!
  
#*The CellML Model Repository.
#@Catherine M. Lloyd,James R. Lawson,Peter J. Hunter,Poul M. F. Nielsen
#t2008
#cBioinformatics
#index767914
#% 
#!
  
#*Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users.
#@Hagit Shatkay,Fengxia Pan,Andrey Rzhetsky,W. John Wilbur
#t2008
#cBioinformatics
#index767915
#% 
#!
  
#*Enriched random forests.
#@Dhammika Amaratunga,Javier Cabrera,Yung-Seop Lee
#t2008
#cBioinformatics
#index767916
#% 
#!
  
#*Data-driven extraction of relative reasoning rules to limit combinatorial explosion in biodegradation pathway prediction.
#@Kathrin Fenner,Junfeng Gao,Stefan Kramer,Lynda B. M. Ellis,Lawrence P. Wackett
#t2008
#cBioinformatics
#index767917
#% 
#!
  
#*Dasty2, an Ajax protein DAS client.
#@Rafael C. Jimenez,Antony F. Quinn,Alexander García Castro,Alberto Labarga,Kieran O'Neill,Fernando Martinez,Gustavo A. Salazar,Henning Hermjakob
#t2008
#cBioinformatics
#index767918
#% 
#!
  
#*The protein information and property explorer: an easy-to-use, rich-client web application for the management and functional analysis of proteomic data.
#@H. Ramos,P. Shannon,Ruedi Aebersold
#t2008
#cBioinformatics
#index767919
#% 
#!
  
#*Databases, data tombs and dust in the wind.
#@Jonathan D. Wren,Alex Bateman
#t2008
#cBioinformatics
#index767920
#% 
#!
  
#*BioJava: an open-source framework for bioinformatics.
#@Richard C. G. Holland,Thomas A. Down,Matthew R. Pocock,Andreas Prlic,David Huen,Keith James,Sylvain Foisy,Andreas Dräger,Andy Yates,Michael Heuer,Mark J. Schreiber
#t2008
#cBioinformatics
#index767921
#% 
#!
  
#*DrugViz: a Cytoscape plugin for visualizing and analyzing small molecule drugs in biological networks.
#@Bing Xiong,Ke Liu,Jie Wu,David L. Burk,Hualiang Jiang,Jingkang Shen
#t2008
#cBioinformatics
#index767922
#% 
#!
  
#*Dynamical modeling and multi-experiment fitting with PottersWheel.
#@Thomas Maiwald,Jens Timmer
#t2008
#cBioinformatics
#index767923
#% 
#!
  
#*Model-based analysis of interferon-beta induced signaling pathway.
#@Jaroslaw Smieja,Mohammad Jamaluddin,Allan R. Brasier,Marek Kimmel
#t2008
#cBioinformatics
#index767924
#% 
#!
  
#*An unsupervised conditional random fields approach for clustering gene expression time series.
#@Chang-Tsun Li,Yinyin Yuan,Roland Wilson
#t2008
#cBioinformatics
#index767925
#% 
#!
  
#*HELIQUEST: a web server to screen sequences with specific alpha-helical properties.
#@Romain Gautier,Dominique Douguet,Bruno Antonny,Guillaume Drin
#t2008
#cBioinformatics
#index767926
#% 
#!
  
#*: an effective and generally applicable online siRNA design tool.
#@Wuming Gong,Yongliang Ren,Haiyan Zhou,Yejun Wang,Shuli Kang,Tongbin Li
#t2008
#cBioinformatics
#index767927
#% 
#!
  
#*Model-based prediction of sequence alignment quality.
#@Virpi Ahola,Tero Aittokallio,Mauno Vihinen,Esa Uusipaikka
#t2008
#cBioinformatics
#index767928
#% 
#!
  
#*StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees.
#@Ádám Novák,István Miklós,Rune B. Lyngsø,Jotun Hein
#t2008
#cBioinformatics
#index767929
#% 
#!
  
#*Efficient whole-genome association mapping using local phylogenies for unphased genotype data.
#@Zhihong Ding,Thomas Mailund,Yun S. Song
#t2008
#cBioinformatics
#index767930
#% 
#!
  
#*DESHARKY: automatic design of metabolic pathways for optimal cell growth.
#@Guillermo Rodrigo,Javier Carrera,Kristala Jones Prather,Alfonso Jaramillo
#t2008
#cBioinformatics
#index767931
#% 
#!
  
#*Biomolecular pleiomorphism probed by spatial interpolation of coarse models.
#@Mirabela Rusu,Stefan Birmanns,Willy Wriggers
#t2008
#cBioinformatics
#index767932
#% 
#!
  
#*Empirical profile mixture models for phylogenetic reconstruction.
#@Le Si Quang,Olivier Gascuel,Nicolas Lartillot
#t2008
#cBioinformatics
#index767933
#% 
#!
  
#*SynBioSS: the synthetic biology modeling suite.
#@Anthony D. Hill,Jonathan R. Tomshine,Emma M. B. Weeding,Vassilios Sotiropoulos,Yiannis N. Kaznessis
#t2008
#cBioinformatics
#index767934
#% 
#!
  
#*ExactFDR: exact computation of false discovery rate estimate in case-control association studies.
#@Jérôme Wojcik,Karl Forner
#t2008
#cBioinformatics
#index767935
#% 
#!
  
#*cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation.
#@Jason Persampieri,Deborah I. Ritter,Daniel Lees,Jessica Lehoczky,Qiang Li,Su Guo,Jeffrey H. Chuang
#t2008
#cBioinformatics
#index767936
#% 
#!
  
#*GenoSNP: a variational Bayes within-sample SNP genotyping algorithm that does not require a reference population.
#@Eleni Giannoulatou,Christopher Yau,Stefano Colella,Jiannis Ragoussis,Christopher C. Holmes
#t2008
#cBioinformatics
#index767937
#% 
#!
  
#*The Synergizer service for translating gene, protein and other biological identifiers.
#@Gabriel F. Berriz,Frederick P. Roth
#t2008
#cBioinformatics
#index767938
#% 
#!
  
#*INTREPID - INformation-theoretic TREe traversal for Protein functional site IDentification.
#@Sriram Sankararaman,Kimmen Sjölander
#t2008
#cBioinformatics
#index767939
#% 
#!
  
#*SNAP predicts effect of mutations on protein function.
#@Yana Bromberg,Guy Yachdav,Burkhard Rost
#t2008
#cBioinformatics
#index767940
#% 
#!
  
#*System estimation from metabolic time-series data.
#@Gautam Goel,I-Chun Chou,Eberhard O. Voit
#t2008
#cBioinformatics
#index767941
#% 
#!
  
#*Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores.
#@Jasmina Bogojeska,Adrian Alexa,André Altmann,Thomas Lengauer,Jörg Rahnenführer
#t2008
#cBioinformatics
#index767942
#% 
#!
  
#*A comparative study of survival models for breast cancer prognostication based on microarray data: does a single gene beat them all?
#@Benjamin Haibe-Kains,Christine Desmedt,C. Sotiriou,Gianluca Bontempi
#t2008
#cBioinformatics
#index767943
#% 
#!
  
#*Bosque: integrated phylogenetic analysis software.
#@Salvador Ramírez-Flandes,Osvaldo Ulloa
#t2008
#cBioinformatics
#index767944
#% 
#!
  
#*Mixture models for protein structure ensembles.
#@Michael Hirsch,Michael Habeck
#t2008
#cBioinformatics
#index767945
#% 
#!
  
#*Chemical substructures that enrich for biological activity.
#@Justin Klekota,Frederick P. Roth
#t2008
#cBioinformatics
#index767946
#% 
#!
  
#*Genome-scale classification of metabolic reactions and assignment of EC numbers with self-organizing maps.
#@Diogo A. R. S. Latino,Qing-You Zhang,João Aires-de-Sousa
#t2008
#cBioinformatics
#index767947
#% 
#!
  
#*spolTools: online utilities for analyzing spoligotypes of the complex.
#@Chaka Tang,Josephine F. Reyes,Fabio Luciani,Andrew R. Francis,Mark M. Tanaka
#t2008
#cBioinformatics
#index767948
#% 
#!
  
#*A semiparametric test to detect associations between quantitative traits and candidate genes in structured populations.
#@Meijuan Li,Cavan Reilly,Timothy Hanson
#t2008
#cBioinformatics
#index767949
#% 
#!
  
#*MPSQ: a web tool for protein-state searching.
#@SiYuan Zheng,Jia Sheng,Chuan Wang,Xiaojing Wang,Yao Yu,Yun Li,Alex Michie,Jianliang Dai,Yang Zhong,Pei Hao,Lei Liu,Yixue Li
#t2008
#cBioinformatics
#index767950
#% 
#!
  
#*regulatory element analyzer.
#@Ananyo Choudhury,Ansuman Lahiri
#t2008
#cBioinformatics
#index767951
#% 
#!
  
#*STREAM: Static Thermodynamic REgulAtory Model of transcription.
#@Denis C. Bauer,Timothy L. Bailey
#t2008
#cBioinformatics
#index767952
#% 
#!
  
#*Novel pathway compendium analysis elucidates mechanism of pro-angiogenic synthetic small molecule.
#@Kristen A. Wieghaus,Erwin P. Gianchandani,Mikell A. Paige,Milton L. Brown,Edward A. Botchwey,Jason A. Papin
#t2008
#cBioinformatics
#index767953
#% 
#!
  
#*Accurate sequence-based prediction of catalytic residues.
#@Tuo Zhang,Hua Zhang,Ke Chen,Shiyi Shen,Jishou Ruan,Lukasz A. Kurgan
#t2008
#cBioinformatics
#index767954
#% 
#!
  
#*PREDICT-2ND: a tool for generalized protein local structure prediction.
#@Sol Katzman,Christian Barrett,Grant Thiltgen,Rachel Karchin,Kevin Karplus
#t2008
#cBioinformatics
#index767955
#% 
#!
  
#*Predicting protein function from domain content.
#@Kristoffer Forslund,Erik L. L. Sonnhammer
#t2008
#cBioinformatics
#index767956
#% 
#!
  
#*BLogo: a tool for visualization of bias in biological sequences.
#@Wencheng Li,Bo Yang,Shaoguang Liang,Yonghua Wang,Chris Whiteley,Yicheng Cao,Xiaoning Wang
#t2008
#cBioinformatics
#index767957
#% 
#!
  
#*dbNEI2.0: building multilayer network for drug-NEI-disease.
#@Jing Zhang,Tao Ma,Yanda Li,Shao Li
#t2008
#cBioinformatics
#index767958
#% 
#!
  
#*Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks.
#@Antonio Reverter,Eva K. F. Chan
#t2008
#cBioinformatics
#index767959
#% 
#!
  
#*varDB: a pathogen-specific sequence database of protein families involved in antigenic variation.
#@C. Nelson Hayes,Diego Diez,Nicolas Joannin,Wataru Honda,Minoru Kanehisa,Mats Wahlgren,Craig E. Wheelock,Susumu Goto
#t2008
#cBioinformatics
#index767960
#% 
#!
  
#*An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data.
#@Han Xu,Chia-Lin Wei,Feng Lin,Wing-Kin Sung
#t2008
#cBioinformatics
#index767961
#% 
#!
  
#*ProfDistS: (profile-) distance based phylogeny on sequence - structure alignments.
#@Matthias Wolf,Benjamin Ruderisch,Thomas Dandekar,Jörg Schultz,Tobias Müller
#t2008
#cBioinformatics
#index767962
#% 
#!
  
#*Large-scale computation of elementary flux modes with bit pattern trees.
#@Marco Terzer,Jörg Stelling
#t2008
#cBioinformatics
#index767963
#% 
#!
  
#*Supervised principal component analysis for gene set enrichment of microarray data with continuous or survival outcomes.
#@Xi Chen,Lily Wang,Jonathan D. Smith,Bing Zhang
#t2008
#cBioinformatics
#index767964
#% 
#!
  
#*Detection of stoichiometric inconsistencies in biomolecular models.
#@Albert Gevorgyan,Mark G. Poolman,David A. Fell
#t2008
#cBioinformatics
#index767965
#% 
#!
  
#*GOfetcher: a database with complex searching facility for gene ontology.
#@Mehdi Pirooznia,Tanwir Habib,Edward J. Perkins,Youping Deng
#t2008
#cBioinformatics
#index767966
#% 
#!
  
#*Peptide Finder: mapping measured molecular masses to peptides and proteins.
#@Anastasia Alexandridou,George T. Tsangaris,Konstantinos N. Vougas,Konstantina S. Nikita,George M. Spyrou
#t2008
#cBioinformatics
#index767967
#% 
#!
  
#*Computational prediction of human proteins that can be secreted into the bloodstream.
#@Juan Cui,Qi Liu,David Puett,Ying Xu
#t2008
#cBioinformatics
#index767968
#% 
#!
  
#*Integrating expression data with domain interaction networks.
#@Dorothea Emig,Melissa S. Cline,Thomas Lengauer,Mario Albrecht
#t2008
#cBioinformatics
#index767969
#% 
#!
  
#*Improving position-specific predictions of protein functional sites using phylogenetic motifs.
#@K. C. Dukka Bahadur,Dennis R. Livesay
#t2008
#cBioinformatics
#index767970
#% 
#!
  
#*Cytoprophet: a plug-in for protein and domain interaction networks inference.
#@Faruck Morcos,Charles Lamanna,Marcin Sikora,Jesús A. Izaguirre
#t2008
#cBioinformatics
#index767971
#% 
#!
  
#*PathCase: pathways database system.
#@Brendan Elliott,Mustafa Kirac,Ali Cakmak,Gokhan Yavas,Stephen Mayes,En Cheng,Yuan Wang,Chirag Gupta,Gultekin Özsoyoglu,Z. Meral Özsoyoglu
#t2008
#cBioinformatics
#index767972
#% 
#!
  
#*Predicting pathway membership via domain signatures.
#@Holger Fröhlich,Mark Fellmann,Holger Sültmann,Annemarie Poustka,Tim Beißbarth
#t2008
#cBioinformatics
#index767973
#% 
#!
  
#*On the frequency of copy number variants.
#@Iuliana Ionita-Laza,Nan M. Laird,Benjamin A. Raby,Scott T. Weiss,Christoph Lange
#t2008
#cBioinformatics
#index767974
#% 
#!
  
#*Comment on "network-constrained regularization and variable selection for analysis of genomic data".
#@Harald Binder,Martin Schumacher
#t2008
#cBioinformatics
#index767975
#% 
#!
  
#*Fast and accurate search for non-coding RNA pseudoknot structures in genomes.
#@Zhibin Huang,Yong Wu,Joseph Robertson,Liang Feng,Russell L. Malmberg,Liming Cai
#t2008
#cBioinformatics
#index767976
#% 
#!
  
#*Analyzing gene perturbation screens with nested effects models in R and bioconductor.
#@Holger Fröhlich,Tim Beißbarth,Achim Tresch,Dennis Kostka,Juby Jacob,Rainer Spang,Florian Markowetz
#t2008
#cBioinformatics
#index767977
#% 
#!
  
#*Eigen- for dissecting variation in high-dimensional studies.
#@Lin S. Chen,John D. Storey
#t2008
#cBioinformatics
#index767978
#% 
#!
  
#*AMIN domains have a predicted role in localization of diverse periplasmic protein complexes.
#@Robson Francisco de Souza,Vivek Anantharaman,Sandro José de Souza,L. Aravind,Frederico J. Gueiros-Filho
#t2008
#cBioinformatics
#index767979
#% 
#!
  
#*Optimal contact map alignment of protein-protein interfaces.
#@Vinay Pulim,Bonnie Berger,Jadwiga R. Bienkowska
#t2008
#cBioinformatics
#index767980
#% 
#!
  
#*ITFP: an integrated platform of mammalian transcription factors.
#@Guangyong Zheng,Kang Tu,Qing Yang,Yun Xiong,Chaochun Wei,Lu Xie,Yangyong Zhu,Yixue Li
#t2008
#cBioinformatics
#index767981
#% 
#!
  
#*Optimal design of thermally stable proteins.
#@Ryan M. Bannen,Vanitha Suresh,George N. Phillips Jr,Stephen J. Wright,Julie C. Mitchell
#t2008
#cBioinformatics
#index767982
#% 
#!
  
#*A probe-density-based analysis method for array CGH data: simulation, normalization and centralization.
#@Hung-I Harry Chen,Fang-Han Hsu,Yuan Jiang,Mong-Hsun Tsai,Pan-Chyr Yang,Paul S. Meltzer,Eric Y. Chuang,Yidong Chen
#t2008
#cBioinformatics
#index767983
#% 
#!
  
#*SeqMap: mapping massive amount of oligonucleotides to the genome.
#@Hui Jiang,Wing Hung Wong
#t2008
#cBioinformatics
#index767984
#% 
#!
  
#*FACTA: a text search engine for finding associated biomedical concepts.
#@Yoshimasa Tsuruoka,Jun-ichi Tsujii,Sophia Ananiadou
#t2008
#cBioinformatics
#index767985
#% 
#!
  
#*Comparison of algorithms for pre-processing of SELDI-TOF mass spectrometry data.
#@Alejandro Cruz-Marcelo,Rudy Guerra,Marina Vannucci,Yiting Li,Ching C. Lau,Tsz-Kwong Man
#t2008
#cBioinformatics
#index767986
#% 
#!
  
#*OmicsViz: Cytoscape plug-in for visualizing omics data across species.
#@Tian Xia,Julie A. Dickerson
#t2008
#cBioinformatics
#index767987
#% 
#!
  
#*ADZE: a rarefaction approach for counting alleles private to combinations of populations.
#@Zachary A. Szpiech,Mattias Jakobsson,Noah A. Rosenberg
#t2008
#cBioinformatics
#index767988
#% 
#!
  
#*In Response to Comment on "Network-constrained regularization and variable selection for analysis of genomic data".
#@Caiyan Li,Hongzhe Li
#t2008
#cBioinformatics
#index767989
#% 
#!
  
#*PK/DB: database for pharmacokinetic properties and predictive ADME models.
#@Tiago L. Moda,Leonardo G. Torres,Alexandre E. Carrara,Adriano D. Andricopulo
#t2008
#cBioinformatics
#index767990
#% 
#!
  
#*Direct mapping and alignment of protein sequences onto genomic sequence.
#@Osamu Gotoh
#t2008
#cBioinformatics
#index767991
#% 
#!
  
#*Is there an acceleration of the transition rate during the mammalian radiation?
#@M. Peifer,J. E. Karro,H. H. von Grünberg
#t2008
#cBioinformatics
#index767992
#% 
#!
  
#*MotifVoter: a novel ensemble method for fine-grained integration of generic motif finders.
#@Edward Wijaya,Siu-Ming Yiu,Ngo Thanh Son,Kanagasabai Rajaraman,Wing-Kin Sung
#t2008
#cBioinformatics
#index767993
#% 
#!
  
#*Markov model plus -word distributions: a synergy that produces novel statistical measures for sequence comparison.
#@Qi Dai,Yanchun Yang,Tian-Ming Wang
#t2008
#cBioinformatics
#index767994
#% 
#!
  
#*Seeder: discriminative seeding DNA motif discovery.
#@François Fauteux,Mathieu Blanchette,Martina V. Stromvik
#t2008
#cBioinformatics
#index767995
#% 
#!
  
#*Inference of structure in subdivided populations at low levels of genetic differentiation - the correlated allele frequencies model revisited.
#@Gilles Guillot
#t2008
#cBioinformatics
#index767996
#% 
#!
  
#*Predicting gene targets of perturbations via network-based filtering of mRNA expression compendia.
#@Elissa J. Cosgrove,Yingchun Zhou,Timothy S. Gardner,Eric D. Kolaczyk
#t2008
#cBioinformatics
#index767997
#% 
#!
  
#*ProteoWizard: open source software for rapid proteomics tools development.
#@Darren Kessner,Matt Chambers,Robert Burke,David Agus,Parag Mallick
#t2008
#cBioinformatics
#index767998
#% 
#!
  
#*A novel CHHC Zn-finger domain found in spliceosomal proteins and tRNA modifying enzymes.
#@Antonina Andreeva,Henning Tidow
#t2008
#cBioinformatics
#index767999
#% 
#!
  
#*Protein-ligand interaction prediction: an improved chemogenomics approach.
#@Laurent Jacob,Jean-Philippe Vert
#t2008
#cBioinformatics
#index768000
#% 
#!
  
#*EPoS: a modular software framework for phylogenetic analysis.
#@Thasso Griebel,Malte Brinkmeyer,Sebastian Böcker
#t2008
#cBioinformatics
#index768001
#% 
#!
  
#*Identification of the idiosyncratic bacterial protein tyrosine kinase (BY-kinase) family signature.
#@Fanny Jadeau,Emmanuelle Bechet,Alain J. Cozzone,Gilbert Deléage,Christophe Grangeasse,Christophe Combet
#t2008
#cBioinformatics
#index768002
#% 
#!
  
#*Protein function prediction and annotation in an integrated environment powered by web services (AFAWE).
#@Anika Jöcker,Fabian Hoffmann,Andreas Groscurth,Heiko Schoof
#t2008
#cBioinformatics
#index768003
#% 
#!
  
#*ZOOM! Zillions of oligos mapped.
#@Hao Lin,Zefeng Zhang,Michael Q. Zhang,Bin Ma,Ming Li
#t2008
#cBioinformatics
#index768004
#% 
#!
  
#*PRODECOMPv3: decompositions of NMR projections for protein backbone and side-chain assignments and structural studies.
#@Doroteya K. Staykova,Jonas Fredriksson,Martin Billeter
#t2008
#cBioinformatics
#index768005
#% 
#!
  
#*Identifying periodically expressed transcripts in microarray time series data.
#@Sofia Wichert,Konstantinos Fokianos,Korbinian Strimmer
#t2008
#cBioinformatics
#index768006
#% 
#!
  
#*Site-specific evolutionary rates in proteins are better modeled as non-independent and strictly relative.
#@Andrew D. Fernandes,William R. Atchley
#t2008
#cBioinformatics
#index768007
#% 
#!
  
#*tCal: transcriptional probability calculator using thermodynamic model.
#@Xin Zhou,Zhen Su
#t2008
#cBioinformatics
#index768008
#% 
#!
  
#*MPI-LIT: a literature-curated dataset of microbial binary protein--protein interactions.
#@Seesandra V. Rajagopala,Johannes Goll,N. D. Deve Gowda,Kumar C. Sunil,Björn Titz,Arnab Mukherjee,Sharmila S. Mary,Naresh Raviswaran,Chetan S. Poojari,Srinivas Ramachandra,Svetlana Shtivelband,Stephen M. Blazie,Julia Hofmann,Peter Uetz
#t2008
#cBioinformatics
#index768009
#% 
#!
  
#*Physical protein-protein interactions predicted from microarrays.
#@Ta-tsen Soong,Kazimierz O. Wrzeszczynski,Burkhard Rost
#t2008
#cBioinformatics
#index768010
#% 
#!
  
#*MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis.
#@Daehee Hwang,Ning Zhang,Hookeun Lee,Eugene Yi,Hui Zhang,Inyoul Y. Lee,Leroy Hood,Ruedi Aebersold
#t2008
#cBioinformatics
#index768011
#% 
#!
  
#*A toolkit for capturing and sharing FuGE experiments.
#@Khalid Belhajjame,Andrew R. Jones,Norman W. Paton
#t2008
#cBioinformatics
#index768012
#% 
#!
  
#*MonkeySNP: a web portal for non-human primate single nucleotide polymorphisms.
#@Samone Khouangsathiene,Carlo Pearson,Summer Street,Betsy Ferguson,Christopher Dubay
#t2008
#cBioinformatics
#index768013
#% 
#!
  
#*Estimating large-scale signaling networks through nested effect models with intervention effects from microarray data.
#@Holger Fröhlich,Mark Fellmann,Holger Sültmann,Annemarie Poustka,Tim Beißbarth
#t2008
#cBioinformatics
#index768014
#% 
#!
  
#*Functional modules integrating essential cellular functions are predictive of the response of leukaemia cells to DNA damage.
#@Katrin Sameith,Philipp Antczak,Elliot Marston,Nil Turan,Dieter Maier,Tanja Stankovic,Francesco Falciani
#t2008
#cBioinformatics
#index768015
#% 
#!
  
#*GOSLING: a rule-based protein annotator using BLAST and GO.
#@Craig E. Jones,Julian Schwerdt,Tessa Arwen Bretag,Ute Baumann,Alfred L. Brown
#t2008
#cBioinformatics
#index768016
#% 
#!
  
#*Bayesian learning of biological pathways on genomic data assimilation.
#@Ryo Yoshida,Masao Nagasaki,Rui Yamaguchi,Seiya Imoto,Satoru Miyano,Tomoyuki Higuchi
#t2008
#cBioinformatics
#index768017
#% 
#!
  
#*Phylogenetic distances are encoded in networks of interacting pathways.
#@Aurélien Mazurie,Danail Bonchev,Benno Schwikowski,Gregory A. Buck
#t2008
#cBioinformatics
#index768018
#% 
#!
  
#*RNAplex: a fast tool for RNA-RNA interaction search.
#@Hakim Tafer,Ivo L. Hofacker
#t2008
#cBioinformatics
#index768019
#% 
#!
  
#*FunNet: an integrative tool for exploring transcriptional interactions.
#@Edi Prifti,Jean-Daniel Zucker,Karine Clément,Corneliu Henegar
#t2008
#cBioinformatics
#index768020
#% 
#!
  
#*Gene set enrichment analysis using linear models and diagnostics.
#@Assaf P. Oron,Zhen Jiang,Robert Gentleman
#t2008
#cBioinformatics
#index768021
#% 
#!
  
#*TESE: generating specific protein structure test set ensembles.
#@Francesco Sirocco,Silvio C. E. Tosatto
#t2008
#cBioinformatics
#index768022
#% 
#!
  
#*Can sugars be produced from fatty acids? A test case for pathway analysis tools.
#@Luis F. de Figueiredo,Stefan Schuster,Christoph Kaleta,David A. Fell
#t2008
#cBioinformatics
#index768023
#% 
#!
  
#*DOCKGROUND protein-protein docking decoy set.
#@Shiyong Liu,Ying Gao,Ilya A. Vakser
#t2008
#cBioinformatics
#index768024
#% 
#!
  
#*Genome annotation in the presence of insertional RNA editing.
#@Christina Beargie,Tsunglin Liu,Mark Corriveau,Ha Youn Lee,Jonatha Gott,Ralf Bundschuh
#t2008
#cBioinformatics
#index768025
#% 
#!
  
#*Profile Comparer: a program for scoring and aligning profile hidden Markov models.
#@Martin Madera
#t2008
#cBioinformatics
#index768026
#% 
#!
  
#*GenMiner: mining non-redundant association rules from integrated gene expression data and annotations.
#@Ricardo Martínez,Nicolas Pasquier,Claude Pasquier
#t2008
#cBioinformatics
#index768027
#% 
#!
  
#*Improving subcellular localization prediction using text classification and the gene ontology.
#@Alona Fyshe,Yifeng Liu,Duane Szafron,Russell Greiner,Paul Lu
#t2008
#cBioinformatics
#index768028
#% 
#!
  
#*Network-based multiple locus linkage analysis of expression traits.
#@Wei Pan
#t2009
#cBioinformatics
#index1219616
#% 
#!
  
#*Identification of differential gene pathways with principal component analysis.
#@Shuangge Ma,Michael R. Kosorok
#t2009
#cBioinformatics
#index1219617
#% 
#!
  
#*'Double water exclusion': a hypothesis refining the O-ring theory for the hot spots at protein interfaces.
#@Jinyan Li,Qian Liu
#t2009
#cBioinformatics
#index1219618
#% 
#!
  
#*A practical method for exact computation of subtree prune and regraft distance.
#@Yufeng Wu
#t2009
#cBioinformatics
#index1219619
#% 
#!
  
#*CORNA: testing gene lists for regulation by microRNAs.
#@X. Wu,M. Watson
#t2009
#cBioinformatics
#index1219620
#% 
#!
  
#*Combining multiple positive training sets to generate confidence scores for protein-protein interactions.
#@Jingkai Yu,Russell L. Finley Jr.
#t2009
#cBioinformatics
#index1219621
#% 
#!
  
#*Automated diagnosis of LC-MS/MS performance.
#@Hua Xu,Michael A. Freitas
#t2009
#cBioinformatics
#index1219622
#% 
#!
  
#*Human microRNAs co-silence in well-separated groups and have different predicted essentialities.
#@Gábor Boross,Katalin Orosz,Illés J. Farkas
#t2009
#cBioinformatics
#index1219623
#% 
#!
  
#*Constrained mixture estimation for analysis and robust classification of clinical time series.
#@Ivan G. Costa,Alexander Schönhuth,Christoph Hafemeister,Alexander Schliep
#t2009
#cBioinformatics
#index1219624
#% 
#!
  
#*Alignment of the UMLS semantic network with BioTop: methodology and assessment.
#@Stefan Schulz,Elena Beisswanger,László van den Hoek,Olivier Bodenreider,Erik M. van Mulligen
#t2009
#cBioinformatics
#index1219625
#% 
#!
  
#*Prequips - an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data.
#@Nils Gehlenborg,Wei Yan,Inyoul Y. Lee,Hyuntae Yoo,Kay Nieselt,Daehee Hwang,Ruedi Aebersold,Leroy Hood
#t2009
#cBioinformatics
#index1219626
#% 
#!
  
#*AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context.
#@Olivier Martin,Armand Valsesia,Amalio Telenti,Ioannis Xenarios,Brian J. Stevenson
#t2009
#cBioinformatics
#index1219627
#% 
#!
  
#*A multivariate regression approach to association analysis of a quantitative trait network.
#@Seyoung Kim,Kyung-Ah Sohn,Eric P. Xing
#t2009
#cBioinformatics
#index1219628
#% 
#!
  
#*Osiris: an integrated promoter database for .
#@Robert T. Morris,Timothy R. O'Connor,John J. Wyrick
#t2008
#cBioinformatics
#index1219629
#% 
#!
  
#*MSX-3D: a tool to validate 3D protein models using mass spectrometry.
#@Michael Heymann,David Paramelle,Gilles Subra,Eric Forest,Jean Martinez,Christophe Geourjon,Gilbert Deléage
#t2008
#cBioinformatics
#index1219630
#% 
#!
  
#*mspire: mass spectrometry proteomics in Ruby.
#@John T. Prince,Edward M. Marcotte
#t2008
#cBioinformatics
#index1219631
#% 
#!
  
#*REJECTOR: software for population history inference from genetic data via a rejection algorithm.
#@Matthew J. Jobin,Joanna L. Mountain
#t2008
#cBioinformatics
#index1219632
#% 
#!
  
#*WAVECLOCK: wavelet analysis of circadian oscillation.
#@Tom S. Price,Julie E. Baggs,Anne M. Curtis,Garret A. FitzGerald,John B. Hogenesch
#t2008
#cBioinformatics
#index1219633
#% 
#!
  
#*CNVDetector: locating copy number variations using array CGH data.
#@Peng-An Chen,Hsiao-Fei Liu,Kun-Mao Chao
#t2008
#cBioinformatics
#index1219634
#% 
#!
  
#*BASH: a tool for managing BeadArray spatial artefacts.
#@J. M. Cairns,Mark J. Dunning,Matthew E. Ritchie,R. Russell,Andy G. Lynch
#t2008
#cBioinformatics
#index1219635
#% 
#!
  
#*IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions.
#@Anke Busch,Andreas S. Richter,Rolf Backofen
#t2008
#cBioinformatics
#index1219636
#% 
#!
  
#*Identifying differentially expressed subnetworks with MMG.
#@Josselin Noirel,Guido Sanguinetti,Phillip C. Wright
#t2008
#cBioinformatics
#index1219637
#% 
#!
  
#*Identifying molecular markers associated with classification of genotypes by External Logistic Biplots.
#@J. R. Demey,José L. Vicente-Villardón,M. P. Galindo-Villardón,A. Y. Zambrano
#t2008
#cBioinformatics
#index1219638
#% 
#!
  
#*Reconstructing tumor-wise protein expression in tissue microarray studies using a Bayesian cell mixture model.
#@Ronglai Shen,Jeremy M. G. Taylor,Debashis Ghosh
#t2008
#cBioinformatics
#index1219639
#% 
#!
  
#*SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap.
#@Andrew D. Johnson,Robert E. Handsaker,Sara L. Pulit,Marcia M. Nizzari,Christopher J. O'Donnell,Paul I. W. de Bakker
#t2008
#cBioinformatics
#index1219640
#% 
#!
  
#*A flexible forward simulator for populations subject to selection and demography.
#@Ryan D. Hernandez
#t2008
#cBioinformatics
#index1219641
#% 
#!
  
#*Predicting small ligand binding sites in proteins using backbone structure.
#@Andrew J. Bordner
#t2008
#cBioinformatics
#index1219642
#% 
#!
  
#*The Protein Feature Ontology: a tool for the unification of protein feature annotations.
#@Gabrielle A. Reeves,Karen Eilbeck,Michele Magrane,Claire O'Donovan,Luisa Montecchi-Palazzi,Midori A. Harris,Sandra E. Orchard,Rafael C. Jimenez,Andreas Prlic,Tim J. P. Hubbard,Henning Hermjakob,Janet M. Thornton
#t2008
#cBioinformatics
#index1219643
#% 
#!
  
#*Addendum. Cytoprophet: a plug-in for protein and domain interaction networks inference.
#@Faruck Morcos,Charles Lamanna,Marcin Sikora,Jesús A. Izaguirre
#t2008
#cBioinformatics
#index1219644
#% 
#!
  
#*Position-dependent motif characterization using non-negative matrix factorization.
#@Lucie N. Hutchins,Sean M. Murphy,Priyam Singh,Joel H. Graber
#t2008
#cBioinformatics
#index1219645
#% 
#!
  
#*Cross-hybridization modeling on Affymetrix exon arrays.
#@Karen Kapur,Hui Jiang,Yi Xing,Wing Hung Wong
#t2008
#cBioinformatics
#index1219646
#% 
#!
  
#*The Burkholderia Genome Database: facilitating flexible queries and comparative analyses.
#@Geoffrey L. Winsor,Bhavjinder Khaira,Thea Van Rossum,Raymond Lo,Matthew D. Whiteside,Fiona S. L. Brinkman
#t2008
#cBioinformatics
#index1219647
#% 
#!
  
#*GSEA-SNP: applying gene set enrichment analysis to SNP data from genome-wide association studies.
#@Marit Holden,Shiwei Deng,Leszek Wojnowski,Bettina Kulle
#t2008
#cBioinformatics
#index1219648
#% 
#!
  
#*Faster exact Markovian probability functions for motif occurrences: a DFA-only approach.
#@Paolo Ribeca,Emanuele Raineri
#t2008
#cBioinformatics
#index1219649
#% 
#!
  
#*Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications.
#@Brian D. Ondov,Anjana Varadarajan,Karla D. Passalacqua,Nicholas H. Bergman
#t2008
#cBioinformatics
#index1219650
#% 
#!
  
#*CARPET: a web-based package for the analysis of ChIP-chip and expression tiling data.
#@Matteo Cesaroni,Davide Cittaro,Alessandro Brozzi,Pier Giuseppe Pelicci,Lucilla Luzi
#t2008
#cBioinformatics
#index1219651
#% 
#!
  
#*GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus.
#@Yuelin Zhu,Sean Davis,Robert M. Stephens,Paul S. Meltzer,Yidong Chen
#t2008
#cBioinformatics
#index1219652
#% 
#!
  
#*Protease substrate site predictors derived from machine learning on multilevel substrate phage display data.
#@Ching-Tai Chen,Ei-Wen Yang,Hung-Ju Hsu,Yi-Kun Sun,Wen-Lian Hsu,An-Suei Yang
#t2008
#cBioinformatics
#index1219653
#% 
#!
  
#*Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models.
#@Simon Rogers,Mark A. Girolami,Walter Kolch,Katrina M. Waters,Tao Liu,Brian Thrall,H. Steven Wiley
#t2008
#cBioinformatics
#index1219654
#% 
#!
  
#*Searching protein structure databases with DaliLite v.3.
#@L. Holm,S. Kääriäinen,P. Rosenström,A. Schenkel
#t2008
#cBioinformatics
#index1219655
#% 
#!
  
#*Database indexing for production MegaBLAST searches.
#@Aleksandr Morgulis,George Coulouris,Yan Raytselis,Thomas L. Madden,Richa Agarwala,Alejandro A. Schäffer
#t2008
#cBioinformatics
#index1219656
#% 
#!
  
#*FABSIM: a software for generating distributions with various ascertainment biases.
#@Anna Ramírez-Soriano,Francesc Calafell
#t2008
#cBioinformatics
#index1219657
#% 
#!
  
#*A new rule-based algorithm for identifying metabolic markers in prostate cancer using tandem mass spectrometry.
#@Melanie Osl,Stephan Dreiseitl,Bernhard Pfeifer,Klaus Weinberger,Helmut Klocker,Georg Bartsch,Georg Schäfer,Bernhard Tilg,Armin Graber,Christian Baumgartner
#t2008
#cBioinformatics
#index1219658
#% 
#!
  
#*Smarter clustering methods for SNP genotype calling.
#@Yan Lin,George C. Tseng,Soo Yeon Cheong,Lora J. H. Bean,Stephanie L. Sherman,Eleanor Feingold
#t2008
#cBioinformatics
#index1219659
#% 
#!
  
#*A novel method for comparing topological models of protein structures enhanced with ligand information.
#@Mallika Veeramalai,David Gilbert
#t2008
#cBioinformatics
#index1219660
#% 
#!
  
#*Systems-level modeling of cellular glycosylation reaction networks: O-linked glycan formation on natural selectin ligands.
#@Gang Liu,Dhananjay D. Marathe,Khushi L. Matta,Sriram Neelamegham
#t2008
#cBioinformatics
#index1219661
#% 
#!
  
#*PConPy - a Python module for generating 2D protein maps.
#@Hui Kian Ho,Michael J. Kuiper,Kotagiri Ramamohanarao
#t2008
#cBioinformatics
#index1219662
#% 
#!
  
#*: a web application for the automated analysis and mapping of insertional mutagenesis sequence data against Ensembl genomes.
#@Jun Kong,Fei Zhu,Jim Stalker,David J. Adams
#t2008
#cBioinformatics
#index1219663
#% 
#!
  
#*Modularity of cellular networks shows general center-periphery polarization.
#@Alexander E. Vinogradov
#t2008
#cBioinformatics
#index1219664
#% 
#!
  
#*A bioinformatics analysis of the cell line nomenclature.
#@Sirarat Sarntivijai,Alexander S. Ade,Brian D. Athey,David J. States
#t2008
#cBioinformatics
#index1219665
#% 
#!
  
#*Stochastic dynamics of genetic networks: modelling and parameter identification.
#@Eugenio Cinquemani,Andreas Milias-Argeitis,Sean Summers,John Lygeros
#t2008
#cBioinformatics
#index1219666
#% 
#!
  
#*AUGIST: inferring species trees while accommodating gene tree uncertainty.
#@Jeffrey C. Oliver
#t2008
#cBioinformatics
#index1219667
#% 
#!
  
#*Poisson approximation for significance in genome-wide ChIP-chip tiling arrays.
#@Yu Zhang
#t2008
#cBioinformatics
#index1219668
#% 
#!
  
#*QGene 4.0, an extensible Java QTL-analysis platform.
#@Roby Joehanes,James C. Nelson
#t2008
#cBioinformatics
#index1219669
#% 
#!
  
#*Impact of dimeric organization of enzyme on its function: the case of photosynthetic water splitting.
#@Jiri Jablonsky,Petr Susila,Dusan Lazar
#t2008
#cBioinformatics
#index1219670
#% 
#!
  
#*Optimal stepwise experimental design for pairwise functional interaction studies.
#@Fergal P. Casey,Gerard Cagney,Nevan J. Krogan,Denis C. Shields
#t2008
#cBioinformatics
#index1219671
#% 
#!
  
#*MeltDB: a software platform for the analysis and integration of metabolomics experiment data.
#@Heiko Neuweger,Stefan P. Albaum,Michael Dondrup,Marcus Persicke,Tony Watt,Karsten Niehaus,Jens Stoye,Alexander Goesmann
#t2008
#cBioinformatics
#index1219672
#% 
#!
  
#*Specific alignment of structured RNA: stochastic grammars and sequence annealing.
#@Robert K. Bradley,Lior Pachter,Ian Holmes
#t2008
#cBioinformatics
#index1219673
#% 
#!
  
#*POPE - a tool to aid high-throughput phylogenetic analysis.
#@Thorhildur Juliusdottir,Fredrik Pettersson,Richard R. Copley
#t2008
#cBioinformatics
#index1219674
#% 
#!
  
#*Small RNA gene identification and mRNA target predictions in bacteria.
#@Christophe Pichon,Brice Felden
#t2008
#cBioinformatics
#index1219675
#% 
#!
  
#*Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database.
#@Tim J. Carver,Matthew Berriman,Adrian Tivey,Chinmay Patel,Ulrike Böhme,Bart Barrell,Julian Parkhill,Marie-Adèle Rajandream
#t2008
#cBioinformatics
#index1219676
#% 
#!
  
#*Inferring population history with : a user-friendly approach to approximate Bayesian computation.
#@Jean-Marie Cornuet,Filipe Santos,Mark A. Beaumont,Christian P. Robert,Jean-Michel Marin,David J. Balding,Thomas Guillemaud,Arnaud Estoup
#t2008
#cBioinformatics
#index1219677
#% 
#!
  
#*A better block partition and ligation strategy for individual haplotyping.
#@YuZhong Zhao,Yun Xu,ZhiHao Wang,Hong Zhang,Guoliang Chen
#t2008
#cBioinformatics
#index1219678
#% 
#!
  
#*Motif Tool Manager: a web-based framework for motif discovery.
#@Vinhthuy Phan,Nicholas A. Furlotte
#t2008
#cBioinformatics
#index1219679
#% 
#!
  
#*Reconstruction of transcriptional dynamics from gene reporter data using differential equations.
#@Bärbel Finkenstädt,Elizabeth A. Heron,Michal Komorowski,Kieron D. Edwards,Sanyi Tang,Claire V. Harper,Julian R. E. Davis,Michael R. H. White,Andrew J. Millar,David A. Rand
#t2008
#cBioinformatics
#index1219680
#% 
#!
  
#*BioCaster: detecting public health rumors with a Web-based text mining system.
#@Nigel Collier,Son Doan,Ai Kawazoe,Reiko Matsuda Goodwin,Mike Conway,Yoshio Tateno,Quoc-Hung Ngo,Dinh Dien,Asanee Kawtrakul,Koichi Takeuchi,Mika Shigematsu,Kiyosu Taniguchi
#t2008
#cBioinformatics
#index1219681
#% 
#!
  
#*Effective cluster-based seed design for cross-species sequence comparisons.
#@Leming Zhou,Ingrid Mihai,Liliana Florea
#t2008
#cBioinformatics
#index1219682
#% 
#!
  
#*Prediction of kinase-specific phosphorylation sites using conditional random fields.
#@Thanh Hai Dang,Koenraad Van Leemput,Alain Verschoren,Kris Laukens
#t2008
#cBioinformatics
#index1219683
#% 
#!
  
#*Aggressive assembly of pyrosequencing reads with mates.
#@Jason R. Miller,Arthur L. Delcher,Sergey Koren,Eli Venter,Brian Walenz,Anushka Brownley,Justin Johnson,Kelvin Li,Clark M. Mobarry,Granger G. Sutton
#t2008
#cBioinformatics
#index1219684
#% 
#!
  
#*SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology.
#@Håkan Viklund,Andreas Bernsel,Marcin Skwark,Arne Elofsson
#t2008
#cBioinformatics
#index1219685
#% 
#!
  
#*Integrated search and alignment of protein structures.
#@Ahmet Sacan,Ismail Hakki Toroslu,Hakan Ferhatosmanoglu
#t2008
#cBioinformatics
#index1219686
#% 
#!
  
#*IPEP: an tool to examine proteolytic peptides for mass spectrometry.
#@Dihui Lu,Richard Z. Liu,Victoria Izumi,David A. Fenstermacher,Eric B. Haura,John Koomen,Steven Eschrich
#t2008
#cBioinformatics
#index1219687
#% 
#!
  
#*A genetic programming-based approach to the classification of multiclass microarray datasets.
#@Kun-hong Liu,Chun-Gui Xu
#t2009
#cBioinformatics
#index1219688
#% 
#!
  
#*A general computational method for robustness analysis with applications to synthetic gene networks.
#@Aurélien Rizk,Grégory Batt,François Fages,Sylvain Soliman
#t2009
#cBioinformatics
#index1219689
#% 
#!
  
#*CodonExplorer: an online tool for analyzing codon usage and sequence composition, scaling from genes to genomes.
#@Micah Hamady,Stephanie A. Wilson,Jesse Zaneveld,Noboru Sueoka,Rob Knight
#t2009
#cBioinformatics
#index1219690
#% 
#!
  
#*Exploring phenotype-associated modules in an oral cavity tumor using an integrated framework.
#@Zhirong Sun,Jie Luo,Yun Zhou,Junjie Luo,Ke Liu,Wenting Li
#t2009
#cBioinformatics
#index1219691
#% 
#!
  
#*Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays.
#@Chikara Furusawa,Naoaki Ono,Shingo Suzuki,Tomoharu Agata,Hiroshi Shimizu,Tetsuya Yomo
#t2009
#cBioinformatics
#index1219692
#% 
#!
  
#*FDR made easy in differential feature discovery and correlation analyses.
#@Xuefeng Bruce Ling,Harvey Cohen,Joseph Jin,Irwin Lau,James Schilling
#t2009
#cBioinformatics
#index1219693
#% 
#!
  
#*FrameDP: sensitive peptide detection on noisy matured sequences.
#@Jérôme Gouzy,Sébastien Carrère,Thomas Schiex
#t2009
#cBioinformatics
#index1219694
#% 
#!
  
#*Multiperm: shuffling multiple sequence alignments while approximately preserving dinucleotide frequencies.
#@Parvez Anandam,Elfar Torarinsson,Walter L. Ruzzo
#t2009
#cBioinformatics
#index1219695
#% 
#!
  
#*QVALITY: non-parametric estimation of -values and posterior error probabilities.
#@Lukas Käll,John D. Storey,William Stafford Noble
#t2009
#cBioinformatics
#index1219696
#% 
#!
  
#*Optimizing static thermodynamic models of transcriptional regulation.
#@Denis C. Bauer,Timothy L. Bailey
#t2009
#cBioinformatics
#index1219697
#% 
#!
  
#*MiSearch adaptive pubMed search tool.
#@David J. States,Alexander S. Ade,Zachary C. Wright,Aaron V. Bookvich,Brian D. Athey
#t2009
#cBioinformatics
#index1219698
#% 
#!
  
#*Textual data compression in computational biology: a synopsis.
#@Raffaele Giancarlo,Davide Scaturro,Filippo Utro
#t2009
#cBioinformatics
#index1219699
#% 
#!
  
#*ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches.
#@You Jung Kim,Nikhil Teletia,Victor Ruotti,Christopher A. Maher,Arul M. Chinnaiyan,Ron M. Stewart,James A. Thomson,Jignesh M. Patel
#t2009
#cBioinformatics
#index1219700
#% 
#!
  
#*Estimation of errors introduced by confocal imaging into the data on segmentation gene expression in .
#@Ekaterina Myasnikova,Svetlana Surkova,Lena Panok,Maria Samsonova,John Reinitz
#t2009
#cBioinformatics
#index1219701
#% 
#!
  
#*ARCS-Motif: discovering correlated motifs from unaligned biological sequences.
#@Shijie Zhang,Wei Su,Jiong Yang
#t2009
#cBioinformatics
#index1219702
#% 
#!
  
#*Meta-analysis of age-related gene expression profiles identifies common signatures of aging.
#@João Pedro de Magalhães,João Curado,George M. Church
#t2009
#cBioinformatics
#index1219703
#% 
#!
  
#*Assessing phylogenetic motif models for predicting transcription factor binding sites.
#@John Hawkins,Charles E. Grant,William Stafford Noble,Timothy L. Bailey
#t2009
#cBioinformatics
#index1219704
#% 
#!
  
#*DV-Curve: a novel intuitive tool for visualizing and analyzing DNA sequences.
#@Zhu-Jin Zhang
#t2009
#cBioinformatics
#index1219705
#% 
#!
  
#*gcExplorer: interactive exploration of gene clusters.
#@Theresa Scharl,Friedrich Leisch
#t2009
#cBioinformatics
#index1219706
#% 
#!
  
#*The ruggedness of protein-protein energy landscape and the cutoff for 1/ potentials.
#@Anatoly M. Ruvinsky,Ilya A. Vakser
#t2009
#cBioinformatics
#index1219707
#% 
#!
  
#*Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques.
#@Ryan Brenke,Dima Kozakov,Gwo-Yu Chuang,Dmitri Beglov,David Hall,Melissa R. Landon,Carla Mattos,Sandor Vajda
#t2009
#cBioinformatics
#index1219708
#% 
#!
  
#*StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry.
#@Bas van Breukelen,Henk W. P. van den Toorn,Madalina M. Drugan,Albert J. R. Heck
#t2009
#cBioinformatics
#index1219709
#% 
#!
  
#*Parallelized prediction error estimation for evaluation of high-dimensional models.
#@Christine Porzelius,Harald Binder,Martin Schumacher
#t2009
#cBioinformatics
#index1219710
#% 
#!
  
#*Human genomes as email attachments.
#@Scott Christley,Yiming Lu,Chen Li,Xiaohui Xie
#t2009
#cBioinformatics
#index1219711
#% 
#!
  
#*Modeling interactions between adjacent nucleosomes improves genome-wide predictions of nucleosome occupancy.
#@Shai Lubliner,Eran Segal
#t2009
#cBioinformatics
#index1219712
#% 
#!
  
#*SimMLST: simulation of multi-locus sequence typing data under a neutral model.
#@Xavier Didelot,Daniel Lawson,Daniel Falush
#t2009
#cBioinformatics
#index1219713
#% 
#!
  
#*Statistical methods of background correction for Illumina BeadArray data.
#@Yang Xie,Xinlei Wang,Michael Story
#t2009
#cBioinformatics
#index1219714
#% 
#!
  
#*SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses.
#@Michael S. Barker,Katrina M. Dlugosch,A. Chaitanya C. Reddy,Sarah N. Amyotte,Loren H. Rieseberg
#t2009
#cBioinformatics
#index1219715
#% 
#!
  
#*Detecting gene clusters under evolutionary constraint in a large number of genomes.
#@Xu Ling,Xin He,Dong Xin
#t2009
#cBioinformatics
#index1219716
#% 
#!
  
#*Supervised feature selection in mass spectrometry-based proteomic profiling by blockwise boosting.
#@Jan Gertheiss,Gerhard Tutz
#t2009
#cBioinformatics
#index1219717
#% 
#!
  
#*KEA: kinase enrichment analysis.
#@Alexander Lachmann,Avi Ma'ayan
#t2009
#cBioinformatics
#index1219718
#% 
#!
  
#*Impact of allelic dropout on evidential value of forensic DNA profiles using RMNE.
#@Filip Van Nieuwerburgh,E. Goetghebeur,M. Vandewoestyne,Dieter Deforce
#t2009
#cBioinformatics
#index1219719
#% 
#!
  
#*Grouped graphical Granger modeling for gene expression regulatory networks discovery.
#@Aurelie C. Lozano,Naoki Abe,Yan Liu,Saharon Rosset
#t2009
#cBioinformatics
#index1219720
#% 
#!
  
#*Sparse combinatorial inference with an application in cancer biology.
#@Sach Mukherjee,Steven Pelech,Richard M. Neve,Wen-Lin Kuo,Safiyyah Ziyad,Paul T. Spellman,Joe W. Gray,Terence P. Speed
#t2009
#cBioinformatics
#index1219721
#% 
#!
  
#*PanCGH: a genotype-calling algorithm for pangenome CGH data.
#@Jumamurat R. Bayjanov,Michiel Wels,Marjo Starrenburg,Johan E. T. van Hylckama Vlieg,Roland J. Siezen,Douwe Molenaar
#t2009
#cBioinformatics
#index1219722
#% 
#!
  
#*Simulation of crosstalk between small GTPase RhoA and EGFR-ERK signaling pathway via MEKK1.
#@Hu Li,Choong Yong Ung,Xiao Hua Ma,Bao Wen Li,Boon Chuan Low,Zhi Wei Cao,Yu Zong Chen
#t2009
#cBioinformatics
#index1219723
#% 
#!
  
#*MSMAD: a computationally efficient method for the analysis of noisy array CGH data.
#@Eva Budinska,Eva Gelnarova,Michael G. Schimek
#t2009
#cBioinformatics
#index1219724
#% 
#!
  
#*LOCATION: an analysis of the subcellular locations of proteins and comparison with experimentally derived locations.
#@Richard S. P. Horler,Andrew Butcher,Nikitas Papangelopoulos,Peter D. Ashton,Gavin H. Thomas
#t2009
#cBioinformatics
#index1219725
#% 
#!
  
#*ProtVirDB: a database of protozoan virulent proteins.
#@Jayashree Ramana,Dinesh Gupta
#t2009
#cBioinformatics
#index1219726
#% 
#!
  
#*Integrating and annotating the interactome using the MiMI plugin for cytoscape.
#@Jing Gao,Alexander S. Ade,V. Glenn Tarcea,Terry E. Weymouth,Barbara R. Mirel,H. V. Jagadish,David J. States
#t2009
#cBioinformatics
#index1219727
#% 
#!
  
#*GNU MCSim: Bayesian statistical inference for SBML-coded systems biology models.
#@Frédéric Y. Bois
#t2009
#cBioinformatics
#index1219728
#% 
#!
  
#*The SNPMaP package for R: a framework for genome-wide association using DNA pooling on microarrays.
#@Oliver S. P. Davis,Robert Plomin,Leonard C. Schalkwyk
#t2009
#cBioinformatics
#index1219729
#% 
#!
  
#*Power enhancement via multivariate outlier testing with gene expression arrays.
#@Adam L. Asare,Zhong Gao,Vincent J. Carey,Richard Wang,Vicki Seyfert-Margolis
#t2009
#cBioinformatics
#index1219730
#% 
#!
  
#*Properties and identification of human protein drug targets.
#@Tala Bakheet,Andrew J. Doig
#t2009
#cBioinformatics
#index1219731
#% 
#!
  
#*Selection of oligonucleotides for whole-genome microarrays with semi-automatic update.
#@G. Golfier,Sophie Lemoine,A. van Miltenberg,A. Bendjoudi,J. Rossier,Stéphane Le Crom,M.-C. Potier
#t2009
#cBioinformatics
#index1219732
#% 
#!
  
#*Stochastic modelling of genotypic drug-resistance for human immunodeficiency virus towards long-term combination therapy optimization.
#@Mattia C. F. Prosperi,Roberto D'Autilia,Francesca Incardona,Andrea De Luca,Maurizio Zazzi,Giovanni Ulivi
#t2009
#cBioinformatics
#index1219733
#% 
#!
  
#*Biomarker discovery in MALDI-TOF serum protein profiles using discrete wavelet transformation.
#@Theodore Alexandrov,Jens Decker,Bart J. A. Mertens,André M. Deelder,Rob A. E. M. Tollenaar,Peter Maass,Herbert Thiele
#t2009
#cBioinformatics
#index1219734
#% 
#!
  
#*A multivariate test of association.
#@Manuel A. R. Ferreira,Shaun Purcell
#t2009
#cBioinformatics
#index1219735
#% 
#!
  
#*Slider - maximum use of probability information for alignment of short sequence reads and SNP detection.
#@Nawar Malhis,Yaron S. N. Butterfield,Martin Ester,Steven J. M. Jones
#t2009
#cBioinformatics
#index1219736
#% 
#!
  
#*Discovery of phosphorylation motif mixtures in phosphoproteomics data.
#@Anna Ritz,Gregory Shakhnarovich,Arthur R. Salomon,Benjamin J. Raphael
#t2009
#cBioinformatics
#index1219737
#% 
#!
  
#*A local multiple alignment method for detection of non-coding RNA sequences.
#@Yasuo Tabei,Kiyoshi Asai
#t2009
#cBioinformatics
#index1219738
#% 
#!
  
#*Ontology quality assurance through analysis of term transformations.
#@Karin Verspoor,Daniel Dvorkin,K. Bretonnel Cohen,Lawrence Hunter
#t2009
#cBioinformatics
#index1219739
#% 
#!
  
#*Illoura: a software tool for analysis, visualization and semantic querying of cellular and other spatial biological data.
#@Tim McComb,Oliver Cairncross,Andrew B. Noske,David L. A. Wood,Brad J. Marsh,Mark A. Ragan
#t2009
#cBioinformatics
#index1219740
#% 
#!
  
#*DnaSP v5: a software for comprehensive analysis of DNA polymorphism data.
#@P. Librado,J. Rozas
#t2009
#cBioinformatics
#index1219741
#% 
#!
  
#*Determination of sample size in genome-scale RNAi screens.
#@Xiaohua Douglas Zhang,Joseph F. Heyse
#t2009
#cBioinformatics
#index1219742
#% 
#!
  
#*Predicting helix-helix interactions from residue contacts in membrane proteins.
#@Allan Lo,Yi-Yuan Chiu,Einar Andreas Rødland,Ping-Chiang Lyu,Ting-Yi Sung,Wen-Lian Hsu
#t2009
#cBioinformatics
#index1219743
#% 
#!
  
#*DASMI: exchanging, annotating and assessing molecular interaction data.
#@Hagen Blankenburg,Robert D. Finn,Andreas Prlic,Andrew M. Jenkinson,Fidel Ramírez,Dorothea Emig,Sven-Eric Schelhorn,Joachim Büch,Thomas Lengauer,Mario Albrecht
#t2009
#cBioinformatics
#index1219744
#% 
#!
  
#*PLATINUM: a web tool for analysis of hydrophobic/hydrophilic organization of biomolecular complexes.
#@Timothy V. Pyrkov,Anton O. Chugunov,Nikolay A. Krylov,Dmitry E. Nolde,Roman G. Efremov
#t2009
#cBioinformatics
#index1219745
#% 
#!
  
#*A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays.
#@Zia Khan,Joshua S. Bloom,Leonid Kruglyak,Mona Singh
#t2009
#cBioinformatics
#index1219746
#% 
#!
  
#*Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.
#@Nurcan Tuncbag,Attila Gürsoy,Ozlem Keskin
#t2009
#cBioinformatics
#index1219747
#% 
#!
  
#*High-performance gene name normalization with GENO.
#@Joachim Wermter,Katrin Tomanek,Udo Hahn
#t2009
#cBioinformatics
#index1219748
#% 
#!
  
#*Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network.
#@Zheng Guo,Yongjin Li,Xue Gong,Chen Yao,Wencai Ma,Dong Wang,Yanhui Li,Jing Zhu,Min Zhang,Da Yang,Jing Wang
#t2009
#cBioinformatics
#index1219749
#% 
#!
  
#*Glycan family analysis for deducing -glycan topology from single MS.
#@David Goldberg,Marshall W. Bern,Simon J. North,Stuart M. Haslam,Anne Dell
#t2009
#cBioinformatics
#index1219750
#% 
#!
  
#*Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment.
#@Benedict Paten,Javier Herrero,Kathryn Beal,Ewan Birney
#t2009
#cBioinformatics
#index1219751
#% 
#!
  
#*PROMOT: modular modeling for systems biology.
#@Sebastian Mirschel,Katrin Steinmetz,Michael Rempel,Martin Ginkel,Ernst Dieter Gilles
#t2009
#cBioinformatics
#index1219752
#% 
#!
  
#*Proteome coverage prediction with infinite Markov models.
#@Manfred Claassen,Ruedi Aebersold,Joachim M. Buhmann
#t2009
#cBioinformatics
#index1219753
#% 
#!
  
#*: enhanced suffix array construction tool.
#@Robert Homann,David Fleer,Robert Giegerich,Marc Rehmsmeier
#t2009
#cBioinformatics
#index1219754
#% 
#!
  
#*BioCichlid: central dogma-based 3D visualization system of time-course microarray data on a hierarchical biological network.
#@Ryosuke R. Ishiwata,Masaki S. Morioka,Soichi Ogishima,Hiroshi Tanaka
#t2009
#cBioinformatics
#index1219755
#% 
#!
  
#*Gaussian process regression bootstrapping: exploring the effects of uncertainty in time course data.
#@Paul D. W. Kirk,Michael P. H. Stumpf
#t2009
#cBioinformatics
#index1219756
#% 
#!
  
#*dCAS: a desktop application for cDNA sequence annotation.
#@Yongjian Guo,Jose M. C. Ribeiro,Jennifer M. Anderson,Stephan Bour
#t2009
#cBioinformatics
#index1219757
#% 
#!
  
#*Evaluating contributions of natural language parsers to protein-protein interaction extraction.
#@Yusuke Miyao,Kenji Sagae,Rune Sætre,Takuya Matsuzaki,Jun-ichi Tsujii
#t2009
#cBioinformatics
#index1219758
#% 
#!
  
#*OnTheFly: a tool for automated document-based text annotation, data linking and network generation.
#@Georgios A. Pavlopoulos,Evangelos Pafilis,M. Kuhn,Sean D. Hooper,Reinhard Schneider
#t2009
#cBioinformatics
#index1219759
#% 
#!
  
#*Radié: visualizing taxon properties and parsimonious mappings using a radial phylogenetic tree.
#@Jacqueline L. Whalley,Stephen Brooks,Robert G. Beiko
#t2009
#cBioinformatics
#index1219760
#% 
#!
  
#*SNPnexus: a web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms.
#@Claude Chelala,Arshad Khan,Nicholas R. Lemoine
#t2009
#cBioinformatics
#index1219761
#% 
#!
  
#*PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots.
#@Yanga Byun,Kyungsook Han
#t2009
#cBioinformatics
#index1219762
#% 
#!
  
#*SECISaln, a web-based tool for the creation of structure-based alignments of eukaryotic SECIS elements.
#@Charles E. Chapple,Roderic Guigó,Alain Krol
#t2009
#cBioinformatics
#index1219763
#% 
#!
  
#*Comment on 'A congruence index for testing topological similarity between trees'.
#@Anne Kupczok,Arndt von Haeseler
#t2009
#cBioinformatics
#index1219764
#% 
#!
  
#*Align human interactome with phenome to identify causative genes and networks underlying disease families.
#@Xuebing Wu,Qifang Liu,Rui Jiang
#t2009
#cBioinformatics
#index1219765
#% 
#!
  
#*ISMB 2008 conference report.
#@Clare Sansom
#t2009
#cBioinformatics
#index1219766
#% 
#!
  
#*IsoRankN: spectral methods for global alignment of multiple protein networks.
#@Chung-Shou Liao,Kanghao Lu,Michael Baym,Rohit Singh,Bonnie Berger
#t2009
#cBioinformatics
#index1219767
#% 
#!
  
#*Boosting for high-dimensional time-to-event data with competing risks.
#@Harald Binder,Arthur Allignol,Martin Schumacher,Jan Beyersmann
#t2009
#cBioinformatics
#index1219768
#% 
#!
  
#*Identification of ribosomal RNA genes in metagenomic fragments.
#@Ying Huang,Paul Gilna,Weizhong Li
#t2009
#cBioinformatics
#index1219769
#% 
#!
  
#*STEM: species tree estimation using maximum likelihood for gene trees under coalescence.
#@Laura Salter Kubatko,Bryan C. Carstens,L. Lacey Knowles
#t2009
#cBioinformatics
#index1219770
#% 
#!
  
#*Probabilistic assignment of formulas to mass peaks in metabolomics experiments.
#@Simon Rogers,Richard A. Scheltema,Mark A. Girolami,Rainer Breitling
#t2009
#cBioinformatics
#index1219771
#% 
#!
  
#*Affinity Density: a novel genomic approach to the identification of transcription factor regulatory targets.
#@Dennis J. Hazelett,Daniel L. Lakeland,Joseph B. Weiss
#t2009
#cBioinformatics
#index1219772
#% 
#!
  
#*Genetic algorithms for simultaneous variable and sample selection in metabonomics.
#@Rachel Cavill,Hector C. Keun,Elaine Holmes,John C. Lindon,Jeremy K. Nicholson,Timothy M. D. Ebbels
#t2009
#cBioinformatics
#index1219773
#% 
#!
  
#*MeSH Up: effective MeSH text classification for improved document retrieval.
#@Dolf Trieschnigg,Piotr Pezik,Vivian Lee,Franciska de Jong,Wessel Kraaij,Dietrich Rebholz-Schuhmann
#t2009
#cBioinformatics
#index1219774
#% 
#!
  
#*Cloud computing.
#@Alex Bateman,Matt Wood
#t2009
#cBioinformatics
#index1219775
#% 
#!
  
#*A neural network model for constructing endophenotypes of common complex diseases: an application to male young-onset hypertension microarray data.
#@Ke-Shiuan Lynn,Li-Lan Li,Yen-Ju Lin,Chiuen-Huei Wang,Shu-Hui Sheng,Ju-Hwa Lin,Wayne Liao,Wen-Lian Hsu,Wen-Harn Pan
#t2009
#cBioinformatics
#index1219776
#% 
#!
  
#*iMembrane: homology-based membrane-insertion of proteins.
#@Sebastian Kelm,Jiye Shi,Charlotte M. Deane
#t2009
#cBioinformatics
#index1219777
#% 
#!
  
#*GWAS GUI: graphical browser for the results of whole-genome association studies with high-dimensional phenotypes.
#@Wei Chen,Liming Liang,Gonçalo R. Abecasis
#t2009
#cBioinformatics
#index1219778
#% 
#!
  
#*Model-based clustering of array CGH data.
#@Sohrab P. Shah,K-John Cheung Jr.,Nathalie A. Johnson,Guillaume Alain,Randy D. Gascoyne,Douglas E. Horsman,Raymond T. Ng,Kevin P. Murphy
#t2009
#cBioinformatics
#index1219779
#% 
#!
  
#*Many-core algorithms for statistical phylogenetics.
#@Marc A. Suchard,Andrew Rambaut
#t2009
#cBioinformatics
#index1219780
#% 
#!
  
#*Benchmarking regulatory network reconstruction with GRENDEL.
#@Brian C. Haynes,Michael R. Brent
#t2009
#cBioinformatics
#index1219781
#% 
#!
  
#*Predicting functionality of protein-DNA interactions by integrating diverse evidence.
#@Duygu Ucar,Andreas Beyer,Srinivasan Parthasarathy,Christopher T. Workman
#t2009
#cBioinformatics
#index1219782
#% 
#!
  
#*Bag of Peaks: interpretation of NMR spectrometry.
#@Gavin Brelstaff,Manuele Bicego,Nicola Culeddu,Matilde Chessa
#t2009
#cBioinformatics
#index1219783
#% 
#!
  
#*Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information.
#@Cristina Marino Buslje,Javier Santos,Jose M. Delfino,Morten Nielsen
#t2009
#cBioinformatics
#index1219784
#% 
#!
  
#*Profiling model T-cell metagenomes with short reads.
#@René L. Warren,Brad H. Nelson,Robert A. Holt
#t2009
#cBioinformatics
#index1219785
#% 
#!
  
#*Viruses selectively mutate their CD8+ T-cell epitopes - a large-scale immunomic analysis.
#@Tal Vider-Shalit,Ronit Sarid,Kobi Maman,Lea Tsaban,Ran Levi,Yoram Louzoun
#t2009
#cBioinformatics
#index1219786
#% 
#!
  
#*Prediction of sub-cavity binding preferences using an adaptive physicochemical structure representation.
#@Izhar Wallach,Ryan H. Lilien
#t2009
#cBioinformatics
#index1219787
#% 
#!
  
#*DTA: dihedral transition analysis for characterization of the effects of large main-chain dihedral changes in proteins.
#@Wataru Nishima,Guoying Qi,Steven Hayward,Akio Kitao
#t2009
#cBioinformatics
#index1219788
#% 
#!
  
#*BISEN: Biochemical Simulation Environment.
#@J. Vanlier,F. Wu,Feng Qi,K. C. Vinnakota,Yu Han,Ranjan K. Dash,F. Yang,Daniel A. Beard
#t2009
#cBioinformatics
#index1219789
#% 
#!
  
#*DIYA: a bacterial annotation pipeline for any genomics lab.
#@Andrew C. Stewart,Brian Osborne,Timothy D. Read
#t2009
#cBioinformatics
#index1219790
#% 
#!
  
#*: a genome annotation drawing library.
#@Sascha Steinbiss,Gordon Gremme,Christin Schärfer,Malte Mader,Stefan Kurtz
#t2009
#cBioinformatics
#index1219791
#% 
#!
  
#*Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution.
#@Björn Nilsson,Mikael Johansson,Fátima Al-Shahrour,Anne E. Carpenter,Benjamin L. Ebert
#t2009
#cBioinformatics
#index1219792
#% 
#!
  
#*LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data.
#@Maureen A. Sartor,George D. Leikauf,Mario Medvedovic
#t2009
#cBioinformatics
#index1219793
#% 
#!
  
#*Genotype-phenotype associations: substitution models to detect evolutionary associations between phenotypic variables and genotypic evolutionary rate.
#@Timothy D. O'Connor,Nicholas I. Mundy
#t2009
#cBioinformatics
#index1219794
#% 
#!
  
#*Predicting DNA recognition by CysHis zinc finger proteins.
#@Anton V. Persikov,Robert Osada,Mona Singh
#t2009
#cBioinformatics
#index1219795
#% 
#!
  
#*Testing significance relative to a fold-change threshold is a TREAT.
#@Davis J. McCarthy,Gordon K. Smyth
#t2009
#cBioinformatics
#index1219796
#% 
#!
  
#*A partition function algorithm for interacting nucleic acid strands.
#@Hamidreza Chitsaz,Raheleh Salari,Süleyman Cenk Sahinalp,Rolf Backofen
#t2009
#cBioinformatics
#index1219797
#% 
#!
  
#*Inference of locus-specific ancestry in closely related populations.
#@Bogdan Pasaniuc,Sriram Sankararaman,Gad Kimmel,Eran Halperin
#t2009
#cBioinformatics
#index1219798
#% 
#!
  
#*NOE-Use of NOE networks for NMR resonance assignment of proteins with known 3D structure.
#@Dirk Stratmann,Carine van Heijenoort,Eric Guittet
#t2009
#cBioinformatics
#index1219799
#% 
#!
  
#*Visualization of genomic data with the Hilbert curve.
#@Simon Anders
#t2009
#cBioinformatics
#index1219800
#% 
#!
  
#*The package for finding top scoring pair classifiers in .
#@Jeffrey T. Leek
#t2009
#cBioinformatics
#index1219801
#% 
#!
  
#*Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules.
#@Jia Meng,Shou-Jiang Gao,Yufei Huang
#t2009
#cBioinformatics
#index1219802
#% 
#!
  
#*Genetic network inference as a series of discrimination tasks.
#@Shuhei Kimura,Satoshi Nakayama,Mariko Hatakeyama
#t2009
#cBioinformatics
#index1219803
#% 
#!
  
#*Cross species analysis of microarray expression data.
#@Yong Lu,Peter Huggins,Ziv Bar-Joseph
#t2009
#cBioinformatics
#index1219804
#% 
#!
  
#*Ratio adjustment and calibration scheme for gene-wise normalization to enhance microarray inter-study prediction.
#@Chunrong Cheng,Kui Shen,Chi Song,Jianhua Luo,George C. Tseng
#t2009
#cBioinformatics
#index1219805
#% 
#!
  
#*LOCP - locating pilus operons in Gram-positive bacteria.
#@Ilya Plyusnin,Liisa Holm,Matti Kankainen
#t2009
#cBioinformatics
#index1219806
#% 
#!
  
#*Reduced amino acid alphabets exhibit an improved sensitivity and selectivity in fold assignment.
#@Eric L. Peterson,Jané Kondev,Julie A. Theriot,Rob Phillips
#t2009
#cBioinformatics
#index1219807
#% 
#!
  
#*Infernal 1.0: inference of RNA alignments.
#@Eric P. Nawrocki,Diana L. Kolbe,Sean R. Eddy
#t2009
#cBioinformatics
#index1219808
#% 
#!
  
#*Approximate Bayesian feature selection on a large meta-dataset offers novel insights on factors that effect siRNA potency.
#@Jochen W. Klingelhoefer,Loukas Moutsianas,Christopher C. Holmes
#t2009
#cBioinformatics
#index1219809
#% 
#!
  
#*Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements.
#@Leila Taher,Ivan Ovcharenko
#t2009
#cBioinformatics
#index1219810
#% 
#!
  
#*Global alignment of protein-protein interaction networks by graph matching methods.
#@Mikhail Zaslavskiy,Francis R. Bach,Jean-Philippe Vert
#t2009
#cBioinformatics
#index1219811
#% 
#!
  
#*Gene network reconstruction from transcriptional dynamics under kinetic model uncertainty: a case for the second derivative.
#@David R. Bickel,Zahra Montazeri,Pei-Chun Hsieh,Mary Beatty,Shai J. Lawit,Nicholas J. Bate
#t2009
#cBioinformatics
#index1219812
#% 
#!
  
#*Matrix correlations for high-dimensional data: the modified RV-coefficient.
#@Age K. Smilde,Henk A. L. Kiers,S. Bijlsma,C. M. Rubingh,M. J. van Erk
#t2009
#cBioinformatics
#index1219813
#% 
#!
  
#*BNFinder: exact and efficient method for learning Bayesian networks.
#@Bartek Wilczynski,Norbert Dojer
#t2009
#cBioinformatics
#index1219814
#% 
#!
  
#*DSSTox chemical-index files for exposure-related experiments in ArrayExpress and Gene Expression Omnibus: enabling toxico-chemogenomics data linkages.
#@ClarLynda R. Williams-DeVane,Maritja A. Wolf,Ann M. Richard
#t2009
#cBioinformatics
#index1219815
#% 
#!
  
#*Genetic association analysis with FAMHAP: a major program update.
#@Christine Herold,Tim Becker
#t2009
#cBioinformatics
#index1219816
#% 
#!
  
#*Erratum: sample size determination for the false discovery rate.
#@Stan Pounds,Cheng Cheng
#t2009
#cBioinformatics
#index1219817
#% 
#!
  
#*PASTAA: identifying transcription factors associated with sets of co-regulated genes.
#@Helge G. Roider,Thomas Manke,Sean O'Keeffe,Martin Vingron,Stefan A. Haas
#t2009
#cBioinformatics
#index1219818
#% 
#!
  
#*Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors.
#@Alex Bateman,Robert D. Finn,Peter J. Sims,Therese Wiedmer,Andreas Biegert,Johannes Söding
#t2009
#cBioinformatics
#index1219819
#% 
#!
  
#*are better than one: an ensemble-based motif finder and its application to regulatory element prediction.
#@Chen Yanover,Mona Singh,Elena Zaslavsky
#t2009
#cBioinformatics
#index1219820
#% 
#!
  
#*The DICS repository: module-assisted analysis of disease-related gene lists.
#@Sabine Dietmann,Elisabeth Georgii,Alexey V. Antonov,Koji Tsuda,Hans-Werner Mewes
#t2009
#cBioinformatics
#index1219821
#% 
#!
  
#*Prioritizing risk pathways: a novel association approach to searching for disease pathways fusing SNPs and pathways.
#@Lina Chen,Liangcai Zhang,Yan Zhao,Liangde Xu,Yukui Shang,Qian Wang,Wan Li,Hong Wang,Xia Li
#t2009
#cBioinformatics
#index1219822
#% 
#!
  
#*FlexServ: an integrated tool for the analysis of protein flexibility.
#@Jordi Camps,Oliver Carrillo,Agustí Emperador,Laura Orellana,Adam Hospital,Manuel Rueda,Damjan Cicin-Sain,Marco D'Abramo,Josep Lluis Gelpí,Modesto Orozco
#t2009
#cBioinformatics
#index1219823
#% 
#!
  
#*PAnnBuilder: an R package for assembling proteomic annotation data.
#@Hong Li,Guohui Ding,Lu Xie,Yixue Li
#t2009
#cBioinformatics
#index1219824
#% 
#!
  
#*SIRIUS: decomposing isotope patterns for metabolite identification.
#@Sebastian Böcker,Matthias C. Letzel,Zsuzsanna Lipták,Anton Pervukhin
#t2009
#cBioinformatics
#index1219825
#% 
#!
  
#*Sequence-based prediction of protein interaction sites with an integrative method.
#@Xue-wen Chen,Jong Cheol Jeong
#t2009
#cBioinformatics
#index1219826
#% 
#!
  
#*Computing galled networks from real data.
#@Daniel H. Huson,Regula Rupp,Vincent Berry,Philippe Gambette,Christophe Paul
#t2009
#cBioinformatics
#index1219827
#% 
#!
  
#*RANKPROP: a web server for protein remote homology detection.
#@Iain Melvin,Jason Weston,Christina S. Leslie,William Stafford Noble
#t2009
#cBioinformatics
#index1219828
#% 
#!
  
#*ISMB/ECCB 2009 Stockholm.
#@Marie-France Sagot,B. J. Morrison McKay,Gene Myers
#t2009
#cBioinformatics
#index1219829
#% 
#!
  
#*Module networks revisited: computational assessment and prioritization of model predictions.
#@Anagha Joshi,Riet De Smet,Kathleen Marchal,Yves Van de Peer,Tom Michoel
#t2009
#cBioinformatics
#index1219830
#% 
#!
  
#*KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor.
#@Jitao David Zhang,Stefan Wiemann
#t2009
#cBioinformatics
#index1219831
#% 
#!
  
#*Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x.
#@Vincent J. Carey,Adam R. Davis,Michael F. Lawrence,Robert Gentleman,Benjamin A. Raby
#t2009
#cBioinformatics
#index1219832
#% 
#!
  
#*An integrative scoring system for ranking SNPs by their potential deleterious effects.
#@Phil Hyoun Lee,Hagit Shatkay
#t2009
#cBioinformatics
#index1219833
#% 
#!
  
#*A web application to perform linkage disequilibrium and linkage analyses on a computational grid.
#@Jules Hernández-Sánchez,Jean-Alain Grunchec,Sara Knott
#t2009
#cBioinformatics
#index1219834
#% 
#!
  
#*Programs for calculating the statistical powers of detecting susceptibility genes in case-control studies based on multistage designs.
#@Nobutaka Kitamura,Kouhei Akazawa,Akinori Miyashita,Ryozo Kuwano,Shin-ichi Toyabe,Junichiro Nakamura,Norihito Nakamura,Tatsuhiko Sato,M. Aminul Hoque
#t2009
#cBioinformatics
#index1219835
#% 
#!
  
#*Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature.
#@Jiansheng Wu,Hongde Liu,Xueye Duan,Yan Ding,Hongtao Wu,Yunfei Bai,Xiao Sun
#t2009
#cBioinformatics
#index1219836
#% 
#!
  
#*PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance.
#@Ankit Agrawal,Xiaoqiu Huang
#t2009
#cBioinformatics
#index1219837
#% 
#!
  
#*SAFEGUI: resampling-based tests of categorical significance in gene expression data made easy.
#@Daniel M. Gatti,Myroslav Sypa,Ivan Rusyn,Fred A. Wright,William T. Barry
#t2009
#cBioinformatics
#index1219838
#% 
#!
  
#*Predicting and understanding the stability of G-quadruplexes.
#@Oliver Stegle,Linda Payet,Jean-Louis Mergny,David J. C. MacKay,Julian Leon Huppert
#t2009
#cBioinformatics
#index1219839
#% 
#!
  
#*RNATOPS-W: a web server for RNA structure searches of genomes.
#@Yingfeng Wang,Zhibin Huang,Yong Wu,Russell L. Malmberg,Liming Cai
#t2009
#cBioinformatics
#index1219840
#% 
#!
  
#*TopHat: discovering splice junctions with RNA-Seq.
#@Cole Trapnell,Lior Pachter,Steven L. Salzberg
#t2009
#cBioinformatics
#index1219841
#% 
#!
  
#*A method and program for estimating graphical models for linkage disequilibrium that scale linearly with the number of loci, and their application to gene drop simulation.
#@Alun Thomas
#t2009
#cBioinformatics
#index1219842
#% 
#!
  
#*Variable slope normalization of reverse phase protein arrays.
#@E. Shannon Neeley,Steven M. Kornblau,Kevin R. Coombes,Keith A. Baggerly
#t2009
#cBioinformatics
#index1219843
#% 
#!
  
#*A graphical algorithm for fast computation of identity coefficients and generalized kinship coefficients.
#@Mark Abney
#t2009
#cBioinformatics
#index1219844
#% 
#!
  
#*DichroCalc - circular and linear dichroism online.
#@Benjamin M. Bulheller,Jonathan D. Hirst
#t2009
#cBioinformatics
#index1219845
#% 
#!
  
#*Serial dilution curve: a new method for analysis of reverse phase protein array data.
#@Li Zhang,Qingyi Wei,Li Mao,Wenbin Liu,Gordon B. Mills,Kevin R. Coombes
#t2009
#cBioinformatics
#index1219846
#% 
#!
  
#*BEsTRF: a tool for optimal resolution of terminal-restriction fragment length polymorphism analysis based on user-defined primer-enzyme-sequence databases.
#@Blaz Stres,James M. Tiedje,Bostjan Murovec
#t2009
#cBioinformatics
#index1219847
#% 
#!
  
#*PuMA: Bayesian analysis of partitioned (and unpartitioned) model adequacy.
#@Jeremy M. Brown,Robert ElDabaje
#t2009
#cBioinformatics
#index1219848
#% 
#!
  
#*All hits all the time: parameter-free calculation of spaced seed sensitivity.
#@Denise Y. F. Mak,Gary Benson
#t2009
#cBioinformatics
#index1219849
#% 
#!
  
#*Gclust: -kingdom classification of proteins using automatic individual threshold setting.
#@Naoki Sato
#t2009
#cBioinformatics
#index1219850
#% 
#!
  
#*A flexible two-stage procedure for identifying gene sets that are differentially expressed.
#@Ruth Heller,Elisabetta Manduchi,Gregory R. Grant,Warren J. Ewens
#t2009
#cBioinformatics
#index1219851
#% 
#!
  
#*Genome-wide association analysis by lasso penalized logistic regression.
#@Tong Tong Wu,Yi Fang Chen,Trevor Hastie,Eric M. Sobel,Kenneth Lange
#t2009
#cBioinformatics
#index1219852
#% 
#!
  
#*PADRE: a package for analyzing and displaying reticulate evolution.
#@Martin Lott,Andreas Spillner,Katharina T. Huber,Vincent Moulton
#t2009
#cBioinformatics
#index1219853
#% 
#!
  
#*INTEGRALL: a database and search engine for integrons, integrases and gene cassettes.
#@Alexandra Moura,Mário Soares,Carolina Pereira,Nuno Leitão,Isabel Henriques,António Correia
#t2009
#cBioinformatics
#index1219854
#% 
#!
  
#*Statistical inferences for isoform expression in RNA-Seq.
#@Hui Jiang,Wing Hung Wong
#t2009
#cBioinformatics
#index1219855
#% 
#!
  
#*Efficient exact motif discovery.
#@Tobias Marschall,Sven Rahmann
#t2009
#cBioinformatics
#index1219856
#% 
#!
  
#*Switching regulatory models of cellular stress response.
#@Guido Sanguinetti,Andreas Ruttor,Manfred Opper,Cédric Archambeau
#t2009
#cBioinformatics
#index1219857
#% 
#!
  
#*Sparse linear discriminant analysis for simultaneous testing for the significance of a gene set/pathway and gene selection.
#@Michael C. Wu,Lingsong Zhang,Zhaoxi Wang,David Christiani,Xihong Lin
#t2009
#cBioinformatics
#index1219858
#% 
#!
  
#*Predicting the binding preference of transcription factors to individual DNA -mers.
#@Trevis M. Alleyne,Lourdes Peña Castillo,Gwenael Badis,Shaheynoor Talukder,Michael F. Berger,Andrew R. Gehrke,Anthony A. Philippakis,Martha L. Bulyk,Quaid Morris,Timothy R. Hughes
#t2009
#cBioinformatics
#index1219859
#% 
#!
  
#*IslandViewer: an integrated interface for computational identification and visualization of genomic islands.
#@Morgan G. I. Langille,Fiona S. L. Brinkman
#t2009
#cBioinformatics
#index1219860
#% 
#!
  
#*WebGBrowse - a web server for GBrowse.
#@Ram Podicheti,Rajesh Gollapudi,Qunfeng Dong
#t2009
#cBioinformatics
#index1219861
#% 
#!
  
#*Accurate identification of orthologous segments among multiple genomes.
#@Tsuyoshi Hachiya,Yasunori Osana,Kris Popendorf,Yasubumi Sakakibara
#t2009
#cBioinformatics
#index1219862
#% 
#!
  
#*A robust peak detection method for RNA structure inference by high-throughput contact mapping.
#@Jinkyu Kim,Seunghak Yu,Byonghyo Shim,Hanjoo Kim,Hyeyoung Min,Eui-Young Chung,Rhiju Das,Sungroh Yoon
#t2009
#cBioinformatics
#index1219863
#% 
#!
  
#*Speeding up HMM algorithms for genetic linkage analysis via chain reductions of the state space.
#@Dan Geiger,Christopher Meek,Ydo Wexler
#t2009
#cBioinformatics
#index1219864
#% 
#!
  
#*Predicting protein function from domain content.
#@Kristoffer Forslund,Erik L. L. Sonnhammer
#t2009
#cBioinformatics
#index1219865
#% 
#!
  
#*The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding.
#@Izhar Wallach,Ryan H. Lilien
#t2009
#cBioinformatics
#index1219866
#% 
#!
  
#*analysis of promoter regions from cold-induced genes in rice ( L.) and reveals the importance of combinatorial control.
#@Angelica Lindlöf,Marcus Bräutigam,Aakash Chawade,Olof Olsson,Björn Olsson
#t2009
#cBioinformatics
#index1219867
#% 
#!
  
#*arrayQualityMetrics - a bioconductor package for quality assessment of microarray data.
#@Audrey Kauffmann,Robert Gentleman,Wolfgang Huber
#t2009
#cBioinformatics
#index1219868
#% 
#!
  
#*Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics.
#@Lee-Wei Yang,Eran Eyal,Ivet Bahar,Akio Kitao
#t2009
#cBioinformatics
#index1219869
#% 
#!
  
#*Conditional random pattern algorithm for LOH inference and segmentation.
#@Ling-Yun Wu,Xiaobo Zhou,Fuhai Li,Xiaorong Yang,Chung-Che Chang,Stephen T. C. Wong
#t2009
#cBioinformatics
#index1219870
#% 
#!
  
#*Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes.
#@Min Zhang,Lin Zhang,Jinfeng Zou,Chen Yao,Hui Xiao,Qing Liu,Jing Wang,Dong Wang,Chenguang Wang,Zheng Guo
#t2009
#cBioinformatics
#index1219871
#% 
#!
  
#*Identifying novel constrained elements by exploiting biased substitution patterns.
#@Manuel Garber,Mitchell Guttman,Michele E. Clamp,Michael C. Zody,Nir Friedman,Xiaohui Xie
#t2009
#cBioinformatics
#index1219872
#% 
#!
  
#*CPSP-web-tools: a server for 3D lattice protein studies.
#@Martin Mann,Cameron Smith,Mohamad Rabbath,Marlien Edwards,Sebastian Will,Rolf Backofen
#t2009
#cBioinformatics
#index1219873
#% 
#!
  
#*WSsas: a web service for the annotation of functional residues through structural homologues.
#@David Talavera,Roman A. Laskowski,Janet M. Thornton
#t2009
#cBioinformatics
#index1219874
#% 
#!
  
#*BIPA: a database for protein-nucleic acid interaction in 3D structures.
#@Semin Lee,Tom L. Blundell
#t2009
#cBioinformatics
#index1219875
#% 
#!
  
#*Domain-oriented edge-based alignment of protein interaction networks.
#@Xin Guo,Alexander J. Hartemink
#t2009
#cBioinformatics
#index1219876
#% 
#!
  
#*Toward a gold standard for promoter prediction evaluation.
#@Thomas Abeel,Yves Van de Peer,Yvan Saeys
#t2009
#cBioinformatics
#index1219877
#% 
#!
  
#*A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery.
#@Lei Xie,Li Xie,Philip E. Bourne
#t2009
#cBioinformatics
#index1219878
#% 
#!
  
#*Biopython: freely available Python tools for computational molecular biology and bioinformatics.
#@Peter J. A. Cock,Tiago Antao,Jeffrey T. Chang,Brad A. Chapman,Cymon J. Cox,Andrew Dalke,Iddo Friedberg,Thomas Hamelryck,Frank Kauff,Bartek Wilczynski,Michiel J. L. de Hoon
#t2009
#cBioinformatics
#index1219879
#% 
#!
  
#*Identification of structurally conserved residues of proteins in absence of structural homologs using neural network ensemble.
#@Ganesan Pugalenthi,E. Ke Tang,Ponnuthurai N. Suganthan,Saikat Chakrabarti
#t2009
#cBioinformatics
#index1219880
#% 
#!
  
#*SpliceAid: a database of experimental RNA target motifs bound by splicing proteins in humans.
#@Francesco Piva,Matteo Giulietti,Linda Nocchi,Giovanni Principato
#t2009
#cBioinformatics
#index1219881
#% 
#!
  
#*A consistency-based consensus algorithm for and reference-guided sequence assembly of short reads.
#@Tobias Rausch,Sergey Koren,Gennady Denisov,David Weese,Anne-Katrin Emde,Andreas Döring,Knut Reinert
#t2009
#cBioinformatics
#index1219882
#% 
#!
  
#*Globally optimal stitching of tiled 3D microscopic image acquisitions.
#@Stephan Preibisch,Stephan Saalfeld,Pavel Tomancak
#t2009
#cBioinformatics
#index1219883
#% 
#!
  
#*Transcriptionally active gene fragments derived from potentially fast-evolving donor genes in the rice genome.
#@Xiangfeng Wang,Zhihui Yu,Xiaozeng Yang,Xing Wang Deng,Lei Li
#t2009
#cBioinformatics
#index1219884
#% 
#!
  
#*The wisdom of the commons: ensemble tree classifiers for prostate cancer prognosis.
#@James A. Koziol,Anne C. Feng,Zhenyu Jia,Yipeng Wang,Seven Goodison,Michael McClelland,Dan Mercola
#t2009
#cBioinformatics
#index1219885
#% 
#!
  
#*Better bioinformatics through usability analysis.
#@Davide Bolchini,Anthony Finkelstein,Vito Perrone,Sylvia Nagl
#t2009
#cBioinformatics
#index1219886
#% 
#!
  
#*MICAlign: a sequence-to-structure alignment tool integrating multiple sources of information in conditional random fields.
#@Xuefeng Xia,Song Zhang,Yu Su,Zhirong Sun
#t2009
#cBioinformatics
#index1219887
#% 
#!
  
#*Correcting for ascertainment bias in the inference of population structure.
#@Gilles Guillot,Matthieu Foll
#t2009
#cBioinformatics
#index1219888
#% 
#!
  
#*Host-parasite relations of bacteria and phages can be unveiled by , a measure of relaxed sequence similarity.
#@Shamim Ahmed,Ayumu Saito,Miho Suzuki,Naoto Nemoto,Koichi Nishigaki
#t2009
#cBioinformatics
#index1219889
#% 
#!
  
#*Array-based genotyping in using semi-supervised clustering.
#@Richard Bourgon,Eugenio Mancera,Alessandro Brozzi,Lars M. Steinmetz,Wolfgang Huber
#t2009
#cBioinformatics
#index1219890
#% 
#!
  
#*The use of gene ontology evidence codes in preventing classifier assessment bias.
#@Mark F. Rogers,Asa Ben-Hur
#t2009
#cBioinformatics
#index1219891
#% 
#!
  
#*Prediction of translation initiation site for microbial genomes with TriTISA.
#@Gang-Qing Hu,Xiaobin Zheng,Huaiqiu Zhu,Zhen-Su She
#t2009
#cBioinformatics
#index1219892
#% 
#!
  
#*SIMoNe: Statistical Inference for MOdular NEtworks.
#@Julien Chiquet,Alexander Smith,Gilles Grasseau,Catherine Matias,Christophe Ambroise
#t2009
#cBioinformatics
#index1219893
#% 
#!
  
#*Enumeration of condition-dependent dense modules in protein interaction networks.
#@Elisabeth Georgii,Sabine Dietmann,Takeaki Uno,Philipp Pagel,Koji Tsuda
#t2009
#cBioinformatics
#index1219894
#% 
#!
  
#*Editorial.
#@Alex Bateman,John Quackenbush
#t2009
#cBioinformatics
#index1219895
#% 
#!
  
#*Flexible structural protein alignment by a sequence of local transformations.
#@Jairo Rocha,Joan Segura,Richard C. Wilson,Swagata Dasgupta
#t2009
#cBioinformatics
#index1219896
#% 
#!
  
#*DISCOVER: a feature-based discriminative method for motif search in complex genomes.
#@Wenjie Fu,Pradipta Ray,Eric P. Xing
#t2009
#cBioinformatics
#index1219897
#% 
#!
  
#*bioDBnet: the biological database network.
#@Uma Mudunuri,Anney Che,Ming Yi,Robert M. Stephens
#t2009
#cBioinformatics
#index1219898
#% 
#!
  
#*Artefacts and biases affecting the evaluation of scoring functions on decoy sets for protein structure prediction.
#@Julia Handl,Joshua D. Knowles,Simon C. Lovell
#t2009
#cBioinformatics
#index1219899
#% 
#!
  
#*MOTIFATOR: detection and characterization of regulatory motifs using prokaryote transcriptome data.
#@Evert-Jan Blom,Jos B. T. M. Roerdink,Oscar P. Kuipers,Sacha A. F. T. van Hijum
#t2009
#cBioinformatics
#index1219900
#% 
#!
  
#*A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods.
#@Henrik Bengtsson,Amrita Ray,Paul T. Spellman,Terence P. Speed
#t2009
#cBioinformatics
#index1219901
#% 
#!
  
#*Fast computation of neighbor seeds.
#@Lucian Ilie,Silvana Ilie
#t2009
#cBioinformatics
#index1219902
#% 
#!
  
#*Computationally feasible estimation of haplotype frequencies from pooled DNA with and without Hardy-Weinberg equilibrium.
#@Anthony Y. C. Kuk,Han Zhang,Yaning Yang
#t2009
#cBioinformatics
#index1219903
#% 
#!
  
#*Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions.
#@Kevin Y. Yip,Mark Gerstein
#t2009
#cBioinformatics
#index1219904
#% 
#!
  
#*A flexible rank-based framework for detecting copy number aberrations from array data.
#@Thomas LaFramboise,Wendy Winckler,Roman K. Thomas
#t2009
#cBioinformatics
#index1219905
#% 
#!
  
#*KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways.
#@Irena Spasic,Evangelos Simeonidis,Hanan L. Messiha,Norman W. Paton,Douglas B. Kell
#t2009
#cBioinformatics
#index1219906
#% 
#!
  
#*MAGETabulator, a suite of tools to support the microarray data format MAGE-TAB.
#@Tim F. Rayner,Faisal Ibne Rezwan,Margus Lukk,Xiangqun Zheng Bradley,Anna Farne,Ele Holloway,James Malone,Eleanor Williams,Helen E. Parkinson
#t2009
#cBioinformatics
#index1219907
#% 
#!
  
#*Allergen Atlas: a comprehensive knowledge center and analysis resource for allergen information.
#@Joo Chuan Tong,Shen Jean Lim,Hon Cheng Muh,Fook Tim Chew,Martti T. Tammi
#t2009
#cBioinformatics
#index1219908
#% 
#!
  
#*Network-based prediction of metabolic enzymes' subcellular localization.
#@Shira Mintz-Oron,Asaph Aharoni,Eytan Ruppin,Tomer Shlomi
#t2009
#cBioinformatics
#index1219909
#% 
#!
  
#*SIMPRO: simple protein homology detection method by using indirect signals.
#@Inkyung Jung,Dongsup Kim
#t2009
#cBioinformatics
#index1219910
#% 
#!
  
#*Papers on normalization, variable selection, classification or clustering of microarray data.
#@David M. Rocke,Trey Ideker,Olga G. Troyanskaya,John Quackenbush,Joaquín Dopazo
#t2009
#cBioinformatics
#index1219911
#% 
#!
  
#*Evaluation of genome-wide association study results through development of ontology fingerprints.
#@Lam C. Tsoi,Michael Boehnke,Richard L. Klein,W. Jim Zheng
#t2009
#cBioinformatics
#index1219912
#% 
#!
  
#*A novel method for large tree visualization.
#@Jeff Heard,William Kaufmann,Xiaojun Guan
#t2009
#cBioinformatics
#index1219913
#% 
#!
  
#*Detecting glycan cancer biomarkers in serum samples using MALDI FT-ICR mass spectrometry data.
#@Donald A. Barkauskas,Hyun Joo An,Scott R. Kronewitter,Maria Lorna de Leoz,Helen K. Chew,Ralph W. de Vere White,Gary S. Leiserowitz,Suzanne Miyamoto,Carlito B. Lebrilla,David M. Rocke
#t2009
#cBioinformatics
#index1219914
#% 
#!
  
#*Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organisms.
#@Triinu Koressaar,Kai Jõers,Maido Remm
#t2009
#cBioinformatics
#index1219915
#% 
#!
  
#*New evaluation measures for multifactor dimensionality reduction classifiers in gene-gene interaction analysis.
#@Junghyun Namkung,Kyunga Kim,Sung-Gon Yi,Wonil Chung,Min-Seok Kwon,Taesung Park
#t2009
#cBioinformatics
#index1219916
#% 
#!
  
#*Accurate identification of orthologous segments among multiple genomes.
#@Tsuyoshi Hachiya,Yasunori Osana,Kris Popendorf,Yasubumi Sakakibara
#t2009
#cBioinformatics
#index1219917
#% 
#!
  
#*CloudBurst: highly sensitive read mapping with MapReduce.
#@Michael C. Schatz
#t2009
#cBioinformatics
#index1219918
#% 
#!
  
#*Gene regulation in the intraerythrocytic cycle of .
#@Rasa Jurgelenaite,Tjeerd Dijkstra,Clemens H. M. Kocken,Tom Heskes
#t2009
#cBioinformatics
#index1219919
#% 
#!
  
#*Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions.
#@Géraldine Del Mondo,Damien Eveillard,Irena Rusu
#t2009
#cBioinformatics
#index1219920
#% 
#!
  
#*Prediction of RNA secondary structure using generalized centroid estimators.
#@Michiaki Hamada,Hisanori Kiryu,Kengo Sato,Toutai Mituyama,Kiyoshi Asai
#t2009
#cBioinformatics
#index1219921
#% 
#!
  
#*MapView: visualization of short reads alignment on a desktop computer.
#@Hua Bao,Hui Guo,Jinwei Wang,Renchao Zhou,Xuemei Lu,Suhua Shi
#t2009
#cBioinformatics
#index1219922
#% 
#!
  
#*From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations.
#@Pan Du,Gang Feng,Jared Flatow,Jie Song,Michelle Holko,Warren A. Kibbe,Simon M. Lin
#t2009
#cBioinformatics
#index1219923
#% 
#!
  
#*The Flannotator - a gene and protein expression annotation tool for .
#@E. Ryder,H. Spriggs,E. Drummond,D. St Johnston,Steven Russell
#t2009
#cBioinformatics
#index1219924
#% 
#!
  
#*Smoothing waves in array CGH tumor profiles.
#@Mark A. van de Wiel,Rebecca Brosens,Paul H. C. Eilers,Candy Kumps,Gerrit Meijer,Björn Menten,Erik Sistermans,Frank Speleman,Marieke E. Timmerman,Bauke Ylstra
#t2009
#cBioinformatics
#index1219925
#% 
#!
  
#*VANO: a volume-object image annotation system.
#@Hanchuan Peng,Fuhui Long,Eugene W. Myers
#t2009
#cBioinformatics
#index1219926
#% 
#!
  
#*MS-specific noise model reveals the potential of iTRAQ in quantitative proteomics.
#@Claudia Hundertmark,R. Fischer,T. Reinl,S. May,Frank Klawonn,Lothar Jänsch
#t2009
#cBioinformatics
#index1219927
#% 
#!
  
#*GeNGe: systematic generation of gene regulatory networks.
#@Hendrik Hache,Christoph K. Wierling,Hans Lehrach,Ralf Herwig
#t2009
#cBioinformatics
#index1219928
#% 
#!
  
#*CRONOS: the cross-reference navigation server.
#@Brigitte Waegele,Irmtraud Dunger-Kaltenbach,Gisela Fobo,Corinna Montrone,Hans-Werner Mewes,Andreas Ruepp
#t2009
#cBioinformatics
#index1219929
#% 
#!
  
#*Aneuploidy prediction and tumor classification with heterogeneous hidden conditional random fields.
#@Zafer Barutçuoglu,Edoardo M. Airoldi,Vanessa Dumeaux,Robert E. Schapire,Olga G. Troyanskaya
#t2009
#cBioinformatics
#index1219930
#% 
#!
  
#*Reference alignment of SNP microarray signals for copy number analysis of tumors.
#@Stan Pounds,Cheng Cheng,Charles Mullighan,Susana C. Raimondi,Sheila Shurtleff,James R. Downing
#t2009
#cBioinformatics
#index1219931
#% 
#!
  
#*TEclass - a tool for automated classification of unknown eukaryotic transposable elements.
#@György Abrusán,Norbert Grundmann,Luc DeMester,Wojciech Makalowski
#t2009
#cBioinformatics
#index1219932
#% 
#!
  
#*CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets.
#@Charles Addo-Quaye,Webb Miller,Michael J. Axtell
#t2009
#cBioinformatics
#index1219933
#% 
#!
  
#*AmiGO: online access to ontology and annotation data.
#@Seth Carbon,Amelia Ireland,Christopher J. Mungall,ShengQiang Shu,Brad Marshall,Suzanna Lewis
#t2009
#cBioinformatics
#index1219934
#% 
#!
  
#*PICKY: a novel SVD-based NMR spectra peak picking method.
#@Babak Alipanahi,Xin Gao,Emre Karakoç,Logan Donaldson,Ming Li
#t2009
#cBioinformatics
#index1219935
#% 
#!
  
#*REPETITA: detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform.
#@Luca Marsella,Francesco Sirocco,Antonio Trovato,Flavio Seno,Silvio C. E. Tosatto
#t2009
#cBioinformatics
#index1219936
#% 
#!
  
#*SBML2LTX: Conversion of SBML files into human-readable reports.
#@Andreas Dräger,Hannes Planatscher,Dieudonné Motsou Wouamba,Adrian Schröder,Michael Hucka,Lukas Endler,Martin Golebiewski,Wolfgang Müller,Andreas Zell
#t2009
#cBioinformatics
#index1219937
#% 
#!
  
#*QMSim: a large-scale genome simulator for livestock.
#@Mehdi Sargolzaei,Flavio S. Schenkel
#t2009
#cBioinformatics
#index1219938
#% 
#!
  
#*A novel meta-analysis method exploiting consistency of high-throughput experiments.
#@Satwik Rajaram
#t2009
#cBioinformatics
#index1219939
#% 
#!
  
#*A framework to refine particle clusters produced by EMAN.
#@Liya Fan,Fa Zhang,Gongming Wang,Zhiyong Liu
#t2009
#cBioinformatics
#index1219940
#% 
#!
  
#*Biodiversity informatics: automated approaches for documenting global biodiversity patterns and processes.
#@Robert P. Guralnick,Andrew W. Hill
#t2009
#cBioinformatics
#index1219941
#% 
#!
  
#*Non-negative matrix factorization of gene expression profiles: a plug-in for BRB-ArrayTools.
#@Qihao Qi,Yingdong Zhao,Ming-Chung Li,Richard Simon
#t2009
#cBioinformatics
#index1219942
#% 
#!
  
#*: effective classification of pre-miRNAs for human miRNA gene prediction.
#@Rukshan Batuwita,Vasile Palade
#t2009
#cBioinformatics
#index1219943
#% 
#!
  
#*Fluctuation AnaLysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbrück fluctuation analysis.
#@Brandon M. Hall,Chang-Xing Ma,Ping Liang,Keshav K. Singh
#t2009
#cBioinformatics
#index1219944
#% 
#!
  
#*Graph theoretical approach to study eQTL: a case study of .
#@Yang Huang,Stefan Wuchty,Michael T. Ferdig,Teresa M. Przytycka
#t2009
#cBioinformatics
#index1219945
#% 
#!
  
#*penalizedSVM: a R-package for feature selection SVM classification.
#@Natalia Becker,Wiebke Werft,Grischa Toedt,Peter Lichter,Axel Benner
#t2009
#cBioinformatics
#index1219946
#% 
#!
  
#*A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas.
#@Fred P. Davis,Sean R. Eddy
#t2009
#cBioinformatics
#index1219947
#% 
#!
  
#*Clustered alignments of gene-expression time series data.
#@Adam A. Smith,Aaron L. Vollrath,Christopher A. Bradfield,Mark Craven
#t2009
#cBioinformatics
#index1219948
#% 
#!
  
#*GS: an efficiently computable measure of GO-based similarity of gene sets.
#@Troy A. Ruths,Derek A. Ruths,Luay Nakhleh
#t2009
#cBioinformatics
#index1219949
#% 
#!
  
#*Identification of microRNA regulatory modules in via a probabilistic graphical model.
#@Je-Gun Joung,Zhangjun Fei
#t2009
#cBioinformatics
#index1219950
#% 
#!
  
#*CoCAS: a ChIP-on-chip analysis suite.
#@Touati Benoukraf,Pierre Cauchy,Romain Fenouil,Adrien Jeanniard,Frederic Koch,Sébastien Jaeger,Denis Thieffry,Jean Imbert,Jean-Christophe Andrau,Salvatore Spicuglia,Pierre Ferrier
#t2009
#cBioinformatics
#index1219951
#% 
#!
  
#*Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts.
#@Patrik Björkholm,Pawel Daniluk,Andriy Kryshtafovych,Krzysztof Fidelis,Robin Andersson,Torgeir R. Hvidsten
#t2009
#cBioinformatics
#index1219952
#% 
#!
  
#*Pokefind: a novel topological filter for use with protein structure prediction.
#@Firas Khatib,Carol A. Rohl,Kevin Karplus
#t2009
#cBioinformatics
#index1219953
#% 
#!
  
#*A Classifier-based approach to identify genetic similarities between diseases.
#@Marc A. Schaub,Irene M. Kaplow,Marina Sirota,Chuong B. Do,Atul J. Butte,Serafim Batzoglou
#t2009
#cBioinformatics
#index1219954
#% 
#!
  
#*A new -acting regulatory element driving gene expression in the zebrafish pineal gland.
#@Shahar Alon,Eli Eisenberg,Jasmine Jacob-Hirsch,Gideon Rechavi,Gad Vatine,Reiko Toyama,Steven L. Coon,David C. Klein,Yoav Gothilf
#t2009
#cBioinformatics
#index1219955
#% 
#!
  
#*Automated procedure for candidate compound selection in GC-MS metabolomics based on prediction of Kovats retention index.
#@V. V. Mihaleva,H. A. Verhoeven,R. C. H. de Vos,R. D. Hall,Roeland C. H. J. van Ham
#t2009
#cBioinformatics
#index1219956
#% 
#!
  
#*Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner.
#@David V. Lu,Randall H. Brown,Manimozhiyan Arumugam,Michael R. Brent
#t2009
#cBioinformatics
#index1219957
#% 
#!
  
#*Differential dependency network analysis to identify condition-specific topological changes in biological networks.
#@Bai Zhang,Huai Li,Rebecca B. Riggins,Ming Zhan,Jianhua Xuan,Zhen Zhang,Eric P. Hoffman,Robert Clarke,Yue Wang
#t2009
#cBioinformatics
#index1219958
#% 
#!
  
#*FastMap: Fast eQTL mapping in homozygous populations.
#@Daniel M. Gatti,Andrey A. Shabalin,Tieu-Chong Lam,Fred A. Wright,Ivan Rusyn,Andrew B. Nobel
#t2009
#cBioinformatics
#index1219959
#% 
#!
  
#*In response to comment on 'A congruence index for testing topological similarity between trees'.
#@Damien M. de Vienne,Tatiana Giraud,Olivier C. Martin
#t2009
#cBioinformatics
#index1219960
#% 
#!
  
#*A novel comprehensive wave-form MS data processing method.
#@Shuo Chen,Ming Li,Don Hong,Dean Billheimer,Huiming Li,Baogang J. Xu,Yu Shyr
#t2009
#cBioinformatics
#index1219961
#% 
#!
  
#*MFEprimer: multiple factor evaluation of the specificity of PCR primers.
#@Wubin Qu,Zhiyong Shen,Dongsheng Zhao,Yi Yang,Chenggang Zhang
#t2009
#cBioinformatics
#index1219962
#% 
#!
  
#*Site of metabolism prediction for six biotransformations mediated by cytochromes P450.
#@Mingyue Zheng,Xiaomin Luo,Qiancheng Shen,Yong Wang,Yun Du,Weiliang Zhu,Hualiang Jiang
#t2009
#cBioinformatics
#index1219963
#% 
#!
  
#*Phylogenetic inference under recombination using Bayesian stochastic topology selection.
#@Alex Webb,John M. Hancock,Christopher C. Holmes
#t2009
#cBioinformatics
#index1219964
#% 
#!
  
#*MIST: Maximum Information Spanning Trees for dimension reduction of biological data sets.
#@Bracken M. King,Bruce Tidor
#t2009
#cBioinformatics
#index1219965
#% 
#!
  
#*Infernal 1.0: inference of RNA alignments.
#@Eric P. Nawrocki,Diana L. Kolbe,Sean R. Eddy
#t2009
#cBioinformatics
#index1219966
#% 
#!
  
#*Augmented training of hidden Markov models to recognize remote homologs via simulated evolution.
#@Anoop Kumar,Lenore Cowen
#t2009
#cBioinformatics
#index1219967
#% 
#!
  
#*Multi-locus match probability in a finite population: a fundamental difference between the Moran and Wright-Fisher models.
#@Anand Bhaskar,Yun S. Song
#t2009
#cBioinformatics
#index1219968
#% 
#!
  
#*Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templates.
#@R. Matthew Ward,Eric Venner,Bryce Daines,Stephen Murray,Serkan Erdin,David M. Kristensen,Olivier Lichtarge
#t2009
#cBioinformatics
#index1219969
#% 
#!
  
#*A web-based software system for dynamic gene cluster comparison across multiple genomes.
#@Kashi Vishwanath Revanna,Vivek Krishnakumar,Qunfeng Dong
#t2009
#cBioinformatics
#index1219970
#% 
#!
  
#*A Bayesian segmentation approach to ascertain copy number variations at the population level.
#@Long Yang Wu,Hugh A. Chipman,Shelley B. Bull,Laurent Briollais,Kesheng Wang
#t2009
#cBioinformatics
#index1219971
#% 
#!
  
#*E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.
#@Yoshihiro Yamanishi,Masahiro Hattori,Masaaki Kotera,Susumu Goto,Minoru Kanehisa
#t2009
#cBioinformatics
#index1219972
#% 
#!
  
#*DASher: a stand-alone protein sequence client for DAS, the Distributed Annotation System.
#@David N. Messina,Erik L. L. Sonnhammer
#t2009
#cBioinformatics
#index1219973
#% 
#!
  
#*A novel signaling pathway impact analysis.
#@Adi L. Tarca,Sorin Draghici,Purvesh Khatri,Sonia S. Hassan,Pooja Mittal,Jung-sun Kim,Chong Jai Kim,Juan Pedro Kusanovic,Roberto Romero
#t2009
#cBioinformatics
#index1219974
#% 
#!
  
#*Joint estimation of gene conversion rates and mean conversion tract lengths from population SNP data.
#@Junming Yin,Michael I. Jordan,Yun S. Song
#t2009
#cBioinformatics
#index1219975
#% 
#!
  
#*Fewer permutations, more accurate -values.
#@Theo A. Knijnenburg,Lodewyk F. A. Wessels,Marcel J. T. Reinders,Ilya Shmulevich
#t2009
#cBioinformatics
#index1219976
#% 
#!
  
#*Retention time alignment algorithms for LC/MS data must consider non-linear shifts.
#@Katharina Podwojski,Arno Fritsch,Daniel C. Chamrad,Wolfgang Paul,Barbara Sitek,Kai Stühler,Petra Mutzel,Christian Stephan,Helmut E. Meyer,Wolfgang Urfer,Katja Ickstadt,Jörg Rahnenführer
#t2009
#cBioinformatics
#index1219977
#% 
#!
  
#*Matching methods for observational microarray studies.
#@Ruth Heller,Elisabetta Manduchi,Dylan S. Small
#t2009
#cBioinformatics
#index1219978
#% 
#!
  
#*CGAS: comparative genomic analysis server.
#@Masumi Itoh,Hidemi Watanabe
#t2009
#cBioinformatics
#index1219979
#% 
#!
  
#*The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistance.
#@Robert J. Gifford,Tommy F. Liu,Soo-Yon Rhee,Mark Kiuchi,Stephane Hue,Deenan Pillay,Robert W. Shafer
#t2009
#cBioinformatics
#index1219980
#% 
#!
  
#*: an open software platform for force spectroscopy.
#@Massimo Sandal,Fabrizio Benedetti,Marco Brucale,Alberto Gomez-Casado,Bruno Samorì
#t2009
#cBioinformatics
#index1219981
#% 
#!
  
#*Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods.
#@Hao Zhang,Claus Lundegaard,Morten Nielsen
#t2009
#cBioinformatics
#index1219982
#% 
#!
  
#*ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks.
#@Gabriela Bindea,Bernhard Mlecnik,Hubert Hackl,Pornpimol Charoentong,Marie Tosolini,Amos Kirilovsky,Wolf-Herman Fridman,Franck Pagès,Zlatko Trajanoski,Jérôme Galon
#t2009
#cBioinformatics
#index1219983
#% 
#!
  
#*Graphical methods for quantifying macromolecules through bright field imaging.
#@Hang Chang,Rosa Anna DeFilippis,Thea D. Tlsty,Bahram Parvin
#t2009
#cBioinformatics
#index1219984
#% 
#!
  
#*Decomposition of complex microbial behaviors into resource-based stress responses.
#@Ross P. Carlson
#t2009
#cBioinformatics
#index1219985
#% 
#!
  
#*TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops.
#@Iain Milne,Dominik Lindner,Micha Bayer,Dirk Husmeier,Gráinne McGuire,David F. Marshall,Frank Wright
#t2009
#cBioinformatics
#index1219986
#% 
#!
  
#*IGG3: a tool to rapidly integrate large genotype datasets for whole-genome imputation and individual-level meta-analysis.
#@Miao-Xin Li,Lin Jiang,Patrick Yu-Ping Kao,Pak Chung Sham,You-Qiang Song
#t2009
#cBioinformatics
#index1219987
#% 
#!
  
#*ELISA-BASE: an integrated bioinformatics tool for analyzing and tracking ELISA microarray data.
#@Amanda M. White,James R. Collett,Shannon L. Seurynck-Servoss,Don Simone Daly,Richard C. Zangar
#t2009
#cBioinformatics
#index1219988
#% 
#!
  
#*Seevolution: visualizing chromosome evolution.
#@Andrés Esteban-Marcos,Aaron E. Darling,Mark A. Ragan
#t2009
#cBioinformatics
#index1219989
#% 
#!
  
#*ATOM: a powerful gene-based association test by combining optimally weighted markers.
#@Mingyao Li,Kai Wang,Struan F. A. Grant,Hakon Hakonarson,Chun Li
#t2009
#cBioinformatics
#index1219990
#% 
#!
  
#*RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens.
#@Nora Rieber,Bettina Knapp,Roland Eils,Lars Kaderali
#t2009
#cBioinformatics
#index1219991
#% 
#!
  
#*Disperse - a software system for design of selector probes for exon resequencing applications.
#@J. Stenberg,M. Zhang,H. Ji
#t2009
#cBioinformatics
#index1219992
#% 
#!
  
#*Can sugars be produced from fatty acids? A test case for pathway analysis tools.
#@Luis F. de Figueiredo,Stefan Schuster,Christoph Kaleta,David A. Fell
#t2009
#cBioinformatics
#index1219993
#% 
#!
  
#*Simulation of large-scale rule-based models.
#@Joshua Colvin,Michael I. Monine,James R. Faeder,William S. Hlavacek,Daniel D. Von Hoff,Richard G. Posner
#t2009
#cBioinformatics
#index1219994
#% 
#!
  
#*Domain Interaction Footprint: a multi-classification approach to predict domain-peptide interactions.
#@Christian Schillinger,Prisca Boisguerin,Gerd Krause
#t2009
#cBioinformatics
#index1219995
#% 
#!
  
#*KEPE - a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors.
#@Francesca Diella,Sophie Chabanis-Davidson,Katja Luck,Claudia Chica,Chenna Ramu,Claus Nerlov,Toby J. Gibson
#t2009
#cBioinformatics
#index1219996
#% 
#!
  
#*A new ensemble-based algorithm for identifying breath gas marker candidates in liver disease using ion molecule reaction mass spectrometry.
#@Michael Netzer,Gunda Millonig,Melanie Osl,Bernhard Pfeifer,Siegfried Praun,Johannes Villinger,Wolfgang Vogel,Christian Baumgartner
#t2009
#cBioinformatics
#index1219997
#% 
#!
  
#*A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide.
#@Jonathan D. Wren
#t2009
#cBioinformatics
#index1219998
#% 
#!
  
#*GetBonNie for building, analyzing and sharing rule-based models.
#@Bin Hu,G. Matthew Fricke,James R. Faeder,Richard G. Posner,William S. Hlavacek
#t2009
#cBioinformatics
#index1219999
#% 
#!
  
#*Benchmarks for identification of ordinary differential equations from time series data.
#@Peter Gennemark,Dag Wedelin
#t2009
#cBioinformatics
#index1220000
#% 
#!
  
#*DNAPlotter: circular and linear interactive genome visualization.
#@Tim J. Carver,Nick Thomson,Alan J. Bleasby,Matthew Berriman,Julian Parkhill
#t2009
#cBioinformatics
#index1220001
#% 
#!
  
#*PASS: a program to align short sequences.
#@Davide Campagna,Alessandro Albiero,Alessandra Bilardi,Elisa Caniato,Claudio Forcato,Svetlin Manavski,Nicola Vitulo,Giorgio Valle
#t2009
#cBioinformatics
#index1220002
#% 
#!
  
#*List-decoding methods for inferring polynomials in finite dynamical gene network models.
#@Janis Dingel,Olgica Milenkovic
#t2009
#cBioinformatics
#index1220003
#% 
#!
  
#*MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions.
#@Emilie Chautard,Lionel Ballut,Nicolas Thierry-Mieg,Sylvie Ricard-Blum
#t2009
#cBioinformatics
#index1220004
#% 
#!
  
#*Probabilistic retrieval and visualization of biologically relevant microarray experiments.
#@José Caldas,Nils Gehlenborg,Ali Faisal,Alvis Brazma,Samuel Kaski
#t2009
#cBioinformatics
#index1220005
#% 
#!
  
#*A modified hyperplane clustering algorithm allows for efficient and accurate clustering of extremely large datasets.
#@Ashok Sharma,Robert Podolsky,Jieping Zhao,Richard A. McIndoe
#t2009
#cBioinformatics
#index1220006
#% 
#!
  
#*A novel parallel approach to the likelihood-based estimation of admixture in population genetics.
#@Ambra Giovannini,Gaetano Zanghirati,Mark A. Beaumont,Lounès Chikhi,Guido Barbujani
#t2009
#cBioinformatics
#index1220007
#% 
#!
  
#*KELLER: estimating time-varying interactions between genes.
#@Le Song,Mladen Kolar,Eric P. Xing
#t2009
#cBioinformatics
#index1220008
#% 
#!
  
#*A geometric approach for classification and comparison of structural variants.
#@Suzanne S. Sindi,Elena Helman,Ali Bashir,Benjamin J. Raphael
#t2009
#cBioinformatics
#index1220009
#% 
#!
  
#*A divide-and-conquer approach to analyze underdetermined biochemical models.
#@Oliver Kotte,Matthias Heinemann
#t2009
#cBioinformatics
#index1220010
#% 
#!
  
#*SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies.
#@Can Yang,Zengyou He,Xiang Wan,Qiang Yang,Hong Xue,Weichuan Yu
#t2009
#cBioinformatics
#index1220011
#% 
#!
  
#*The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding.
#@Hao Zhang,Ole Lund,Morten Nielsen
#t2009
#cBioinformatics
#index1220012
#% 
#!
  
#*Genetic modification of flux for flux prediction of mutants.
#@Quanyu Zhao,Hiroyuki Kurata
#t2009
#cBioinformatics
#index1220013
#% 
#!
  
#*MOM: maximum oligonucleotide mapping.
#@Hugh L. Eaves,Yuan Gao
#t2009
#cBioinformatics
#index1220014
#% 
#!
  
#*Bayesian robust analysis for genetic architecture of quantitative traits.
#@Runqing Yang,Xin Wang,Jian Li,Hong-Wen Deng
#t2009
#cBioinformatics
#index1220015
#% 
#!
  
#*Integrating shotgun proteomics and mRNA expression data to improve protein identification.
#@Smriti R. Ramakrishnan,Christine Vogel,John T. Prince,Rong Wang,Zhihua Li,Luiz O. Penalva,Margaret Myers,Edward M. Marcotte,Daniel P. Miranker
#t2009
#cBioinformatics
#index1220016
#% 
#!
  
#*The analysis of inconsistencies between cytogenetic annotations and sequence mapping by defining the imprecision zones of cytogenetic banding.
#@Kuo-Ho Yen,Chung-Liang Ho,Chiang Lee
#t2009
#cBioinformatics
#index1220017
#% 
#!
  
#*A stochastic model for the evolution of metabolic networks with neighbor dependence.
#@Aziz Mithani,Gail M. Preston,Jotun Hein
#t2009
#cBioinformatics
#index1220018
#% 
#!
  
#*rHVDM: an R package to predict the activity and targets of a transcription factor.
#@Martino Barenco,E. Papouli,S. Shah,Daniel Brewer,C. J. Miller,Michael Hubank
#t2009
#cBioinformatics
#index1220019
#% 
#!
  
#*Structure similarity measure with penalty for close non-equivalent residues.
#@Ruslan Sadreyev,Shuoyong Shi,David Baker,Nick V. Grishin
#t2009
#cBioinformatics
#index1220020
#% 
#!
  
#*Identifying functional modules using expression profiles and confidence-scored protein interactions.
#@Igor Ulitsky,Ron Shamir
#t2009
#cBioinformatics
#index1220021
#% 
#!
  
#*Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype.
#@John Watkinson,Dimitris Anastassiou
#t2009
#cBioinformatics
#index1220022
#% 
#!
  
#*A predictive model for identifying mini-regulatory modules in the mouse genome.
#@Mahesh Yaragatti,Ted Sandler,Lyle H. Ungar
#t2009
#cBioinformatics
#index1220023
#% 
#!
  
#*Modeling stochasticity and robustness in gene regulatory networks.
#@Abhishek Garg,Kartik Mohanram,Alessandro Di Cara,Giovanni De Micheli,Ioannis Xenarios
#t2009
#cBioinformatics
#index1220024
#% 
#!
  
#*Multivariate analysis of variance test for gene set analysis.
#@Chen-An Tsai,James J. Chen
#t2009
#cBioinformatics
#index1220025
#% 
#!
  
#*CROC: finding chromosomal clusters in eukaryotic genomes.
#@Miguel Pignatelli,Florenci Serras,Andrés Moya,Roderic Guigó,Montserrat Corominas
#t2009
#cBioinformatics
#index1220026
#% 
#!
  
#*Gene-disease relationship discovery based on model-driven data integration and database view definition.
#@S. Yilmaz,P. Jonveaux,C. Bicep,L. Pierron,Malika Smaïl-Tabbone,Marie-Dominique Devignes
#t2009
#cBioinformatics
#index1220027
#% 
#!
  
#*SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.
#@Junguk Hur,Adam D. Schuyler,David J. States,Eva L. Feldman
#t2009
#cBioinformatics
#index1220028
#% 
#!
  
#*ProtorP: a protein-protein interaction analysis server.
#@Christopher Reynolds,David Damerell,Susan Jones
#t2009
#cBioinformatics
#index1220029
#% 
#!
  
#*Local RNA structure alignment with incomplete sequence.
#@Diana L. Kolbe,Sean R. Eddy
#t2009
#cBioinformatics
#index1220030
#% 
#!
  
#*Jalview Version 2 - a multiple sequence alignment editor and analysis workbench.
#@Andrew M. Waterhouse,James B. Procter,David M. A. Martin,Michele E. Clamp,Geoffrey J. Barton
#t2009
#cBioinformatics
#index1220031
#% 
#!
  
#*Structural profiles of human miRNA families from pairwise clustering.
#@Bogumil Kaczkowski,Elfar Torarinsson,Kristin Reiche,Jakob Hull Havgaard,Peter F. Stadler,Jan Gorodkin
#t2009
#cBioinformatics
#index1220032
#% 
#!
  
#*Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling.
#@Armando Reyes-Palomares,Raúl Montañez,Alejandro Real-Chicharro,Othmane Chniber,Amine Kerzazi,Ismael Navas Delgado,Miguel Angel Medina,José Francisco Aldana Montes,Francisca Sánchez-Jiménez
#t2009
#cBioinformatics
#index1220033
#% 
#!
  
#*A hierarchical model for incomplete alignments in phylogenetic inference.
#@Fuxia Cheng,Stefanie Hartmann,Mayetri Gupta,Joseph G. Ibrahim,Todd J. Vision
#t2009
#cBioinformatics
#index1220034
#% 
#!
  
#*Gene expression trends and protein features effectively complement each other in gene function prediction.
#@Krzysztof Wabnik,Torgeir R. Hvidsten,Anna Kedzierska,Jelle Van Leene,Geert De Jaeger,Gerrit T. S. Beemster,Henryk Jan Komorowski,Martin T. R. Kuiper
#t2009
#cBioinformatics
#index1220035
#% 
#!
  
#*LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures.
#@Michael Ryan,Mark Diekhans,Stephanie Lien,Yun Liu,Rachel Karchin
#t2009
#cBioinformatics
#index1220036
#% 
#!
  
#*Statistical model for whole genome sequencing and its application to minimally invasive diagnosis of fetal genetic disease.
#@Tianjiao Chu,Kimberly Bunce,W. Allen Hogge,David G. Peters
#t2009
#cBioinformatics
#index1220037
#% 
#!
  
#*MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context.
#@Rutger W. W. Brouwer,Sacha A. F. T. van Hijum,Oscar P. Kuipers
#t2009
#cBioinformatics
#index1220038
#% 
#!
  
#*Precision and recall estimates for two-hybrid screens.
#@Hailiang Huang,Joel S. Bader
#t2009
#cBioinformatics
#index1220039
#% 
#!
  
#*Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery.
#@Norman E. Davey,Denis C. Shields,Richard J. Edwards
#t2009
#cBioinformatics
#index1220040
#% 
#!
  
#*Bayesian inference of protein-protein interactions from biological literature.
#@Rajesh Chowdhary,Jinfeng Zhang,Jun S. Liu
#t2009
#cBioinformatics
#index1220041
#% 
#!
  
#*Family classification without domain chaining.
#@Jacob M. Joseph,Dannie Durand
#t2009
#cBioinformatics
#index1220042
#% 
#!
  
#*Application and evaluation of automated semantic annotation of gene expression experiments.
#@Leon French,Suzanne Lane,Tamryn Law,Lydia Xu,Paul Pavlidis
#t2009
#cBioinformatics
#index1220043
#% 
#!
  
#*ViaComplex: software for landscape analysis of gene expression networks in genomic context.
#@Mauro A. A. Castro,José L. Rybarczyk Filho,Rodrigo J. S. Dalmolin,Marialva Sinigaglia,José C. F. Moreira,José C. M. Mombach,Rita M. C. de Almeida
#t2009
#cBioinformatics
#index1220044
#% 
#!
  
#*pySolo: a complete suite for sleep analysis in .
#@Giorgio F. Gilestro,Chiara Cirelli
#t2009
#cBioinformatics
#index1220045
#% 
#!
  
#*Predictions of RNA secondary structure by combining homologous sequence information.
#@Michiaki Hamada,Kengo Sato,Hisanori Kiryu,Toutai Mituyama,Kiyoshi Asai
#t2009
#cBioinformatics
#index1220046
#% 
#!
  
#*A web server for inferring the human -acetyltransferase-2 (NAT2) enzymatic phenotype from genotype.
#@Igor B. Kuznetsov,Michael McDuffie,Roxana Moslehi
#t2009
#cBioinformatics
#index1220047
#% 
#!
  
#*ModLink+: improving fold recognition by using protein-protein interactions.
#@Oriol Fornes,Ramon Aragues,Jordi Espadaler,Marc A. Martí-Renom,Andrej Sali,Baldo Oliva
#t2009
#cBioinformatics
#index1220048
#% 
#!
  
#*Shortest path analysis using partial correlations for classifying gene functions from gene expression data.
#@A. Marie Fitch,M. Beatrix Jones
#t2009
#cBioinformatics
#index1220049
#% 
#!
  
#*CNVVdb: a database of copy number variations across vertebrate genomes.
#@Feng-Chi Chen,Yen-Zho Chen,Trees-Juen Chuang
#t2009
#cBioinformatics
#index1220050
#% 
#!
  
#*Complexity reduction in context-dependent DNA substitution models.
#@William H. Majoros,Uwe Ohler
#t2009
#cBioinformatics
#index1220051
#% 
#!
  
#*NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results.
#@Jacques Lagnel,Costas S. Tsigenopoulos,Ioannis Iliopoulos
#t2009
#cBioinformatics
#index1220052
#% 
#!
  
#*Joint estimation of copy number variation and reference intensities on multiple DNA arrays using GADA.
#@Roger Pique-Regi,Antonio Ortega,Shahab Asgharzadeh
#t2009
#cBioinformatics
#index1220053
#% 
#!
  
#*A new modeling method in feature construction for the HSQC spectra screening problem.
#@Hiromi Arai,Satoru Watanabe,Takanori Kigawa,Masayuki Yamamura
#t2009
#cBioinformatics
#index1220054
#% 
#!
  
#*Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance.
#@Fuxiao Xin,Meng Li,Curtis Balch,Michael Thomson,Meiyun Fan,Yunlong Liu,Scott M. Hammond,Sun Kim,Kenneth P. Nephew
#t2009
#cBioinformatics
#index1220055
#% 
#!
  
#*How frugal is mother nature with haplotypes?
#@Sharlee Climer,Gerold Jäger,Alan R. Templeton,Weixiong Zhang
#t2009
#cBioinformatics
#index1220056
#% 
#!
  
#*Protein function annotation from sequence: prediction of residues interacting with RNA.
#@Ruth V. Spriggs,Yoichi Murakami,Haruki Nakamura,Susan Jones
#t2009
#cBioinformatics
#index1220057
#% 
#!
  
#*Editorial.
#@Dan Gusfield,Anna Tramontano
#t2009
#cBioinformatics
#index1220058
#% 
#!
  
#*MotifMap: a human genome-wide map of candidate regulatory motif sites.
#@Xiaohui Xie,Paul Rigor,Pierre Baldi
#t2009
#cBioinformatics
#index1220059
#% 
#!
  
#*A concanavalin A-like lectin domain in the CHS1/LYST protein, shared by members of the BEACH family.
#@Agathe Burgess,Jean Paul Mornon,Geneviève de Saint-Basile,Isabelle Callebaut
#t2009
#cBioinformatics
#index1220060
#% 
#!
  
#*BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server.
#@Paul Geeleher,Dermot Morris,John P. Hinde,Aaron Golden
#t2009
#cBioinformatics
#index1220061
#% 
#!
  
#*RAMI: a tool for identification and characterization of phylogenetic clusters in microbial communities.
#@Thomas Pommier,Björn Canbäck,Per Lundberg,Åke Hagström,Anders Tunlid
#t2009
#cBioinformatics
#index1220062
#% 
#!
  
#*Systematic analysis of synchronized oscillatory neuronal networks reveals an enrichment for coupled direct and indirect feedback motifs.
#@Chao-Yi Dong,Jisoon Lim,Yoonkey Nam,Kwang-Hyun Cho
#t2009
#cBioinformatics
#index1220063
#% 
#!
  
#*Improving 2D-DIGE protein expression analysis by two-stage linear mixed models: assessing experimental effects in a melanoma cell study.
#@Elmer Andrés Fernández,María R. Girotti,Juan A. López del Olmo,Andrea S. Llera,Osvaldo L. Podhajcer,Rodolfo J. C. Cantet,Mónica Balzarini
#t2008
#cBioinformatics
#index1220064
#% 
#!
  
#*An investigation into the population abundance distribution of mRNAs, proteins, and metabolites in biological systems.
#@Chuan Lu,Ross D. King
#t2009
#cBioinformatics
#index1266769
#% 
#!
  
#*Fast and accurate short read alignment with Burrows-Wheeler transform.
#@Heng Li,Richard Durbin
#t2009
#cBioinformatics
#index1266770
#% 
#!
  
#*Metal-MACiE: a database of metals involved in biological catalysis.
#@Claudia Andreini,Ivano Bertini,Gabriele Cavallaro,Gemma L. Holliday,Janet M. Thornton
#t2009
#cBioinformatics
#index1266771
#% 
#!
  
#*Path: a tool to facilitate pathway-based genetic association analysis.
#@David Zamar,Ben W. Tripp,George Ellis,Denise Daley
#t2009
#cBioinformatics
#index1266772
#% 
#!
  
#*PIQA: pipeline for Illumina G1 genome analyzer data quality assessment.
#@Antonio Martínez-Alcántara,E. Ballesteros,Chen Feng,M. Rojas,H. Koshinsky,Viacheslav Fofanov,P. Havlak,Yuriy Fofanov
#t2009
#cBioinformatics
#index1266773
#% 
#!
  
#*Copy number variation has little impact on bead-array-based measures of DNA methylation.
#@E. Andres Houseman,Brock C. Christensen,Margaret R. Karagas,Margaret R. Wrensch,Heather H. Nelson,Joseph Wiemels,Shichun Zheng,John Wiencke,Karl Kelsey,Carmen J. Marsit
#t2009
#cBioinformatics
#index1266774
#% 
#!
  
#*Enhancing MEDLINE document clustering by incorporating MeSH semantic similarity.
#@Shanfeng Zhu,Jia Zeng,Hiroshi Mamitsuka
#t2009
#cBioinformatics
#index1266775
#% 
#!
  
#*Response to comment on 'On the inference of spatial structure from population genetics data'.
#@Gilles Guillot
#t2009
#cBioinformatics
#index1266776
#% 
#!
  
#*A pattern-based nearest neighbor search approach for promoter prediction using DNA structural profiles.
#@Yanglan Gan,Jihong Guan,Shuigeng Zhou
#t2009
#cBioinformatics
#index1266777
#% 
#!
  
#*Literature-based priors for gene regulatory networks.
#@Emma Steele,Allan Tucker,Peter A. C. 't Hoen,Martijn J. Schuemie
#t2009
#cBioinformatics
#index1266778
#% 
#!
  
#*Relating periodicity of nucleosome organization and gene regulation.
#@Jun Wan,Jimmy J. Lin,Donald J. Zack,Jiang Qian
#t2009
#cBioinformatics
#index1266779
#% 
#!
  
#*Inferring progression models for CGH data.
#@Jun Liu,Nirmalya Bandyopadhyay,Sanjay Ranka,Michael Baudis,Tamer Kahveci
#t2009
#cBioinformatics
#index1266780
#% 
#!
  
#*Comments on sequence normalization of tiling array expression.
#@Don Gilbert,Andreas Rechtsteiner
#t2009
#cBioinformatics
#index1266781
#% 
#!
  
#*HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenome.
#@Jong Hyun Kim,Woo-Cheol Kim,Michael S. Waterman,Sanghyun Park,Lei M. Li
#t2009
#cBioinformatics
#index1266782
#% 
#!
  
#*Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy.
#@Xiaowen Liu,Yonghua Han,Denis Yuen,Bin Ma
#t2009
#cBioinformatics
#index1266783
#% 
#!
  
#*FRANz: reconstruction of wild multi-generation pedigrees.
#@Markus Riester,Peter F. Stadler,Konstantin Klemm
#t2009
#cBioinformatics
#index1266784
#% 
#!
  
#*U-Compare: share and compare text mining tools with UIMA.
#@Yoshinobu Kano,William A. Baumgartner Jr.,Luke McCrohon,Sophia Ananiadou,K. Bretonnel Cohen,Lawrence Hunter,Jun-ichi Tsujii
#t2009
#cBioinformatics
#index1266785
#% 
#!
  
#*Swift: primary data analysis for the Illumina Solexa sequencing platform.
#@Nava Whiteford,Tom Skelly,Christina Curtis,Matt E. Ritchie,Andrea Löhr,Alexander Wait Zaranek,Irina I. Abnizova,Clive Brown
#t2009
#cBioinformatics
#index1266786
#% 
#!
  
#*Reordering contigs of draft genomes using the Mauve Aligner.
#@Anna I. Rissman,Bob Mau,Bryan S. Biehl,Aaron E. Darling,Jeremy D. Glasner,Nicole T. Perna
#t2009
#cBioinformatics
#index1266787
#% 
#!
  
#*Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clustering.
#@Dikla Dotan-Cohen,Simon Kasif,Avraham A. Melkman
#t2009
#cBioinformatics
#index1266788
#% 
#!
  
#*Using dynamics-based comparisons to predict nucleic acid binding sites in proteins: an application to OB-fold domains.
#@Andrea Zen,Cesira de Chiara,Annalisa Pastore,Cristian Micheletti
#t2009
#cBioinformatics
#index1266789
#% 
#!
  
#*Family relationships: should consensus reign? - consensus clustering for protein families.
#@Macha Nikolski,David James Sherman
#t2009
#cBioinformatics
#index1266790
#% 
#!
  
#*Lightweight comparison of RNAs based on exact sequence-structure matches.
#@Steffen Heyne,Sebastian Will,Michael Beckstette,Rolf Backofen
#t2009
#cBioinformatics
#index1266791
#% 
#!
  
#*SOLpro: accurate sequence-based prediction of protein solubility.
#@Christophe N. Magnan,Arlo Z. Randall,Pierre Baldi
#t2009
#cBioinformatics
#index1266792
#% 
#!
  
#*libAnnotationSBML: a library for exploiting SBML annotations.
#@Neil Swainston,Pedro Mendes
#t2009
#cBioinformatics
#index1266793
#% 
#!
  
#*MaHCO: an ontology of the major histocompatibility complex for immunoinformatic applications and text mining.
#@David S. DeLuca,Elena Beisswanger,Joachim Wermter,Peter A. Horn,Udo Hahn,Rainer Blasczyk
#t2009
#cBioinformatics
#index1266794
#% 
#!
  
#*SHREC: a short-read error correction method.
#@Jan Schröder,Heiko Schröder,Simon J. Puglisi,Ranjan Sinha,Bertil Schmidt
#t2009
#cBioinformatics
#index1266795
#% 
#!
  
#*Structure discovery in PPI networks using pattern-based network decomposition.
#@Philip Bachman,Ying Liu
#t2009
#cBioinformatics
#index1266796
#% 
#!
  
#*Gradient lasso for Cox proportional hazards model.
#@Insuk Sohn,Jinseog Kim,Sin-Ho Jung,Changyi Park
#t2009
#cBioinformatics
#index1266797
#% 
#!
  
#*pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination.
#@Anna E. Lobley,Michael I. Sadowski,David T. Jones
#t2009
#cBioinformatics
#index1266798
#% 
#!
  
#*rtracklayer: an R package for interfacing with genome browsers.
#@Michael F. Lawrence,Robert Gentleman,Vincent J. Carey
#t2009
#cBioinformatics
#index1266799
#% 
#!
  
#*Figure mining for biomedical research.
#@Raul Rodriguez-Esteban,Ivan Iossifov
#t2009
#cBioinformatics
#index1266800
#% 
#!
  
#*Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data.
#@Hyungwon Choi,Alexey I. Nesvizhskii,Debashis Ghosh,Zhaohui S. Qin
#t2009
#cBioinformatics
#index1266801
#% 
#!
  
#*Apollo: a community resource for genome annotation editing.
#@Ed Lee,Nomi Harris,Mark Gibson,Raymond Chetty,Suzanna Lewis
#t2009
#cBioinformatics
#index1266802
#% 
#!
  
#*A genetic programming approach for diagnostic pattern discovery.
#@Zheng Rong Yang,Ganjana Lertmemongkolchai,Gladys Tan,Philip L. Felgner,Richard W. Titball
#t2009
#cBioinformatics
#index1266803
#% 
#!
  
#*PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy.
#@Woonghee Lee,William M. Westler,Arash Bahrami,Hamid Eghbalnia,John L. Markley
#t2009
#cBioinformatics
#index1266804
#% 
#!
  
#*Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison.
#@Aziz Mithani,Gail M. Preston,Jotun Hein
#t2009
#cBioinformatics
#index1266805
#% 
#!
  
#*Reliable prediction of protein thermostability change upon double mutation from amino acid sequence.
#@Liang-Tsung Huang,M. Michael Gromiha
#t2009
#cBioinformatics
#index1266806
#% 
#!
  
#*Statistical detection of cooperative transcription factors with similarity adjustment.
#@Utz J. Pape,Holger Klein,Martin Vingron
#t2009
#cBioinformatics
#index1266807
#% 
#!
  
#*The Sequence Alignment/Map format and SAMtools.
#@Heng Li,Bob Handsaker,Alec Wysoker,Tim Fennell,Jue Ruan,Nils Homer,Gabor Marth,Gonçalo R. Abecasis,Richard Durbin
#t2009
#cBioinformatics
#index1266808
#% 
#!
  
#*Robust synthetic biology design: stochastic game theory approach.
#@Bor-Sen Chen,Chia-Hung Chang,Hsiao-Ching Lee
#t2009
#cBioinformatics
#index1266809
#% 
#!
  
#*DIANA-mirPath: Integrating human and mouse microRNAs in pathways.
#@Giorgos L. Papadopoulos,Panagiotis Alexiou,Manolis Maragkakis,Martin Reczko,Artemis G. Hatzigeorgiou
#t2009
#cBioinformatics
#index1266810
#% 
#!
  
#*A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6.
#@Henrik Bengtsson,Pratyaksha Wirapati,Terence P. Speed
#t2009
#cBioinformatics
#index1266811
#% 
#!
  
#*Identifying the topology of protein complexes from affinity purification assays.
#@Caroline C. Friedel,Ralf Zimmer
#t2009
#cBioinformatics
#index1266812
#% 
#!
  
#*A survey of across-target bioactivity results of small molecules in PubChem.
#@Lianyi Han,Yanli Wang,Stephen H. Bryant
#t2009
#cBioinformatics
#index1266813
#% 
#!
  
#*Efficient stochastic simulation of reaction-diffusion processes via direct compilation.
#@Mieszko Lis,Maxim N. Artyomov,Srinivas Devadas,Arup K. Chakraborty
#t2009
#cBioinformatics
#index1266814
#% 
#!
  
#*Biophysical annotation and representation of CellML models.
#@S. M. Wimalaratne,Matt D. B. Halstead,Catherine M. Lloyd,Edmund J. Crampin,Poul M. F. Nielsen
#t2009
#cBioinformatics
#index1266815
#% 
#!
  
#*Integrative analysis of transcriptomic and proteomic data of : a non-linear model to predict abundance of undetected proteins.
#@Wandaliz Torres-García,Weiwen Zhang,George C. Runger,Roger H. Johnson,Deirdre R. Meldrum
#t2009
#cBioinformatics
#index1266816
#% 
#!
  
#*Hub genes with positive feedbacks function as master switches in developmental gene regulatory networks.
#@Chang H. Seo,Jeong-Rae Kim,Man-Sun Kim,Kwang-Hyun Cho
#t2009
#cBioinformatics
#index1266817
#% 
#!
  
#*Adaptive intervention in probabilistic boolean networks.
#@Ritwik Layek,Aniruddha Datta,Ranadip Pal,Edward R. Dougherty
#t2009
#cBioinformatics
#index1266818
#% 
#!
  
#*PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating.
#@Nicolas Lartillot,Thomas Lepage,Samuel Blanquart
#t2009
#cBioinformatics
#index1266819
#% 
#!
  
#*CORAL: aligning conserved core regions across domain families.
#@Jessica H. Fong,Aron Marchler-Bauer
#t2009
#cBioinformatics
#index1266820
#% 
#!
  
#*PESTAS: a web server for EST analysis and sequence mining.
#@Seong-Hyeuk Nam,Dae-Won Kim,Tae-Sung Jung,Young-Sang Choi,Dong-Wook Kim,Han-Suk Choi,Sang-Haeng Choi,Hong-Seog Park
#t2009
#cBioinformatics
#index1266821
#% 
#!
  
#*NTAP: for NimbleGen tiling array ChIP-chip data analysis.
#@Kun He,Xueyong Li,Junli Zhou,Xingwang Deng,Hongyu Zhao,Jingchu Luo
#t2009
#cBioinformatics
#index1266822
#% 
#!
  
#*VARNA: Interactive drawing and editing of the RNA secondary structure.
#@Kévin Darty,Alain Denise,Yann Ponty
#t2009
#cBioinformatics
#index1266823
#% 
#!
  
#*GeneRegionScan: a Bioconductor package for probe-level analysis of specific, small regions of the genome.
#@Lasse Folkersen,Diego Diez,Craig E. Wheelock,Jesper Z. Haeggström,Susumu Goto,Per Eriksson,Anders Gabrielsen
#t2009
#cBioinformatics
#index1266824
#% 
#!
  
#*Reconstructing signaling pathways from RNAi data using probabilistic Boolean threshold networks.
#@Lars Kaderali,Eva Dazert,Ulf Zeuge,Michael Frese,Ralf Bartenschlager
#t2009
#cBioinformatics
#index1266825
#% 
#!
  
#*Importing ArrayExpress datasets into R/Bioconductor.
#@Audrey Kauffmann,Tim F. Rayner,Helen E. Parkinson,Misha Kapushesky,Margus Lukk,Alvis Brazma,Wolfgang Huber
#t2009
#cBioinformatics
#index1266826
#% 
#!
  
#*A statistical framework for protein quantitation in bottom-up MS-based proteomics.
#@Yuliya V. Karpievitch,Jeff Stanley,Thomas Taverner,Jianhua Huang,Joshua N. Adkins,Charles Ansong,Fred Heffron,Thomas O. Metz,Wei-Jun Qian,Hyunjin Yoon,Richard D. Smith,Alan R. Dabney
#t2009
#cBioinformatics
#index1266827
#% 
#!
  
#*A fast hybrid short read fragment assembly algorithm.
#@Bertil Schmidt,Ranjan Sinha,Bryan Beresford-Smith,Simon J. Puglisi
#t2009
#cBioinformatics
#index1266828
#% 
#!
  
#*Visual and statistical comparison of metagenomes.
#@Suparna Mitra,Bernhard Klar,Daniel H. Huson
#t2009
#cBioinformatics
#index1266829
#% 
#!
  
#*Prestige centrality-based functional outlier detection in gene expression analysis.
#@Ali Torkamani,Nicholas J. Schork
#t2009
#cBioinformatics
#index1266830
#% 
#!
  
#*Executing multicellular differentiation: quantitative predictive modelling of vulval development.
#@Nicola Bonzanni,Elzbieta Krepska,K. Anton Feenstra,Wan Fokkink,Thilo Kielmann,Henri E. Bal,Jaap Heringa
#t2009
#cBioinformatics
#index1266831
#% 
#!
  
#*jClust: a clustering and visualization toolbox.
#@Georgios A. Pavlopoulos,Charalampos N. Moschopoulos,Sean D. Hooper,Reinhard Schneider,Sophia Kossida
#t2009
#cBioinformatics
#index1266832
#% 
#!
  
#*VarScan: variant detection in massively parallel sequencing of individual and pooled samples.
#@Daniel C. Koboldt,Ken Chen,Todd Wylie,David E. Larson,Michael D. McLellan,Elaine R. Mardis,George M. Weinstock,Richard K. Wilson,Li Ding
#t2009
#cBioinformatics
#index1266833
#% 
#!
  
#*Reconstruct modular phenotype-specific gene networks by knowledge-driven matrix factorization.
#@Xuerui Yang,Yang Zhou,Rong Jin,Christina Chan
#t2009
#cBioinformatics
#index1266834
#% 
#!
  
#*KIRMES: kernel-based identification of regulatory modules in euchromatic sequences.
#@Sebastian J. Schultheiß,Wolfgang Busch,Jan Lohmann,Oliver Kohlbacher,Gunnar Rätsch
#t2009
#cBioinformatics
#index1266835
#% 
#!
  
#*An active registry for bioinformatics web services.
#@Steve Pettifer,David Thorne,Philip McDermott,Terri K. Attwood,J. Baran,J. C. Bryne,Taavi Hupponen,D. Mowbray,G. Vriend
#t2009
#cBioinformatics
#index1266836
#% 
#!
  
#*Modeling multi-cellular behavior in epidermal tissue homeostasis via finite state machines in multi-agent systems.
#@Thomas Sütterlin,Simone Huber,Hartmut Dickhaus,Niels Grabe
#t2009
#cBioinformatics
#index1266837
#% 
#!
  
#*SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences.
#@M. Monzoorul Haque,Tarini Shankar Ghosh,Dinakar Komanduri,Sharmila S. Mande
#t2009
#cBioinformatics
#index1266838
#% 
#!
  
#*Error control variability in pathway-based microarray analysis.
#@David L. Gold,Jeffrey C. Miecznikowski,Song Liu
#t2009
#cBioinformatics
#index1266839
#% 
#!
  
#*Estimating the posterior probability that genome-wide association findings are true or false.
#@József Bukszár,Joseph L. McClay,Edwin J. C. G. van den Oord
#t2009
#cBioinformatics
#index1266840
#% 
#!
  
#*FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci.
#@Davide Rambaldi,Francesca Ciccarelli
#t2009
#cBioinformatics
#index1266841
#% 
#!
  
#*Efficient computation of all perfect repeats in genomic sequences of up to half a gigabyte, with a case study on the human genome.
#@Verónica Becher,Alejandro Deymonnaz,Pablo Ariel Heiber
#t2009
#cBioinformatics
#index1266842
#% 
#!
  
#*ESG: extended similarity group method for automated protein function prediction.
#@Meghana Chitale,Troy Hawkins,Changsoon Park,Daisuke Kihara
#t2009
#cBioinformatics
#index1266843
#% 
#!
  
#*A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa.
#@Véronique Dupierris,Christophe Masselon,Magali Court,Sylvie Kieffer-Jaquinod,Christophe Bruley
#t2009
#cBioinformatics
#index1266844
#% 
#!
  
#*MetaTISA: Metagenomic Translation Initiation Site Annotator for improving gene start prediction.
#@Gang-Qing Hu,Jiang-Tao Guo,Yong-Chu Liu,Huaiqiu Zhu
#t2009
#cBioinformatics
#index1266845
#% 
#!
  
#*apLCMS - adaptive processing of high-resolution LC/MS data.
#@Tianwei Yu,Youngja Park,Jennifer M. Johnson,Dean P. Jones
#t2009
#cBioinformatics
#index1266846
#% 
#!
  
#*ABACAS: algorithm-based automatic contiguation of assembled sequences.
#@Samuel Assefa,Thomas M. Keane,Thomas D. Otto,Chris Newbold,Matthew Berriman
#t2009
#cBioinformatics
#index1266847
#% 
#!
  
#*Ulla: a program for calculating environment-specific amino acid substitution tables.
#@Semin Lee,Tom L. Blundell
#t2009
#cBioinformatics
#index1266848
#% 
#!
  
#*PROMISE: a tool to identify genomic features with a specific biologically interesting pattern of associations with multiple endpoint variables.
#@Stan Pounds,Cheng Cheng,Xueyuan Cao,Kristine R. Crews,William Plunkett,Varsha Gandhi,Jeffrey Rubnitz,Raul C. Ribeiro,James R. Downing,Jatinder Lamba
#t2009
#cBioinformatics
#index1266849
#% 
#!
  
#*Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics.
#@Lee-Wei Yang,Eran Eyal,Ivet Bahar,Akio Kitao
#t2009
#cBioinformatics
#index1266850
#% 
#!
  
#*PROCAIN server for remote protein sequence similarity search.
#@Yong Wang,Ruslan Sadreyev,Nick V. Grishin
#t2009
#cBioinformatics
#index1266851
#% 
#!
  
#*MetNetAligner: a web service tool for metabolic network alignments.
#@Qiong Cheng,Robert W. Harrison,Alexander Zelikovsky
#t2009
#cBioinformatics
#index1266852
#% 
#!
  
#*Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data.
#@Michael Seifert,Jens Keilwagen,Marc Strickert,Ivo Grosse
#t2009
#cBioinformatics
#index1266853
#% 
#!
  
#*Treevolution: visual analysis of phylogenetic trees.
#@Rodrigo Santamaría,Roberto Therón
#t2009
#cBioinformatics
#index1266854
#% 
#!
  
#*Data structures and compression algorithms for genomic sequence data.
#@Marty C. Brandon,Douglas C. Wallace,Pierre Baldi
#t2009
#cBioinformatics
#index1266855
#% 
#!
  
#*: the solution space of sorting by reversals.
#@Marília D. V. Braga
#t2009
#cBioinformatics
#index1266856
#% 
#!
  
#*TANDEM: integrating automated allele binning into genetics and genomics workflows.
#@Michael Matschiner,Walter Salzburger
#t2009
#cBioinformatics
#index1266857
#% 
#!
  
#*CATMAID: collaborative annotation toolkit for massive amounts of image data.
#@Stephan Saalfeld,Albert Cardona,Volker Hartenstein,Pavel Tomancak
#t2009
#cBioinformatics
#index1266858
#% 
#!
  
#*Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood.
#@A. Raue,C. Kreutz,Thomas Maiwald,J. Bachmann,M. Schilling,U. Klingmüller,Jens Timmer
#t2009
#cBioinformatics
#index1266859
#% 
#!
  
#*Comment on 'On the inference of spatial structure from population genetics data'.
#@Eric Durand,Chibiao Chen,Olivier François
#t2009
#cBioinformatics
#index1266860
#% 
#!
  
#*A clustering approach for identification of enriched domains from histone modification ChIP-Seq data.
#@Chongzhi Zang,Dustin E. Schones,Chen Zeng,Kairong Cui,Keji Zhao,Weiqun Peng
#t2009
#cBioinformatics
#index1266861
#% 
#!
  
#*A CitationRank algorithm inheriting Google technology designed to highlight genes responsible for serious adverse drug reaction.
#@Lun Yang,Langlai Xu,Lin He
#t2009
#cBioinformatics
#index1266862
#% 
#!
  
#*InterMap3D: predicting and visualizing co-evolving protein residues.
#@Rodrigo Gouveia-Oliveira,Francisco S. Roque,Rasmus Wernersson,Thomas Sicheritz-Ponten,Peter Wad Sackett,Anne Mølgaard,Anders Gorm Pedersen
#t2009
#cBioinformatics
#index1266863
#% 
#!
  
#*Evolutionary construction of multiple graph alignments for the structural analysis of biomolecules.
#@Thomas Fober,Marco Mernberger,Gerhard Klebe,Eyke Hüllermeier
#t2009
#cBioinformatics
#index1266864
#% 
#!
  
#*Using chemical organization theory for model checking.
#@Christoph Kaleta,Stephan Richter,Peter Dittrich
#t2009
#cBioinformatics
#index1266865
#% 
#!
  
#*ChromA: signal-based retention time alignment for chromatography-mass spectrometry data.
#@Nils Hoffmann,Jens Stoye
#t2009
#cBioinformatics
#index1266866
#% 
#!
  
#*Complex discovery from weighted PPI networks.
#@Guimei Liu,Limsoon Wong,Hon Nian Chua
#t2009
#cBioinformatics
#index1266867
#% 
#!
  
#*IMG ER: a system for microbial genome annotation expert review and curation.
#@Victor M. Markowitz,Konstantinos Mavrommatis,Natalia Ivanova,I-Min A. Chen,Ken Chu,Nikos Kyrpides
#t2009
#cBioinformatics
#index1266868
#% 
#!
  
#*Comments on the analysis of unbalanced microarray data.
#@Kathleen F. Kerr
#t2009
#cBioinformatics
#index1266869
#% 
#!
  
#*CycSim - an online tool for exploring and experimenting with genome-scale metabolic models.
#@François Le Fèvre,Serge Smidtas,C. Combe,M. Durot,Florence d'Alché-Buc,Vincent Schächter
#t2009
#cBioinformatics
#index1266870
#% 
#!
  
#*SOAP2: an improved ultrafast tool for short read alignment.
#@Ruiqiang Li,Chang Yu,Yingrui Li,Tak Wah Lam,Siu-Ming Yiu,Karsten Kristiansen,Jun Wang
#t2009
#cBioinformatics
#index1266871
#% 
#!
  
#*Predictor correlation impacts machine learning algorithms: implications for genomic studies.
#@Kristin K. Nicodemus,James D. Malley
#t2009
#cBioinformatics
#index1266872
#% 
#!
  
#*Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA.
#@Kathryn E. Holt,Yik Y. Teo,Heng Li,Satheesh Nair,Gordon Dougan,John Wain,Julian Parkhill
#t2009
#cBioinformatics
#index1266873
#% 
#!
  
#*On the inference of spatial structure from population genetics data.
#@Gilles Guillot
#t2009
#cBioinformatics
#index1266874
#% 
#!
  
#*Highly accelerated feature detection in proteomics data sets using modern graphics processing units.
#@Rene Hussong,Barbara Gregorius,Andreas Tholey,Andreas Hildebrandt
#t2009
#cBioinformatics
#index1266875
#% 
#!
  
#*GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events.
#@Te-Chin Chu,Tsunglin Liu,D. T. Lee,Greg C. Lee,Arthur Chun-Chieh Shih
#t2009
#cBioinformatics
#index1266876
#% 
#!
  
#*A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry.
#@Reid F. Thompson,Masako Suzuki,Kevin W. Lau,John M. Greally
#t2009
#cBioinformatics
#index1266877
#% 
#!
  
#*trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.
#@Salvador Capella-Gutiérrez,José M. Silla-Martínez,Toni Gabaldón
#t2009
#cBioinformatics
#index1266878
#% 
#!
  
#*Generating linkage mapping files from Affymetrix SNP chip data.
#@M. Bahlo,C. J. Bromhead
#t2009
#cBioinformatics
#index1266879
#% 
#!
  
#*UTGB toolkit for personalized genome browsers.
#@Taro L. Saito,Jun Yoshimura,Shin Sasaki,Budrul Ahsan,Atsushi Sasaki,Reginaldo Kuroshu,Shinichi Morishita
#t2009
#cBioinformatics
#index1266880
#% 
#!
  
#*Rapid detection, classification and accurate alignment of up to a million or more related protein sequences.
#@Andrew F. Neuwald
#t2009
#cBioinformatics
#index1266881
#% 
#!
  
#*DYNAMIK: a software environment for cell DYNAmics, Motility, and Information tracKing, with an application to Ras pathways.
#@Stefan Jäger,Qingfeng Song,Su-Shing Chen
#t2009
#cBioinformatics
#index1266882
#% 
#!
  
#*Cross-scale, cross-pathway evaluation using an agent-based non-small cell lung cancer model.
#@Zhihui Wang,Christina M. Birch,Jonathan Sagotsky,Thomas S. Deisboeck
#t2009
#cBioinformatics
#index1266883
#% 
#!
  
#*RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regions.
#@Oscar M. Rueda,Ramón Díaz-Uriarte
#t2009
#cBioinformatics
#index1266884
#% 
#!
  
#*TreeTime: an extensible C++ software package for Bayesian phylogeny reconstruction with time-calibration.
#@Lin Himmelmann,Dirk Metzler
#t2009
#cBioinformatics
#index1266885
#% 
#!
  
#*Using a mutual information-based site transition network to map the genetic evolution of influenza A/H3N2 virus.
#@Zhen Xia,Gulei Jin,Jun Zhu,Ruhong Zhou
#t2009
#cBioinformatics
#index1266886
#% 
#!
  
#*ViTraM: visualization of transcriptional modules.
#@Hong Sun,Karen Lemmens,Tim Van den Bulcke,Kristof Engelen,Bart De Moor,Kathleen Marchal
#t2009
#cBioinformatics
#index1266887
#% 
#!
  
#*WebArrayDB: cross-platform microarray data analysis and public data repository.
#@Xiaoqin Xia,Michael McClelland,Steffen Porwollik,Wenzhi Song,Xianling Cong,Yipeng Wang
#t2009
#cBioinformatics
#index1266888
#% 
#!
  
#*Comparative study on ChIP-seq data: normalization and binding pattern characterization.
#@Cenny Taslim,Jiejun Wu,Pearlly Yan,Greg Singer,Jeffrey D. Parvin,Tim Hui-Ming Huang,Shili Lin,Kun Huang
#t2009
#cBioinformatics
#index1266889
#% 
#!
  
#*Evidence for human microRNA-offset RNAs in small RNA sequencing data.
#@David Langenberger,Clara Bermudez-Santana,Jana Hertel,Steve Hoffmann,Philipp Khaitovich,Peter F. Stadler
#t2009
#cBioinformatics
#index1266890
#% 
#!
  
#*ADAN: a database for prediction of protein-protein interaction of modular domains mediated by linear motifs.
#@J. A. Encinar,G. Fernandez-Ballester,I. E. Sánchez,E. Hurtado-Gomez,Francois Stricher,P. Beltrao,Luis Serrano
#t2009
#cBioinformatics
#index1266891
#% 
#!
  
#*Motif discovery and motif finding from genome-mapped DNase footprint data.
#@Ivan V. Kulakovskiy,Alexander V. Favorov,Vsevolod Makeev
#t2009
#cBioinformatics
#index1266892
#% 
#!
  
#*Supervised prediction of drug-target interactions using bipartite local models.
#@Kevin Bleakley,Yoshihiro Yamanishi
#t2009
#cBioinformatics
#index1266893
#% 
#!
  
#*Affy exon tissues: exon levels in normal tissues in human, mouse and rat.
#@Andrew A. Pohl,Charles W. Sugnet,Tyson Clark,Kayla E. Smith,Pauline A. Fujita,Melissa S. Cline
#t2009
#cBioinformatics
#index1266894
#% 
#!
  
#*SNP-o-matic.
#@Heinrich Magnus Manske,Dominic Kwiatkowski
#t2009
#cBioinformatics
#index1266895
#% 
#!
  
#*The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction.
#@Curtis Huttenhower,Matthew A. Hibbs,Chad L. Myers,Amy A. Caudy,David C. Hess,Olga G. Troyanskaya
#t2009
#cBioinformatics
#index1266896
#% 
#!
  
#*HI: haplotype improver using paired-end short reads.
#@Quan Long,Daniel MacArthur,Zemin Ning,Chris Tyler-Smith
#t2009
#cBioinformatics
#index1266897
#% 
#!
  
#*Prediction of protein beta-residue contacts by Markov logic networks with grounding-specific weights.
#@Marco Lippi,Paolo Frasconi
#t2009
#cBioinformatics
#index1266898
#% 
#!
  
#*Transcriptional landscape estimation from tiling array data using a model of signal shift and drift.
#@Pierre Nicolas,Aurélie Leduc,Stéphane Robin,Simon Rasmussen,Hanne Jarmer,Philippe Bessières
#t2009
#cBioinformatics
#index1266899
#% 
#!
  
#*-link EST clustering: evaluating error introduced by chimeric sequences under different degrees of linkage.
#@Lauren M. Bragg,Glenn Stone
#t2009
#cBioinformatics
#index1266900
#% 
#!
  
#*Identification of distant family relationships.
#@Øivind Skare,Nuala Sheehan,Thore Egeland
#t2009
#cBioinformatics
#index1266901
#% 
#!
  
#*Determining noisy attractors of delayed stochastic gene regulatory networks from multiple data sources.
#@Xiaofeng Dai,Olli Yli-Harja,Andre S. Ribeiro
#t2009
#cBioinformatics
#index1266902
#% 
#!
  
#*TTA Lynx: a web-based service for analysis of actinomycete genes containing rare TTA codon.
#@Nestor Zaburannyy,Bohdan Ostash,Victor Fedorenko
#t2009
#cBioinformatics
#index1266903
#% 
#!
  
#*High-throughput minor histocompatibility antigen prediction.
#@David S. DeLuca,Britta Eiz-Vesper,Nektarios Ladas,Barbara Anna-Maria Khattab,Rainer Blasczyk
#t2009
#cBioinformatics
#index1266904
#% 
#!
  
#*Genome-wide maps of mono- and di-nucleosomes of .
#@Hiromi Nishida,Takayuki Motoyama,Shogo Yamamoto,Hiroyuki Aburatani,Hiroyuki Osada
#t2009
#cBioinformatics
#index1266905
#% 
#!
  
#*Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets.
#@Galina V. Glazko,Frank Emmert-Streib
#t2009
#cBioinformatics
#index1266906
#% 
#!
  
#*Robustness considerations in selecting efficient two-color microarray designs.
#@A. H. M. Mahbub Latif,Frank Bretz,Edgar Brunner
#t2009
#cBioinformatics
#index1266907
#% 
#!
  
#*TileProbe: modeling tiling array probe effects using publicly available data.
#@Jennifer Toolan Judy,Hongkai Ji
#t2009
#cBioinformatics
#index1266908
#% 
#!
  
#*Antimony: a modular model definition language.
#@Lucian P. Smith,Frank T. Bergmann,Deepak Chandran,Herbert M. Sauro
#t2009
#cBioinformatics
#index1266909
#% 
#!
  
#*ITM Probe: analyzing information flow in protein networks.
#@Aleksandar Stojmirovic,Yi-Kuo Yu
#t2009
#cBioinformatics
#index1266910
#% 
#!
  
#*PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds.
#@Yangho Chen,Tade Souaiaia,Ting Chen
#t2009
#cBioinformatics
#index1266911
#% 
#!
  
#*CEAS: -regulatory element annotation system.
#@Hyunjin Shin,Tao Liu,Arjun K. Manrai,X. Shirley Liu
#t2009
#cBioinformatics
#index1266912
#% 
#!
  
#*DiProGB: the dinucleotide properties genome browser.
#@Maik Friedel,Swetlana Nikolajewa,Jürgen Sühnel,Thomas Wilhelm
#t2009
#cBioinformatics
#index1266913
#% 
#!
  
#*Upcoming challenges for multiple sequence alignment methods in the high-throughput era.
#@Carsten Kemena,Cédric Notredame
#t2009
#cBioinformatics
#index1266914
#% 
#!
  
#*Methyl side-chain dynamics prediction based on protein structure.
#@Pablo Carbonell,Antonio del Sol
#t2009
#cBioinformatics
#index1266915
#% 
#!
  
#*Reconstructing spatiotemporal gene expression data from partial observations.
#@Dustin A. Cartwright,Siobhan M. Brady,David A. Orlando,Bernd Sturmfels,Philip N. Benfey
#t2009
#cBioinformatics
#index1266916
#% 
#!
  
#*Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development.
#@Nicola Bonzanni,Elzbieta Krepska,K. Anton Feenstra,Wan Fokkink,Thilo Kielmann,Henri E. Bal,Jaap Heringa
#t2009
#cBioinformatics
#index1266917
#% 
#!
  
#*Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks.
#@Mei Liu,Xue-wen Chen,Raja Jothi
#t2009
#cBioinformatics
#index1266918
#% 
#!
  
#*Network analyses in systems pharmacology.
#@Seth I. Berger,Ravi Iyengar
#t2009
#cBioinformatics
#index1266919
#% 
#!
  
#*Efficient SCOP-fold classification and retrieval using index-based protein substructure alignments.
#@Pin-Hao Chi,Bin Pang,Dmitry Korkin,Chi-Ren Shyu
#t2009
#cBioinformatics
#index1266920
#% 
#!
  
#*FRODOCK: a new approach for fast rotational protein-protein docking.
#@José Ignacio Garzón,José Ramón Lopéz-Blanco,Carles Pons,Julio A. Kovacs,Ruben Abagyan,Juan Fernández-Recio,Pablo Chacón
#t2009
#cBioinformatics
#index1266921
#% 
#!
  
#*A multi-dimensional evidence-based candidate gene prioritization approach for complex diseases-schizophrenia as a case.
#@Jingchun Sun,Peilin Jia,Ayman H. Fanous,Bradley T. Webb,Edwin J. C. G. van den Oord,Xiangning Chen,József Bukszár,Kenneth S. Kendler,Zhongming Zhao
#t2009
#cBioinformatics
#index1266922
#% 
#!
  
#*Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0.
#@Yves Dehouck,Aline Grosfils,Benjamin Folch,Dimitri Gilis,Philippe Bogaerts,Marianne Rooman
#t2009
#cBioinformatics
#index1266923
#% 
#!
  
#*PhyloDet: a scalable visualization tool for mapping multiple traits to large evolutionary trees.
#@Bongshin Lee,Lev Nachmanson,George G. Robertson,Jonathan M. Carlson,David Heckerman
#t2009
#cBioinformatics
#index1266924
#% 
#!
  
#*Double error shrinkage method for identifying protein binding sites observed by tiling arrays with limited replication.
#@Youngchul Kim,Stefan Bekiranov,Jae K. Lee,Taesung Park
#t2009
#cBioinformatics
#index1266925
#% 
#!
  
#*Improving phylogenetic analyses by incorporating additional information from genetic sequence databases.
#@Li-Jung Liang,Robert E. Weiss,Benjamin D. Redelings,Marc A. Suchard
#t2009
#cBioinformatics
#index1266926
#% 
#!
  
#*Benchmarking homology detection procedures with low complexity filters.
#@Kristoffer Forslund,Erik L. L. Sonnhammer
#t2009
#cBioinformatics
#index1266927
#% 
#!
  
#*Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition.
#@Yuliya V. Karpievitch,Thomas Taverner,Joshua N. Adkins,Stephen J. Callister,Gordon A. Anderson,Richard D. Smith,Alan R. Dabney
#t2009
#cBioinformatics
#index1266928
#% 
#!
  
#*Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks.
#@Mathieu Clément-Ziza,Christophe Malabat,Christian Weber,Ivan Moszer,Tero Aittokallio,Catherine Letondal,Sandrine Rousseau
#t2009
#cBioinformatics
#index1266929
#% 
#!
  
#*: meta-analysis of hierarchically dependent gene expression studies.
#@John R. Stevens,Gabriel Nicholas
#t2009
#cBioinformatics
#index1266930
#% 
#!
  
#*Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite.
#@Takehiro Hashimoto,Michiel J. L. de Hoon,Sean M. Grimmond,Carsten O. Daub,Yoshihide Hayashizaki,Geoffrey J. Faulkner
#t2009
#cBioinformatics
#index1266931
#% 
#!
  
#*RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data.
#@Nicole Cloonan,Qinying Xu,Geoffrey J. Faulkner,Darrin F. Taylor,Dave T. P. Tang,Gabriel Kolle,Sean M. Grimmond
#t2009
#cBioinformatics
#index1266932
#% 
#!
  
#*aGEM: an integrative system for analyzing spatial-temporal gene-expression information.
#@Natalia Jiménez-Lozano,Joan Segura,José Ramón Macías,Juanjo Vega,José María Carazo
#t2009
#cBioinformatics
#index1266933
#% 
#!
  
#*A phylogenetic and Markov model approach for the reconstruction of mutational pathways of drug resistance.
#@Patricia Buendia,Brice Cadwallader,Victor DeGruttola
#t2009
#cBioinformatics
#index1266934
#% 
#!
  
#*Relationship between gene co-expression and sharing of transcription factor binding sites in .
#@Antonio Marco,Charlotte Konikoff,Timothy L. Karr,Sudhir Kumar
#t2009
#cBioinformatics
#index1266935
#% 
#!
  
#*Testing the hypothesis of tissue selectivity: the intersection-union test and a Bayesian approach.
#@Katrijn Van Deun,H. Hoijtink,L. Thorrez,L. Van Lommel,F. Schuit,Iven Van Mechelen
#t2009
#cBioinformatics
#index1266936
#% 
#!
  
#*An algorithm for learning maximum entropy probability models of disease risk that efficiently searches and sparingly encodes multilocus genomic interactions.
#@David J. Miller,Yanxin Zhang,Guoqiang Yu,Yongmei Liu,Li Chen,Carl D. Langefeld,David Herrington,Yue Wang
#t2009
#cBioinformatics
#index1266937
#% 
#!
  
#*R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.
#@Matthew E. Ritchie,Benilton Carvalho,Kurt N. Hetrick,Simon Tavaré,Rafael A. Irizarry
#t2009
#cBioinformatics
#index1266938
#% 
#!
  
#*PineSAP - sequence alignment and SNP identification pipeline.
#@Jill L. Wegrzyn,Jennifer M. Lee,John Liechty,David B. Neale
#t2009
#cBioinformatics
#index1266939
#% 
#!
  
#*ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data.
#@Martin Morgan,Simon Anders,Michael F. Lawrence,Patrick Aboyoun,Hervé Pagès,Robert Gentleman
#t2009
#cBioinformatics
#index1266940
#% 
#!
  
#*A new method for revealing correlated mutations under the structural and functional constraints in proteins.
#@Byung-chul Lee,Dongsup Kim
#t2009
#cBioinformatics
#index1266941
#% 
#!
  
#*An optimization model for metabolic pathways.
#@Francisco J. Planes,John E. Beasley
#t2009
#cBioinformatics
#index1266942
#% 
#!
  
#*Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl.
#@Olivier Sand,Morgane Thomas-Chollier,Jacques van Helden
#t2009
#cBioinformatics
#index1266943
#% 
#!
  
#*SnoopCGH: software for visualizing comparative genomic hybridization data.
#@Jacob Almagro-Garcia,Magnus Magnus Manske,Celine Carret,Susana G. Campino,Sarah Auburn,Bronwyn L. MacInnis,Gareth Maslen,Arnab Pain,Christopher I. Newbold,Dominic Kwiatkowski,Taane G. Clark
#t2009
#cBioinformatics
#index1266944
#% 
#!
  
#*GRIMP: a web- and grid-based tool for high-speed analysis of large-scale genome-wide association using imputed data.
#@Karol Estrada,Anis Abuseiris,Frank Grosveld,André G. Uitterlinden,Tobias A. Knoch,Fernando Rivadeneira
#t2009
#cBioinformatics
#index1266945
#% 
#!
  
#*PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains.
#@T. Aleksiev,R. Potestio,F. Pontiggia,S. Cozzini,C. Micheletti
#t2009
#cBioinformatics
#index1266946
#% 
#!
  
#*Comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'.
#@Aurélie Névéol,James G. Mork,Alan R. Aronson
#t2009
#cBioinformatics
#index1266947
#% 
#!
  
#*Response to comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'.
#@Dolf Trieschnigg,Piotr Pezik,Vivian Lee,Franciska de Jong,Wessel Kraaij,Dietrich Rebholz-Schuhmann
#t2009
#cBioinformatics
#index1266948
#% 
#!
  
#*Methods for labeling error detection in microarrays based on the effect of data perturbation on the regression model.
#@Chen Zhang,Chunguo Wu,Enrico Blanzieri,You Zhou,Yan Wang,Wei Du,Yanchun Liang
#t2009
#cBioinformatics
#index1266949
#% 
#!
  
#*Gene ranking and biomarker discovery under correlation.
#@Verena Zuber,Korbinian Strimmer
#t2009
#cBioinformatics
#index1266950
#% 
#!
  
#*YADA: a tool for taking the most out of high-resolution spectra.
#@Paulo C. Carvalho,Tao Xu,Xuemei Han,Daniel Cociorva,Valmir C. Barbosa,John R. Yates III
#t2009
#cBioinformatics
#index1266951
#% 
#!
  
#*PopABC: a program to infer historical demographic parameters.
#@Joao S. Lopes,David J. Balding,Mark A. Beaumont
#t2009
#cBioinformatics
#index1266952
#% 
#!
  
#*T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm.
#@Julien Jorda,Andrey V. Kajava
#t2009
#cBioinformatics
#index1266953
#% 
#!
  
#*Moderated effect size and -value combinations for microarray meta-analyses.
#@Guillemette Marot,Jean-Louis Foulley,Claus-Dieter Mayer,Florence Jaffrézic
#t2009
#cBioinformatics
#index1266954
#% 
#!
  
#*FBA-SimVis: interactive visualization of constraint-based metabolic models.
#@Eva Grafahrend-Belau,Christian Klukas,Björn H. Junker,Falk Schreiber
#t2009
#cBioinformatics
#index1266955
#% 
#!
  
#*FRED - a framework for T-cell epitope detection.
#@Magdalena Feldhahn,Pierre Dönnes,Philipp Thiel,Oliver Kohlbacher
#t2009
#cBioinformatics
#index1266956
#% 
#!
  
#*ANCHOR: web server for predicting protein binding regions in disordered proteins.
#@Zsuzsanna Dosztányi,Bálint Mészáros,István Simon
#t2009
#cBioinformatics
#index1266957
#% 
#!
  
#*Caleydo: connecting pathways and gene expression.
#@Marc Streit,Alexander Lex,Michael Kalkusch,Kurt Zatloukal,Dieter Schmalstieg
#t2009
#cBioinformatics
#index1266958
#% 
#!
  
#*CoCoa: a software tool for estimating the coefficient of coancestry from multilocus genotype data.
#@Steven Maenhout,Bernard De Baets,Geert Haesaert
#t2009
#cBioinformatics
#index1266959
#% 
#!
  
#*Expertomica metabolite profiling: getting more information from LC-MS using the stochastic systems approach.
#@Jan Urban,Jan Vanek,Jirí Soukup,Dalibor Stys
#t2009
#cBioinformatics
#index1266960
#% 
#!
  
#*Partition function and base pairing probabilities for RNA-RNA interaction prediction.
#@Fenix W. D. Huang,Jing Qin,Christian M. Reidys,Peter F. Stadler
#t2009
#cBioinformatics
#index1266961
#% 
#!
  
#*Enhancement of beta-sheet assembly by cooperative hydrogen bonds potential.
#@Ami Levy-Moonshine,El-ad David Amir,Chen Keasar
#t2009
#cBioinformatics
#index1266962
#% 
#!
  
#*A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation.
#@Qiwen Dong,Shuigeng Zhou,Jihong Guan
#t2009
#cBioinformatics
#index1266963
#% 
#!
  
#*info-gibbs: a motif discovery algorithm that directly optimizes information content during sampling.
#@Matthieu Defrance,Jacques van Helden
#t2009
#cBioinformatics
#index1266964
#% 
#!
  
#*A System for Information Management in BioMedical Studies - SIMBioMS.
#@Maria Krestyaninova,Andris Zarins,Juris Viksna,Natalja Kurbatova,Peteris Rucevskis,Sudeshna Guha Neogi,Mike Gostev,Teemu Perheentupa,Juha Knuuttila,Amy Barrett,Ilkka Lappalainen,Johan Rung,Karlis Podnieks,Ugis Sarkans,Mark I. McCarthy,Alvis Brazma
#t2009
#cBioinformatics
#index1266965
#% 
#!
  
#*Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis.
#@Kengo Kinoshita,Takeshi Obayashi
#t2009
#cBioinformatics
#index1266966
#% 
#!
  
#*Corrigendum for Elliott, B. , 'PathCase pathways database system', Bioinformatics 2008, 24(21) 2526-2533.
#@Brendan Elliott,Mustafa Kirac,Ali Cakmak,Gokhan Yavas,Stephen Mayes,En Cheng,Yuan Wang,Chirag Gupta,Gultekin Özsoyoglu,Z. Meral Özsoyoglu
#t2009
#cBioinformatics
#index1266967
#% 
#!
  
#*A modified LOESS normalization applied to microRNA arrays: a comparative evaluation.
#@Davide Risso,Maria Sofia Massa,Monica Chiogna,Chiara Romualdi
#t2009
#cBioinformatics
#index1266968
#% 
#!
  
#*The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets.
#@John W. Nicol,Gregg A. Helt,Steven G. Blanchard Jr.,Archana Raja,Ann E. Loraine
#t2009
#cBioinformatics
#index1266969
#% 
#!
  
#*MISTRAL: a tool for energy-based multiple structural alignment of proteins.
#@Cristian Micheletti,Henri Orland
#t2009
#cBioinformatics
#index1266970
#% 
#!
  
#*Statistical lower bounds on protein copy number from fluorescence expression images.
#@Lee Zamparo,Theodore J. Perkins
#t2009
#cBioinformatics
#index1266971
#% 
#!
  
#*TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples.
#@Sanghamitra Bandyopadhyay,Ramkrishna Mitra
#t2009
#cBioinformatics
#index1266972
#% 
#!
  
#*ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes.
#@Erik Kristiansson,Philip Hugenholtz,Daniel Dalevi
#t2009
#cBioinformatics
#index1266973
#% 
#!
  
#*: a cross-platform software environment for polymer chemistry modelling and simulation/analysis of mass spectrometric data.
#@Filippo Rusconi
#t2009
#cBioinformatics
#index1266974
#% 
#!
  
#*The SNP ratio test: pathway analysis of genome-wide association datasets.
#@Colm O'Dushlaine,Elaine Kenny,Elizabeth A. Heron,Ricardo Segurado,Michael Gill,Derek W. Morris,Aiden Corvin
#t2009
#cBioinformatics
#index1266975
#% 
#!
  
#*Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification.
#@Hojung Nam,Bong Chul Chung,Younghoon Kim,Ki Young Lee,Doheon Lee
#t2009
#cBioinformatics
#index1333079
#% 
#!
  
#*Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results and Discussion.
#@Shashank Agarwal,Hong Yu
#t2009
#cBioinformatics
#index1333084
#% 
#!
  
#*integrOmics: an R package to unravel relationships between two omics datasets.
#@Kim-Anh Lê Cao,Ignacio González,Sébastien Déjean
#t2009
#cBioinformatics
#index1333138
#% 
#!
  
#*Client-side integration of life science literature resources.
#@Richard Easty,Nikolay Nikolov
#t2009
#cBioinformatics
#index1333135
#% 
#!
  
#*Inferring relative proportions of DNA variants from sequencing electropherograms.
#@I. M. Carr,J. I. Robinson,R. Dimitriou,A. F. Markham,A. W. Morgan,D. T. Bonthron
#t2009
#cBioinformatics
#index1333124
#% 
#!
  
#*VDNA: The virtual DNA plug-in for VMD.
#@Thomas C. Bishop
#t2009
#cBioinformatics
#index1333083
#% 
#!
  
#*Efficiently finding genome-wide three-way gene interactions from transcript- and genotype-data.
#@Mitsunori Kayano,Ichigaku Takigawa,Motoki Shiga,Koji Tsuda,Hiroshi Mamitsuka
#t2009
#cBioinformatics
#index1333099
#% 
#!
  
#*CellClassifier: supervised learning of cellular phenotypes.
#@Pauli Rämö,Raphael Sacher,Berend Snijder,Boris Begemann,Lucas Pelkmans
#t2009
#cBioinformatics
#index1333114
#% 
#!
  
#*CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information.
#@Lisa Bartoli,Piero Fariselli,Anders Krogh,Rita Casadio
#t2009
#cBioinformatics
#index1333070
#% 
#!
  
#*INTERSNP: genome-wide interaction analysis guided by a priori information.
#@Christine Herold,Michael Steffens,Felix F. Brockschmidt,Max P. Baur,Tim Becker
#t2009
#cBioinformatics
#index1333063
#% 
#!
  
#*Analyzing biological network parameters with CentiScaPe.
#@Giovanni Scardoni,Michele Petterlini,Carlo Laudanna
#t2009
#cBioinformatics
#index1333157
#% 
#!
  
#*A boosting approach to structure learning of graphs with and without prior knowledge.
#@Shahzia Anjum,Arnaud Doucet,Christopher C. Holmes
#t2009
#cBioinformatics
#index1333094
#% 
#!
  
#*Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly.
#@Bas E. Dutilh,Martijn A. Huynen,Marc Strous
#t2009
#cBioinformatics
#index1333121
#% 
#!
  
#*Metabolite and reaction inference based on enzyme specificities.
#@Marco J. L. de Groot,Rogier J. P. van Berlo,Wouter A. van Winden,P. J. T. Verheijen,Marcel J. T. Reinders,Dick de Ridder
#t2009
#cBioinformatics
#index1333169
#% 
#!
  
#*Genome analysis with inter-nucleotide distances.
#@Vera Afreixo,Carlos A. C. Bastos,Armando J. Pinho,Sara P. Garcia,Paulo Jorge S. G. Ferreira
#t2009
#cBioinformatics
#index1333080
#% 
#!
  
#*3D-SURFER: software for high-throughput protein surface comparison and analysis.
#@David La,Juan Esquivel-Rodríguez,Vishwesh Venkatraman,Bin Li,Lee Sael,Stephen Ueng,Steven Ahrendt,Daisuke Kihara
#t2009
#cBioinformatics
#index1333150
#% 
#!
  
#*Understanding hydrogen-bond patterns in proteins using network motifs.
#@Ofer Rahat,Uri Alon,Yaakov Levy,Gideon Schreiber
#t2009
#cBioinformatics
#index1333073
#% 
#!
  
#*W-ChIPMotifs: a web application tool for motif discovery from ChIP-based high-throughput data.
#@Victor X. Jin,Jeff Apostolos,Naga Satya Venkateswara Ra Nagisetty,Peggy J. Farnham
#t2009
#cBioinformatics
#index1333091
#% 
#!
  
#*A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG).
#@Michael Brudno,Paul Medvedev,Jens Stoye,Francisco M. de la Vega
#t2009
#cBioinformatics
#index1333164
#% 
#!
  
#*In response to 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'.
#@Karoline Faust,Didier Croes,Jacques van Helden
#t2009
#cBioinformatics
#index1333155
#% 
#!
  
#*Computing the shortest elementary flux modes in genome-scale metabolic networks.
#@Luis F. de Figueiredo,Adam Podhorski,Angel Rubio,Christoph Kaleta,John E. Beasley,Stefan Schuster,Francisco J. Planes
#t2009
#cBioinformatics
#index1333122
#% 
#!
  
#*Modified variational Bayes EM estimation of hidden Markov tree model of cell lineages.
#@Victor Olariu,Daniel Coca,Stephen A. Billings,Peter Tonge,Paul Gokhale,Peter W. Andrews,Visakan Kadirkamanathan
#t2009
#cBioinformatics
#index1333137
#% 
#!
  
#*NAViGaTOR: Network Analysis, Visualization and Graphing Toronto.
#@Kevin R. Brown,David Otasek,Muhammad Ali,Michael J. McGuffin,Wing Xie,Baiju Devani,Ian Lawson van Toch,Igor Jurisica
#t2009
#cBioinformatics
#index1333113
#% 
#!
  
#*LIBRUS: combined machine learning and homology information for sequence-based ligand-binding residue prediction.
#@Christopher Kauffman,George Karypis
#t2009
#cBioinformatics
#index1333132
#% 
#!
  
#*Saint: a lightweight integration environment for model annotation.
#@Allyson L. Lister,Matthew R. Pocock,Morgan Taschuk,Anil Wipat
#t2009
#cBioinformatics
#index1333068
#% 
#!
  
#*Quantitative measurement of aging using image texture entropy.
#@Lior Shamir,Catherine A. Wolkow,Ilya G. Goldberg
#t2009
#cBioinformatics
#index1333158
#% 
#!
  
#*The interwinding nature of protein-protein interfaces and its implication for protein complex formation.
#@Kei Yura,Steven Hayward
#t2009
#cBioinformatics
#index1333085
#% 
#!
  
#*A method for visualizing CellML models.
#@S. M. Wimalaratne,Matt D. B. Halstead,Catherine M. Lloyd,M. T. Cooling,Edmund J. Crampin,Poul M. F. Nielsen
#t2009
#cBioinformatics
#index1333112
#% 
#!
  
#*Significant speedup of database searches with HMMs by search space reduction with PSSM family models.
#@Michael Beckstette,Robert Homann,Robert Giegerich,Stefan Kurtz
#t2009
#cBioinformatics
#index1333103
#% 
#!
  
#*Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'.
#@Luis F. de Figueiredo,Stefan Schuster,Christoph Kaleta,David A. Fell
#t2009
#cBioinformatics
#index1333149
#% 
#!
  
#*Learning gene regulatory networks from gene expression measurements using non-parametric molecular kinetics.
#@Tarmo Äijö,Harri Lähdesmäki
#t2009
#cBioinformatics
#index1333129
#% 
#!
  
#*Phenotypic categorization of genetic skin diseases reveals new relations between phenotypes, genes and pathways.
#@Ruslan Sadreyev,Jamison D. Feramisco,Hensin Tsao,Nick V. Grishin
#t2009
#cBioinformatics
#index1333140
#% 
#!
  
#*Pathway identification by network pruning in the metabolic network of .
#@Philip Gerlee,L. Lizana,K. Sneppen
#t2009
#cBioinformatics
#index1333116
#% 
#!
  
#*Mobyle: a new full web bioinformatics framework.
#@Bertrand Néron,Hervé Ménager,Corinne Maufrais,Nicolas Joly,Julien Maupetit,Sébastien Letort,Sébastien Carrère,Pierre Tufféry,Catherine Letondal
#t2009
#cBioinformatics
#index1333086
#% 
#!
  
#*Algorithms for optimal protein structure alignment.
#@Aleksandar Poleksic
#t2009
#cBioinformatics
#index1333074
#% 
#!
  
#*PathBuilder - open source software for annotating and developing pathway resources.
#@Kumaran Kandasamy,Shivakumar Keerthikumar,Rajesh Raju,T. S. Keshava Prasad,Y. L. Ramachandra,S. Sujatha Mohan,Akhilesh Pandey
#t2009
#cBioinformatics
#index1333093
#% 
#!
  
#*Characterization of H NMR spectroscopic data and the generation of synthetic validation sets.
#@Paul E. Anderson,Michael L. Raymer,Benjamin J. Kelly,Nicholas V. Reo,Nicholas J. DelRaso,Travis E. Doom
#t2009
#cBioinformatics
#index1333147
#% 
#!
  
#*Bi-correlation clustering algorithm for determining a set of co-regulated genes.
#@Anindya Bhattacharya,Rajat K. De
#t2009
#cBioinformatics
#index1333067
#% 
#!
  
#*WEbcoli: an interactive and asynchronous web application for design and analysis of genome-scale model.
#@Tae-Sung Jung,Hock Chuan Yeo,Satty G. Reddy,Wan-Sup Cho,Dong-Yup Lee
#t2009
#cBioinformatics
#index1333127
#% 
#!
  
#*UniMaP: finding unique mass and peptide signatures in the human proteome.
#@Anastasia Alexandridou,George T. Tsangaris,Konstantinos N. Vougas,Konstantina S. Nikita,George M. Spyrou
#t2009
#cBioinformatics
#index1333092
#% 
#!
  
#*Statistical methods for gene set co-expression analysis.
#@YounJeong Choi,Christina Kendziorski
#t2009
#cBioinformatics
#index1333134
#% 
#!
  
#*Comparative analysis and unification of domain-domain interaction networks.
#@Patrik Björkholm,Erik L. L. Sonnhammer
#t2009
#cBioinformatics
#index1333163
#% 
#!
  
#*A hypergraph-based learning algorithm for classifying gene expression and arrayCGH data with prior knowledge.
#@Ze Tian,TaeHyun Hwang,Rui Kuang
#t2009
#cBioinformatics
#index1333161
#% 
#!
  
#*CMap 1.01: a comparative mapping application for the Internet.
#@Ken Youens-Clark,Benjamin Faga,Immanuel Yap,Lincoln Stein,Doreen Ware
#t2009
#cBioinformatics
#index1333109
#% 
#!
  
#*Multiple testing in genome-wide association studies via hidden Markov models.
#@Zhi Wei,Wenguang Sun,Kai Wang,Hakon Hakonarson
#t2009
#cBioinformatics
#index1333148
#% 
#!
  
#*QuickGO: a web-based tool for Gene Ontology searching.
#@David Binns,Emily Dimmer,Rachael P. Huntley,Daniel Barrell,Claire O'Donovan,Rolf Apweiler
#t2009
#cBioinformatics
#index1333098
#% 
#!
  
#*transcriptome assembly with ABySS.
#@Inanç Birol,Shaun D. Jackman,Cydney B. Nielsen,Jenny Q. Qian,Richard Varhol,Greg Stazyk,Ryan D. Morin,Yongjun Zhao,Martin Hirst,Jacqueline E. Schein,Douglas E. Horsman,Joseph M. Connors,Randy D. Gascoyne,Marco A. Marra,Steven J. M. Jones
#t2009
#cBioinformatics
#index1333153
#% 
#!
  
#*Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.
#@Kai Ye,Marcel H. Schulz,Quan Long,Rolf Apweiler,Zemin Ning
#t2009
#cBioinformatics
#index1333152
#% 
#!
  
#*Efficient estimation of pairwise distances between genomes.
#@Mirjana Domazet-Loso,Bernhard Haubold
#t2009
#cBioinformatics
#index1333145
#% 
#!
  
#*Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data.
#@Jacob F. Degner,John C. Marioni,Athma A. Pai,Joseph K. Pickrell,Everlyne Nkadori,Yoav Gilad,Jonathan K. Pritchard
#t2009
#cBioinformatics
#index1333096
#% 
#!
  
#*Knowledge-based instantiation of full atomic detail into coarse-grain RNA 3D structural models.
#@Magdalena A. Jonikas,Randall J. Radmer,Russ B. Altman
#t2009
#cBioinformatics
#index1333139
#% 
#!
  
#*ERNEST: a toolbox for chemical reaction network theory.
#@Nicola Soranzo,Claudio Altafini
#t2009
#cBioinformatics
#index1333087
#% 
#!
  
#*Identification of genes involved in the same pathways using a Hidden Markov Model-based approach.
#@Alexander Senf,Xue-wen Chen
#t2009
#cBioinformatics
#index1333142
#% 
#!
  
#*A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis.
#@Andreas Keller,Christina Backes,Andreas Gerasch,Michael Kaufmann,Oliver Kohlbacher,Eckart Meese,Hans-Peter Lenhof
#t2009
#cBioinformatics
#index1333075
#% 
#!
  
#*Identifying related journals through log analysis.
#@Zhiyong Lu,Natalie Xie,W. John Wilbur
#t2009
#cBioinformatics
#index1333101
#% 
#!
  
#*Reproducing the manual annotation of multiple sequence alignments using a SVM classifier.
#@Christian Blouin,Scott Perry,Allan Lavell,Edward Susko,Andrew J. Roger
#t2009
#cBioinformatics
#index1333151
#% 
#!
  
#*Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach.
#@Hisashi Kashima,Yoshihiro Yamanishi,Tsuyoshi Kato,Masashi Sugiyama,Koji Tsuda
#t2009
#cBioinformatics
#index1333065
#% 
#!
  
#*Improving peptide identification with single-stage mass spectrum peaks.
#@Zengyou He,Weichuan Yu
#t2009
#cBioinformatics
#index1333062
#% 
#!
  
#*Automated inference of molecular mechanisms of disease from amino acid substitutions.
#@Biao Li,Vidhya G. Krishnan,Matthew E. Mort,Fuxiao Xin,Kishore K. Kamati,David N. Cooper,Sean D. Mooney,Predrag Radivojac
#t2009
#cBioinformatics
#index1333066
#% 
#!
  
#*ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing.
#@Gerald Quon,Quaid Morris
#t2009
#cBioinformatics
#index1333165
#% 
#!
  
#*Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance.
#@Peter J. Park,Sek Won Kong,Toma Tebaldi,Weil R. Lai,Simon Kasif,Isaac S. Kohane
#t2009
#cBioinformatics
#index1333106
#% 
#!
  
#*Identifiability of isoform deconvolution from junction arrays and RNA-Seq.
#@David Hiller,Hui Jiang,Weihong Xu,Wing Hung Wong
#t2009
#cBioinformatics
#index1333128
#% 
#!
  
#*Adaptive multi-agent architecture for functional sequence motifs recognition.
#@Jia Zeng,Reda Alhajj,Douglas J. Demetrick
#t2009
#cBioinformatics
#index1333089
#% 
#!
  
#*Correlating multiple SNPs and multiple disease phenotypes: penalized non-linear canonical correlation analysis.
#@Sandra Waaijenborg,Aeilko H. Zwinderman
#t2009
#cBioinformatics
#index1333131
#% 
#!
  
#*Flynet: a genomic resource for transcriptional regulatory networks.
#@Feng Tian,Parantu K. Shah,Xiangjun Liu,Nicolas Negre,Jia Chen,Oleksiy Karpenko,Kevin P. White,Robert L. Grossman
#t2009
#cBioinformatics
#index1333166
#% 
#!
  
#*: a program for generating serial samples under an infinite sites model.
#@Mattias Jakobsson
#t2009
#cBioinformatics
#index1333088
#% 
#!
  
#*MOODS: fast search for position weight matrix matches in DNA sequences.
#@Janne Korhonen,Petri Martinmäki,Cinzia Pizzi,Pasi Rastas,Esko Ukkonen
#t2009
#cBioinformatics
#index1333118
#% 
#!
  
#*Accessible methods for the dynamic time-scale decomposition of biochemical systems.
#@Irina Surovtsova,Natalia Simus,Thomas Lorenz,Artjom König,Sven Sahle,Ursula Kummer
#t2009
#cBioinformatics
#index1333090
#% 
#!
  
#*Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis.
#@Ronglai Shen,Adam B. Olshen,Marc Ladanyi
#t2009
#cBioinformatics
#index1333156
#% 
#!
  
#*G-compass: a web-based comparative genome browser between human and other vertebrate genomes.
#@Yoshihiro Kawahara,Ryuichi Sakate,Akihiro Matsuya,Katsuhiko Murakami,Yoshiharu Sato,Hao Zhang,Takashi Gojobori,Takeshi Itoh,Tadashi Imanishi
#t2009
#cBioinformatics
#index1333076
#% 
#!
  
#*Quantifying cancer progression with conjunctive Bayesian networks.
#@Moritz Gerstung,Michael Baudis,Holger Moch,Niko Beerenwinkel
#t2009
#cBioinformatics
#index1333146
#% 
#!
  
#*The effects of probe binding affinity differences on gene expression measurements and how to deal with them.
#@Michael Dannemann,Anna Lorenc,Ines Hellmann,Philipp Khaitovich,Michael Lachmann
#t2009
#cBioinformatics
#index1333141
#% 
#!
  
#*Next generation software for functional trend analysis.
#@Gabriel F. Berriz,John E. Beaver,Can Cenik,Murat Tasan,Frederick P. Roth
#t2009
#cBioinformatics
#index1333111
#% 
#!
  
#*ABWGAT: anchor-based whole genome analysis tool.
#@Sarbashis Das,Anchal Vishnoi,Alok Bhattacharya
#t2009
#cBioinformatics
#index1333159
#% 
#!
  
#*Qupe - a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
#@Stefan P. Albaum,Heiko Neuweger,Benjamin Fränzel,Sita Lange,Dominik Mertens,Christian Trötschel,Dirk Wolters,Jörn Kalinowski,Tim W. Nattkemper,Alexander Goesmann
#t2009
#cBioinformatics
#index1333136
#% 
#!
  
#*Rapid detection, classification and accurate alignment of up to a million or more related protein sequences.
#@Andrew F. Neuwald
#t2009
#cBioinformatics
#index1333104
#% 
#!
  
#*How and when should interactome-derived clusters be used to predict functional modules and protein function?
#@Jimin Song,Mona Singh
#t2009
#cBioinformatics
#index1333125
#% 
#!
  
#*SimCT: a generic tool to visualize ontology-based relationships for biological objects.
#@Carl Herrmann,Sèverine Bérard,Laurent Tichit
#t2009
#cBioinformatics
#index1333105
#% 
#!
  
#*Mining gene functional networks to improve mass-spectrometry-based protein identification.
#@Smriti R. Ramakrishnan,Christine Vogel,Taejoon Kwon,Luiz O. Penalva,Edward M. Marcotte,Daniel P. Miranker
#t2009
#cBioinformatics
#index1333077
#% 
#!
  
#*CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
#@Michiaki Hamada,Kengo Sato,Hisanori Kiryu,Toutai Mituyama,Kiyoshi Asai
#t2009
#cBioinformatics
#index1333100
#% 
#!
  
#*EASYMIFS and SITEHOUND: a toolkit for the identification of ligand-binding sites in protein structures.
#@Dario Ghersi,Roberto Sanchez
#t2009
#cBioinformatics
#index1333082
#% 
#!
  
#*: high-throughput analysis and visualization of quantitative real-time PCR data in R.
#@Heidi Dvinge,Paul Bertone
#t2009
#cBioinformatics
#index1333144
#% 
#!
  
#*ncRNAppi - a tool for identifying disease-related miRNA and siRNA targeting pathways.
#@Ka-Lok Ng,Hsueh-Chuan Liu,Shan-Chih Lee
#t2009
#cBioinformatics
#index1333126
#% 
#!
  
#*Updates to the RMAP short-read mapping software.
#@Andrew D. Smith,Wen-Yu Chung,Emily Hodges,Jude Kendall,Greg Hannon,James Hicks,Zhenyu Xuan,Michael Q. Zhang
#t2009
#cBioinformatics
#index1333123
#% 
#!
  
#*Integrated analysis of copy number alterations and gene expression: a bivariate assessment of equally directed abnormalities.
#@Martin Schäfer,Holger Schwender,Sylvia Merk,Claudia Haferlach,Katja Ickstadt,Martin Dugas
#t2009
#cBioinformatics
#index1333072
#% 
#!
  
#*PoreLogo: a new tool to analyse, visualize and compare channels in transmembrane proteins.
#@Romina Oliva,Janet M. Thornton,Marialuisa Pellegrini-Calace
#t2009
#cBioinformatics
#index1333095
#% 
#!
  
#*Predicting homologous signaling pathways using machine learning.
#@Babak Bostan,Russell Greiner,Duane Szafron,Paul Lu
#t2009
#cBioinformatics
#index1333154
#% 
#!
  
#*digeR: a graphical user interface R package for analyzing 2D-DIGE data.
#@Yue Fan,T. Brendan Murphy,R. William G. Watson
#t2009
#cBioinformatics
#index1333167
#% 
#!
  
#*Detection of new protein domains using co-occurrence: application to .
#@Nicolas Terrapon,Olivier Gascuel,Eric Maréchal,Laurent Bréhélin
#t2009
#cBioinformatics
#index1333117
#% 
#!
  
#*HHsvm: fast and accurate classification of profile-profile matches identified by HHsearch.
#@Mensur Dlakic
#t2009
#cBioinformatics
#index1333108
#% 
#!
  
#*Automatic assignment of reaction operators to enzymatic reactions.
#@Markus Leber,Volker Egelhofer,Ida Schomburg,Dietmar Schomburg
#t2009
#cBioinformatics
#index1333120
#% 
#!
  
#*Functionally guided alignment of protein interaction networks for module detection.
#@Waqar Ali,Charlotte M. Deane
#t2009
#cBioinformatics
#index1333102
#% 
#!
  
#*TagDust - a program to eliminate artifacts from next generation sequencing data.
#@Timo Lassmann,Yoshihide Hayashizaki,Carsten O. Daub
#t2009
#cBioinformatics
#index1333064
#% 
#!
  
#*Processing and population genetic analysis of multigenic datasets with ProSeq3 software.
#@Dmitry A. Filatov
#t2009
#cBioinformatics
#index1333097
#% 
#!
  
#*Bayesian detection of non-sinusoidal periodic patterns in circadian expression data.
#@Darya Chudova,Alexander T. Ihler,Kevin K. Lin,Bogi Andersen,Padhraic Smyth
#t2009
#cBioinformatics
#index1333081
#% 
#!
  
#*Lost in translation: an assessment and perspective for computational microRNA target identification.
#@Panagiotis Alexiou,Manolis Maragkakis,Giorgos L. Papadopoulos,Martin Reczko,Artemis G. Hatzigeorgiou
#t2009
#cBioinformatics
#index1333168
#% 
#!
  
#*A novel method for mining highly imbalanced high-throughput screening data in PubChem.
#@Qingliang Li,Yanli Wang,Stephen H. Bryant
#t2009
#cBioinformatics
#index1333119
#% 
#!
  
#*Predicting citation count of papers within four years of publication.
#@Alfonso Ibáñez,Pedro Larrañaga,Concha Bielza
#t2009
#cBioinformatics
#index1333115
#% 
#!
  
#*computational prediction of non-coding RNA genes in prokaryotic genomes.
#@Thao T. Tran,Fengfeng Zhou,Sarah Marshburn,Mark Stead,Sidney R. Kushner,Ying Xu
#t2009
#cBioinformatics
#index1333071
#% 
#!
  
#*A Bayesian approach to the alignment of mass spectra.
#@Xiaoxiao Kong,Cavan Reilly
#t2009
#cBioinformatics
#index1333143
#% 
#!
  
#*Estimating population haplotype frequencies from pooled SNP data using incomplete database information.
#@Matti Pirinen
#t2009
#cBioinformatics
#index1333130
#% 
#!
  
#*Model aggregation: a building-block approach to creating large macromolecular regulatory networks.
#@Ranjit Randhawa,Clifford A. Shaffer,John J. Tyson
#t2009
#cBioinformatics
#index1333162
#% 
#!
  
#*Exon Array Analyzer: a web interface for Affymetrix exon array analysis.
#@Pascal Gellert,Shizuka Uchida,Thomas Braun
#t2009
#cBioinformatics
#index1333160
#% 
#!
  
#*PubMed-EX: a web browser extension to enhance PubMed search with text mining features.
#@Richard Tzong-Han Tsai,Hong-Jie Dai,Po-Ting Lai,Chi-Hsin Huang
#t2009
#cBioinformatics
#index1333078
#% 
#!
  
#*iBioSim: a tool for the analysis and design of genetic circuits.
#@Chris J. Myers,Nathan A. Barker,Kevin Jones,Hiroyuki Kuwahara,Curtis Madsen,Nam-Phuong D. Nguyen
#t2009
#cBioinformatics
#index1333069
#% 
#!
  
#*CRISPI: a CRISPR interactive database.
#@Christine Rousseau,Mathieu Gonnet,Marc Le Romancer,Jacques Nicolas
#t2009
#cBioinformatics
#index1333133
#% 
#!
  
#*Detailing regulatory networks through large scale data integration.
#@Curtis Huttenhower,K. Tsheko Mutungu,Natasha Indik,Woongcheol Yang,Mark Schroeder,Joshua J. Forman,Olga G. Troyanskaya,Hilary A. Coller
#t2009
#cBioinformatics
#index1333107
#% 
#!
  
#*A dictionary to identify small molecules and drugs in free text.
#@Kristina M. Hettne,Rob H. Stierum,Martijn J. Schuemie,Peter J. M. Hendriksen,Bob J. A. Schijvenaars,Erik M. van Mulligen,Jos Kleinjans,Jan A. Kors
#t2009
#cBioinformatics
#index1333110
#% 
#!
  
#*Cascleave: towards more accurate prediction of caspase substrate cleavage sites.
#@Jiangning Song,Hao Tan,Hongbin Shen,Khalid Mahmood,Sarah E. Boyd,Geoffrey I. Webb,Tatsuya Akutsu,James C. Whisstock
#t2010
#cBioinformatics
#index2849511
#% 
#!
  
#*DEGseq: an R package for identifying differentially expressed genes from RNA-seq data.
#@Likun Wang,Zhixing Feng,Xi Wang,Xiaowo Wang,Xuegong Zhang
#t2010
#cBioinformatics
#index2849499
#% 
#!
  
#*ARH: predicting splice variants from genome-wide data with modified entropy.
#@Axel Rasche,Ralf Herwig
#t2010
#cBioinformatics
#index2849423
#% 
#!
  
#*Protein complex prediction based on simultaneous protein interaction network.
#@Suk Hoon Jung,Bo-ra Hyun,Woo-Hyuk Jang,Hee-Young Hur,Dong-Soo Han
#t2010
#cBioinformatics
#index2849545
#% 
#!
  
#*NGSView: an extensible open source editor for next-generation sequencing data.
#@Erik Arner,Yoshihide Hayashizaki,Carsten O. Daub
#t2010
#cBioinformatics
#index2849530
#% 
#!
  
#*Six Rossmannoid folds, including the Class I aminoacyl-tRNA synthetases, share a partial core with the anti-codon-binding domain of a Class II aminoacyl-tRNA synthetase.
#@Stephen Cammer,Charles W. Carter Jr.
#t2010
#cBioinformatics
#index2849624
#% 
#!
  
#*Copy number variant detection in inbred strains from short read sequence data.
#@Jared T. Simpson,Rebecca E. McIntyre,David J. Adams,Richard Durbin
#t2010
#cBioinformatics
#index2849473
#% 
#!
  
#*Ancestors 1.0: a web server for ancestral sequence reconstruction.
#@Abdoulaye Baniré Diallo,Vladimir Makarenkov,Mathieu Blanchette
#t2010
#cBioinformatics
#index2849525
#% 
#!
  
#*Easy retrieval of single amino-acid polymorphisms and phenotype information using SwissVar.
#@Anaïs Mottaz,Fabrice P. A. David,Anne-Lise Veuthey,Yum Lina Yip
#t2010
#cBioinformatics
#index2849617
#% 
#!
  
#*Methods for combining peptide intensities to estimate relative protein abundance.
#@Brian Carrillo,Corey Yanofsky,Sylvie Laboissiere,Robert Nadon,Robert E. Kearney
#t2010
#cBioinformatics
#index2849482
#% 
#!
  
#*DistanceScan: a tool for promoter modeling.
#@Vladimir Shelest,Daniela Albrecht,Ekaterina Shelest
#t2010
#cBioinformatics
#index2849638
#% 
#!
  
#*WellReader: a MATLAB program for the analysis of fluorescence and luminescence reporter gene data.
#@Frédéric Boyer,Bruno Besson,Guillaume Baptist,Jérôme Izard,Corinne Pinel,Delphine Ropers,Johannes Geiselmann,Hidde de Jong
#t2010
#cBioinformatics
#index2849657
#% 
#!
  
#*pegas: an R package for population genetics with an integrated-modular approach.
#@Emmanuel Paradis
#t2010
#cBioinformatics
#index2849436
#% 
#!
  
#*inGAP: an integrated next-generation genome analysis pipeline.
#@Ji Qi,Fangqing Zhao,Anne Buboltz,Stephan C. Schuster
#t2010
#cBioinformatics
#index2849418
#% 
#!
  
#*CandiSNPer: a web tool for the identification of candidate SNPs for causal variants.
#@Armin O. Schmitt,Jens Aßmus,Ralf H. Bortfeldt,Gudrun A. Brockmann
#t2010
#cBioinformatics
#index2849479
#% 
#!
  
#*SDOP-DB: a comparative standardized-protocol database for mouse phenotypic analyses.
#@Nobuhiko Tanaka,Kazunori Waki,Hideki Kaneda,Tomohiro Suzuki,Ikuko Yamada,Tamio Furuse,Kimio Kobayashi,Hiromi Motegi,Hideaki Toki,Maki Inoue,Osamu Minowa,Tetsuo Noda,Keizo Takao,Tsuyoshi Miyakawa,Aki Takahashi,Tsuyoshi Koide,Shigeharu Wakana,Hiroshi Masuya
#t2010
#cBioinformatics
#index2849573
#% 
#!
  
#*Inferring cluster-based networks from differently stimulated multiple time-course gene expression data.
#@Yuichi Shiraishi,Shuhei Kimura,Mariko Okada
#t2010
#cBioinformatics
#index2849446
#% 
#!
  
#*CYSTM, a novel cysteine-rich transmembrane module with a role in stress tolerance across eukaryotes.
#@Thiago M. Venancio,L. Aravind
#t2010
#cBioinformatics
#index2849554
#% 
#!
  
#*NEMO: a tool for analyzing gene and chromosome territory distributions from 3D-FISH experiments.
#@E. Iannuccelli,F. Mompart,Joël Gellin,Yvette Lahbib-Mansais,Martine Yerle,Thomas Boudier
#t2010
#cBioinformatics
#index2849426
#% 
#!
  
#*XDIA: improving on the label-free data-independent analysis.
#@Paulo C. Carvalho,Xuemei Han,Tao Xu,Daniel Cociorva,Maria da Gloria Carvalho,Valmir C. Barbosa,John R. Yates III
#t2010
#cBioinformatics
#index2849408
#% 
#!
  
#*SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors.
#@Rodrigo Goya,Mark G. F. Sun,Ryan D. Morin,Gillian Leung,Gavin Ha,Kimberley C. Wiegand,Janine Senz,Anamaria Crisan,Marco A. Marra,Martin Hirst,David Huntsman,Kevin P. Murphy,Sam Aparicio,Sohrab P. Shah
#t2010
#cBioinformatics
#index2849583
#% 
#!
  
#*MADS+: discovery of differential splicing events from Affymetrix exon junction array data.
#@Shihao Shen,Claude C. Warzecha,Russ P. Carstens,Yi Xing
#t2010
#cBioinformatics
#index2849578
#% 
#!
  
#*A computational analysis of the antigenic properties of haemagglutinin in influenza A H3N2.
#@William D. Lees,David S. Moss,Adrian J. Shepherd
#t2010
#cBioinformatics
#index2849649
#% 
#!
  
#*Annotation and merging of SBML models with semanticSBML.
#@Falko Krause,Jannis Uhlendorf,Timo Lubitz,Marvin Schulz,Edda Klipp,Wolfram Liebermeister
#t2010
#cBioinformatics
#index2849614
#% 
#!
  
#*DensiTree: making sense of sets of phylogenetic trees.
#@Remco R. Bouckaert
#t2010
#cBioinformatics
#index2849631
#% 
#!
  
#*Disambiguating the species of biomedical named entities using natural language parsers.
#@Xinglong Wang,Jun-ichi Tsujii,Sophia Ananiadou
#t2010
#cBioinformatics
#index2849536
#% 
#!
  
#*HIGEDA: a hierarchical gene-set genetics based algorithm for finding subtle motifs in biological sequences.
#@Thanh Le,Tom Altman,Katheleen J. Gardiner
#t2010
#cBioinformatics
#index2849527
#% 
#!
  
#*Xper: introducing -taxonomy.
#@Visotheary Ung,Guillaume Dubus,René Zaragüeta-Bagils,Régine Vignes-Lebbe
#t2010
#cBioinformatics
#index2849437
#% 
#!
  
#*Quality assessment of protein model-structures using evolutionary conservation.
#@Matan Kalman,Nir Ben-Tal
#t2010
#cBioinformatics
#index2849640
#% 
#!
  
#*Target prediction and a statistical sampling algorithm for RNA-RNA interaction.
#@Fenix W. D. Huang,Jing Qin,Christian M. Reidys,Peter F. Stadler
#t2010
#cBioinformatics
#index2849568
#% 
#!
  
#*Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis.
#@Ronglai Shen,Adam B. Olshen,Marc Ladanyi
#t2010
#cBioinformatics
#index2849464
#% 
#!
  
#*PanCGHweb: a web tool for genotype calling in pangenome CGH data.
#@Jumamurat R. Bayjanov,Roland J. Siezen,Sacha A. F. T. van Hijum
#t2010
#cBioinformatics
#index2849645
#% 
#!
  
#*Roll: a new algorithm for the detection of protein pockets and cavities with a rolling probe sphere.
#@Jian Yu,Yong Zhou,Isao Tanaka,Min Yao
#t2010
#cBioinformatics
#index2849522
#% 
#!
  
#*Visualizing SNP statistics in the context of linkage disequilibrium using LD-Plus.
#@William S. Bush,Scott M. Dudek,Marylyn D. Ritchie
#t2010
#cBioinformatics
#index2849553
#% 
#!
  
#*Over-optimism in bioinformatics research.
#@Anne-Laure Boulesteix
#t2010
#cBioinformatics
#index2849502
#% 
#!
  
#*Statistical expression deconvolution from mixed tissue samples.
#@Jennifer Clarke,Pearl Seo,Bertrand Clarke
#t2010
#cBioinformatics
#index2849604
#% 
#!
  
#*dbTEU: a protein database of trace element utilization.
#@Yan Zhang,Vadim N. Gladyshev
#t2010
#cBioinformatics
#index2849512
#% 
#!
  
#*Inferring combined CNV/SNP haplotypes from genotype data.
#@Shu-Yi Su,Julian E. Asher,Marjo-Riita Jarvelin,Phillipe Froguel,Alexandra I. F. Blakemore,David J. Balding,Lachlan J. M. Coin
#t2010
#cBioinformatics
#index2849630
#% 
#!
  
#*Mixtures of regression models for time course gene expression data: evaluation of initialization and random effects.
#@Theresa Scharl,Bettina Grün,Friedrich Leisch
#t2010
#cBioinformatics
#index2849546
#% 
#!
  
#*GWAS Analyzer: integrating genotype, phenotype and public annotation data for genome-wide association study analysis.
#@Christine Fong,Dennis C. Ko,Michael Wasnick,Matthew Radey,Samuel I. Miller,Mitchell J. Brittnacher
#t2010
#cBioinformatics
#index2849481
#% 
#!
  
#*SPICi: a fast clustering algorithm for large biological networks.
#@Peng Jiang,Mona Singh
#t2010
#cBioinformatics
#index2849456
#% 
#!
  
#*FineStr: a web server for single-base-resolution nucleosome positioning.
#@Idan Gabdank,Danny Barash,Edward N. Trifonov
#t2010
#cBioinformatics
#index2849517
#% 
#!
  
#*Composition bias and the origin of ORFan genes.
#@Inbal Yomtovian,Nuttinee Teerakulkittipong,Byungkook Lee,John Moult,Ron Unger
#t2010
#cBioinformatics
#index2849591
#% 
#!
  
#*MIRAGAA - a methodology for finding coordinated effects of microRNA expression changes and genome aberrations in cancer.
#@Raj K. Gaire,James Bailey,Jennifer Bearfoot,Ian G. Campbell,Peter J. Stuckey,Izhak Haviv
#t2010
#cBioinformatics
#index2849445
#% 
#!
  
#*Identification of substrates for Ser/Thr kinases using residue-based statistical pair potentials.
#@Narendra Kumar,Debasisa Mohanty
#t2010
#cBioinformatics
#index2849407
#% 
#!
  
#*Fast and accurate long-read alignment with Burrows-Wheeler transform.
#@Heng Li,Richard Durbin
#t2010
#cBioinformatics
#index2849400
#% 
#!
  
#*A new gene selection procedure based on the covariance distance.
#@Rui Hu,Xing Qiu,Galina V. Glazko
#t2010
#cBioinformatics
#index2849455
#% 
#!
  
#*Snoopy - a unifying Petri net framework to investigate biomolecular networks.
#@Christian Rohr,Wolfgang Marwan,Monika Heiner
#t2010
#cBioinformatics
#index2849425
#% 
#!
  
#*Power to detect selective allelic amplification in genome-wide scans of tumor data.
#@Ninad Dewal,Matthew L. Freedman,Thomas LaFramboise,Itsik Pe'er
#t2010
#cBioinformatics
#index2849576
#% 
#!
  
#*Small RNAs in angiosperms: sequence characteristics, distribution and generation.
#@Dijun Chen,Yijun Meng,Xiaoxia Ma,Chuanzao Mao,Youhuang Bai,Junjie Cao,Haibin Gu,Ping Wu,Ming Chen
#t2010
#cBioinformatics
#index2849650
#% 
#!
  
#*Microindel detection in short-read sequence data.
#@Peter Krawitz,Christian Rödelsperger,Marten Jäger,Luke Jostins,Sebastian Bauer,Peter N. Robinson
#t2010
#cBioinformatics
#index2849474
#% 
#!
  
#*CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data.
#@Qunyuan Zhang,Li Ding,David E. Larson,Daniel C. Koboldt,Michael D. McLellan,Ken Chen,Xiaoqi Shi,Aldi Kraja,Elaine R. Mardis,Richard K. Wilson,Ingrid B. Borecki,Michael A. Province
#t2010
#cBioinformatics
#index2849420
#% 
#!
  
#*Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq.
#@Frank Johannes,René Wardenaar,Maria Colomé-Tatché,Florence Mousson,Petra de Graaf,Michal Mokry,Victor Guryev,H. Th. Marc Timmers,Edwin Cuppen,Ritsert C. Jansen
#t2010
#cBioinformatics
#index2849535
#% 
#!
  
#*Bisque: a platform for bioimage analysis and management.
#@Kristian Kvilekval,Dmitry Fedorov,Boguslaw Obara,Ambuj K. Singh,B. S. Manjunath
#t2010
#cBioinformatics
#index2849492
#% 
#!
  
#*Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes.
#@Matthieu Muffato,Alexandra Louis,Charles-Edouard Poisnel,Hugues Roest Crollius
#t2010
#cBioinformatics
#index2849491
#% 
#!
  
#*GO-Bayes: Gene Ontology-based overrepresentation analysis using a Bayesian approach.
#@Song Zhang,Jing Cao,Y. Megan Kong,Richard H. Scheuermann
#t2010
#cBioinformatics
#index2849565
#% 
#!
  
#*Skyline: an open source document editor for creating and analyzing targeted proteomics experiments.
#@Brendan MacLean,Daniela M. Tomazela,Nicholas Shulman,Matthew Chambers,Gregory L. Finney,Barbara Frewen,Randall Kern,David L. Tabb,Daniel C. Liebler,Michael J. MacCoss
#t2010
#cBioinformatics
#index2849586
#% 
#!
  
#*: efficient target prediction for H/ACA snoRNAs.
#@Hakim Tafer,Stephanie Kehr,Jana Hertel,Ivo L. Hofacker,Peter F. Stadler
#t2010
#cBioinformatics
#index2849438
#% 
#!
  
#*Annotation confidence score for genome annotation: a genome comparison approach.
#@Youngik Yang,Donald Gilbert,Sun Kim
#t2010
#cBioinformatics
#index2849405
#% 
#!
  
#*ACCUSA - accurate SNP calling on draft genomes.
#@Sebastian Fröhler,Christoph Dieterich
#t2010
#cBioinformatics
#index2849648
#% 
#!
  
#*hPDI: a database of experimental human protein-DNA interactions.
#@Zhi Xie,Shaohui Hu,Seth Blackshaw,Heng Zhu,Jiang Qian
#t2010
#cBioinformatics
#index2849519
#% 
#!
  
#*Computational protein profile similarity screening for quantitative mass spectrometry experiments.
#@Marc Kirchner,Bernhard Y. Renard,Ullrich Köthe,Darryl J. Pappin,Fred A. Hamprecht,Hanno Steen,Judith A. J. Steen
#t2010
#cBioinformatics
#index2849463
#% 
#!
  
#*Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments.
#@Liam J. McGuffin,Daniel B. Roche
#t2010
#cBioinformatics
#index2849484
#% 
#!
  
#*DASS-GUI: a user interface for identification and analysis of significant patterns in non-sequential data.
#@Jens Hollunder,Maik Friedel,Martin Kuiper,Thomas Wilhelm
#t2010
#cBioinformatics
#index2849594
#% 
#!
  
#*Modeling the interplay of single-stranded binding proteins and nucleic acid secondary structure.
#@Robert A. Forties,Ralf Bundschuh
#t2010
#cBioinformatics
#index2849612
#% 
#!
  
#*DR-Integrator: a new analytic tool for integrating DNA copy number and gene expression data.
#@Keyan Salari,Robert Tibshirani,Jonathan R. Pollack
#t2010
#cBioinformatics
#index2849509
#% 
#!
  
#*Identifying biologically relevant differences between metagenomic communities.
#@Donovan H. Parks,Robert G. Beiko
#t2010
#cBioinformatics
#index2849453
#% 
#!
  
#*Structural variation analysis with strobe reads.
#@Anna Ritz,Ali Bashir,Benjamin J. Raphael
#t2010
#cBioinformatics
#index2849655
#% 
#!
  
#*: a Bioconductor package for differential expression analysis of digital gene expression data.
#@Mark D. Robinson,Davis J. McCarthy,Gordon K. Smyth
#t2010
#cBioinformatics
#index2849475
#% 
#!
  
#*webMGR: an online tool for the multiple genome rearrangement problem.
#@Chi Ho Lin,Hao Zhao,Sean Harry Lowcay,Atif Shahab,Guillaume Bourque
#t2010
#cBioinformatics
#index2849520
#% 
#!
  
#*PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches.
#@Nathan S. Watson-Haigh,Haja N. Kadarmideen,Antonio Reverter
#t2010
#cBioinformatics
#index2849462
#% 
#!
  
#*Small-sample precision of ROC-related estimates.
#@Blaise Hanczar,Jianping Hua,Chao Sima,John N. Weinstein,Michael L. Bittner,Edward R. Dougherty
#t2010
#cBioinformatics
#index2849538
#% 
#!
  
#*ChiBE: interactive visualization and manipulation of BioPAX pathway models.
#@Ozgun Babur,Ugur Dogrusöz,Emek Demir,Chris Sander
#t2010
#cBioinformatics
#index2849439
#% 
#!
  
#*Mutual information is critically dependent on prior assumptions: would the estimate of mutual information please identify itself?
#@Andrew D. Fernandes,Gregory B. Gloor
#t2010
#cBioinformatics
#index2849629
#% 
#!
  
#*MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8.
#@Zheng Wang,Jesse Eickholt,Jianlin Cheng
#t2010
#cBioinformatics
#index2849434
#% 
#!
  
#*Tablet - next generation sequence assembly visualization.
#@Iain Milne,Micha Bayer,Linda Cardle,Paul Shaw,Gordon Stephen,Frank Wright,David Marshall
#t2010
#cBioinformatics
#index2849601
#% 
#!
  
#*Estimating DNA coverage and abundance in metagenomes using a gamma approximation.
#@Sean D. Hooper,Daniel Dalevi,Amrita Pati,Konstantinos Mavrommatis,Natalia Ivanova,Nikos Kyrpides
#t2010
#cBioinformatics
#index2849448
#% 
#!
  
#*Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in .
#@Robert T. Morris,Timothy R. O'Connor,John J. Wyrick
#t2010
#cBioinformatics
#index2849552
#% 
#!
  
#*iDBPs: a web server for the identification of DNA binding proteins.
#@Guy Nimrod,Maya Schushan,András Szilágyi,Christina Leslie,Nir Ben-Tal
#t2010
#cBioinformatics
#index2849566
#% 
#!
  
#*invertFREGENE: software for simulating inversions in population genetic data.
#@Paul F. O'Reilly,Lachlan J. M. Coin,Clive J. Hoggart
#t2010
#cBioinformatics
#index2849406
#% 
#!
  
#*QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects.
#@Emese Meglécz,Caroline Costedoat,Vincent Dubut,André Gilles,Thibaut Malausa,Nicolas Pech,Jean-François Martin
#t2010
#cBioinformatics
#index2849616
#% 
#!
  
#*Automatic clustering of docking poses in virtual screening process using self-organizing map.
#@Guillaume Bouvier,Nathalie Evrard-Todeschi,Jean-Pierre Girault,Gildas Bertho
#t2010
#cBioinformatics
#index2849571
#% 
#!
  
#*Biased hosting of intronic microRNA genes.
#@David Golan,Carmit Levy,Brad Friedman,Noam Shomron
#t2010
#cBioinformatics
#index2849543
#% 
#!
  
#*Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks.
#@Jing Gao,V. Glenn Tarcea,Alla Karnovsky,Barbara R. Mirel,Terry E. Weymouth,Christopher W. Beecher,James D. Cavalcoli,Brian D. Athey,Gilbert S. Omenn,Charles F. Burant,H. V. Jagadish
#t2010
#cBioinformatics
#index2849470
#% 
#!
  
#*Accurate confidence aware clustering of array CGH tumor profiles.
#@Bart P. P. van Houte,Jaap Heringa
#t2010
#cBioinformatics
#index2849489
#% 
#!
  
#*ScripTree: scripting phylogenetic graphics.
#@François Chevenet,Olivier Croce,Maxime Hebrard,Richard Christen,Vincent Berry
#t2010
#cBioinformatics
#index2849510
#% 
#!
  
#*An extended IUPAC nomenclature code for polymorphic nucleic acids.
#@Andrew D. Johnson
#t2010
#cBioinformatics
#index2849642
#% 
#!
  
#*BoolNet - an R package for generation, reconstruction and analysis of Boolean networks.
#@Christoph Müssel,Martin Hopfensitz,Hans A. Kestler
#t2010
#cBioinformatics
#index2849647
#% 
#!
  
#*Temporal clustering by affinity propagation reveals transcriptional modules in .
#@Steven J. Kiddle,Oliver P. F. Windram,Stuart McHattie,Andrew Meade,Jim Beynon,Vicky Buchanan-Wollaston,Katherine J. Denby,Sach Mukherjee
#t2010
#cBioinformatics
#index2849621
#% 
#!
  
#*BamView: viewing mapped read alignment data in the context of the reference sequence.
#@Tim Carver,Ulrike Böhme,Thomas D. Otto,Julian Parkhill,Matthew Berriman
#t2010
#cBioinformatics
#index2849607
#% 
#!
  
#*Quantifying the biological significance of gene ontology biological processes - implications for the analysis of systems-wide data.
#@Monica Chagoyen,Florencio Pazos
#t2010
#cBioinformatics
#index2849417
#% 
#!
  
#*A novel method for accurate one-dimensional protein structure prediction based on fragment matching.
#@Tuping Zhou,Nanjiang Shu,Sven Hovmöller
#t2010
#cBioinformatics
#index2849496
#% 
#!
  
#*MSMSpdbb: providing protein databases of closely related organisms to improve proteomic characterization of prokaryotic microbes.
#@Gustavo A. de Souza,Magnus Ø. Arntzen,Harald G. Wiker
#t2010
#cBioinformatics
#index2849602
#% 
#!
  
#*PSiFR: an integrated resource for prediction of protein structure and function.
#@Shashi Bhushan Pandit,Michal Brylinski,Hongyi Zhou,Mu Gao,Adrian K. Arakaki,Jeffrey Skolnick
#t2010
#cBioinformatics
#index2849428
#% 
#!
  
#*Bayesian model selection for characterizing genomic imprinting effects and patterns.
#@Runqing Yang,Xin Wang,Zeyuan Wu,Daniel R. Prows,Min Lin
#t2010
#cBioinformatics
#index2849557
#% 
#!
  
#*Quantifying uncertainty in genotype calls.
#@Benilton Carvalho,Thomas A. Louis,Rafael A. Irizarry
#t2010
#cBioinformatics
#index2849414
#% 
#!
  
#*A censored beta mixture model for the estimation of the proportion of non-differentially expressed genes.
#@Anastasios Markitsis,Yinglei Lai
#t2010
#cBioinformatics
#index2849501
#% 
#!
  
#*Curators of the world unite: the International Society of Biocuration.
#@Alex Bateman
#t2010
#cBioinformatics
#index2849515
#% 
#!
  
#*emPAI Calc - for the estimation of protein abundance from large-scale identification data by liquid chromatography-tandem mass spectrometry.
#@Kosaku Shinoda,Masaru Tomita,Yasushi Ishihama
#t2010
#cBioinformatics
#index2849524
#% 
#!
  
#*: deletion/substitution/addition algorithm for partitioning the covariate space in prediction.
#@Annette M. Molinaro,Karen Lostritto,Mark J. van der Laan
#t2010
#cBioinformatics
#index2849633
#% 
#!
  
#*Viewing cancer genes from co-evolving gene modules.
#@Jing Zhu,Hui Xiao,Xiaopei Shen,Jing Wang,Jinfeng Zou,Lin Zhang,Da Yang,Wencai Ma,Chen Yao,Xue Gong,Min Zhang,Yang Zhang,Zheng Guo
#t2010
#cBioinformatics
#index2849628
#% 
#!
  
#*Domain adaptation for semantic role labeling in the biomedical domain.
#@Daniel Dahlmeier,Hwee Tou Ng
#t2010
#cBioinformatics
#index2849529
#% 
#!
  
#*Accelerated similarity searching and clustering of large compound sets by geometric embedding and locality sensitive hashing.
#@Yiqun Cao,Tao Jiang,Thomas Girke
#t2010
#cBioinformatics
#index2849440
#% 
#!
  
#*Validation of double digest selective label database for sequenced prokaryotic genomes.
#@Valery Terletskiy,Valentina Tyshchenko,Ilargi Martinez-Ballesteros,Javier Garaizar,Joseba Bikandi
#t2010
#cBioinformatics
#index2849476
#% 
#!
  
#*TopoGSA: network topological gene set analysis.
#@Enrico Glaab,Anaïs Baudot,Natalio Krasnogor,Alfonso Valencia
#t2010
#cBioinformatics
#index2849656
#% 
#!
  
#*r2cat: synteny plots and comparative assembly.
#@Peter Husemann,Jens Stoye
#t2010
#cBioinformatics
#index2849580
#% 
#!
  
#*Protein secondary structure appears to be robust under evolution while protein disorder appears not to be.
#@Christian Schaefer,Avner Schlessinger,Burkhard Rost
#t2010
#cBioinformatics
#index2849454
#% 
#!
  
#*The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps.
#@Carson M. Andorf,Carolyn J. Lawrence,Lisa C. Harper,Mary L. Schaeffer,Darwin A. Campbell,Taner Z. Sen
#t2010
#cBioinformatics
#index2849593
#% 
#!
  
#*Computational quantification of metabolic fluxes from a single isotope snapshot: application to an animal biopsy.
#@Thomas W. Binsl,David J. C. Alders,Jaap Heringa,A. B. Johan Groeneveld,Johannes H. G. M. van Beek
#t2010
#cBioinformatics
#index2849447
#% 
#!
  
#*Reporting bias when using real data sets to analyze classification performance.
#@Mohammadmahdi R. Yousefi,Jianping Hua,Chao Sima,Edward R. Dougherty
#t2010
#cBioinformatics
#index2849537
#% 
#!
  
#*Optimization of minimum set of protein-DNA interactions: a quasi exact solution with minimum over-fitting.
#@N. A. Temiz,Andrew Trapp,Oleg A. Prokopyev,Carlos J. Camacho
#t2010
#cBioinformatics
#index2849596
#% 
#!
  
#*WebPARE: web-computing for inferring genetic or transcriptional interactions.
#@Cheng-Long Chuang,Jia-Hong Wu,Chi-Sheng Cheng,Grace S. Shieh
#t2010
#cBioinformatics
#index2849551
#% 
#!
  
#*Gene function prediction from synthetic lethality networks via ranking on demand.
#@Christoph Lippert,Zoubin Ghahramani,Karsten M. Borgwardt
#t2010
#cBioinformatics
#index2849461
#% 
#!
  
#*GATE: software for the analysis and visualization of high-dimensional time series expression data.
#@Ben D. MacArthur,Alexander Lachmann,Ihor Lemischka,Avi Ma'ayan
#t2010
#cBioinformatics
#index2849585
#% 
#!
  
#*SimBoolNet - a Cytoscape plugin for dynamic simulation of signaling networks.
#@Jie Zheng,David Zhang,Pawel F. Przytycki,Rafal Zielinski,Jacek Capala,Teresa M. Przytycka
#t2010
#cBioinformatics
#index2849433
#% 
#!
  
#*Expertomica Cells: analysis of cell monolayer development.
#@Tomás Levitner,Stepán Timr,Dalibor Stys
#t2010
#cBioinformatics
#index2849558
#% 
#!
  
#*A fast and automated solution for accurately resolving protein domain architectures.
#@Corin Yeats,Oliver Redfern,Christine A. Orengo
#t2010
#cBioinformatics
#index2849504
#% 
#!
  
#*BEDTools: a flexible suite of utilities for comparing genomic features.
#@Aaron R. Quinlan,Ira M. Hall
#t2010
#cBioinformatics
#index2849469
#% 
#!
  
#*Biomarker detection in the integration of multiple multi-class genomic studies.
#@Shuya Lu,Jia Li,Chi Song,Kui Shen,George C. Tseng
#t2010
#cBioinformatics
#index2849544
#% 
#!
  
#*MATICCE: mapping transitions in continuous character evolution.
#@Andrew L. Hipp,Marcial Escudero
#t2010
#cBioinformatics
#index2849507
#% 
#!
  
#*rMAT - an R/Bioconductor package for analyzing ChIP-chip experiments.
#@Arnaud Droit,Charles Cheung,Raphael Gottardo
#t2010
#cBioinformatics
#index2849577
#% 
#!
  
#*JAMIE: joint analysis of multiple ChIP-chip experiments.
#@Hao Wu,Hongkai Ji
#t2010
#cBioinformatics
#index2849627
#% 
#!
  
#*Estimating replicate time shifts using Gaussian process regression.
#@Qiang Liu,Kevin K. Lin,Bogi Andersen,Padhraic Smyth,Alexander T. Ihler
#t2010
#cBioinformatics
#index2849521
#% 
#!
  
#*iMotifs: an integrated sequence motif visualization and analysis environment.
#@Matias Piipari,Thomas A. Down,Harpreet Kaur Saini,Anton J. Enright,Tim J. P. Hubbard
#t2010
#cBioinformatics
#index2849613
#% 
#!
  
#*Predictive rule inference for epistatic interaction detection in genome-wide association studies.
#@Xiang Wan,Can Yang,Qiang Yang,Hong Xue,Nelson L. S. Tang,Weichuan Yu
#t2010
#cBioinformatics
#index2849483
#% 
#!
  
#*Phenopedia and Genopedia: disease-centered and gene-centered views of the evolving knowledge of human genetic associations.
#@Wei Yu,Melinda Clyne,Muin J. Khoury,Marta Gwinn
#t2010
#cBioinformatics
#index2849599
#% 
#!
  
#*Tmod: toolbox of motif discovery.
#@Hanchang Sun,Yuan Yuan,Yibo Wu,Hui Liu,Jun S. Liu,Hongwei Xie
#t2010
#cBioinformatics
#index2849560
#% 
#!
  
#*Meta-analysis for pathway enrichment analysis when combining multiple genomic studies.
#@Kui Shen,George C. Tseng
#t2010
#cBioinformatics
#index2849639
#% 
#!
  
#*Non-linear classification for on-the-fly fractional mass filtering and targeted precursor fragmentation in mass spectrometry experiments.
#@Marc Kirchner,Wiebke Timm,Peying Fong,Philine Wangemann,Hanno Steen
#t2010
#cBioinformatics
#index2849413
#% 
#!
  
#*ParaSAM: a parallelized version of the significance analysis of microarrays algorithm.
#@Ashok Sharma,Jieping Zhao,Robert Podolsky,Richard A. McIndoe
#t2010
#cBioinformatics
#index2849653
#% 
#!
  
#*Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data.
#@Antonio Reverter,Nicholas J. Hudson,Shivashankar H. Nagaraj,Miguel Pérez-Enciso,Brian P. Dalrymple
#t2010
#cBioinformatics
#index2849540
#% 
#!
  
#*A hidden Ising model for ChIP-chip data analysis.
#@Qianxing Mo,Faming Liang
#t2010
#cBioinformatics
#index2849403
#% 
#!
  
#*COPS Benchmark: interactive analysis of database search methods.
#@Karl Frank,Markus Gruber,Manfred J. Sippl
#t2010
#cBioinformatics
#index2849574
#% 
#!
  
#*ProteinWorldDB: querying radical pairwise alignments among protein sets from complete genomes.
#@Thomas D. Otto,Marcos Catanho,Cristian Tristão,Márcia Bezerra,Renan Mathias Fernandes,Guilherme Steinberger Elias,Alexandre Capeletto Scaglia,Bill Bovermann,Viktors Berstis,Sérgio Lifschitz,Antonio Basílio de Miranda,Wim M. Degrave
#t2010
#cBioinformatics
#index2849610
#% 
#!
  
#*A principal skeleton algorithm for standardizing confocal images of fruit fly nervous systems.
#@Lei Qu,Hanchuan Peng
#t2010
#cBioinformatics
#index2849563
#% 
#!
  
#*CD-HIT Suite: a web server for clustering and comparing biological sequences.
#@Ying Huang,Beifang Niu,Ying Gao,Limin Fu,Weizhong Li
#t2010
#cBioinformatics
#index2849468
#% 
#!
  
#*VIBE 2.0: Visual Integration for Bayesian Evaluation.
#@Nathaniel Beagley,Kelly G. Stratton,Bobbie-Jo M. Webb-Robertson
#t2010
#cBioinformatics
#index2849490
#% 
#!
  
#*The power of protein interaction networks for associating genes with diseases.
#@Saket Navlakha,Carl Kingsford
#t2010
#cBioinformatics
#index2849531
#% 
#!
  
#*Correcting population stratification in genetic association studies using a phylogenetic approach.
#@Mingyao Li,Muredach P. Reilly,Daniel J. Rader,Li-San Wang
#t2010
#cBioinformatics
#index2849518
#% 
#!
  
#*GWAF: an R package for genome-wide association analyses with family data.
#@Ming-Huei Chen,Qiong Yang
#t2010
#cBioinformatics
#index2849412
#% 
#!
  
#*Bayesian variable selection for disease classification using gene expression data.
#@Ai-Jun Yang,Xin-Yuan Song
#t2010
#cBioinformatics
#index2849582
#% 
#!
  
#*Joint estimation of DNA copy number from multiple platforms.
#@Nancy R. Zhang,Yasin Senbabaoglu,Jun Z. Li
#t2010
#cBioinformatics
#index2849588
#% 
#!
  
#*EGAN: exploratory gene association networks.
#@Jesse Paquette,Taku A. Tokuyasu
#t2010
#cBioinformatics
#index2849432
#% 
#!
  
#*Filtering error from SOLiD Output.
#@Ariella Sasson,Todd P. Michael
#t2010
#cBioinformatics
#index2849541
#% 
#!
  
#*Assigning roles to DNA regulatory motifs using comparative genomics.
#@Fabian A. Buske,Mikael Bodén,Denis C. Bauer,Timothy L. Bailey
#t2010
#cBioinformatics
#index2849587
#% 
#!
  
#*Pathway analysis using random forests with bivariate node-split for survival outcomes.
#@Herbert Pang,Debayan Datta,Hongyu Zhao
#t2010
#cBioinformatics
#index2849460
#% 
#!
  
#*A visual framework for sequence analysis using -grams and spectral rearrangement.
#@Stefan Maetschke,Karin S. Kassahn,Jasmyn A. Dunn,Siew-Ping Han,Eva Z. Curley,Katryn J. Stacey,Mark A. Ragan
#t2010
#cBioinformatics
#index2849600
#% 
#!
  
#*A personalized microRNA microarray normalization method using a logistic regression model.
#@Bin Wang,Xiao-Feng Wang,Paul Howell,Xuemin Qian,Kun Huang,Adam I. Riker,Jingfang Ju,Yaguang Xi
#t2010
#cBioinformatics
#index2849508
#% 
#!
  
#*Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in ID.
#@Yun Niu,David Otasek,Igor Jurisica
#t2010
#cBioinformatics
#index2849503
#% 
#!
  
#*FoldAmyloid: a method of prediction of amyloidogenic regions from protein sequence.
#@Sergiy O. Garbuzynskiy,Michail Yu. Lobanov,Oxana V. Galzitskaya
#t2010
#cBioinformatics
#index2849559
#% 
#!
  
#*Mixture-model based estimation of gene expression variance from public database improves identification of differentially expressed genes in small sized microarray data.
#@Mingoo Kim,Sung-Bum Cho,Ju Han Kim
#t2010
#cBioinformatics
#index2849498
#% 
#!
  
#*PathGen: a transitive gene pathway generator.
#@Kendell Clement,Nathaniel Gustafson,Amanda Berbert,Hyrum Carroll,Christopher Merris,Ammon Olsen,Mark J. Clement,Quinn Snell,Jared Allen,Randall J. Roper
#t2010
#cBioinformatics
#index2849419
#% 
#!
  
#*Identification of microRNA activity by Targets' Reverse EXpression.
#@Stefano Volinia,Rosa Visone,Marco Galasso,Elda Rossi,Carlo Maria Croce
#t2010
#cBioinformatics
#index2849513
#% 
#!
  
#*Pandora, a PAthway and Network DiscOveRy Approach based on common biological evidence.
#@Kelvin Xi Zhang,B. F. Francis Ouellette
#t2010
#cBioinformatics
#index2849451
#% 
#!
  
#*Bioinformatics challenges for genome-wide association studies.
#@Jason H. Moore,Folkert W. Asselbergs,Scott M. Williams
#t2010
#cBioinformatics
#index2849595
#% 
#!
  
#*Phybase: an R package for species tree analysis.
#@Liang Liu,Lili Yu
#t2010
#cBioinformatics
#index2849590
#% 
#!
  
#*Novel statistical framework to identify differentially expressed genes allowing transcriptomic background differences.
#@Zhi-Qiang Ling,Yi Wang,Kenichi Mukaisho,Takanori Hattori,Takeshi Tatsuta,Ming-Hua Ge,Li Jin,Wei-Min Mao,Hiroyuki Sugihara
#t2010
#cBioinformatics
#index2849635
#% 
#!
  
#*Random distance dependent attachment as a model for neural network generation in the .
#@Royi Itzhack,Yoram Louzoun
#t2010
#cBioinformatics
#index2849487
#% 
#!
  
#*CMap3D: a 3D visualization tool for comparative genetic maps.
#@Chris Duran,Zoran Boskovic,Michael Imelfort,Jacqueline Batley,Nicholas A. Hamilton,David Edwards
#t2010
#cBioinformatics
#index2849526
#% 
#!
  
#*Exploring classification strategies with the CoEPrA 2006 contest.
#@Ozgur Demir-Kavuk,Henning Riedesel,Ernst-Walter Knapp
#t2010
#cBioinformatics
#index2849569
#% 
#!
  
#*MARTA: a suite of Java-based tools for assigning taxonomic status to DNA sequences.
#@Matthew Horton,Natacha Bodenhausen,Joy Bergelson
#t2010
#cBioinformatics
#index2849467
#% 
#!
  
#*DCDB: Drug combination database.
#@Yanbin Liu,Bin Hu,Chengxin Fu,Xin Chen
#t2010
#cBioinformatics
#index2849459
#% 
#!
  
#*HALO - a Java framework for precise transcript half-life determination.
#@Caroline C. Friedel,Stefanie Kaufmann,Lars Dölken,Ralf Zimmer
#t2010
#cBioinformatics
#index2849654
#% 
#!
  
#*ESBTL: efficient PDB parser and data structure for the structural and geometric analysis of biological macromolecules.
#@Sébastien Loriot,Frédéric Cazals,Julie Bernauer
#t2010
#cBioinformatics
#index2849532
#% 
#!
  
#*Pitfalls of supervised feature selection.
#@Pawel Smialowski,Dmitrij Frishman,Stefan Kramer
#t2010
#cBioinformatics
#index2849539
#% 
#!
  
#*CellMC - a multiplatform model compiler for the Cell Broadband Engine and x86.
#@Emmet Caulfield,Andreas Hellander
#t2010
#cBioinformatics
#index2849429
#% 
#!
  
#*Multi-threaded vectorized distance matrix computation on the CELL/BE and x86/SSE2 architectures.
#@Adrianto Wirawan,Chee Keong Kwoh,Bertil Schmidt
#t2010
#cBioinformatics
#index2849618
#% 
#!
  
#*Dynamically weighted clustering with noise set.
#@Yijing Shen,Wei Sun,Ker-Chau Li
#t2010
#cBioinformatics
#index2849488
#% 
#!
  
#*Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.
#@Iman Hajirasouliha,Fereydoun Hormozdiari,Can Alkan,Jeffrey M. Kidd,Inanç Birol,Evan E. Eichler,Süleyman Cenk Sahinalp
#t2010
#cBioinformatics
#index2849644
#% 
#!
  
#*PaperMaker: validation of biomedical scientific publications.
#@Dietrich Rebholz-Schuhmann,S. Kavaliauskas,Piotr Pezik
#t2010
#cBioinformatics
#index2849605
#% 
#!
  
#*MAVEN: a tool for visualization and functional analysis of genome-wide association results.
#@Kanchana Narayanan,Jing Li
#t2010
#cBioinformatics
#index2849550
#% 
#!
  
#*Kinase selectivity potential for inhibitors targeting the ATP binding site: a network analysis.
#@Danzhi Huang,Ting Zhou,Karine Lafleur,Cristina Nevado,Amedeo Caflisch
#t2010
#cBioinformatics
#index2849442
#% 
#!
  
#*sORF finder: a program package to identify small open reading frames with high coding potential.
#@Kousuke Hanada,Kenji Akiyama,Tetsuya Sakurai,Tetsuro Toyoda,Kazuo Shinozaki,Shin-Han Shiu
#t2010
#cBioinformatics
#index2849404
#% 
#!
  
#*Faster computation of exact RNA shape probabilities.
#@Stefan Janssen,Robert Giegerich
#t2010
#cBioinformatics
#index2849506
#% 
#!
  
#*Inferring dynamic gene networks under varying conditions for transcriptomic network comparison.
#@Teppei Shimamura,Seiya Imoto,Rui Yamaguchi,Masao Nagasaki,Satoru Miyano
#t2010
#cBioinformatics
#index2849477
#% 
#!
  
#*PyNAST: a flexible tool for aligning sequences to a template alignment.
#@J. Gregory Caporaso,Kyle Bittinger,Frederic D. Bushman,Todd Z. DeSantis,Gary L. Andersen,Rob Knight
#t2010
#cBioinformatics
#index2849411
#% 
#!
  
#*SICAGO: Semi-supervised cluster analysis using semantic distance between gene pairs in Gene Ontology.
#@Bo-Yeong Kang,Song Ko,Dae-Won Kim
#t2010
#cBioinformatics
#index2849634
#% 
#!
  
#*Standard virtual biological parts: a repository of modular modeling components for synthetic biology.
#@M. T. Cooling,V. Rouilly,G. Misirli,J. Lawson,T. Yu,Jennifer Hallinan,Anil Wipat
#t2010
#cBioinformatics
#index2849452
#% 
#!
  
#*Extraction and comparison of gene expression patterns from 2D RNA hybridization images.
#@Daniel L. Mace,Nicole Varnado,Weiping Zhang,Erwin Frise,Uwe Ohler
#t2010
#cBioinformatics
#index2849608
#% 
#!
  
#*GOSemSim: an R package for measuring semantic similarity among GO terms and gene products.
#@Guangchuang Yu,Fei Li,Yide Qin,Xiaochen Bo,Yibo Wu,Shengqi Wang
#t2010
#cBioinformatics
#index2849495
#% 
#!
  
#*BRAT: bisulfite-treated reads analysis tool.
#@Elena Yavorska Harris,Nadia Ponts,Aleksandr Levchuk,Karine G. Le Roch,Stefano Lonardi
#t2010
#cBioinformatics
#index2849422
#% 
#!
  
#*Identification of non-Hodgkin's lymphoma prognosis signatures using the CTGDR method.
#@Shuangge Ma,Yawei Zhang,Jian Huang,Xuesong Han,Theodore Holford,Qing Lan,Nathaniel Rothman,Peter Boyle,Tongzhang Zheng
#t2010
#cBioinformatics
#index2849478
#% 
#!
  
#*Multi-objective tag SNPs selection using evolutionary algorithms.
#@Chuan-Kang Ting,Wei-Ting Lin,Yao-Ting Huang
#t2010
#cBioinformatics
#index2849625
#% 
#!
  
#*iPHACE: integrative navigation in pharmacological space.
#@Ricard García-Serna,Oleg Ursu,Tudor I. Oprea,Jordi Mestres
#t2010
#cBioinformatics
#index2849528
#% 
#!
  
#*HIV classification using the coalescent theory.
#@Ingo Bulla,Anne-Kathrin Schultz,Fabian Schreiber,Ming Zhang,Thomas Leitner,Bette Korber,Burkhard Morgenstern,Mario Stanke
#t2010
#cBioinformatics
#index2849641
#% 
#!
  
#*AQUA: automated quality improvement for multiple sequence alignments.
#@Jean Muller,Christopher J. Creevey,Julie D. Thompson,Detlev Arendt,Peer Bork
#t2010
#cBioinformatics
#index2849523
#% 
#!
  
#*Biological network comparison using graphlet degree distribution.
#@Natasa Przulj
#t2010
#cBioinformatics
#index2849505
#% 
#!
  
#*LegumeTFDB: an integrative database of , and transcription factors.
#@Keiichi Mochida,Takuhiro Yoshida,Tetsuya Sakurai,Kazuko Yamaguchi-Shinozaki,Kazuo Shinozaki,Lam-Son Phan Tran
#t2010
#cBioinformatics
#index2849431
#% 
#!
  
#*Modular analysis of gene expression data with R.
#@Gábor Csárdi,Zoltan Kutalik,Sven Bergmann
#t2010
#cBioinformatics
#index2849636
#% 
#!
  
#*Robust biomarker identification for cancer diagnosis with ensemble feature selection methods.
#@Thomas Abeel,Thibault Helleputte,Yves Van de Peer,Pierre Dupont,Yvan Saeys
#t2010
#cBioinformatics
#index2849598
#% 
#!
  
#*Co-expression networks: graph properties and topological comparisons.
#@Ramon Xulvi-Brunet,Hongzhe Li
#t2010
#cBioinformatics
#index2849516
#% 
#!
  
#*Simulation-based model selection for dynamical systems in systems and population biology.
#@Tina Toni,Michael P. H. Stumpf
#t2010
#cBioinformatics
#index2849562
#% 
#!
  
#*SCAN: SNP and copy number annotation.
#@Eric R. Gamazon,Wei Zhang,Anuar Konkashbaev,Shiwei Duan,Emily O. Kistner,Dan L. Nicolae,M. Eileen Dolan,Nancy J. Cox
#t2010
#cBioinformatics
#index2849421
#% 
#!
  
#*jORCA: easily integrating bioinformatics Web Services.
#@Victoria Martin-Requena,Javier Ríos,Maximiliano García,Sergio Ramírez,Oswaldo Trelles
#t2010
#cBioinformatics
#index2849597
#% 
#!
  
#*An Ergatis-based prokaryotic genome annotation web server.
#@Chris Hemmerich,Aaron Buechlein,Ram Podicheti,Kashi Vishwanath Revanna,Qunfeng Dong
#t2010
#cBioinformatics
#index2849547
#% 
#!
  
#*GeneE: Gene and protein query expansion with disambiguation.
#@Martijn J. Schuemie,Ning Kang,Maarten L. Hekkelman,Jan A. Kors
#t2010
#cBioinformatics
#index2849615
#% 
#!
  
#*The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing.
#@Nathan L. Clement,Quinn Snell,Mark J. Clement,Peter C. Hollenhorst,Jahnvi Purwar,Barbara J. Graves,Bradley R. Cairns,W. Evan Johnson
#t2010
#cBioinformatics
#index2849556
#% 
#!
  
#*The gputools package enables GPU computing in R.
#@Joshua Buckner,Justin Wilson,Mark Seligman,Brian D. Athey,Stanley J. Watson,Fan Meng
#t2010
#cBioinformatics
#index2849579
#% 
#!
  
#*CoP: a database for characterizing co-expressed gene modules with biological information in plants.
#@Yoshiyuki Ogata,Hideyuki Suzuki,Nozomu Sakurai,Daisuke Shibata
#t2010
#cBioinformatics
#index2849651
#% 
#!
  
#*Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1.
#@Andreas S. Richter,Christian Schleberger,Rolf Backofen,Claudia Steglich
#t2010
#cBioinformatics
#index2849542
#% 
#!
  
#*DataPflex: a MATLAB-based tool for the manipulation and visualization of multidimensional datasets.
#@Bart S. Hendriks,Christopher W. Espelin
#t2010
#cBioinformatics
#index2849572
#% 
#!
  
#*Payao: a community platform for SBML pathway model curation.
#@Yukiko Matsuoka,Samik Ghosh,Norihiro Kikuchi,Hiroaki Kitano
#t2010
#cBioinformatics
#index2849643
#% 
#!
  
#*Limited contribution of stem-loop potential to symmetry of single-stranded genomic DNA.
#@Shang-Hong Zhang,Ya-Zhi Huang
#t2010
#cBioinformatics
#index2849441
#% 
#!
  
#*Multifactor dimensionality reduction for graphics processing units enables genome-wide testing of epistasis in sporadic ALS.
#@Casey S. Greene,Nicholas A. Sinnott-Armstrong,Daniel S. Himmelstein,Paul J. Park,Jason H. Moore,Brent T. Harris
#t2010
#cBioinformatics
#index2849410
#% 
#!
  
#*PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta.
#@Sidhartha Chaudhury,Sergey Lyskov,Jeffrey J. Gray
#t2010
#cBioinformatics
#index2849415
#% 
#!
  
#*RNA-Seq gene expression estimation with read mapping uncertainty.
#@Bo Li,Victor Ruotti,Ron M. Stewart,James A. Thomson,Colin N. Dewey
#t2010
#cBioinformatics
#index2849494
#% 
#!
  
#*CPFP: a central proteomics facilities pipeline.
#@David C. Trudgian,Benjamin Thomas,Simon J. McGowan,Benedikt M. Kessler,Mogjiborahman Salek,Oreste Acuto
#t2010
#cBioinformatics
#index2849589
#% 
#!
  
#*Globally, unrelated protein sequences appear random.
#@Daniel T. Lavelle,William R. Pearson
#t2010
#cBioinformatics
#index2849449
#% 
#!
  
#*MicroRazerS: rapid alignment of small RNA reads.
#@Anne-Katrin Emde,Marcel Grunert,David Weese,Knut Reinert,Silke R. Sperling
#t2010
#cBioinformatics
#index2849409
#% 
#!
  
#*Fast and SNP-tolerant detection of complex variants and splicing in short reads.
#@Thomas D. Wu,Serban Nacu
#t2010
#cBioinformatics
#index2849401
#% 
#!
  
#*SBRML: a markup language for associating systems biology data with models.
#@Joseph O. Dada,Irena Spasic,Norman W. Paton,Pedro Mendes
#t2010
#cBioinformatics
#index2849570
#% 
#!
  
#*Active site prediction using evolutionary and structural information.
#@Sriram Sankararaman,Fei Sha,Jack F. Kirsch,Michael I. Jordan,Kimmen Sjölander
#t2010
#cBioinformatics
#index2849485
#% 
#!
  
#*mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets.
#@William Ritchie,Stephane Flamant,John E. J. Rasko
#t2010
#cBioinformatics
#index2849435
#% 
#!
  
#*Functional embedding for the classification of gene expression profiles.
#@Ping-Shi Wu,Hans-Georg Müller
#t2010
#cBioinformatics
#index2849561
#% 
#!
  
#*SoDA2: a Hidden Markov Model approach for identification of immunoglobulin rearrangements.
#@Supriya Munshaw,Thomas B. Kepler
#t2010
#cBioinformatics
#index2849416
#% 
#!
  
#*Treephyler: fast taxonomic profiling of metagenomes.
#@Fabian Schreiber,Peter Gumrich,Rolf Daniel,Peter Meinicke
#t2010
#cBioinformatics
#index2849430
#% 
#!
  
#*Predicting biodegradation products and pathways: a hybrid knowledge- and machine learning-based approach.
#@Jörg Wicker,Kathrin Fenner,Lynda B. M. Ellis,Lawrence P. Wackett,Stefan Kramer
#t2010
#cBioinformatics
#index2849575
#% 
#!
  
#*Modeling macro-molecular interfaces with .
#@Sébastien Loriot,Frédéric Cazals
#t2010
#cBioinformatics
#index2849480
#% 
#!
  
#*Modeling sample variables with an Experimental Factor Ontology.
#@James Malone,Ele Holloway,Tomasz Adamusiak,Misha Kapushesky,Jie Zheng,Nikolay Kolesnikov,Anna Zhukova,Alvis Brazma,Helen E. Parkinson
#t2010
#cBioinformatics
#index2849584
#% 
#!
  
#*ConceptGen: a gene set enrichment and gene set relation mapping tool.
#@Maureen A. Sartor,Vasudeva Mahavisno,Venkateshwar G. Keshamouni,James D. Cavalcoli,Zach Wright,Alla Karnovsky,Rork Kuick,H. V. Jagadish,Barbara Mirel,Terry E. Weymouth,Brian D. Athey,Gilbert S. Omenn
#t2010
#cBioinformatics
#index2849626
#% 
#!
  
#*A link between H3K27me3 mark and exon length in the gene promoters of pluripotent and differentiated cells.
#@Liang Chen
#t2010
#cBioinformatics
#index2849458
#% 
#!
  
#*Feature-incorporated alignment based ligand-binding residue prediction for carbohydrate-binding modules.
#@Wei-Yao Chou,Wei-I Chou,Tun-Wen Pai,Shu-Chuan Lin,Ting-Ying Jiang,Chuan Yi Tang,Margaret Dah-Tsyr Chang
#t2010
#cBioinformatics
#index2849567
#% 
#!
  
#*GonadSAGE: a comprehensive SAGE database for transcript discovery on male embryonic gonad development.
#@Tin-Lap Lee,Yunmin Li,Hoi-Hung Cheung,Janek Claus,Sumeeta Singh,Chandan Sastry,Owen M. Rennert,Yun-Fai Chris Lau,Wai-Yee Chan
#t2010
#cBioinformatics
#index2849534
#% 
#!
  
#*ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment.
#@Janez Konc,Dusanka Janezic
#t2010
#cBioinformatics
#index2849646
#% 
#!
  
#*Prediction of human functional genetic networks from heterogeneous data using RVM-based ensemble learning.
#@Chia-Chin Wu,Shahab Asgharzadeh,Timothy Triche,David Z. D'Argenio
#t2010
#cBioinformatics
#index2849471
#% 
#!
  
#*Improving protein secondary structure prediction using a simple -mer model.
#@Martin Madera,Ryan Calmus,Grant Thiltgen,Kevin Karplus,Julian Gough
#t2010
#cBioinformatics
#index2849611
#% 
#!
  
#*Bayesian rule learning for biomedical data mining.
#@Vanathi Gopalakrishnan,Jonathan L. Lustgarten,Shyam Visweswaran,Gregory F. Cooper
#t2010
#cBioinformatics
#index2849424
#% 
#!
  
#*High quality SNP calling using Illumina data at shallow coverage.
#@Nawar Malhis,Steven J. M. Jones
#t2010
#cBioinformatics
#index2849548
#% 
#!
  
#*Alignment-free local structural search by writhe decomposition.
#@Degui Zhi,Maxim Shatsky,Steven E. Brenner
#t2010
#cBioinformatics
#index2849637
#% 
#!
  
#*A algorithm for the consistency problem in multiple sequence alignment.
#@Eduardo Corel,Florian Pitschi,Burkhard Morgenstern
#t2010
#cBioinformatics
#index2849500
#% 
#!
  
#*The Gene Interaction Miner: a new tool for data mining contextual information for protein-protein interaction analysis.
#@Aaron Ikin,Carlos Riveros,Pablo Moscato,Alexandre Mendes
#t2010
#cBioinformatics
#index2849444
#% 
#!
  
#*CGHnormaliter: a Bioconductor package for normalization of array CGH data with many CNAs.
#@Bart P. P. van Houte,Thomas W. Binsl,Hannes Hettling,Jaap Heringa
#t2010
#cBioinformatics
#index2849632
#% 
#!
  
#*Penalized mixtures of factor analyzers with application to clustering high-dimensional microarray data.
#@Benhuai Xie,Wei Pan,Xiaotong Shen
#t2010
#cBioinformatics
#index2849493
#% 
#!
  
#*On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics.
#@Thang V. Pham,Sander R. Piersma,Marc Warmoes,Connie R. Jimenez
#t2010
#cBioinformatics
#index2849606
#% 
#!
  
#*An optimal experimental design approach to model discrimination in dynamic biochemical systems.
#@Dominik Skanda,Dirk Lebiedz
#t2010
#cBioinformatics
#index2849466
#% 
#!
  
#*LOTUS, a new domain associated with small RNA pathways in the germline.
#@Isabelle Callebaut,Jean Paul Mornon
#t2010
#cBioinformatics
#index2849652
#% 
#!
  
#*PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks.
#@Fei Li,Peng Li,Wenjian Xu,Yuxing Peng,Xiaochen Bo,Shengqi Wang
#t2010
#cBioinformatics
#index2849450
#% 
#!
  
#*SLiM on Diet: finding short linear motifs on domain interaction interfaces in Protein Data Bank.
#@Hugo Willy,Fushan Song,Zeyar Aung,See-Kiong Ng,Wing-Kin Sung
#t2010
#cBioinformatics
#index2849472
#% 
#!
  
#*Targeted interrogation of copy number variation using SCIMMkit.
#@Troy Zerr,Gregory M. Cooper,Evan E. Eichler,Deborah Nickerson
#t2010
#cBioinformatics
#index2849533
#% 
#!
  
#*Cross-species common regulatory network inference without requirement for prior gene affiliation.
#@Amin Moghaddas Gholami,Kurt Fellenberg
#t2010
#cBioinformatics
#index2849443
#% 
#!
  
#*Gene selection in microarray survival studies under possibly non-proportional hazards.
#@Daniela Dunkler,Michael Schemper,Georg Heinze
#t2010
#cBioinformatics
#index2849497
#% 
#!
  
#*Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways.
#@Naama Tepper,Tomer Shlomi
#t2010
#cBioinformatics
#index2849581
#% 
#!
  
#*How significant is a protein structure similarity with TM-score = 0.5?
#@Jinrui Xu,Yang Zhang
#t2010
#cBioinformatics
#index2849402
#% 
#!
  
#*Exploiting sequence similarity to validate the sensitivity of SNP arrays in detecting fine-scaled copy number variations.
#@Gerard Wong,Christopher Leckie,Kylie L. Gorringe,Izhak Haviv,Ian G. Campbell,Adam Kowalczyk
#t2010
#cBioinformatics
#index2849486
#% 
#!
  
#*Maximal conditional chi-square importance in random forests.
#@Minghui Wang,Xiang Chen,Heping Zhang
#t2010
#cBioinformatics
#index2849592
#% 
#!
  
#*A meta-analysis of two-dimensional electrophoresis pattern of the Parkinson's disease-related protein DJ-1.
#@Massimo Natale,Dario Bonino,Paolo Consoli,Tiziana Alberio,Rivka G. Ravid,Mauro Fasano,Enrico M. Bucci
#t2010
#cBioinformatics
#index2849465
#% 
#!
  
#*Next-generation bioinformatics: using many-core processor architecture to develop a web service for sequence alignment.
#@Sergio Gálvez,David Díaz,Pilar Hernández,Francisco J. Esteban,Juan Antonio Caballero,Gabriel Dorado
#t2010
#cBioinformatics
#index2849427
#% 
#!
  
#*BioNet: an R-Package for the functional analysis of biological networks.
#@Daniela Beisser,Gunnar W. Klau,Thomas Dandekar,Tobias Müller,Marcus T. Dittrich
#t2010
#cBioinformatics
#index2849603
#% 
#!
  
#*EBImage - an R package for image processing with applications to cellular phenotypes.
#@Grégoire Pau,Florian Fuchs,Oleg Sklyar,Michael Boutros,Wolfgang Huber
#t2010
#cBioinformatics
#index2849457
#% 
#!
  
#*power estimation in large-scale multiple testing problems.
#@Sonja Zehetmayer,Martin Posch
#t2010
#cBioinformatics
#index2849514
#% 
#!
  
#*cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data.
#@Fengfeng Zhou,Ying Xu
#t2010
#cBioinformatics
#index2849761
#% 
#!
  
#*Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood.
#@Miklós Csuös
#t2010
#cBioinformatics
#index2849775
#% 
#!
  
#*Ontogenomic study of the relationship between number of gene splice variants and GO categorization.
#@Ari B. Kahn,Barry Zeeberg,Michael C. Ryan,D. Curtis Jamison,David M. Rockoff,Yves Pommier,John N. Weinstein
#t2010
#cBioinformatics
#index2849842
#% 
#!
  
#*Bridges: a tool for identifying local similarities in long sequences.
#@Alexey S. Kondrashov,Raquel Assis
#t2010
#cBioinformatics
#index2849784
#% 
#!
  
#*A UIMA wrapper for the NCBO annotator.
#@Christophe Roeder,Clement Jonquet,Nigam H. Shah,William A. Baumgartner Jr.,Karin Verspoor,Lawrence Hunter
#t2010
#cBioinformatics
#index2849797
#% 
#!
  
#*A machine learning approach to predicting protein-ligand binding affinity with applications to molecular docking.
#@Pedro J. Ballester,John B. O. Mitchell
#t2010
#cBioinformatics
#index2849671
#% 
#!
  
#*Polynomial algebra of discrete models in systems biology.
#@Alan Veliz-Cuba,Abdul Salam Jarrah,Reinhard C. Laubenbacher
#t2010
#cBioinformatics
#index2849791
#% 
#!
  
#*CNAnova: a new approach for finding recurrent copy number abnormalities in cancer SNP microarray data.
#@Sergii Ivakhno,Simon Tavaré
#t2010
#cBioinformatics
#index2849676
#% 
#!
  
#*varLD: a program for quantifying variation in linkage disequilibrium patterns between populations.
#@Rick Twee-Hee Ong,Yik-Ying Teo
#t2010
#cBioinformatics
#index2849663
#% 
#!
  
#*Permutation importance: a corrected feature importance measure.
#@André Altmann,Laura Tolosi,Oliver Sander,Thomas Lengauer
#t2010
#cBioinformatics
#index2849685
#% 
#!
  
#*A signal-noise model for significance analysis of ChIP-seq with negative control.
#@Han Xu,Lusy Handoko,Xueliang Wei,Chaopeng Ye,Jianpeng Sheng,Chia-Lin Wei,Feng Lin,Wing-Kin Sung
#t2010
#cBioinformatics
#index2849681
#% 
#!
  
#*A parallel algorithm to compute chemical organizations in biological networks.
#@Florian Centler,Christoph Kaleta,Pietro Speroni di Fenizio,Peter Dittrich
#t2010
#cBioinformatics
#index2849750
#% 
#!
  
#*An integer programming formulation to identify the sparse network architecture governing differentiation of embryonic stem cells.
#@Ipsita Banerjee,Spandan Maiti,Natesh Parashurama,Martin L. Yarmush
#t2010
#cBioinformatics
#index2849658
#% 
#!
  
#*MISS: a non-linear methodology based on mutual information for genetic association studies in both population and sib-pairs analysis.
#@Helena Brunel,Joan-Josep Gallardo-Chacón,Alfonso Buil,Montserrat Vallverdú,José Manuel Soria,Pere Caminal,Alexandre Perera
#t2010
#cBioinformatics
#index2849737
#% 
#!
  
#*Fast integration of heterogeneous data sources for predicting gene function with limited annotation.
#@Sara Mostafavi,Quaid Morris
#t2010
#cBioinformatics
#index2849805
#% 
#!
  
#*Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud.
#@Paolo Di Tommaso,Miquel Orobitg,Fernando Guirado,Fernado Cores,Toni Espinosa,Cédric Notredame
#t2010
#cBioinformatics
#index2849798
#% 
#!
  
#*Characterization of the N-ATPase, a distinct, laterally transferred Na-translocating form of the bacterial F-type membrane ATPase.
#@Daria V. Dibrova,Michael Y. Galperin,Armen Y. Mulkidjanian
#t2010
#cBioinformatics
#index2849755
#% 
#!
  
#*A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.
#@Bobbie-Jo M. Webb-Robertson,William R. Cannon,Christopher S. Oehmen,Anuj R. Shah,Vidhya Gurumoorthi,Mary S. Lipton,Katrina M. Waters
#t2010
#cBioinformatics
#index2849812
#% 
#!
  
#*COMPASSS (COMplex PAttern of Sequence Search Software), a simple and effective tool for mining complex motifs in whole genomes.
#@Giuseppe Maccari,Federica Gemignani,Stefano Landi
#t2010
#cBioinformatics
#index2849828
#% 
#!
  
#*Structure-based variable selection for survival data.
#@Vincenzo Lagani,Ioannis Tsamardinos
#t2010
#cBioinformatics
#index2849767
#% 
#!
  
#*geWorkbench: an open source platform for integrative genomics.
#@Aris Floratos,Kenneth Smith,Zhou Ji,John Watkinson,Andrea Califano
#t2010
#cBioinformatics
#index2849836
#% 
#!
  
#*A Poisson model for random multigraphs.
#@John M. O. Ranola,Sangtae Ahn,Mary Sehl,Desmond J. Smith,Kenneth Lange
#t2010
#cBioinformatics
#index2849826
#% 
#!
  
#*Savant: genome browser for high-throughput sequencing data.
#@Marc Fiume,Vanessa Williams,Andrew Brook,Michael Brudno
#t2010
#cBioinformatics
#index2849785
#% 
#!
  
#*LCE: a link-based cluster ensemble method for improved gene expression data analysis.
#@Natthakan Iam-on,Tossapon Boongoen,Simon Garrett
#t2010
#cBioinformatics
#index2849841
#% 
#!
  
#*: new tools for investigating the phylogenetic signal in biological traits.
#@Thibaut Jombart,François Balloux,Stéphane Dray
#t2010
#cBioinformatics
#index2849794
#% 
#!
  
#*Reducing the algorithmic variability in transcriptome-based inference.
#@Salih Tuna,Mahesan Niranjan
#t2010
#cBioinformatics
#index2849673
#% 
#!
  
#*Applying the Naïve Bayes classifier with kernel density estimation to the prediction of protein-protein interaction sites.
#@Yoichi Murakami,Kenji Mizuguchi
#t2010
#cBioinformatics
#index2849769
#% 
#!
  
#*Over-optimism in bioinformatics: an illustration.
#@Monika Jelizarow,Vincent Guillemot,Arthur Tenenhaus,Korbinian Strimmer,Anne-Laure Boulesteix
#t2010
#cBioinformatics
#index2849741
#% 
#!
  
#*A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals.
#@Taane G. Clark,Susana G. Campino,Elisa Anastasi,Sarah Auburn,Yik Y. Teo,Kerrin S. Small,Kirk A. Rockett,Dominic Kwiatkowski,Christopher C. Holmes
#t2010
#cBioinformatics
#index2849849
#% 
#!
  
#*Interactive software tool to comprehend the calculation of optimal sequence alignments with dynamic programming.
#@Ignacio L. Ibarra,Francisco Melo
#t2010
#cBioinformatics
#index2849776
#% 
#!
  
#*MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.
#@Yongchao Liu,Bertil Schmidt,Douglas L. Maskell
#t2010
#cBioinformatics
#index2849740
#% 
#!
  
#*DETECT - a Density Estimation Tool for Enzyme ClassificaTion and its application to .
#@Stacy S. Hung,James Wasmuth,Christopher Sanford,John Parkinson
#t2010
#cBioinformatics
#index2849813
#% 
#!
  
#*Streamlining the construction of large-scale dynamic models using generic kinetic equations.
#@Delali A. Adiamah,Julia Handl,Jean-Marc Schwartz
#t2010
#cBioinformatics
#index2849684
#% 
#!
  
#*Computing biological functions using BioPsi, a formal description of biological processes based on elementary bricks of actions.
#@Sabine Pérès,Liza Felicori,Stéphanie Rialle,Elodie Jobard,Franck Molina
#t2010
#cBioinformatics
#index2849816
#% 
#!
  
#*Testing multiple gene interactions by the ordered combinatorial partitioning method in case-control studies.
#@Xing Hua,Han Zhang,Hong Zhang,Yaning Yang,Anthony Y. C. Kuk
#t2010
#cBioinformatics
#index2849831
#% 
#!
  
#*Evoker: a visualization tool for genotype intensity data.
#@James A. Morris,Joshua C. Randall,Julian B. Maller,Jeffrey C. Barrett
#t2010
#cBioinformatics
#index2849742
#% 
#!
  
#*PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations.
#@Joshua C. Denny,Marylyn D. Ritchie,Melissa A. Basford,Jill M. Pulley,Lisa Bastarache,Kristin Brown-Gentry,Deede Wang,Dan R. Masys,Dan M. Roden,Dana C. Crawford
#t2010
#cBioinformatics
#index2849686
#% 
#!
  
#*SLIMS - a user-friendly sample operations and inventory management system for genotyping labs.
#@Thea Van Rossum,Ben W. Tripp,Denise Daley
#t2010
#cBioinformatics
#index2849758
#% 
#!
  
#*Efficient learning of microbial genotype-phenotype association rules.
#@Norman J. MacDonald,Robert G. Beiko
#t2010
#cBioinformatics
#index2849777
#% 
#!
  
#*Learning transcriptional networks from the integration of ChIP-chip and expression data in a non-parametric model.
#@Ahrim Youn,David J. Reiss,Werner Stuetzle
#t2010
#cBioinformatics
#index2849749
#% 
#!
  
#*Pathway discovery in metabolic networks by subgraph extraction.
#@Karoline Faust,Pierre Dupont,Jérôme Callut,Jacques van Helden
#t2010
#cBioinformatics
#index2849666
#% 
#!
  
#*Rapid match-searching for gene silencing assessment.
#@Mark E. T. Horn,Peter M. Waterhouse
#t2010
#cBioinformatics
#index2849768
#% 
#!
  
#*Finding metabolic pathways using atom tracking.
#@Allison P. Heath,George N. Bennett,Lydia E. Kavraki
#t2010
#cBioinformatics
#index2849833
#% 
#!
  
#*DA 1.0: parameter estimation of biological pathways using data assimilation approach.
#@Chuan Hock Koh,Masao Nagasaki,Ayumu Saito,Limsoon Wong,Satoru Miyano
#t2010
#cBioinformatics
#index2849844
#% 
#!
  
#*A probabilistic framework for aligning paired-end RNA-seq data.
#@Yin Hu,Kai Wang,Xiaping He,Derek Y. Chiang,Jan F. Prins,Jinze Liu
#t2010
#cBioinformatics
#index2849823
#% 
#!
  
#*A hidden Markov support vector machine framework incorporating profile geometry learning for identifying microbial RNA in tiling array data.
#@Wen-Han Yu,Hedda Høvik,Tsute Chen
#t2010
#cBioinformatics
#index2849683
#% 
#!
  
#*ABC-SysBio - approximate Bayesian computation in Python with GPU support.
#@Juliane Liepe,Chris Barnes,Erika Cule,Kamil Erguler,Paul D. W. Kirk,Tina Toni,Michael P. H. Stumpf
#t2010
#cBioinformatics
#index2849793
#% 
#!
  
#*Supersplat - spliced RNA-seq alignment.
#@Douglas W. Bryant Jr.,Rongkun Shen,Henry D. Priest,Weng-Keen Wong,Todd C. Mockler
#t2010
#cBioinformatics
#index2849804
#% 
#!
  
#*Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology.
#@Thomas D. Otto,Mandy Sanders,Matthew Berriman,Chris Newbold
#t2010
#cBioinformatics
#index2849796
#% 
#!
  
#*Causal relationship inference for a large-scale cellular network.
#@Tong Zhou,Ya-Li Wang
#t2010
#cBioinformatics
#index2849739
#% 
#!
  
#*Cassis: detection of genomic rearrangement breakpoints.
#@Christian Baudet,Claire Lemaitre,Zanoni Dias,Christian Gautier,Eric Tannier,Marie-France Sagot
#t2010
#cBioinformatics
#index2849757
#% 
#!
  
#*Inference of combinatorial Boolean rules of synergistic gene sets from cancer microarray datasets.
#@Inho Park,Kwang H. Lee,Doheon Lee
#t2010
#cBioinformatics
#index2849803
#% 
#!
  
#*Modeling RNA loops using sequence homology and geometric constraints.
#@Christian Schudoma,Patrick May,Dirk Walther
#t2010
#cBioinformatics
#index2849732
#% 
#!
  
#*TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.
#@Eric Bonnet,Ying He,Kenny Billiau,Yves Van de Peer
#t2010
#cBioinformatics
#index2849786
#% 
#!
  
#*Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels.
#@Fabrice Jossinet,Thomas E. Ludwig,Eric Westhof
#t2010
#cBioinformatics
#index2849814
#% 
#!
  
#*Manipulation of FASTQ data with Galaxy.
#@Daniel Blankenberg,Assaf Gordon,Gregory Von Kuster,Nathan Coraor,James Taylor,Anton Nekrutenko
#t2010
#cBioinformatics
#index2849778
#% 
#!
  
#*EpiTOP - a proteochemometric tool for MHC class II binding prediction.
#@Ivan Dimitrov,Panayot Garnev,Darren R. Flower,Irini A. Doytchinova
#t2010
#cBioinformatics
#index2849760
#% 
#!
  
#*Modeling and analyzing complex biological networks incooperating experimental information on both network topology and stable states.
#@Yi Ming Zou
#t2010
#cBioinformatics
#index2849829
#% 
#!
  
#*Global analysis of microarray data reveals intrinsic properties in gene expression and tissue selectivity.
#@Changsik Kim,Jiwon Choi,Hyunjin Park,Yunsun Park,Jungsun Park,Taesung Park,Kwanghui Cho,Young Yang,Sukjoon Yoon
#t2010
#cBioinformatics
#index2849734
#% 
#!
  
#*MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets.
#@Yitzhak Friedman,Guy Naamati,Michal Linial
#t2010
#cBioinformatics
#index2849801
#% 
#!
  
#*Integrative mixture of experts to combine clinical factors and gene markers.
#@Kim-Anh Lê Cao,Emmanuelle Meugnier,Geoffrey J. McLachlan
#t2010
#cBioinformatics
#index2849661
#% 
#!
  
#*A highly accurate statistical approach for the prediction of transmembrane beta-barrels.
#@Thomas C. Freeman Jr.,William C. Wimley
#t2010
#cBioinformatics
#index2849787
#% 
#!
  
#*TiSGeD: a database for tissue-specific genes.
#@Sheng-Jian Xiao,Chi Zhang,Quan Zou,Zhi-Liang Ji
#t2010
#cBioinformatics
#index2849675
#% 
#!
  
#*Deciphering subcellular processes in live imaging datasets via dynamic probabilistic networks.
#@Kresimir Letinic,Rafael Sebastián,Andrew Barthel,Derek Toomre
#t2010
#cBioinformatics
#index2849815
#% 
#!
  
#*MODEVO: exploring modularity and evolution of protein interaction networks.
#@Michal Wozniak,Jerzy Tiuryn,Janusz Dutkowski
#t2010
#cBioinformatics
#index2849810
#% 
#!
  
#*Prediction of protein-RNA binding sites by a random forest method with combined features.
#@Zhi-Ping Liu,Ling-Yun Wu,Yong Wang,Xiang-Sun Zhang,Luonan Chen
#t2010
#cBioinformatics
#index2849824
#% 
#!
  
#*Learning combinatorial transcriptional dynamics from gene expression data.
#@Manfred Opper,Guido Sanguinetti
#t2010
#cBioinformatics
#index2849751
#% 
#!
  
#*VSDocker: a tool for parallel high-throughput virtual screening using AutoDock on Windows-based computer clusters.
#@Nikita D. Prakhov,Alexander L. Chernorudskiy,Murat R. Gainullin
#t2010
#cBioinformatics
#index2849670
#% 
#!
  
#*Pathgroups, a dynamic data structure for genome reconstruction problems.
#@Chunfang Zheng
#t2010
#cBioinformatics
#index2849774
#% 
#!
  
#*A new data mining approach for profiling and categorizing kinetic patterns of metabolic biomarkers after myocardial injury.
#@Christian Baumgartner,Gregory D. Lewis,Michael Netzer,Bernhard Pfeifer,Robert E. Gerszten
#t2010
#cBioinformatics
#index2849838
#% 
#!
  
#*On safari to Random Jungle: a fast implementation of Random Forests for high-dimensional data.
#@Daniel F. Schwarz,Inke R. König,Andreas Ziegler
#t2010
#cBioinformatics
#index2849747
#% 
#!
  
#*HangOut: generating clean PSI-BLAST profiles for domains with long insertions.
#@Bong-Hyun Kim,Qian Cong,Nick V. Grishin
#t2010
#cBioinformatics
#index2849788
#% 
#!
  
#*Uniformly curated signaling pathways reveal tissue-specific cross-talks and support drug target discovery.
#@Tamás Korcsmáros,Illés J. Farkas,Mate S. Szalay,Petra Rovó,Dávid Fazekas,Zoltán Spiró,Csaba Böde,Katalin Lenti,Tibor Vellai,Peter Csermely
#t2010
#cBioinformatics
#index2849795
#% 
#!
  
#*ArchSchema: a tool for interactive graphing of related Pfam domain architectures.
#@Asif U. Tamuri,Roman A. Laskowski
#t2010
#cBioinformatics
#index2849678
#% 
#!
  
#*DARNED: a DAtabase of RNa EDiting in humans.
#@Anmol Kiran,Pavel V. Baranov
#t2010
#cBioinformatics
#index2849843
#% 
#!
  
#*Revealing differences in gene network inference algorithms on the network level by ensemble methods.
#@Gökmen Altay,Frank Emmert-Streib
#t2010
#cBioinformatics
#index2849779
#% 
#!
  
#*: an R package for the analysis of enrichment-based epigenomic data.
#@Aaron L. Statham,Dario Strbenac,Marcel W. Coolen,Clare Stirzaker,Susan J. Clark,Mark D. Robinson
#t2010
#cBioinformatics
#index2849759
#% 
#!
  
#*Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation.
#@Wolfram Liebermeister,Jannis Uhlendorf,Edda Klipp
#t2010
#cBioinformatics
#index2849821
#% 
#!
  
#*COMA server for protein distant homology search.
#@Mindaugas Margelevicius,Mindaugas Laganeckas,Ceslovas Venclovas
#t2010
#cBioinformatics
#index2849748
#% 
#!
  
#*PepC: proteomics software for identifying differentially expressed proteins based on spectral counting.
#@N. L. Heinecke,B. S. Pratt,T. Vaisar,L. Becker
#t2010
#cBioinformatics
#index2849752
#% 
#!
  
#*FuncBase : a resource for quantitative gene function annotation.
#@John E. Beaver,Murat Tasan,Francis D. Gibbons,Weidong Tian,Timothy R. Hughes,Frederick P. Roth
#t2010
#cBioinformatics
#index2849780
#% 
#!
  
#*Identification of genetic network dynamics with unate structure.
#@Riccardo Porreca,Eugenio Cinquemani,John Lygeros,Giancarlo Ferrari-Trecate
#t2010
#cBioinformatics
#index2849664
#% 
#!
  
#*Exploring the potential of template-based modelling.
#@Braddon K. Lance,Charlotte M. Deane,Graham R. Wood
#t2010
#cBioinformatics
#index2849773
#% 
#!
  
#*Classification of DNA sequences using Bloom filters.
#@Henrik Stranneheim,Max Käller,Tobias Allander,Björn Andersson,Lars Arvestad,Joakim Lundeberg
#t2010
#cBioinformatics
#index2849733
#% 
#!
  
#*Molecular signatures-based prediction of enzyme promiscuity.
#@Pablo Carbonell,Jean-Loup Faulon
#t2010
#cBioinformatics
#index2849809
#% 
#!
  
#*A computational genomics pipeline for prokaryotic sequencing projects.
#@Andrey Kislyuk,Lee S. Katz,Sonia Agrawal,Matthew S. Hagen,Andrew B. Conley,Pushkala Jayaraman,Viswateja Nelakuditi,Jay C. Humphrey,Scott A. Sammons,Dhwani Govil,Raydel D. Mair,Kathleen M. Tatti,Maria L. Tondella,Brian H. Harcourt,Leonard W. Mayer,I. King Jordan
#t2010
#cBioinformatics
#index2849802
#% 
#!
  
#*Correction of sequencing errors in a mixed set of reads.
#@Leena Salmela
#t2010
#cBioinformatics
#index2849662
#% 
#!
  
#*A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches.
#@David M. Kristensen,Lavanya Kannan,Michael K. Coleman,Yuri I. Wolf,Alexander Sorokin,Eugene V. Koonin,Arcady R. Mushegian
#t2010
#cBioinformatics
#index2849818
#% 
#!
  
#*SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data.
#@Bruno Zeitouni,Valentina Boeva,Isabelle Janoueix-Lerosey,Sophie Loeillet,Patricia Legoix-né,Alain Nicolas,Olivier Delattre,Emmanuel Barillot
#t2010
#cBioinformatics
#index2849846
#% 
#!
  
#*Discover regulatory DNA elements using chromatin signatures and artificial neural network.
#@Hiram A. Firpi,Duygu Ucar,Kai Tan
#t2010
#cBioinformatics
#index2849832
#% 
#!
  
#*PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.
#@Nancy Y. Yu,James R. Wagner,Matthew R. Laird,Gabor Melli,Sébastien Rey,Raymond Lo,Phuong Dao,Süleyman Cenk Sahinalp,Martin Ester,Leonard J. Foster,Fiona S. L. Brinkman
#t2010
#cBioinformatics
#index2849835
#% 
#!
  
#*Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy.
#@Gilles Parmentier,Frederic B. Bastian,Marc Robinson-Rechavi
#t2010
#cBioinformatics
#index2849765
#% 
#!
  
#*A CROC stronger than ROC: measuring, visualizing and optimizing early retrieval.
#@Sanjay Joshua Swamidass,Chloé-Agathe Azencott,Kenny Daily,Pierre Baldi
#t2010
#cBioinformatics
#index2849667
#% 
#!
  
#*Homology of SMP domains to the TULIP superfamily of lipid-binding proteins provides a structural basis for lipid exchange between ER and mitochondria.
#@Klaus O. Kopec,Vikram Alva,Andrei N. Lupas
#t2010
#cBioinformatics
#index2849817
#% 
#!
  
#*Machine learning based prediction for peptide drift times in ion mobility spectrometry.
#@Anuj R. Shah,Khushbu Agarwal,Erin S. Baker,Mudita Singhal,Anoop M. Mayampurath,Yehia M. Ibrahim,Lars J. Kangas,Matthew E. Monroe,Rui Zhao,Mikhail E. Belov,Gordon A. Anderson,Richard D. Smith
#t2010
#cBioinformatics
#index2849762
#% 
#!
  
#*Arcadia: a visualization tool for metabolic pathways.
#@Alice Villéger,Stephen Pettifer,Douglas B. Kell
#t2010
#cBioinformatics
#index2849690
#% 
#!
  
#*Genome-wide inferring gene-phenotype relationship by walking on the heterogeneous network.
#@Yongjin Li,Jagdish Chandra Patra
#t2010
#cBioinformatics
#index2849672
#% 
#!
  
#*The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell.
#@Thomas Junier,Evgeny M. Zdobnov
#t2010
#cBioinformatics
#index2849753
#% 
#!
  
#*ViewDock TDW: high-throughput visualization of virtual screening results.
#@Christopher D. Lau,Marshall J. Levesque,Shu Chien,Susumu Date,Jason H. Haga
#t2010
#cBioinformatics
#index2849736
#% 
#!
  
#*Picante: R tools for integrating phylogenies and ecology.
#@Steven W. Kembel,Peter D. Cowan,Matthew R. Helmus,William K. Cornwell,Helene Morlon,David D. Ackerly,Simon P. Blomberg,Campbell O. Webb
#t2010
#cBioinformatics
#index2849691
#% 
#!
  
#*EuGène-maize: a web site for maize gene prediction.
#@Pierre Montalent,Johann Joets
#t2010
#cBioinformatics
#index2849659
#% 
#!
  
#*CisGenome Browser: a flexible tool for genomic data visualization.
#@Hui Jiang,Fan Wang,Nigel P. Dyer,Wing Hung Wong
#t2010
#cBioinformatics
#index2849781
#% 
#!
  
#*Predicting post-translational lysine acetylation using support vector machines.
#@Florian Gnad,Shubin Ren,Chunaram Choudhary,Jürgen Cox,Matthias Mann
#t2010
#cBioinformatics
#index2849745
#% 
#!
  
#*Multilevel support vector regression analysis to identify condition-specific regulatory networks.
#@Li Chen,Jianhua Xuan,Rebecca B. Riggins,Yue Wang,Eric P. Hoffman,Robert Clarke
#t2010
#cBioinformatics
#index2849677
#% 
#!
  
#*An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System.
#@Brian D. Ondov,Charles Cochran,Mark Landers,Gavin D. Meredith,Miroslav Dudas,Nicholas H. Bergman
#t2010
#cBioinformatics
#index2849790
#% 
#!
  
#*Gap5 - editing the billion fragment sequence assembly.
#@James K. Bonfield,Andrew Whitwham
#t2010
#cBioinformatics
#index2849822
#% 
#!
  
#*Large-scale benchmark of Endeavour using MetaCore maps.
#@Sven Schuierer,Léon-Charles Tranchevent,Uwe Dengler,Yves Moreau
#t2010
#cBioinformatics
#index2849766
#% 
#!
  
#*Single feature polymorphism detection using recombinant inbred line microarray expression data.
#@Xinping Cui,Na You,Thomas Girke,Richard Michelmore,Allen Van Deynze
#t2010
#cBioinformatics
#index2849772
#% 
#!
  
#*Studying the co-evolution of protein families with the Mirrortree web server.
#@David Ochoa,Florencio Pazos
#t2010
#cBioinformatics
#index2849689
#% 
#!
  
#*Semantic integration of data on transcriptional regulation.
#@Michael Baitaluk,Julia V. Ponomarenko
#t2010
#cBioinformatics
#index2849845
#% 
#!
  
#*A quality control algorithm for filtering SNPs in genome-wide association studies.
#@Monnat Pongpanich,Patrick F. Sullivan,Jung-Ying Tzeng
#t2010
#cBioinformatics
#index2849840
#% 
#!
  
#*Phenoclustering: online mining of cross-species phenotypes.
#@Philip Groth,Ivan Kalev,Ivaylo Kirov,Borislav Traikov,Ulf Leser,Bertram Weiss
#t2010
#cBioinformatics
#index2849763
#% 
#!
  
#*LOX: inferring Level Of eXpression from diverse methods of census sequencing.
#@Zhang Zhang,Francesc López-Giráldez,Jeffrey P. Townsend
#t2010
#cBioinformatics
#index2849735
#% 
#!
  
#*A CoD-based reduction algorithm for designing stationary control policies on Boolean networks.
#@Noushin Ghaffari,Ivan Ivanov,Xiaoning Qian,Edward R. Dougherty
#t2010
#cBioinformatics
#index2849807
#% 
#!
  
#*The Genomedata format for storing large-scale functional genomics data.
#@Michael M. Hoffman,Orion J. Buske,William Stafford Noble
#t2010
#cBioinformatics
#index2849680
#% 
#!
  
#*Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases.
#@Dong Wang,Juan Wang,Ming Lu,Fei Song,Qinghua Cui
#t2010
#cBioinformatics
#index2849830
#% 
#!
  
#*PESDserv: a server for high-throughput comparison of protein binding site surfaces.
#@Sourav Das,Michael P. Krein,Curt M. Breneman
#t2010
#cBioinformatics
#index2849754
#% 
#!
  
#*NetRaVE: constructing dependency networks using sparse linear regression.
#@A. Phatak,H. Kiiveri,L. H. Clemmensen,W. J. Wilson
#t2010
#cBioinformatics
#index2849746
#% 
#!
  
#*CHOYCE: a web server for constrained homology modelling with cryoEM maps.
#@Reda Rawi,Lee Whitmore,Maya Topf
#t2010
#cBioinformatics
#index2849789
#% 
#!
  
#*Structure-based prediction of DNA-binding proteins by structural alignment and a volume-fraction corrected DFIRE-based energy function.
#@Huiying Zhao,Yuedong Yang,Yaoqi Zhou
#t2010
#cBioinformatics
#index2849782
#% 
#!
  
#*A new method for designing degenerate primers and its use in the identification of sequences in showing similarity to apomixis-associated genes.
#@Eduardo Gorrón,Fausto Rodríguez,Diana Bernal,Luis Miguel Rodriguez-Rojas,Adriana Bernal,Silvia Restrepo,Joe Tohme
#t2010
#cBioinformatics
#index2849771
#% 
#!
  
#*FastEpistasis: a high performance computing solution for quantitative trait epistasis.
#@Thierry Schüpbach,Ioannis Xenarios,Sven Bergmann,Karen Kapur
#t2010
#cBioinformatics
#index2849669
#% 
#!
  
#*SensSB: a software toolbox for the development and sensitivity analysis of systems biology models.
#@Maria Rodriguez-Fernandez,Julio R. Banga
#t2010
#cBioinformatics
#index2849827
#% 
#!
  
#*DendroPy: a Python library for phylogenetic computing.
#@Jeet Sukumaran,Mark T. Holder
#t2010
#cBioinformatics
#index2849848
#% 
#!
  
#*ExpressionView - an interactive viewer for modules identified in gene expression data.
#@Andreas Lüscher,Gábor Csárdi,Aitana Morton de Lachapelle,Zoltan Kutalik,Bastian Peter,Sven Bergmann
#t2010
#cBioinformatics
#index2849808
#% 
#!
  
#*Integrative platform to translate gene sets to networks.
#@Marko Laakso,Sampsa Hautaniemi
#t2010
#cBioinformatics
#index2849799
#% 
#!
  
#*PathWave: discovering patterns of differentially regulated enzymes in metabolic pathways.
#@Gunnar Schramm,Stefan Wiesberg,Nicolle Diessl,Anna-Lena Kranz,Vitalia Sagulenko,Marcus Oswald,Gerhard Reinelt,Frank Westermann,Roland Eils,Rainer König
#t2010
#cBioinformatics
#index2849674
#% 
#!
  
#*Going from where to why - interpretable prediction of protein subcellular localization.
#@Sebastian Briesemeister,Jörg Rahnenführer,Oliver Kohlbacher
#t2010
#cBioinformatics
#index2849660
#% 
#!
  
#*Identifying duplicate content using statistically improbable phrases.
#@Mounir Errami,Zhaohui Sun,Angela C. George,Tara C. Long,Michael A. Skinner,Jonathan D. Wren,Harold R. Garner
#t2010
#cBioinformatics
#index2849688
#% 
#!
  
#*Automated analysis of protein subcellular location in time series images.
#@Yanhua Hu,Elvira Osuna-Highley,Juchang Hua,Theodore Scott Nowicki,Robert Stolz,Camille McKayle,Robert F. Murphy
#t2010
#cBioinformatics
#index2849819
#% 
#!
  
#*Localized motif discovery in gene regulatory sequences.
#@Vipin Narang,Ankush Mittal,Wing-Kin Sung
#t2010
#cBioinformatics
#index2849679
#% 
#!
  
#*UMA and MABP domains throw light on receptor endocytosis and selection of endosomal cargoes.
#@Robson Francisco de Souza,L. Aravind
#t2010
#cBioinformatics
#index2849800
#% 
#!
  
#*: a coalescent simulation program including recombination, demographic structure and selection at a single locus.
#@Gregory Ewing,Joachim Hermisson
#t2010
#cBioinformatics
#index2849837
#% 
#!
  
#*Building a high-quality sense inventory for improved abbreviation disambiguation.
#@Naoaki Okazaki,Sophia Ananiadou,Jun-ichi Tsujii
#t2010
#cBioinformatics
#index2849665
#% 
#!
  
#*FABIA: factor analysis for bicluster acquisition.
#@Sepp Hochreiter,Ulrich Bodenhofer,Martin Heusel,Andreas Mayr,Andreas Mitterecker,Adetayo Kasim,Tatsiana Khamiakova,Suzy Van Sanden,Dan Lin,Willem Talloen,Luc Bijnens,Hinrich W. H. Göhlmann,Ziv Shkedy,Djork-Arné Clevert
#t2010
#cBioinformatics
#index2849743
#% 
#!
  
#*Genome-wide synteny through highly sensitive sequence alignment: .
#@Manfred G. Grabherr,Pamela Russell,Miriah Meyer,Evan Mauceli,Jessica Alföldi,Federica Di Palma,Kerstin Lindblad-Toh
#t2010
#cBioinformatics
#index2849682
#% 
#!
  
#*Prediction of protease substrates using sequence and structure features.
#@David T. Barkan,Daniel R. Hostetter,Sami Mahrus,Ursula Pieper,James A. Wells,Charles S. Craik,Andrej Sali
#t2010
#cBioinformatics
#index2849764
#% 
#!
  
#*Deuteration distribution estimation with improved sequence coverage for HX/MS experiments.
#@Xinghua Lou,Marc Kirchner,Bernhard Y. Renard,Ullrich Köthe,Sebastian Boppel,Christian Graf,Chung-Tien Lee,Judith A. J. Steen,Hanno Steen,Matthias P. Mayer,Fred A. Hamprecht
#t2010
#cBioinformatics
#index2849834
#% 
#!
  
#*A more precise characterization of chaperonin substrates.
#@Emanuele Raineri,Paolo Ribeca,Luis Serrano,Tobias Maier
#t2010
#cBioinformatics
#index2849839
#% 
#!
  
#*FastMEDUSA: a parallelized tool to infer gene regulatory networks.
#@Serdar Bozdag,Aiguo Li,Stefan Wuchty,Howard A. Fine
#t2010
#cBioinformatics
#index2849783
#% 
#!
  
#*Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor.
#@William M. McLaren,Bethan Pritchard,Daniel Rios,Yuan Chen,Paul Flicek,Fiona Cunningham
#t2010
#cBioinformatics
#index2849847
#% 
#!
  
#*ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking.
#@Matthew D. Wilkerson,D. Neil Hayes
#t2010
#cBioinformatics
#index2849738
#% 
#!
  
#*Threshold Average Precision (TAP-): a measure of retrieval designed for bioinformatics.
#@Hyrum D. Carroll,Maricel G. Kann,Sergey Sheetlin,John L. Spouge
#t2010
#cBioinformatics
#index2849744
#% 
#!
  
#*Supervised normalization of microarrays.
#@Brigham H. Mecham,Peter S. Nelson,John D. Storey
#t2010
#cBioinformatics
#index2849687
#% 
#!
  
#*Parallelization of the MAFFT multiple sequence alignment program.
#@Kazutaka Katoh,Hiroyuki Toh
#t2010
#cBioinformatics
#index2849811
#% 
#!
  
#*Ligand-binding site prediction of proteins based on known fragment-fragment interactions.
#@Kota Kasahara,Kengo Kinoshita,Toshihisa Takagi
#t2010
#cBioinformatics
#index2849806
#% 
#!
  
#*Ergatis: a web interface and scalable software system for bioinformatics workflows.
#@Joshua Orvis,Jonathan Crabtree,Kevin Galens,Aaron Gussman,Jason M. Inman,Eduardo Lee,Sreenath Nampally,David Riley,Jaideep P. Sundaram,Victor Felix,Brett Whitty,Anup Mahurkar,Jennifer Wortman,Owen White,Samuel V. Angiuoli
#t2010
#cBioinformatics
#index2849770
#% 
#!
  
#*ACNE: a summarization method to estimate allele-specific copy numbers for Affymetrix SNP arrays.
#@Maria Ortiz-Estevez,Henrik Bengtsson,Angel Rubio
#t2010
#cBioinformatics
#index2849825
#% 
#!
  
#*Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease.
#@Fuxiao Xin,Steven Myers,Yong Fuga Li,David N. Cooper,Sean D. Mooney,Predrag Radivojac
#t2010
#cBioinformatics
#index2849756
#% 
#!
  
#*CplexA: a package to study macromolecular-assembly control of gene expression.
#@Jose M. G. Vilar,Leonor Saiz
#t2010
#cBioinformatics
#index2849792
#% 
#!
  
#*: balancing sequence and structural information in protein functional mapping.
#@Daron M. Standley,Reiko Yamashita,Akira R. Kinjo,Hiroyuki Toh,Haruki Nakamura
#t2010
#cBioinformatics
#index2849668
#% 
#!
  
#*GPCR-OKB: the G Protein Coupled Receptor Oligomer Knowledge Base.
#@George Khelashvili,Kevin C. Dorff,Jufang Shan,Marta Camacho-Artacho,Lucy Skrabanek,Bas Vroling,Michel Bouvier,Lakshmi Devi,Susan R. George,Jonathan A. Javitch,Martin J. Lohse,Graeme Milligan,Richard R. Neubig,Krzysztof Palczewski,Marc Parmentier,Jean-Philippe Pin,Gerrit Vriend,Fabien Campagne,Marta Filizola
#t2010
#cBioinformatics
#index2849820
#% 
#!
  
#*The Chemical Translation Service - a web-based tool to improve standardization of metabolomic reports.
#@Gert Wohlgemuth,Pradeep Kumar Haldiya,Egon L. Willighagen,Tobias Kind,Oliver Fiehn
#t2010
#cBioinformatics
#index2915971
#% 
#!
  
#*Temporal waves of coherent gene expression during embryogenesis.
#@Ilya Papatsenko,Mike Levine,Dmitri A. Papatsenko
#t2010
#cBioinformatics
#index2916039
#% 
#!
  
#*OWL2Perl: creating Perl modules from OWL class definitions.
#@Edward A. Kawas,Mark D. Wilkinson
#t2010
#cBioinformatics
#index2916119
#% 
#!
  
#*Discriminative and informative features for biomolecular text mining with ensemble feature selection.
#@Sofie Van Landeghem,Thomas Abeel,Yvan Saeys,Yves Van de Peer
#t2010
#cBioinformatics
#index2916032
#% 
#!
  
#*Integrative classification and analysis of multiple arrayCGH datasets with probe alignment.
#@Ze Tian,Rui Kuang
#t2010
#cBioinformatics
#index2916025
#% 
#!
  
#*Identification of protein binding surfaces using surface triplet propensities.
#@Wissam Mehio,Graham J. L. Kemp,Paul Taylor,Malcolm D. Walkinshaw
#t2010
#cBioinformatics
#index2916072
#% 
#!
  
#*MOBI: a web server to define and visualize structural mobility in NMR protein ensembles.
#@Alberto J. M. Martin,Ian Walsh,Silvio C. E. Tosatto
#t2010
#cBioinformatics
#index2916136
#% 
#!
  
#*A fast algorithm for exact sequence search in biological sequences using polyphase decomposition.
#@Abhilash Srikantha,Ajit S. Bopardikar,Kalyan Kumar Kaipa,Parthasarathy Venkataraman,Kyusang Lee,TaeJin Ahn,Rangavittal Narayanan
#t2010
#cBioinformatics
#index2916007
#% 
#!
  
#*Reptile: representative tiling for short read error correction.
#@Xiao Yang,Karin S. Dorman,Srinivas Aluru
#t2010
#cBioinformatics
#index2916046
#% 
#!
  
#*BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks.
#@Stéphanie Rialle,Liza Felicori,Camila Dias-Lopes,Sabine Pérès,Sanaâ El Atia,Alain R. Thierry,Patrick Amar,Franck Molina
#t2010
#cBioinformatics
#index2916063
#% 
#!
  
#*A fast and robust statistical test based on likelihood ratio with Bartlett correction to identify Granger causality between gene sets.
#@André Fujita,Kaname Kojima,Alexandre G. Patriota,João Ricardo Sato,Patricia Severino,Satoru Miyano
#t2010
#cBioinformatics
#index2915954
#% 
#!
  
#*DRIMM-Synteny: decomposing genomes into evolutionary conserved segments.
#@Son K. Pham,Pavel A. Pevzner
#t2010
#cBioinformatics
#index2916053
#% 
#!
  
#*Circoletto: visualizing sequence similarity with Circos.
#@Nikos Darzentas
#t2010
#cBioinformatics
#index2915972
#% 
#!
  
#*ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.
#@Philippe Rocca-Serra,Marco Brandizi,Eamonn Maguire,Nataliya Sklyar,Chris F. Taylor,Kimberly Begley,Dawn Field,Stephen C. Harris,Winston Hide,Oliver Hofmann,Steffen Neumann,Peter Sterk,Weida Tong,Susanna-Assunta Sansone
#t2010
#cBioinformatics
#index2915979
#% 
#!
  
#*The CoFactor database: organic cofactors in enzyme catalysis.
#@Julia D. Fischer,Gemma L. Holliday,Janet M. Thornton
#t2010
#cBioinformatics
#index2915996
#% 
#!
  
#*Investigating the correlations among the chemical structures, bioactivity profiles and molecular targets of small molecules.
#@Tiejun Cheng,Yanli Wang,Stephen H. Bryant
#t2010
#cBioinformatics
#index2915953
#% 
#!
  
#*Graph-based Word Sense Disambiguation of biomedical documents.
#@Eneko Agirre,Aitor Soroa,Mark Stevenson
#t2010
#cBioinformatics
#index2916082
#% 
#!
  
#*A statistical framework for Illumina DNA methylation arrays.
#@Pei Fen Kuan,Sijian Wang,Xin Zhou,Haitao Chu
#t2010
#cBioinformatics
#index2916100
#% 
#!
  
#*Annotare - a tool for annotating high-throughput biomedical investigations and resulting data.
#@Ravi Shankar,Helen E. Parkinson,Tony Burdett,Emma Hastings,Junmin Liu,Michael Miller,Rashmi Srinivasa,Joseph White,Alvis Brazma,Gavin Sherlock,Christian J. Stoeckert Jr.,Catherine A. Ball
#t2010
#cBioinformatics
#index2916010
#% 
#!
  
#*MEDELLER: homology-based coordinate generation for membrane proteins.
#@Sebastian Kelm,Jiye Shi,Charlotte M. Deane
#t2010
#cBioinformatics
#index2915935
#% 
#!
  
#*GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop.
#@J. Montojo,K. Zuberi,H. Rodriguez,F. Kazi,G. Wright,S. L. Donaldson,Q. Morris,G. D. Bader
#t2010
#cBioinformatics
#index2915990
#% 
#!
  
#*2Struc: the secondary structure server.
#@D. P. Klose,B. A. Wallace,Robert W. Janes
#t2010
#cBioinformatics
#index2916017
#% 
#!
  
#*A novel approach for determining environment-specific protein costs: the case of .
#@Max Sajitz-Hermstein,Zoran Nikoloski
#t2010
#cBioinformatics
#index2916135
#% 
#!
  
#*Click-words: learning to predict document keywords from a user perspective.
#@Rezarta Islamaj Dogan,Zhiyong Lu
#t2010
#cBioinformatics
#index2916003
#% 
#!
  
#*Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data.
#@Eric Bonnet,Tom Michoel,Yves Van de Peer
#t2010
#cBioinformatics
#index2915980
#% 
#!
  
#*MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data.
#@Anthony Mathelier,Alessandra Carbone
#t2010
#cBioinformatics
#index2916045
#% 
#!
  
#*ANAIS: Analysis of NimbleGen Arrays Interface.
#@Adeline Simon,Eric Biot
#t2010
#cBioinformatics
#index2916128
#% 
#!
  
#*How threshold behaviour affects the use of subgraphs for network comparison.
#@Tiago Rito,Zi Wang,Charlotte M. Deane,Gesine Reinert
#t2010
#cBioinformatics
#index2915970
#% 
#!
  
#*LocusZoom: regional visualization of genome-wide association scan results.
#@Randall J. Pruim,Ryan P. Welch,Serena Sanna,Tanya M. Teslovich,Peter S. Chines,Terry P. Gliedt,Michael Boehnke,Gonçalo R. Abecasis,Cristen J. Willer
#t2010
#cBioinformatics
#index2915961
#% 
#!
  
#*Discriminatory power of RNA family models.
#@Christian Höner zu Siederdissen,Ivo L. Hofacker
#t2010
#cBioinformatics
#index2916031
#% 
#!
  
#*SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks.
#@Michel A. Westenberg,Jos B. T. M. Roerdink,Oscar P. Kuipers,Sacha A. F. T. van Hijum
#t2010
#cBioinformatics
#index2915989
#% 
#!
  
#*RPPanalyzer: Analysis of reverse-phase protein array data.
#@Heiko A. Mannsperger,Stephan Gade,Frauke Henjes,Tim Beißbarth,Ulrike Korf
#t2010
#cBioinformatics
#index2916127
#% 
#!
  
#*MamPhEA: a web tool for mammalian phenotype enrichment analysis.
#@Meng-Pin Weng,Ben-Yang Liao
#t2010
#cBioinformatics
#index2916106
#% 
#!
  
#*Vorescore - fold recognition improved by rescoring of protein structure models.
#@Gergely Csaba,Ralf Zimmer
#t2010
#cBioinformatics
#index2916092
#% 
#!
  
#*Text mining meets workflow: linking U-Compare with Taverna.
#@Yoshinobu Kano,Paul Dobson,Mio Nakanishi,Jun-ichi Tsujii,Sophia Ananiadou
#t2010
#cBioinformatics
#index2916109
#% 
#!
  
#*SLOPE: a quick and accurate method for locating non-SNP structural variation from targeted next-generation sequence data.
#@Haley J. Abel,Eric J. Duncavage,Nils Becker,Jon R. Armstrong,Vincent J. Magrini,John D. Pfeifer
#t2010
#cBioinformatics
#index2915926
#% 
#!
  
#*First insight into the prediction of protein folding rate change upon point mutation.
#@Liang-Tsung Huang,M. Michael Gromiha
#t2010
#cBioinformatics
#index2916121
#% 
#!
  
#*CNVineta: a data mining tool for large case-control copy number variation datasets.
#@Michael Wittig,Ingo Helbig,Stefan Schreiber,Andre Franke
#t2010
#cBioinformatics
#index2916099
#% 
#!
  
#*Biological knowledge bases using Wikis: combining the flexibility of Wikis with the structure of databases.
#@Sylvain Brohée,Roland Barriot,Yves Moreau
#t2010
#cBioinformatics
#index2915944
#% 
#!
  
#*Maximum likelihood estimation of locus-specific mutation rates in Y-chromosome short tandem repeats.
#@Osnat Ravid-Amir,Saharon Rosset
#t2010
#cBioinformatics
#index2915966
#% 
#!
  
#*ICPS: an integrative cancer profiler system.
#@Xinyu Zhang,Lin Shi,Yan Liu,Feng Tian,Haitao Zhao,Xiao-ping Miao,Ming-lie Huang,Xiao-yan Zhu
#t2010
#cBioinformatics
#index2915995
#% 
#!
  
#*Ultra-fast FFT protein docking on graphics processors.
#@David W. Ritchie,Vishwesh Venkatraman
#t2010
#cBioinformatics
#index2916062
#% 
#!
  
#*RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming.
#@Yuki Kato,Kengo Sato,Michiaki Hamada,Yoshihide Watanabe,Kiyoshi Asai,Tatsuya Akutsu
#t2010
#cBioinformatics
#index2915974
#% 
#!
  
#*RepMaestro: scalable repeat detection on disk-based genome sequences.
#@Nikolas Askitis,Ranjan Sinha
#t2010
#cBioinformatics
#index2915945
#% 
#!
  
#*Spatial quantification and classification of skin response following perturbation using organotypic skin cultures.
#@Thora Pommerencke,Kathi Westphal,Claudia Ernst,Kai Safferling,Hartmut Dickhaus,Thorsten Steinberg,Pascal Tomakidi,Niels Grabe
#t2010
#cBioinformatics
#index2916069
#% 
#!
  
#*Discovering graphical Granger causality using the truncating lasso penalty.
#@Ali Shojaie,George Michailidis
#t2010
#cBioinformatics
#index2915959
#% 
#!
  
#*MetDAT: a modular and workflow-based free online pipeline for mass spectrometry data processing, analysis and interpretation.
#@Ambarish Biswas,Kalyan C. Mynampati,Shivshankar Umashankar,Sheela Reuben,Gauri Parab,Raghuraj Rao,Velayutham S. Kannan,Sanjay Swarup
#t2010
#cBioinformatics
#index2916083
#% 
#!
  
#*DCGL: an R package for identifying differentially coexpressed genes and links from gene expression microarray data.
#@Bao-Hong Liu,Hui Yu,Kang Tu,Chun Li,Yi-Xue Li,Yuan-Yuan Li
#t2010
#cBioinformatics
#index2916009
#% 
#!
  
#*Integration of pathway knowledge into a reweighted recursive feature elimination approach for risk stratification of cancer patients.
#@Marc Johannes,Jan C. Brase,Holger Fröhlich,Stephan Gade,Mathias C. Gehrmann,Maria Fälth,Holger Sültmann,Tim Beißbarth
#t2010
#cBioinformatics
#index2915981
#% 
#!
  
#*Module-based prediction approach for robust inter-study predictions in microarray data.
#@Zhibao Mi,Kui Shen,Nan Song,Chunrong Cheng,Chi Song,Naftali Kaminski,George C. Tseng
#t2010
#cBioinformatics
#index2916120
#% 
#!
  
#*Deep and wide digging for binding motifs in ChIP-Seq data.
#@Ivan V. Kulakovskiy,Valentina Boeva,Alexander V. Favorov,Vsevolod Makeev
#t2010
#cBioinformatics
#index2916024
#% 
#!
  
#*Discovering drug-drug interactions: a text-mining and reasoning approach based on properties of drug metabolism.
#@Luis Tari,Saadat Anwar,Shanshan Liang,James Cai,Chitta Baral
#t2010
#cBioinformatics
#index2915952
#% 
#!
  
#*TURNIP: tracking unresolved nucleotide polymorphisms in large hard-to-assemble regions of repetitive DNA sequence.
#@Robert Davey,Stephen A. James,Jo L. Dicks,Ian N. Roberts
#t2010
#cBioinformatics
#index2916076
#% 
#!
  
#*Bayesian experts in exploring reaction kinetics of transcription circuits.
#@Ryo Yoshida,Masaya M. Saito,Hiromichi Nagao,Tomoyuki Higuchi
#t2010
#cBioinformatics
#index2916113
#% 
#!
  
#*TRANSWESD: inferring cellular networks with transitive reduction.
#@Steffen Klamt,Robert J. Flassig,Kai Sundmacher
#t2010
#cBioinformatics
#index2915967
#% 
#!
  
#*Classification of ncRNAs using position and size information in deep sequencing data.
#@Florian Erhard,Ralf Zimmer
#t2010
#cBioinformatics
#index2915938
#% 
#!
  
#*Mutual information is critically dependent on prior assumptions: would the estimate of mutual information please identify itself?
#@Andrew D. Fernandes,Gregory B. Gloor
#t2010
#cBioinformatics
#index2916098
#% 
#!
  
#*Utopia documents: linking scholarly literature with research data.
#@Terri K. Attwood,Douglas B. Kell,Philip McDermott,James Marsh,Stephen Pettifer,David Thorne
#t2010
#cBioinformatics
#index2916001
#% 
#!
  
#*Ruffus: a lightweight Python library for computational pipelines.
#@Leo Goodstadt
#t2010
#cBioinformatics
#index2915925
#% 
#!
  
#*GASSST: global alignment short sequence search tool.
#@Guillaume Rizk,Dominique Lavenier
#t2010
#cBioinformatics
#index2915931
#% 
#!
  
#*BioRuby: bioinformatics software for the Ruby programming language.
#@Naohisa Goto,Pjotr Prins,Mitsuteru Nakao,Raoul Bonnal,Jan Aerts,Toshiaki Katayama
#t2010
#cBioinformatics
#index2916112
#% 
#!
  
#*: merging pedigrees to facilitate family-based genetic statistical analyses.
#@Rosemarie Plaetke,Federico Balbi
#t2010
#cBioinformatics
#index2916084
#% 
#!
  
#*A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data.
#@Penghao Wang,Pengyi Yang,Jonathan Arthur,Jean Yee Hwa Yang
#t2010
#cBioinformatics
#index2915994
#% 
#!
  
#*Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins.
#@Yanjun Qi,Oznur Tastan,Jaime G. Carbonell,Judith Klein-Seetharaman,Jason Weston
#t2010
#cBioinformatics
#index2915988
#% 
#!
  
#*Measuring the physical cohesiveness of proteins using physical interaction enrichment.
#@Iziah Edwin Sama,Martijn A. Huynen
#t2010
#cBioinformatics
#index2916030
#% 
#!
  
#*A study of the efficiency of pooling in haplotype estimation.
#@Anthony Y. C. Kuk,Jinfeng Xu,Yaning Yang
#t2010
#cBioinformatics
#index2916107
#% 
#!
  
#*Chromaligner: a web server for chromatogram alignment.
#@San-Yuan Wang,Tsung-Jung Ho,Ching-Hua Kuo,Yufeng J. Tseng
#t2010
#cBioinformatics
#index2916047
#% 
#!
  
#*A Novel method for similarity analysis and protein sub-cellular localization prediction.
#@Bo Liao,Benyou Liao,Xingming Sun,Qingguang Zeng
#t2010
#cBioinformatics
#index2916070
#% 
#!
  
#*Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies.
#@Tsun-Po Yang,Claude Beazley,Stephen B. Montgomery,Antigone S. Dimas,Maria Gutierrez-Arcelus,Barbara E. Stranger,Panos Deloukas,Emmanouil T. Dermitzakis
#t2010
#cBioinformatics
#index2916075
#% 
#!
  
#*CopyMap: localization and calling of copy number variation by joint analysis of hybridization data from multiple individuals.
#@Sebastian Zöllner
#t2010
#cBioinformatics
#index2915951
#% 
#!
  
#*GLOOME: gain loss mapping engine.
#@Ofir Cohen,Haim Ashkenazy,Frida Belinky,Dorothée Huchon,Tal Pupko
#t2010
#cBioinformatics
#index2916004
#% 
#!
  
#*Solenoid and non-solenoid protein recognition using stationary wavelet packet transform.
#@An P. N. Vo,Nha Nguyen,Heng Huang
#t2010
#cBioinformatics
#index2916057
#% 
#!
  
#*Using coalitional games on biological networks to measure centrality and power of genes.
#@Stefano Moretti,Vito Fragnelli,Fioravante Patrone,Stefano Bonassi
#t2010
#cBioinformatics
#index2915982
#% 
#!
  
#*On reverse engineering of gene interaction networks using time course data with repeated measurements.
#@Edward R. Morrissey,M. A. Juárez,Katherine J. Denby,N. J. Burroughs
#t2010
#cBioinformatics
#index2916037
#% 
#!
  
#*Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data.
#@Zhuhong You,Ying-Ke Lei,Jie Gui,De-Shuang Huang,Xiaobo Zhou
#t2010
#cBioinformatics
#index2915937
#% 
#!
  
#*Integrating genome assemblies with MAIA.
#@Jurgen F. Nijkamp,Wynand Winterbach,Marcel van den Broek,Jean-Marc Daran,Marcel J. T. Reinders,Dick de Ridder
#t2010
#cBioinformatics
#index2915987
#% 
#!
  
#*A Bayesian method for 3D macromolecular structure inference using class average images from single particle electron microscopy.
#@Navdeep Jaitly,Marcus A. Brubaker,John L. Rubinstein,Ryan H. Lilien
#t2010
#cBioinformatics
#index2916134
#% 
#!
  
#*R3D Align: global pairwise alignment of RNA 3D structures using local superpositions.
#@Ryan R. Rahrig,Neocles Leontis,Craig L. Zirbel
#t2010
#cBioinformatics
#index2916093
#% 
#!
  
#*ROAST: rotation gene set tests for complex microarray experiments.
#@Di Wu,Elgene Lim,François Vaillant,Marie-Liesse Asselin-Labat,Jane E. Visvader,Gordon K. Smyth
#t2010
#cBioinformatics
#index2916061
#% 
#!
  
#*Towards optimal alignment of protein structure distance matrices.
#@Inken Wohlers,Francisco S. Domingues,Gunnar W. Klau
#t2010
#cBioinformatics
#index2916011
#% 
#!
  
#*A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes.
#@Guy Naamati,Manor Askenazi,Michal Linial
#t2010
#cBioinformatics
#index2915960
#% 
#!
  
#*BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis.
#@Bret R. Larget,Satish K. Kotha,Colin N. Dewey,Cécile Ané
#t2010
#cBioinformatics
#index2915950
#% 
#!
  
#*METAREP: JCVI metagenomics reports - an open source tool for high-performance comparative metagenomics.
#@Johannes Goll,Douglas B. Rusch,David M. Tanenbaum,Mathangi Thiagarajan,Kelvin Li,Barbara A. Methé,Shibu Yooseph
#t2010
#cBioinformatics
#index2916023
#% 
#!
  
#*Semi-supervised recursively partitioned mixture models for identifying cancer subtypes.
#@Devin C. Koestler,Carmen J. Marsit,Brock C. Christensen,Margaret R. Karagas,Raphael Bueno,David J. Sugarbaker,Karl Kelsey,E. Andres Houseman
#t2010
#cBioinformatics
#index2915957
#% 
#!
  
#*Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes.
#@Carlo Vittorio Cannistraci,Timothy Ravasi,Franco Maria Montevecchi,Trey Ideker,Massimo Alessio
#t2010
#cBioinformatics
#index2916123
#% 
#!
  
#*PAR: a PARallel and distributed job crusher.
#@Francois Berenger,Camille Coti,Kam Y. J. Zhang
#t2010
#cBioinformatics
#index2915993
#% 
#!
  
#*An alignment-free model for comparison of regulatory sequences.
#@Hashem Koohy,Nigel P. Dyer,John E. Reid,Georgy Koentges,Sascha Ott
#t2010
#cBioinformatics
#index2916097
#% 
#!
  
#*Multiple gene expression profile alignment for microarray time-series data clustering.
#@Numanul Subhani,Luis Rueda,Alioune Ngom,Conrad J. Burden
#t2010
#cBioinformatics
#index2915932
#% 
#!
  
#*Selenoprofiles: profile-based scanning of eukaryotic genome sequences for selenoprotein genes.
#@M. Mariotti,R. Guigó
#t2010
#cBioinformatics
#index2915973
#% 
#!
  
#*Editing, validating and translating of SBGN maps.
#@Tobias Czauderna,Christian Klukas,Falk Schreiber
#t2010
#cBioinformatics
#index2915946
#% 
#!
  
#*An alignment-free method to identify candidate orthologous enhancers in multiple genomes.
#@Manonmani Arunachalam,Karthik Jayasurya,Pavel Tomancak,Uwe Ohler
#t2010
#cBioinformatics
#index2915928
#% 
#!
  
#*Logic Forest: an ensemble classifier for discovering logical combinations of binary markers.
#@Bethany J. Wolf,Elizabeth G. Hill,Elizabeth H. Slate
#t2010
#cBioinformatics
#index2916078
#% 
#!
  
#*RDP3: a flexible and fast computer program for analyzing recombination.
#@Darren P. Martin,Philippe Lemey,Martin Lott,Vincent Moulton,David Posada,Pierre Lefeuvre
#t2010
#cBioinformatics
#index2916038
#% 
#!
  
#*proTF: a comprehensive data and phylogenomics resource for prokaryotic transcription factors.
#@Jie Bai,Junrong Wang,Feng Xue,Jingsong Li,Lijing Bu,Junming Hu,Gang Xu,Qiyu Bao,Guoping Zhao,Xiaoming Ding,Jie Yan,Jinyu Wu
#t2010
#cBioinformatics
#index2916129
#% 
#!
  
#*CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data.
#@Elana J. Fertig,Jie Ding,Alexander V. Favorov,Giovanni Parmigiani,Michael F. Ochs
#t2010
#cBioinformatics
#index2916040
#% 
#!
  
#*Obtaining better quality final clustering by merging a collection of clusterings.
#@Selim Mimaroglu,Ertunc Erdil
#t2010
#cBioinformatics
#index2916104
#% 
#!
  
#*ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments.
#@Alexander Lachmann,Huilei Xu,Jayanth Krishnan,Seth I. Berger,Amin R. Mazloom,Avi Ma'ayan
#t2010
#cBioinformatics
#index2916029
#% 
#!
  
#*Sequencing delivers diminishing returns for homology detection: implications for mapping the protein universe.
#@Daniel Chubb,Benjamin R. Jefferys,Michael J. E. Sternberg,Lawrence A. Kelley
#t2010
#cBioinformatics
#index2916115
#% 
#!
  
#*Cytoscape Web: an interactive web-based network browser.
#@Christian T. Lopes,Max Franz,Farzana Kazi,Sylva L. Donaldson,Quaid Morris,Gary D. Bader
#t2010
#cBioinformatics
#index2916130
#% 
#!
  
#*Preferential use of protein domain pairs as interaction mediators: order and transitivity.
#@Zohar Itzhaki,Eyal Akiva,Hanah Margalit
#t2010
#cBioinformatics
#index2916094
#% 
#!
  
#*Prototypes of elementary functional loops unravel evolutionary connections between protein functions.
#@Alexander Goncearenco,Igor N. Berezovsky
#t2010
#cBioinformatics
#index2916085
#% 
#!
  
#*Candidate gene prioritization based on spatially mapped gene expression: an application to XLMR.
#@Rosario M. Piro,Ivan Molineris,Ugo Ala,Paolo Provero,Ferdinando Di Cunto
#t2010
#cBioinformatics
#index2915929
#% 
#!
  
#*Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks.
#@Arnold Kuzniar,Somdutta Dhir,Harm Nijveen,Sándor Pongor,Jack A. M. Leunissen
#t2010
#cBioinformatics
#index2915964
#% 
#!
  
#*Detecting two-locus associations allowing for interactions in genome-wide association studies.
#@Xiang Wan,Can Yang,Qiang Yang,Hong Xue,Nelson L. S. Tang,Weichuan Yu
#t2010
#cBioinformatics
#index2915986
#% 
#!
  
#*Computational analysis of tissue-specific gene networks: application to murine retinal functional studies.
#@Jianfei Hu,Jun Wan,Laszlo Hackler Jr.,Donald J. Zack,Jiang Qian
#t2010
#cBioinformatics
#index2916012
#% 
#!
  
#*BDVal: reproducible large-scale predictive model development and validation in high-throughput datasets.
#@Kevin C. Dorff,Nyasha Chambwe,Marko Srdanovic,Fabien Campagne
#t2010
#cBioinformatics
#index2916067
#% 
#!
  
#*Global modeling of transcriptional responses in interaction networks.
#@Leo Lahti,Juha E. A. Knuuttila,Samuel Kaski
#t2010
#cBioinformatics
#index2916002
#% 
#!
  
#*PriorsEditor: a tool for the creation and use of positional priors in motif discovery.
#@Kjetil Klepper,Finn Drabløs
#t2010
#cBioinformatics
#index2916133
#% 
#!
  
#*MetNetMaker: a free and open-source tool for the creation of novel metabolic networks in SBML format.
#@Thomas Forth,Glenn A. McConkey,David R. Westhead
#t2010
#cBioinformatics
#index2916086
#% 
#!
  
#*MASiVE: Mapping and Analysis of SireVirus Elements in plant genome sequences.
#@Nikos Darzentas,A. Bousios,V. Apostolidou,A. S. Tsaftaris
#t2010
#cBioinformatics
#index2916021
#% 
#!
  
#*PICMI: mapping point mutations on genomes.
#@Loredana Le Pera,Paolo Marcatili,Anna Tramontano
#t2010
#cBioinformatics
#index2916058
#% 
#!
  
#*Fast overlapping of protein contact maps by alignment of eigenvectors.
#@Pietro di Lena,Piero Fariselli,Luciano Margara,Marco Vassura,Rita Casadio
#t2010
#cBioinformatics
#index2915949
#% 
#!
  
#*Association screening of common and rare genetic variants by penalized regression.
#@Hua Zhou,Mary E. Sehl,Janet S. Sinsheimer,Kenneth Lange
#t2010
#cBioinformatics
#index2915927
#% 
#!
  
#*Parsimony and likelihood reconstruction of human segmental duplications.
#@Crystal L. Kahn,Borislav H. Hristov,Benjamin J. Raphael
#t2010
#cBioinformatics
#index2916022
#% 
#!
  
#*genoPlotR: comparative gene and genome visualization in R.
#@Lionel Guy,Jens Roat Kultima,Siv G. E. Andersson
#t2010
#cBioinformatics
#index2916132
#% 
#!
  
#*Search and clustering orders of magnitude faster than BLAST.
#@Robert C. Edgar
#t2010
#cBioinformatics
#index2915923
#% 
#!
  
#*FastPval: a fast and memory efficient program to calculate very low -values from empirical distribution.
#@Mulin Jun Li,Pak Chung Sham,Junwen Wang
#t2010
#cBioinformatics
#index2916048
#% 
#!
  
#*OpenStructure: a flexible software framework for computational structural biology.
#@Marco Biasini,Valerio Mariani,Jürgen Haas,Stefan Scheuber,Andreas D. Schenk,Torsten Schwede,Ansgar Philippsen
#t2010
#cBioinformatics
#index2916122
#% 
#!
  
#*Simple sequence-based kernels do not predict protein-protein interactions.
#@Jiantao Yu,Maozu Guo,Chris J. Needham,Yangchao Huang,Lu Cai,David R. Westhead
#t2010
#cBioinformatics
#index2916105
#% 
#!
  
#*Robust relationship inference in genome-wide association studies.
#@Ani Manichaikul,Josyf Mychaleckyj,Stephen S. Rich,Kathy Daly,Michèle Sale,Wei-Min Chen
#t2010
#cBioinformatics
#index2916077
#% 
#!
  
#*SBML2TikZ: supporting the SBML render extension in LaTeX.
#@Si Yuan Shen,Frank T. Bergmann,Herbert M. Sauro
#t2010
#cBioinformatics
#index2916096
#% 
#!
  
#*ExTopoDB: a database of experimentally derived topological models of transmembrane proteins.
#@Georgios N. Tsaousis,Konstantinos D. Tsirigos,Xanthi D. Andrianou,Theodore D. Liakopoulos,Pantelis G. Bagos,Stavros J. Hamodrakas
#t2010
#cBioinformatics
#index2916028
#% 
#!
  
#*Exposing the co-adaptive potential of protein-protein interfaces through computational sequence design.
#@Menachem Fromer,Michal Linial
#t2010
#cBioinformatics
#index2915976
#% 
#!
  
#*Multi-objective pairwise RNA sequence alignment.
#@Akito Taneda
#t2010
#cBioinformatics
#index2916095
#% 
#!
  
#*: software for designing synthetic ribosome binding sites that yields a desired level of protein expression.
#@Dokyun Na,Doheon Lee
#t2010
#cBioinformatics
#index2916068
#% 
#!
  
#*A simple and fast method to determine the parameters for fuzzy c-means cluster analysis.
#@Veit Schwämmle,Ole Nørregaard Jensen
#t2010
#cBioinformatics
#index2915965
#% 
#!
  
#*Exchangeable random variables.
#@Phillip Good
#t2010
#cBioinformatics
#index2916131
#% 
#!
  
#*RefProtDom: a protein database with improved domain boundaries and homology relationships.
#@Mileidy W. Gonzalez,William R. Pearson
#t2010
#cBioinformatics
#index2916114
#% 
#!
  
#*C-It: a knowledge database for tissue-enriched genes.
#@Pascal Gellert,Katharina Jenniches,Thomas Braun,Shizuka Uchida
#t2010
#cBioinformatics
#index2915930
#% 
#!
  
#*SylArray: a web server for automated detection of miRNA effects from expression data.
#@Nenad Bartonicek,Anton J. Enright
#t2010
#cBioinformatics
#index2916042
#% 
#!
  
#*METAL: fast and efficient meta-analysis of genomewide association scans.
#@Cristen J. Willer,Yun Li,Gonçalo R. Abecasis
#t2010
#cBioinformatics
#index2916049
#% 
#!
  
#*Improving disease gene prioritization using the semantic similarity of Gene Ontology terms.
#@Andreas Schlicker,Thomas Lengauer,Mario Albrecht
#t2010
#cBioinformatics
#index2916059
#% 
#!
  
#*Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology.
#@Wayne Delport,Art F. Y. Poon,Simon D. W. Frost,Sergei L. Kosakovsky Pond
#t2010
#cBioinformatics
#index2916087
#% 
#!
  
#*Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites.
#@Stephen A. Ramsey,Theo A. Knijnenburg,Kathleen A. Kennedy,Daniel E. Zak,Mark Gilchrist,Elizabeth S. Gold,Carrie D. Johnson,Aaron E. Lampano,Vladimir Litvak,Garnet Navarro,Tetyana Stolyar,Alan Aderem,Ilya Shmulevich
#t2010
#cBioinformatics
#index2915940
#% 
#!
  
#*SeqEM: an adaptive genotype-calling approach for next-generation sequencing studies.
#@E. R. Martin,D. D. Kinnamon,M. A. Schmidt,E. H. Powell,Stephan Züchner,R. W. Morris
#t2010
#cBioinformatics
#index2915985
#% 
#!
  
#*A graphical method for reducing and relating models in systems biology.
#@Steven Gay,Sylvain Soliman,François Fages
#t2010
#cBioinformatics
#index2915975
#% 
#!
  
#*SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts.
#@Manuel Rueda,Vsevolod Katritch,Eugene Raush,Ruben Abagyan
#t2010
#cBioinformatics
#index2916035
#% 
#!
  
#*Spial: analysis of subtype-specific features in multiple sequence alignments of proteins.
#@Arthur Wuster,A. J. Venkatakrishnan,Gebhard F. X. Schertler,M. Madan Babu
#t2010
#cBioinformatics
#index2916073
#% 
#!
  
#*Fixed point characterization of biological networks with complex graph topology.
#@N. Radde
#t2010
#cBioinformatics
#index2916066
#% 
#!
  
#*Characterizing molecular adaptation: a hierarchical approach to assess the selective influence of amino acid properties.
#@Saheli Datta,Raquel Prado,Abel Rodríguez,Ananías A. Escalante
#t2010
#cBioinformatics
#index2916080
#% 
#!
  
#*Improving performances of suboptimal greedy iterative biclustering heuristics via localization.
#@Cesim Erten,Melih Sözdinler
#t2010
#cBioinformatics
#index2916006
#% 
#!
  
#*Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data.
#@H. Paul Benton,Elizabeth J. Want,Timothy M. D. Ebbels
#t2010
#cBioinformatics
#index2916050
#% 
#!
  
#*Ontology for medicinal materials based on traditional Korean medicine.
#@Hyunchul Jang,Jinhyun Kim,Sang-Kyun Kim,Chul Kim,Soon-Hee Bae,Anna Kim,Dong-Myung Eom,Mi-Young Song
#t2010
#cBioinformatics
#index2915955
#% 
#!
  
#*BRAT: bisulfite-treated reads analysis tool.
#@Elena Yavorska Harris,Nadia Ponts,Aleksandr Levchuk,Karine G. Le Roch,Stefano Lonardi
#t2010
#cBioinformatics
#index2915984
#% 
#!
  
#*Metric learning for enzyme active-site search.
#@Tsuyoshi Kato,Nozomi Nagano
#t2010
#cBioinformatics
#index2915977
#% 
#!
  
#*RAPID detection of gene-gene interactions in genome-wide association studies.
#@Dumitru Brinza,Matthew Schultz,Glenn Tesler,Vineet Bafna
#t2010
#cBioinformatics
#index2916020
#% 
#!
  
#*A cell-based simulation software for multi-cellular systems.
#@Stefan Hoehme,Dirk Drasdo
#t2010
#cBioinformatics
#index2916013
#% 
#!
  
#*QuantProReloaded: quantitative analysis of microspot immunoassays.
#@Anika Jöcker,Johanna Sonntag,Frauke Henjes,Frank Götschel,Achim Tresch,Tim Beißbarth,Stefan Wiemann,Ulrike Korf
#t2010
#cBioinformatics
#index2915958
#% 
#!
  
#*Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques.
#@Rahul Satija,Jotun Hein,Gerton Lunter
#t2010
#cBioinformatics
#index2916056
#% 
#!
  
#*A unified index of sequence quality and contig overlap for DNA barcoding.
#@Damon P. Little
#t2010
#cBioinformatics
#index2915991
#% 
#!
  
#*Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape.
#@Konstantin Pentchev,Keiichiro Ono,Ralf Herwig,Trey Ideker,Atanas Kamburov
#t2010
#cBioinformatics
#index2915934
#% 
#!
  
#*A discriminatory function for prediction of protein-DNA interactions based on alpha shape modeling.
#@Weiqiang Zhou,Hong Yan
#t2010
#cBioinformatics
#index2915939
#% 
#!
  
#*The misuse of terms in scientific literature.
#@Anna Marabotti,Angelo M. Facchiano
#t2010
#cBioinformatics
#index2915999
#% 
#!
  
#*Novel sequence-based method for identifying transcription factor binding sites in prokaryotic genomes.
#@Gurmukh Sahota,Gary D. Stormo
#t2010
#cBioinformatics
#index2916005
#% 
#!
  
#*girafe - an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads.
#@Joern Toedling,Constance Ciaudo,Olivier Voinnet,Edith Heard,Emmanuel Barillot
#t2010
#cBioinformatics
#index2916074
#% 
#!
  
#*TreesimJ: a flexible, forward time population genetic simulator.
#@Brendan O'Fallon
#t2010
#cBioinformatics
#index2916103
#% 
#!
  
#*is-rSNP: a novel technique for regulatory SNP detection.
#@Geoff MacIntyre,James Bailey,Izhak Haviv,Adam Kowalczyk
#t2010
#cBioinformatics
#index2915948
#% 
#!
  
#*Gene function prediction using semantic similarity clustering and enrichment analysis in the malaria parasite .
#@Philip M. R. Tedder,James R. Bradford,Chris J. Needham,Glenn A. McConkey,Andrew J. Bulpitt,David R. Westhead
#t2010
#cBioinformatics
#index2915924
#% 
#!
  
#*Automated construction and analysis of the design space for biochemical systems.
#@Rick A. Fasani,Michael A. Savageau
#t2010
#cBioinformatics
#index2916036
#% 
#!
  
#*BigWig and BigBed: enabling browsing of large distributed datasets.
#@W. James Kent,Ann S. Zweig,Galt P. Barber,Angie S. Hinrichs,Donna Karolchik
#t2010
#cBioinformatics
#index2915941
#% 
#!
  
#*Mass spectrometry data processing using zero-crossing lines in multi-scale of Gaussian derivative wavelet.
#@Nha Nguyen,Heng Huang,Soontorn Oraintara,An P. N. Vo
#t2010
#cBioinformatics
#index2916110
#% 
#!
  
#*HybridNET: a tool for constructing hybridization networks.
#@Zhi-Zhong Chen,Lusheng Wang
#t2010
#cBioinformatics
#index2916088
#% 
#!
  
#*Statistical considerations for digital approaches to non-invasive fetal genotyping.
#@Tianjiao Chu,Kimberly Bunce,W. Allen Hogge,David G. Peters
#t2010
#cBioinformatics
#index2916117
#% 
#!
  
#*SPRINT: side-chain prediction inference toolbox for multistate protein design.
#@Menachem Fromer,Chen Yanover,Amir Harel,Ori Shachar,Yair Weiss,Michal Linial
#t2010
#cBioinformatics
#index2916041
#% 
#!
  
#*Probabilistic analysis of gene expression measurements from heterogeneous tissues.
#@Timo Erkkilä,Saara Lehmusvaara,Pekka Ruusuvuori,Tapio Visakorpi,Ilya Shmulevich,Harri Lähdesmäki
#t2010
#cBioinformatics
#index2916055
#% 
#!
  
#*DMDM: domain mapping of disease mutations.
#@Thomas A. Peterson,Asa Adadey,Ivette Santana-Cruz,Yanan Sun,Andrew Winder,Maricel G. Kann
#t2010
#cBioinformatics
#index2916027
#% 
#!
  
#*GolgiP: prediction of Golgi-resident proteins in plants.
#@Wen-Chi Chou,Yanbin Yin,Ying Xu
#t2010
#cBioinformatics
#index2915969
#% 
#!
  
#*PathwayAccess: CellDesigner plugins for pathway databases.
#@John L. Van Hemert,Julie A. Dickerson
#t2010
#cBioinformatics
#index2916079
#% 
#!
  
#*Robust and accurate data enrichment statistics via distribution function of sum of weights.
#@Aleksandar Stojmirovic,Yi-Kuo Yu
#t2010
#cBioinformatics
#index2916014
#% 
#!
  
#*Identification of Context-Dependent Motifs by Contrasting ChIP Binding Data.
#@Mike J. Mason,Kathrin Plath,Qing Zhou
#t2010
#cBioinformatics
#index2916089
#% 
#!
  
#*Analyzing taxonomic classification using extensible Markov models.
#@Rao M. Kotamarti,Michael Hahsler,Douglas Raiford,Monnie McGee,Margaret H. Dunham
#t2010
#cBioinformatics
#index2915962
#% 
#!
  
#*Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data.
#@Jirí Macas,Pavel Neumann,Petr Novák,Jiming Jiang
#t2010
#cBioinformatics
#index2915956
#% 
#!
  
#*Modeling associations between genetic markers using Bayesian networks.
#@Edwin Villanueva,Carlos Dias Maciel
#t2010
#cBioinformatics
#index2915983
#% 
#!
  
#*Dealing with sparse data in predicting outcomes of HIV combination therapies.
#@Jasmina Bogojeska,Steffen Bickel,André Altmann,Thomas Lengauer
#t2010
#cBioinformatics
#index2915933
#% 
#!
  
#*Interactive and fuzzy search: a dynamic way to explore MEDLINE.
#@Jiannan Wang,Inci Cetindil,Shengyue Ji,Chen Li,Xiaohui Xie,Guoliang Li,Jianhua Feng
#t2010
#cBioinformatics
#index2916000
#% 
#!
  
#*miRNAkey: a software for microRNA deep sequencing analysis.
#@Roy Ronen,Ido Gan,Shira Modai,Alona Sukacheov,Gideon Dror,Eran Halperin,Noam Shomron
#t2010
#cBioinformatics
#index2916015
#% 
#!
  
#*Efficient parameter search for qualitative models of regulatory networks using symbolic model checking.
#@Grégory Batt,Michel Page,Irene Cantone,Gregor Goessler,Pedro T. Monteiro,Hidde de Jong
#t2010
#cBioinformatics
#index2916060
#% 
#!
  
#*The mRNA landscape at yeast translation initiation sites.
#@A. Robbins-Pianka,M. D. Rice,M. P. Weir
#t2010
#cBioinformatics
#index2916008
#% 
#!
  
#*Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images.
#@Apichat Suratanee,Ilka Rebhan,Petr Matula,Anil Kumar,Lars Kaderali,Karl Rohr,Ralf Bartenschlager,Roland Eils,Rainer König
#t2010
#cBioinformatics
#index2915947
#% 
#!
  
#*iAlign: a method for the structural comparison of protein-protein interfaces.
#@Mu Gao,Jeffrey Skolnick
#t2010
#cBioinformatics
#index2915942
#% 
#!
  
#*mbmdr: an R package for exploring gene-gene interactions associated with binary or quantitative traits.
#@M. Luz Calle,Víctor Urrea,Núria Malats,Kristel Van Steen
#t2010
#cBioinformatics
#index2916065
#% 
#!
  
#*NoiseMaker: simulated screens for statistical assessment.
#@Phoenix Kwan,Amanda Birmingham
#t2010
#cBioinformatics
#index2915978
#% 
#!
  
#*Combined prediction of Tat and Sec signal peptides with hidden Markov models.
#@Pantelis G. Bagos,Elisanthi P. Nikolaou,Theodore D. Liakopoulos,Konstantinos D. Tsirigos
#t2010
#cBioinformatics
#index2916116
#% 
#!
  
#*De-correlating expression in gene-set analysis.
#@Dougu Nam
#t2010
#cBioinformatics
#index2915997
#% 
#!
  
#*The binding site distance test score: a robust method for the assessment of predicted protein binding sites.
#@Daniel B. Roche,Stuart J. Tetchner,Liam J. McGuffin
#t2010
#cBioinformatics
#index2915992
#% 
#!
  
#*Identifying informative subsets of the Gene Ontology with information bottleneck methods.
#@Bo Jin,Xinghua Lu
#t2010
#cBioinformatics
#index2916033
#% 
#!
  
#*A varying threshold method for ChIP peak-calling using multiple sources of information.
#@Kuan-Bei Chen,Yu Zhang
#t2010
#cBioinformatics
#index2915963
#% 
#!
  
#*SynBioWave - a real-time communication platform for molecular and synthetic biology.
#@Paul R. Staab,Jörg Walossek,David Nellessen,Raik Grünberg,Katja M. Arndt,Kristian M. Müller
#t2010
#cBioinformatics
#index2916102
#% 
#!
  
#*Predictive models for population performance on real biological fitness landscapes.
#@William Rowe,David C. Wedge,Mark Platt,Douglas B. Kell,Joshua D. Knowles
#t2010
#cBioinformatics
#index2915921
#% 
#!
  
#*Inferring cancer subnetwork markers using density-constrained biclustering.
#@Phuong Dao,Recep Colak,Raheleh Salari,Flavia Moser,Elai Davicioni,Alexander Schönhuth,Martin Ester
#t2010
#cBioinformatics
#index2916125
#% 
#!
  
#*A sample storage management system for biobanks.
#@C. Voegele,L. Alteyrac,E. Caboux,M. Smans,F. Lesueur,F. Le Calvez-Kelm,P. Hainaut
#t2010
#cBioinformatics
#index2916051
#% 
#!
  
#*MetPA: a web-based metabolomics tool for pathway analysis and visualization.
#@Jianguo Xia,David S. Wishart
#t2010
#cBioinformatics
#index2916054
#% 
#!
  
#*Characteristics of 454 pyrosequencing data - enabling realistic simulation with flowsim.
#@Susanne Balzer,Ketil Malde,Anders Lanzén,Animesh Sharma,Inge Jonassen
#t2010
#cBioinformatics
#index2916019
#% 
#!
  
#*A comparison of several algorithms for the single individual SNP haplotyping reconstruction problem.
#@Filippo Geraci
#t2010
#cBioinformatics
#index2916044
#% 
#!
  
#*Cross-species queries of large gene expression databases.
#@Hai-Son Le,Zoltán N. Oltvai,Ziv Bar-Joseph
#t2010
#cBioinformatics
#index2916124
#% 
#!
  
#*BioXSD: the common data-exchange format for everyday bioinformatics web services.
#@Matús Kalas,Pål Puntervoll,Alexandre Joseph,Edita Bartaseviciute,Armin Töpfer,Prabakar Venkataraman,Steve Pettifer,Jan Christian Bryne,Jon Ison,Christophe Blanchet,Kristoffer Rapacki,Inge Jonassen
#t2010
#cBioinformatics
#index2916016
#% 
#!
  
#*Automated analysis of time-lapse fluorescence microscopy images: from live cell images to intracellular foci.
#@Oleh Dzyubachyk,Jeroen Essers,Wiggert A. van Cappellen,Céline Baldeyron,Akiko Inagaki,Wiro J. Niessen,Erik H. W. Meijering
#t2010
#cBioinformatics
#index2916118
#% 
#!
  
#*Ontology- and graph-based similarity assessment in biological networks.
#@Haiying Wang,Huiru Zheng,Francisco Azuaje
#t2010
#cBioinformatics
#index2916064
#% 
#!
  
#*PubDNA Finder: a web database linking full-text articles to sequences of nucleic acids.
#@Miguel García-Remesal,Alejandro Cuevas,David Pérez-Rey,Luis Martín,Alberto Anguita,Diana de la Iglesia,Guillermo de la Calle,José Crespo,Victor Maojo
#t2010
#cBioinformatics
#index2916090
#% 
#!
  
#*Response to Letter to the Editor by Philip Good on To Permute or Not to Permute.
#@Violeta Calian,Jason C. Hsu
#t2010
#cBioinformatics
#index2916071
#% 
#!
  
#*A Gibbs sampling strategy applied to the mapping of ambiguous short-sequence tags.
#@Jianrong Wang,Ahsan Huda,Victoria V. Lunyak,I. King Jordan
#t2010
#cBioinformatics
#index2916052
#% 
#!
  
#*ODES: an overlapping dense sub-graph algorithm.
#@James Long,Chris Hartman
#t2010
#cBioinformatics
#index2916026
#% 
#!
  
#*Structural genomics of histone tail recognition.
#@Minghua Wang,Man Wai Mok,Hong Harper,Wen Hwa Lee,Jinrong Min,Stefan Knapp,Udo C. T. Oppermann,Brian Marsden,Matthieu Schapira
#t2010
#cBioinformatics
#index2915968
#% 
#!
  
#*DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze gene-disease networks.
#@Anna Bauer-Mehren,Michael Rautschka,Ferran Sanz,Laura Inés Furlong
#t2010
#cBioinformatics
#index2916111
#% 
#!
  
#*TFInfer: a tool for probabilistic inference of transcription factor activities.
#@Hafiz Muhammad Shahzad Asif,Matthew D. Rolfe,Jeff Green,Neil D. Lawrence,Magnus Rattray,Guido Sanguinetti
#t2010
#cBioinformatics
#index2915936
#% 
#!
  
#*A system-level investigation into the cellular toxic response mechanism mediated by AhR signal transduction pathway.
#@Jungsoo Gim,Ho-Shik Kim,Junil Kim,Minsoo Choi,Jeong-Rae Kim,Yeun-Jun Chung,Kwang-Hyun Cho
#t2010
#cBioinformatics
#index2916101
#% 
#!
  
#*Prophossi: automating expert validation of phosphopeptide-spectrum matches from tandem mass spectrometry.
#@David M. A. Martin,Isabelle R. E. Nett,Franck Vandermoere,Jonathan D. Barber,Nicholas A. Morrice,Michael A. J. Ferguson
#t2010
#cBioinformatics
#index2916126
#% 
#!
  
#*G-SQZ: compact encoding of genomic sequence and quality data.
#@Waibhav Tembe,James Lowey,Edward Suh
#t2010
#cBioinformatics
#index2915998
#% 
#!
  
#*PSExplorer: whole parameter space exploration for molecular signaling pathway dynamics.
#@Thai Quang Tung,Doheon Lee
#t2010
#cBioinformatics
#index2916034
#% 
#!
  
#*A framework for oligonucleotide microarray preprocessing.
#@Benilton Carvalho,Rafael A. Irizarry
#t2010
#cBioinformatics
#index2915922
#% 
#!
  
#*PERMORY: an LD-exploiting permutation test algorithm for powerful genome-wide association testing.
#@Roman Pahl,Helmut Schäfer
#t2010
#cBioinformatics
#index2916081
#% 
#!
  
#*Improved sequence-based prediction of disordered regions with multilayer fusion of multiple information sources.
#@Marcin J. Mizianty,Wojciech Stach,Ke Chen,Kanaka Durga Kedarisetti,Fatemeh Miri Disfani,Lukasz A. Kurgan
#t2010
#cBioinformatics
#index2916043
#% 
#!
  
#*EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes.
#@Khalid Mahmood,Arun Siddharth Konagurthu,Jiangning Song,Ashley M. Buckle,Geoffrey I. Webb,James C. Whisstock
#t2010
#cBioinformatics
#index2915943
#% 
#!
  
#*Dynamic deterministic effects propagation networks: learning signalling pathways from longitudinal protein array data.
#@Christian Bender,Frauke Henjes,Holger Fröhlich,Stefan Wiemann,Ulrike Korf,Tim Beißbarth
#t2010
#cBioinformatics
#index2916108
#% 
#!
  
#*Model-based clustering of microarray expression data via latent Gaussian mixture models.
#@Paul David McNicholas,Thomas Brendan Murphy
#t2010
#cBioinformatics
#index2916091
#% 
#!
  
#*XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography.
#@Jose-Roman Bilbao-Castro,Carlos Oscar Sánchez Sorzano,Inmaculada García,José-Jesús Fernández
#t2010
#cBioinformatics
#index2916137
#% 
#!
  
#*Mining metabolic pathways through gene expression.
#@Timothy Hancock,Ichigaku Takigawa,Hiroshi Mamitsuka
#t2010
#cBioinformatics
#index2916018
#% 
#!
  
#*Improving structure alignment-based prediction of SCOP families using Vorolign Kernels.
#@Tobias Hamp,Fabian Birzele,Fabian Buchwald,Stefan Kramer
#t2011
#cBioinformatics
#index2964222
#% 
#!
  
#*Statistical distribution of amino acid sequences: a proof of Darwinian evolution.
#@Krystian Eitner,Uwe Koch,Tomasz Gaweda,Jedrzej Marciniak
#t2010
#cBioinformatics
#index2964236
#% 
#!
  
#*Interoperability between phenotype and anatomy ontologies.
#@Robert Hoehndorf,Anika Oellrich,Dietrich Rebholz-Schuhmann
#t2010
#cBioinformatics
#index2964232
#% 
#!
  
#*Generalized random set framework for functional enrichment analysis using primary genomics datasets.
#@Johannes M. Freudenberg,Siva Sivaganesan,Mukta Phatak,Kaustubh Shinde,Mario Medvedovic
#t2011
#cBioinformatics
#index2964285
#% 
#!
  
#*Predicting drug sensitivity using Random Forests.
#@Gregory Riddick,Hua Song,Susie Ahn,Jennifer Walling,Diego Borges-Rivera,Wei Zhang,Howard A. Fine
#t2011
#cBioinformatics
#index2964296
#% 
#!
  
#*High-throughput prediction of protein antigenicity using protein microarray data.
#@Christophe N. Magnan,Michael Zeller,Matthew A. Kayala,Adam Vigil,Arlo Z. Randall,Philip L. Felgner,Pierre Baldi
#t2010
#cBioinformatics
#index2964229
#% 
#!
  
#*Algorithms for sorting unsigned linear genomes by the DCJ operations.
#@Haitao Jiang,Binhai Zhu,Daming Zhu
#t2011
#cBioinformatics
#index2964321
#% 
#!
  
#*High-quality annotation of promoter regions for 913 bacterial genomes.
#@Vetriselvi Rangannan,Manju Bansal
#t2010
#cBioinformatics
#index2964243
#% 
#!
  
#*Scoring-and-unfolding trimmed tree assembler: concepts, constructs and comparisons.
#@Giuseppe Narzisi,Bud Mishra
#t2011
#cBioinformatics
#index2964316
#% 
#!
  
#*Interrogating local population structure for fine mapping in genome-wide association studies.
#@Huaizhen Qin,Nathan Morris,Sun J. Kang,Mingyao Li,Bamidele Tayo,Helen Lyon,Joel Hirschhorn,Richard S. Cooper,Xiaofeng Zhu
#t2010
#cBioinformatics
#index2964262
#% 
#!
  
#*Accelerating reaction-diffusion simulations with general-purpose graphics processing units.
#@Matthias Vigelius,Aidan Lane,Bernd Meyer
#t2011
#cBioinformatics
#index2964310
#% 
#!
  
#*Identification of human-specific transcript variants induced by DNA insertions in the human genome.
#@Dong Seon Kim,Yoonsoo Hahn
#t2011
#cBioinformatics
#index2964287
#% 
#!
  
#*Anatomy of a hash-based long read sequence mapping algorithm for next generation DNA sequencing.
#@Sanchit Misra,Ankit Agrawal,Wei-keng Liao,Alok N. Choudhary
#t2011
#cBioinformatics
#index2964300
#% 
#!
  
#*Rseg - an R package to optimize segmentation of SNP array data.
#@Philippe Lamy,Carsten Wiuf,Torben F. Ørntoft,Claus L. Andersen
#t2011
#cBioinformatics
#index2964326
#% 
#!
  
#*Using bioinformatics to predict the functional impact of SNVs.
#@Melissa S. Cline,Rachel Karchin
#t2011
#cBioinformatics
#index2964349
#% 
#!
  
#*Functional integration of a metabolic network model and expression data without arbitrary thresholding.
#@Paul A. Jensen,Jason A. Papin
#t2011
#cBioinformatics
#index2964363
#% 
#!
  
#*Identifying cancer driver genes in tumor genome sequencing studies.
#@Ahrim Youn,Richard Simon
#t2011
#cBioinformatics
#index2964252
#% 
#!
  
#*Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array.
#@Lars Halvor Gidskehaug,Matthew Kent,Ben J. Hayes,Sigbjørn Lien
#t2011
#cBioinformatics
#index2964335
#% 
#!
  
#*SLIM: a sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures.
#@Hong-Qiang Wang,Lindsey K. Tuominen,Chung-Jui Tsai
#t2011
#cBioinformatics
#index2964298
#% 
#!
  
#*Variable selection for discriminant analysis with Markov random field priors for the analysis of microarray data.
#@Francesco C. Stingo,Marina Vannucci
#t2011
#cBioinformatics
#index2964324
#% 
#!
  
#*GPCRRD: G protein-coupled receptor spatial restraint database for 3D structure modeling and function annotation.
#@Jian Zhang,Yang Zhang
#t2010
#cBioinformatics
#index2964233
#% 
#!
  
#*Fast tomographic reconstruction on multicore computers.
#@Jose Ignacio Agulleiro Baldo,José-Jesús Fernández
#t2011
#cBioinformatics
#index2964364
#% 
#!
  
#*Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data.
#@Fernando García-Alcalde,Federico García-López,Joaquín Dopazo,Ana Conesa
#t2011
#cBioinformatics
#index2964273
#% 
#!
  
#*A dynamic data structure for flexible molecular maintenance and informatics.
#@Chandrajit L. Bajaj,Rezaul Alam Chowdhury,Muhibur Rasheed
#t2011
#cBioinformatics
#index2964288
#% 
#!
  
#*TE Displayer for post-genomic analysis of transposable elements.
#@Rebecca Rooke,Guojun Yang
#t2011
#cBioinformatics
#index2964299
#% 
#!
  
#*WIST: toolkit for rapid, customized LIMS development.
#@Y. Wayne Huang,Adam P. Arkin,John-Marc Chandonia
#t2011
#cBioinformatics
#index2964359
#% 
#!
  
#*Pre-calculated protein structure alignments at the RCSB PDB website.
#@Andreas Prlic,Spencer Bliven,Peter W. Rose,Wolfgang Bluhm,Chris Bizon,Adam Godzik,Philip E. Bourne
#t2010
#cBioinformatics
#index2964228
#% 
#!
  
#*A hybrid approach to extract protein-protein interactions.
#@Quoc-Chinh Bui,Sophia Katrenko,Peter M. A. Sloot
#t2011
#cBioinformatics
#index2964295
#% 
#!
  
#*W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data.
#@Xun Lan,Russell Bonneville,Jeff Apostolos,Wangcheng Wu,Victor X. Jin
#t2011
#cBioinformatics
#index2964323
#% 
#!
  
#*A performance enhanced PSI-BLAST based on hybrid alignment.
#@Yuheng Li,Nicholas Chia,Mario Lauria,Ralf Bundschuh
#t2011
#cBioinformatics
#index2964274
#% 
#!
  
#*Interactional and functional centrality in transcriptional co-expression networks.
#@Edi Prifti,Jean-Daniel Zucker,Karine Clément,Corneliu Henegar
#t2010
#cBioinformatics
#index2964237
#% 
#!
  
#*RNA-RNA interaction prediction based on multiple sequence alignments.
#@Andrew X. Li,Manja Marz,Jing Qin,Christian M. Reidys
#t2011
#cBioinformatics
#index2964338
#% 
#!
  
#*iMAT: an integrative metabolic analysis tool.
#@Hadas Zur,Eytan Ruppin,Tomer Shlomi
#t2010
#cBioinformatics
#index2964261
#% 
#!
  
#*von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models.
#@Ronan M. T. Fleming,Ines Thiele
#t2011
#cBioinformatics
#index2964279
#% 
#!
  
#*MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks.
#@Fabio Gori,Gianluigi Folino,Mike S. M. Jetten,Elena Marchiori
#t2011
#cBioinformatics
#index2964297
#% 
#!
  
#*GLay: community structure analysis of biological networks.
#@Gang Su,Allan Kuchinsky,John H. Morris,David J. States,Fan Meng
#t2010
#cBioinformatics
#index2964256
#% 
#!
  
#*Discovering homotypic binding events at high spatial resolution.
#@Yuchun Guo,Georgios Papachristoudis,Robert C. Altshuler,Georg K. Gerber,Tommi Jaakkola,David K. Gifford,Shaun Mahony
#t2010
#cBioinformatics
#index2964246
#% 
#!
  
#*Generation of a consensus protein domain dictionary.
#@R. Dustin Schaeffer,Amanda L. Jonsson,Andrew M. Simms,Valerie Daggett
#t2011
#cBioinformatics
#index2964283
#% 
#!
  
#*Bayesian ensemble methods for survival prediction in gene expression data.
#@Vinícius Bonato,Veerabhadran Baladandayuthapani,Bradley M. Broom,Erik P. Sulman,Kenneth D. Aldape,Kim-Anh Do
#t2011
#cBioinformatics
#index2964345
#% 
#!
  
#*MU2A - reconciling the genome and transcriptome to determine the effects of base substitutions.
#@Vijay Garla,Yong Kong,Sebastian Szpakowski,Michael Krauthammer
#t2011
#cBioinformatics
#index2964351
#% 
#!
  
#*Network-based comparison of temporal gene expression patterns.
#@Wei Huang,Xiaoyi Cao,Sheng Zhong
#t2010
#cBioinformatics
#index2964253
#% 
#!
  
#*Statistical analysis of the cancer cell's molecular entropy using high-throughput data.
#@Wessel N. van Wieringen,Aad van der Vaart
#t2011
#cBioinformatics
#index2964342
#% 
#!
  
#*PPO: Predictor for Prokaryotic Operons.
#@Li-Yeh Chuang,Jui-Hung Tsai,Cheng-Hong Yang
#t2010
#cBioinformatics
#index2964238
#% 
#!
  
#*Fast and efficient dynamic nested effects models.
#@Holger Fröhlich,Paurush Praveen,Achim Tresch
#t2011
#cBioinformatics
#index2964302
#% 
#!
  
#*Succinct data structures for assembling large genomes.
#@Thomas C. Conway,Andrew J. Bromage
#t2011
#cBioinformatics
#index2964333
#% 
#!
  
#*Improved predictions by Pcons.net using multiple templates.
#@Per Larsson,Marcin J. Skwark,Björn Wallner,Arne Elofsson
#t2011
#cBioinformatics
#index2964360
#% 
#!
  
#*Model quality assessment for membrane proteins.
#@Arjun Ray,Erik Lindahl,Björn Wallner
#t2010
#cBioinformatics
#index2964234
#% 
#!
  
#*Inference of gene networks - application to .
#@Darong Lai,Xinyi Yang,Gang Wu,Yuanhua Liu,Christine Nardini
#t2011
#cBioinformatics
#index2964307
#% 
#!
  
#*The uniqueome: a mappability resource for short-tag sequencing.
#@Ryan Koehler,Hadar Issac,Nicole Cloonan,Sean M. Grimmond
#t2011
#cBioinformatics
#index2964315
#% 
#!
  
#*NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads.
#@Gail L. Rosen,Erin R. Reichenberger,Aaron M. Rosenfeld
#t2011
#cBioinformatics
#index2964289
#% 
#!
  
#*Identification of protein complexes from co-immunoprecipitation data.
#@Guy Geva,Roded Sharan
#t2011
#cBioinformatics
#index2964271
#% 
#!
  
#*CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data.
#@Sergii Ivakhno,Tom Royce,Anthony J. Cox,Dirk J. Evers,R. Keira Cheetham,Simon Tavaré
#t2010
#cBioinformatics
#index2964245
#% 
#!
  
#*MSPocket: an orientation-independent algorithm for the detection of ligand binding pockets.
#@Hongbo Zhu,M. Teresa Pisabarro
#t2011
#cBioinformatics
#index2964354
#% 
#!
  
#*Evolutionary design principles and functional characteristics based on kingdom-specific network motifs.
#@Tae-Hwan Kim,Junil Kim,Pat Heslop-Harrison,Kwang-Hyun Cho
#t2011
#cBioinformatics
#index2964301
#% 
#!
  
#*Flapjack - graphical genotype visualization.
#@Iain Milne,Paul Shaw,Gordon Stephen,Micha Bayer,Linda Cardle,William T. B. Thomas,Andrew J. Flavell,David Marshall
#t2010
#cBioinformatics
#index2964227
#% 
#!
  
#*Pathway Activity Profiling (PAPi): from the metabolite profile to the metabolic pathway activity.
#@Raphael B. M. Aggio,Katya Ruggiero,Silas Granato Villas-Bôas
#t2010
#cBioinformatics
#index2964226
#% 
#!
  
#*Biological impact of missing-value imputation on downstream analyses of gene expression profiles.
#@Sunghee Oh,Dongwan D. Kang,Guy N. Brock,George C. Tseng
#t2011
#cBioinformatics
#index2964286
#% 
#!
  
#*MiRonTop: mining microRNAs targets across large scale gene expression studies.
#@Kevin Le Brigand,Karine Robbe-Sermesant,Bernard Mari,Pascal Barbry
#t2010
#cBioinformatics
#index2964264
#% 
#!
  
#*PriSM: a primer selection and matching tool for amplification and sequencing of viral genomes.
#@Qing Yu,Elizabeth M. Ryan,Todd M. Allen,Bruce W. Birren,Matthew R. Henn,Niall J. Lennon
#t2011
#cBioinformatics
#index2964308
#% 
#!
  
#*Prognostic transcriptional association networks: a new supervised approach based on regression trees.
#@Isabel A. Nepomuceno-Chamorro,Francisco Azuaje,Yvan Devaux,Petr V. Nazarov,Arnaud Muller,Jesús S. Aguilar-Ruiz,Daniel R. Wagner
#t2011
#cBioinformatics
#index2964318
#% 
#!
  
#*Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature.
#@Emily Doughty,Attila Kertész-Farkas,Olivier Bodenreider,Gary Thompson,Asa Adadey,Thomas A. Peterson,Maricel G. Kann
#t2011
#cBioinformatics
#index2964348
#% 
#!
  
#*Improving evolutionary models of protein interaction networks.
#@Todd A. Gibson,Debra Goldberg
#t2011
#cBioinformatics
#index2964329
#% 
#!
  
#*FILTREST3D: discrimination of structural models using restraints from experimental data.
#@Michal J. Gajda,Irina Tuszynska,Marta Kaczor,Anastasia Yu. Bakulina,Janusz M. Bujnicki
#t2010
#cBioinformatics
#index2964249
#% 
#!
  
#*Chembench: a cheminformatics workbench.
#@Theo Walker,Christopher M. Grulke,Diane Pozefsky,Alexander Tropsha
#t2010
#cBioinformatics
#index2964268
#% 
#!
  
#*A stochastic expectation and maximization algorithm for detecting quantitative trait-associated genes.
#@Haimao Zhan,Xin Chen,Shizhong Xu
#t2011
#cBioinformatics
#index2964282
#% 
#!
  
#*GimmeMotifs: a motif prediction pipeline for ChIP-sequencing experiments.
#@Simon J. van Heeringen,Gert Jan C. Veenstra
#t2011
#cBioinformatics
#index2964304
#% 
#!
  
#*OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data.
#@Tian Xia,John L. Van Hemert,Julie A. Dickerson
#t2010
#cBioinformatics
#index2964248
#% 
#!
  
#*Exploring metabolic pathways in genome-scale networks via generating flux modes.
#@A. Rezola,Luis F. de Figueiredo,M. Brock,J. Pey,Adam Podhorski,Christoph Wittmann,Stefan Schuster,Alexander Bockmayr,Francisco J. Planes
#t2011
#cBioinformatics
#index2964353
#% 
#!
  
#*dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks.
#@Peilin Jia,Siyuan Zheng,Jirong Long,Wei Zheng,Zhongming Zhao
#t2011
#cBioinformatics
#index2964291
#% 
#!
  
#*R/qtl: high-throughput multiple QTL mapping.
#@Danny Arends,Pjotr Prins,Ritsert C. Jansen,Karl W. Broman
#t2010
#cBioinformatics
#index2964239
#% 
#!
  
#*Protein Peeling 3D: new tools for analyzing protein structures.
#@Jean-Christophe Gelly,Alexandre G. de Brevern
#t2011
#cBioinformatics
#index2964272
#% 
#!
  
#*'Non-destructive' biocomputing security system based on gas-controlled biofuel cell and potentially used for intelligent medical diagnostics.
#@Ming Zhou,Xiliang Zheng,Jin Wang,Shaojun Dong
#t2011
#cBioinformatics
#index2964336
#% 
#!
  
#*ASSIMILATOR: a new tool to inform selection of associated genetic variants for functional studies.
#@Paul Martin,Anne Barton,Stephen Eyre
#t2011
#cBioinformatics
#index2964277
#% 
#!
  
#*GPU-BLAST: using graphics processors to accelerate protein sequence alignment.
#@Panagiotis D. Vouzis,Nikolaos V. Sahinidis
#t2011
#cBioinformatics
#index2964314
#% 
#!
  
#*Model-free unsupervised gene set screening based on information enrichment in expression profiles.
#@Atsushi Niida,Seiya Imoto,Rui Yamaguchi,Masao Nagasaki,André Fujita,Teppei Shimamura,Satoru Miyano
#t2010
#cBioinformatics
#index2964225
#% 
#!
  
#*Interactive microbial genome visualization with GView.
#@Aaron Petkau,Matthew Stuart-Edwards,Paul Stothard,Gary H. Van Domselaar
#t2010
#cBioinformatics
#index2964263
#% 
#!
  
#*Benchmarking the performance of human antibody gene alignment utilities using a 454 sequence dataset.
#@Katherine J. L. Jackson,Scott Boyd,Bruno A. Gaëta,Andrew M. Collins
#t2010
#cBioinformatics
#index2964258
#% 
#!
  
#*The SMARTCyp cytochrome P450 metabolism prediction server.
#@Patrik Rydberg,David E. Gloriam,Lars Olsen
#t2010
#cBioinformatics
#index2964267
#% 
#!
  
#*DROP: an SVM domain linker predictor trained with optimal features selected by random forest.
#@Teppei Ebina,Hiroyuki Toh,Yutaka Kuroda
#t2011
#cBioinformatics
#index2964330
#% 
#!
  
#*Cancer therapy design based on pathway logic.
#@Ritwik Layek,Aniruddha Datta,Michael L. Bittner,Edward R. Dougherty
#t2011
#cBioinformatics
#index2964356
#% 
#!
  
#*The necessity of adjusting tests of protein category enrichment in discovery proteomics.
#@Brenton Louie,Roger Higdon,Eugene Kolker
#t2010
#cBioinformatics
#index2964250
#% 
#!
  
#*When the Web meets the cell: using personalized PageRank for analyzing protein interaction networks.
#@Gábor Iván,Vince Grolmusz
#t2011
#cBioinformatics
#index2964339
#% 
#!
  
#*X-MATE: a flexible system for mapping short read data.
#@David L. A. Wood,Qinying Xu,John V. Pearson,Nicole Cloonan,Sean M. Grimmond
#t2011
#cBioinformatics
#index2964344
#% 
#!
  
#*Toward the estimation of the absolute quality of individual protein structure models.
#@Pascal Benkert,Marco Biasini,Torsten Schwede
#t2011
#cBioinformatics
#index2964334
#% 
#!
  
#*Efficient change point detection for genomic sequences of continuous measurements.
#@Vito M. R. Muggeo,Giada Adelfio
#t2011
#cBioinformatics
#index2964305
#% 
#!
  
#*Inverse perturbation for optimal intervention in gene regulatory networks.
#@Nidhal Bouaynaya,Roman Shterenberg,Dan Schonfeld
#t2011
#cBioinformatics
#index2964284
#% 
#!
  
#*VEGA: variational segmentation for copy number detection.
#@Sandro Morganella,Luigi Cerulo,Giuseppe Viglietto,Michele Ceccarelli
#t2010
#cBioinformatics
#index2964247
#% 
#!
  
#*Optimized data fusion for K-means Laplacian clustering.
#@Shi Yu,Xinhai Liu,Léon-Charles Tranchevent,Wolfgang Glänzel,Johan A. K. Suykens,Bart De Moor,Yves Moreau
#t2011
#cBioinformatics
#index2964269
#% 
#!
  
#*CellPublisher: a web platform for the intuitive visualization and sharing of metabolic, signalling and regulatory pathways.
#@Lope A. Flórez,Christoph R. Lammers,Raphael Michna,Jörg Stülke
#t2010
#cBioinformatics
#index2964266
#% 
#!
  
#*RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries.
#@Lukas Habegger,Andrea Sboner,Tara A. Gianoulis,Joel S. Rozowsky,Ashish Agarwal,Michael Snyder,Mark Gerstein
#t2011
#cBioinformatics
#index2964292
#% 
#!
  
#*PLEXY: efficient target prediction for box C/D snoRNAs.
#@Stephanie Kehr,Sebastian Bartschat,Peter F. Stadler,Hakim Tafer
#t2011
#cBioinformatics
#index2964303
#% 
#!
  
#*tracking microglia motility in 3D using a novel cosegmentation approach.
#@Hang Xiao,Ying Li,Jiulin Du,Axel Mosig
#t2011
#cBioinformatics
#index2964317
#% 
#!
  
#*++: a C++ objected-oriented algorithm for Bayesian stochastic search model exploration.
#@Leonardo Bottolo,Marc Chadeau-Hyam,David I. Hastie,Sarah R. Langley,Enrico Petretto,Laurence Tiret,David Tregouet,Sylvia Richardson
#t2011
#cBioinformatics
#index2964327
#% 
#!
  
#*PyETV: a PyMOL evolutionary trace viewer to analyze functional site predictions in protein complexes.
#@Rhonald C. Lua,Olivier Lichtarge
#t2010
#cBioinformatics
#index2964240
#% 
#!
  
#*Assigning duplication events to relative temporal scales in genome-wide studies.
#@Jaime Huerta-Cepas,Toni Gabaldón
#t2011
#cBioinformatics
#index2964280
#% 
#!
  
#*Differential effects of chromatin regulators and transcription factors on gene regulation: a nucleosomal perspective.
#@Dong Dong,Xiaojian Shao,Zhaolei Zhang
#t2011
#cBioinformatics
#index2964313
#% 
#!
  
#*Principal network analysis: identification of subnetworks representing major dynamics using gene expression data.
#@Yongsoo Kim,Taek-Kyun Kim,Yungu Kim,Jiho Yoo,Sungyong You,Inyoul Y. Lee,George Carlson,Leroy Hood,Seungjin Choi,Daehee Hwang
#t2011
#cBioinformatics
#index2964367
#% 
#!
  
#*New approach for segmentation and quantification of two-dimensional gel electrophoresis images.
#@António dos Anjos,Anders L. B. Møller,Bjarne K. Ersbøll,Christine Finnie,Hamid Shahbazkia
#t2011
#cBioinformatics
#index2964341
#% 
#!
  
#*A classification model for G-to-A hypermutation in hepatitis B virus ultra-deep pyrosequencing reads.
#@Elizabeth C. Reuman,Severine Margeridon-Thermet,Harrison B. Caudill,Tommy F. Liu,Katyna Borroto-Esoda,Evguenia S. Svarovskaia,Susan P. Holmes,Robert W. Shafer
#t2010
#cBioinformatics
#index2964255
#% 
#!
  
#*SAMStat: monitoring biases in next generation sequencing data.
#@Timo Lassmann,Yoshihide Hayashizaki,Carsten O. Daub
#t2011
#cBioinformatics
#index2964270
#% 
#!
  
#*Analyzing marginal cases in differential shotgun proteomics.
#@Paulo C. Carvalho,Juliana S. G. Fischer,Jonas Perales,John R. Yates III,Valmir C. Barbosa,Elias Bareinboim
#t2011
#cBioinformatics
#index2964306
#% 
#!
  
#*Discovering approximate-associated sequence patterns for protein-DNA interactions.
#@Tak-Ming Chan,Ka-Chun Wong,Kin-Hong Lee,Man Hon Wong,Chi-Kong Lau,Stephen Kwok-Wing Tsui,Kwong-Sak Leung
#t2011
#cBioinformatics
#index2964337
#% 
#!
  
#*Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization.
#@Valentina Boeva,Andrei Zinovyev,Kevin Bleakley,Jean-Philippe Vert,Isabelle Janoueix-Lerosey,Olivier Delattre,Emmanuel Barillot
#t2011
#cBioinformatics
#index2964311
#% 
#!
  
#*Scaffolding pre-assembled contigs using SSPACE.
#@Marten Boetzer,Christiaan V. Henkel,Hans J. Jansen,Derek Butler,Walter Pirovano
#t2011
#cBioinformatics
#index2964328
#% 
#!
  
#*Cytoscape 2.8: new features for data integration and network visualization.
#@Michael E. Smoot,Keiichiro Ono,Johannes Ruscheinski,Peng-Liang Wang,Trey Ideker
#t2011
#cBioinformatics
#index2964293
#% 
#!
  
#*Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution.
#@Leonard Apeltsin,John H. Morris,Patricia C. Babbitt,Thomas E. Ferrin
#t2011
#cBioinformatics
#index2964331
#% 
#!
  
#*The Bayesian lasso for genome-wide association studies.
#@Jiahan Li,Kiranmoy Das,Guifang Fu,Runze Li,Rongling Wu
#t2011
#cBioinformatics
#index2964320
#% 
#!
  
#*Open source platform for the execution and analysis of mechanical refolding experiments.
#@Daniel Aioanei,Marco Brucale,Bruno Samorì
#t2011
#cBioinformatics
#index2964368
#% 
#!
  
#*maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences.
#@Peter Menzel,Peter F. Stadler,Jan Gorodkin
#t2011
#cBioinformatics
#index2964319
#% 
#!
  
#*Improved performance on high-dimensional survival data by application of Survival-SVM.
#@Vanya Van Belle,Kristiaan Pelckmans,Sabine Van Huffel,Johan A. K. Suykens
#t2011
#cBioinformatics
#index2964278
#% 
#!
  
#*SmashCell: a software framework for the analysis of single-cell amplified genome sequences.
#@Eoghan D. Harrington,Manimozhiyan Arumugam,Jeroen Raes,Peer Bork,David A. Relman
#t2010
#cBioinformatics
#index2964265
#% 
#!
  
#*phangorn: phylogenetic analysis in R.
#@Klaus Peter Schliep
#t2011
#cBioinformatics
#index2964355
#% 
#!
  
#*A regression framework incorporating quantitative and negative interaction data improves quantitative prediction of PDZ domain-peptide interaction from primary sequence.
#@Xiaojian Shao,Chris S. H. Tan,Courtney Voss,Shawn S. C. Li,Naiyang Deng,Gary D. Bader
#t2011
#cBioinformatics
#index2964350
#% 
#!
  
#*Characterizing the regularity of tetrahedral packing motifs in protein tertiary structure.
#@Ryan Day,Kristin P. Lennox,David B. Dahl,Marina Vannucci,Jerry Tsai
#t2010
#cBioinformatics
#index2964260
#% 
#!
  
#*SPLATCHE2: a spatially explicit simulation framework for complex demography, genetic admixture and recombination.
#@Nicolas Ray,Mathias Currat,Matthieu Foll,Laurent Excoffier
#t2010
#cBioinformatics
#index2964241
#% 
#!
  
#*SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing.
#@Emese Meglécz,Sylvain Piry,Erick Desmarais,Maxime Galan,André Gilles,Emmanuel Guivier,Nicolas Pech,Jean-François Martin
#t2011
#cBioinformatics
#index2964223
#% 
#!
  
#*GSearcher: Agile Attribute Querying for Biological Networks.
#@Gang Su,Brian D. Athey,Fan Meng
#t2010
#cBioinformatics
#index2964251
#% 
#!
  
#*Target-align: a tool for plant microRNA target identification.
#@Fuliang Xie,Baohong Zhang
#t2010
#cBioinformatics
#index2964242
#% 
#!
  
#*Alignment-free estimation of nucleotide diversity.
#@Bernhard Haubold,Floyd A. Reed,Peter Pfaffelhuber
#t2011
#cBioinformatics
#index2964322
#% 
#!
  
#*PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences.
#@Stefan E. Seemann,Andreas S. Richter,Tanja Gesell,Rolf Backofen,Jan Gorodkin
#t2011
#cBioinformatics
#index2964224
#% 
#!
  
#*Identifying functional miRNA-mRNA regulatory modules with correspondence latent dirichlet allocation.
#@Bing Liu,Lin Liu,Anna Tsykin,Gregory J. Goodall,Jeffrey E. Green,Min Zhu,Chang-Hee Kim,Jiuyong Li
#t2010
#cBioinformatics
#index2964294
#% 
#!
  
#*On safari to Random Jungle: a fast implementation of Random Forests for high-dimensional data.
#@Daniel F. Schwarz,Inke R. König,Andreas Ziegler
#t2011
#cBioinformatics
#index2964361
#% 
#!
  
#*MASISH: a database for gene expression in maize seeds.
#@M. Miquel,I. López-Ribera,M. Ràmia,Sònia Casillas,Antonio Barbadilla,C. M. Vicient
#t2011
#cBioinformatics
#index2964343
#% 
#!
  
#*Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq.
#@Zhengpeng Wu,Xi Wang,Xuegong Zhang
#t2011
#cBioinformatics
#index2964358
#% 
#!
  
#*Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data.
#@Jürgen Hartler,Martin Trötzmüller,Chandramohan Chitraju,Friedrich Spener,Harald C. Köfeler,Gerhard G. Thallinger
#t2011
#cBioinformatics
#index2964365
#% 
#!
  
#*SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks.
#@Albert Gevorgyan,Michael E. Bushell,Claudio Avignone-Rossa,Andrzej M. Kierzek
#t2011
#cBioinformatics
#index2964346
#% 
#!
  
#*Mugsy: fast multiple alignment of closely related whole genomes.
#@Samuel V. Angiuoli,Steven L. Salzberg
#t2011
#cBioinformatics
#index2964332
#% 
#!
  
#*Bayesian sampling of genomic rearrangement scenarios via double cut and join.
#@István Miklós,Eric Tannier
#t2010
#cBioinformatics
#index2964257
#% 
#!
  
#*Real-world comparison of CPU and GPU implementations of SNPrank: a network analysis tool for GWAS.
#@Nicholas A. Davis,Ahwan Pandey,B. A. McKinney
#t2011
#cBioinformatics
#index2964312
#% 
#!
  
#*A computationally efficient modular optimal discovery procedure.
#@Sangsoon Woo,Jeffrey T. Leek,John D. Storey
#t2011
#cBioinformatics
#index2964347
#% 
#!
  
#*The GMOD Drupal Bioinformatic Server Framework.
#@Alexie Papanicolaou,David G. Heckel
#t2010
#cBioinformatics
#index2964231
#% 
#!
  
#*ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations.
#@Mark H. Wright,Chih-Wei Tung,Keyan Zhao,Andy Reynolds,Susan McCouch,Carlos Bustamante
#t2010
#cBioinformatics
#index2964235
#% 
#!
  
#*A variable selection method for genome-wide association studies.
#@Qianchuan He,Dan-Yu Lin
#t2011
#cBioinformatics
#index2964221
#% 
#!
  
#*GAMES identifies and annotates mutations in next-generation sequencing projects.
#@Maria Elena Sana,Maria Iascone,Daniela Marchetti,Jeff Palatini,Marco Galasso,Stefano Volinia
#t2011
#cBioinformatics
#index2964275
#% 
#!
  
#*ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping.
#@Shao-Ke Lou,Bing Ni,Leung-Yau Lo,Stephen Kwok-Wing Tsui,Ting-Fung Chan,Kwong-Sak Leung
#t2011
#cBioinformatics
#index2964325
#% 
#!
  
#*SAIL - a software system for sample and phenotype availability across biobanks and cohorts.
#@Mikhail Gostev,Julio Fernandez-Banet,Johan Rung,Joern Dietrich,Inga Prokopenko,Samuli Ripatti,Mark I. McCarthy,Alvis Brazma,Maria Krestyaninova
#t2011
#cBioinformatics
#index2964366
#% 
#!
  
#*SlideSort: all pairs similarity search for short reads.
#@Kana Shimizu,Koji Tsuda
#t2011
#cBioinformatics
#index2964352
#% 
#!
  
#*PE-Assembler: assembler using short paired-end reads.
#@Pramila Nuwantha Ariyaratne,Wing-Kin Sung
#t2011
#cBioinformatics
#index2964309
#% 
#!
  
#*HiTEC: accurate error correction in high-throughput sequencing data.
#@Lucian Ilie,Farideh Fazayeli,Silvana Ilie
#t2011
#cBioinformatics
#index2964340
#% 
#!
  
#*QuACN: an R package for analyzing complex biological networks quantitatively.
#@Laurin A. J. Mueller,Karl G. Kugler,Andreas Dander,Armin Graber,Matthias Dehmer
#t2011
#cBioinformatics
#index2964290
#% 
#!
  
#*Automated construction and testing of multi-locus gene-gene associations.
#@Ryan Abo,Stacey Knight,Alun Thomas,Nicola J. Camp
#t2011
#cBioinformatics
#index2964276
#% 
#!
  
#*Automated analysis of information processing, kinetic independence and modular architecture in biochemical networks using MIDIA.
#@Clive G. Bowsher
#t2011
#cBioinformatics
#index2964357
#% 
#!
  
#*State reduction for network intervention in probabilistic Boolean networks.
#@Xiaoning Qian,Noushin Ghaffari,Ivan Ivanov,Edward R. Dougherty
#t2010
#cBioinformatics
#index2964230
#% 
#!
  
#*Identification of subfamily-specific sites based on active sites modeling and clustering.
#@Raquel C. de Melo-Minardi,Karine Bastard,François Artiguenave
#t2010
#cBioinformatics
#index2964244
#% 
#!
  
#*SmashCommunity: a metagenomic annotation and analysis tool.
#@Manimozhiyan Arumugam,Eoghan D. Harrington,Konrad U. Foerstner,Jeroen Raes,Peer Bork
#t2010
#cBioinformatics
#index2964254
#% 
#!
  
#*Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications.
#@Frank-Michael Schleif,T. Riemer,U. Börner,L. Schnapka-Hille,M. Cross
#t2011
#cBioinformatics
#index2964362
#% 
#!
  
#*SPHINX - an algorithm for taxonomic binning of metagenomic sequences.
#@Monzoorul Haque Mohammed,Tarini Shankar Ghosh,Nitin Kumar Singh,Sharmila S. Mande
#t2011
#cBioinformatics
#index2964281
#% 
#!
  
#*Statistical confidence measures for genome maps: application to the validation of genome assemblies.
#@Bertrand Servin,Simon de Givry,Thomas Faraut
#t2010
#cBioinformatics
#index2964259
#% 
#!
  
#*Study on Effects of Microorganism in Depolymerization Process of Xenobiotic Polymers by Modeling and Simulaton.
#@Masaji Watanabe,Fusako Kawai
#t2010
#cBioinformatics
#index3031695
#% 
#!
  
#*ReHap: An Integrated System for the Haplotype Assembly Problem from Shotgun Sequencing Data.
#@Filippo Geraci,Marco Pellegrini
#t2010
#cBioinformatics
#index3031714
#% 
#!
  
#*A Simple Analytic Approach for Tracking Retinal Vessels and Measuring their Diameters.
#@Zafer Yavuz,Cevat Ikibas,Cemal Köse
#t2010
#cBioinformatics
#index3031691
#% 
#!
  
#*Multivariate Study of AChEIs Molecules - Mapping Pharmacophoric Profile of AChEIs Via PCA.
#@Érica Cristina Moreno Nascimento,João Batista Lopes Martins
#t2010
#cBioinformatics
#index3031697
#% 
#!
  
#*Recursive Bayesian Nets for Prediction, Explanation and Control in Cancer Science - A Position Paper.
#@Lorenzo Casini,Phyllis McKay Illari,Federica Russo,Jon Williamson
#t2010
#cBioinformatics
#index3031708
#% 
#!
  
#*In Silico Study of Expression Profiles Correlation between MicroRNAs and Cancerous Genes.
#@Ka-Lok Ng,Chia-Wei Weng
#t2010
#cBioinformatics
#index3031456
#% 
#!
  
#*Modeling and Analysis of Bird Flu Outbreak within a Poultry Farm.
#@Tertia Delia Nova,Herman Mawengkang,Masaji Watanabe
#t2010
#cBioinformatics
#index3031711
#% 
#!
  
#*On the Gradient-based Algorithm for Matrix Factorization Applied to Dimensionality Reduction.
#@Vladimir Nikulin,Geoffrey J. McLachlan
#t2010
#cBioinformatics
#index3031682
#% 
#!
  
#*Distributed Frequency Sorting in Spectral Video Analysis of DNA Sequences.
#@Anca I. D. Bucur,Jasper van Leeuwen,Nevenka Dimitrova
#t2010
#cBioinformatics
#index3031698
#% 
#!
  
#*Proteins Pockets Analysis and Description.
#@Virginio Cantoni,Riccardo Gatti,Luca Lombardi
#t2010
#cBioinformatics
#index3031683
#% 
#!
  
#*Linear-time Matching of Position Weight Matrices.
#@Nikola Stojanovic
#t2010
#cBioinformatics
#index3031707
#% 
#!
  
#*HOLY-II: Improved Hierarchically Organized Layout for Visualization of Biochemical Complex Pathways.
#@Jyh-Jong Tsay,Bo-Liang Wu,Guo-Gen Huang
#t2010
#cBioinformatics
#index3031712
#% 
#!
  
#*Detection of Normality/Pathology on Chest Radiographs using LBP.
#@Juan Manuel Carrillo-de-Gea,Ginés García-Mateos
#t2010
#cBioinformatics
#index3031706
#% 
#!
  
#*Estimate Vigilance in Driving Simulation based on Detection of Light Drowsiness.
#@Hong-Jun Liu,Qing-Sheng Ren,Hong-Tao Lu
#t2010
#cBioinformatics
#index3031688
#% 
#!
  
#*Reaction Kernels - Structured Output Prediction Approaches for Novel Enzyme Function.
#@Katja Astikainen,Esa Pitkänen,Juho Rousu,Liisa Holm,Sándor Szedmák
#t2010
#cBioinformatics
#index3031680
#% 
#!
  
#*Structural Motif Enumeration in Transcriptional Regulation Networks.
#@Claire Luciano,Chun-Hsi Huang
#t2010
#cBioinformatics
#index3031699
#% 
#!
  
#*Co-evolution in HIV Enzymes.
#@Patrick Boba,Philipp Weil,Franziska Hoffgaard,Kay Hamacher
#t2010
#cBioinformatics
#index3031709
#% 
#!
  
#*Towards the Evolution of Legacy Applications to Multicore Systems - Experiences Parallelizing R.
#@Gonzalo Vera,Remo Suppi
#t2010
#cBioinformatics
#index3031681
#% 
#!
  
#*Segmentation of SES for Protein Structure Analysis.
#@Virginio Cantoni,Riccardo Gatti,Luca Lombardi
#t2010
#cBioinformatics
#index3031705
#% 
#!
  
#*Improving Search for Low Energy Protein Structures with an Iterative Niche Genetic Algorithm.
#@Glennie Helles
#t2010
#cBioinformatics
#index3031687
#% 
#!
  
#*BIOINFORMATICS 2010 - Proceedings of the First International Conference on Bioinformatics, Valencia, Spain, January 20-23, 2010
#@Ana L. N. Fred,Joaquim Filipe,Hugo Gamboa
#t2010
#cBioinformatics
#index3031676
#% 
#!
  
#*PICNIC - Portal-based Platform for MRI Processing of Neurodegenerative Diseases.
#@J. Delgado-Mengual,Y. Vives-Gilabert,A. Sainz-Ruiz,M. Delfino-Reznicek,B. Gómez-Ansón
#t2010
#cBioinformatics
#index3031710
#% 
#!
  
#*Prognosis of Breast Cancer based on a Fuzzy Classification Method.
#@Lyamine Hedjazi,Tatiana Kempowsky-Hamon,Marie-Véronique Le Lann,Joseph Aguilar-Martin
#t2010
#cBioinformatics
#index3031686
#% 
#!
  
#*Coding Biological Systems in a Stochastic Framework - The Case Study of Budding Yeast Cell Cycle.
#@Alida Palmisano
#t2010
#cBioinformatics
#index3031700
#% 
#!
  
#*Protein Domain Phylogenies - Information Theory and Evolutionary Dynamics.
#@Kay Hamacher
#t2010
#cBioinformatics
#index3031715
#% 
#!
  
#*Methylmalonic Acidurias - mut/mut and cblC Defects in Portuguese Population.
#@Célia Nogueira,Marta Marques,Laura Vilarinho
#t2010
#cBioinformatics
#index3031704
#% 
#!
  
#*Shannon Entropy and Fractal Analysis for the 16S Ribosomal RNA and COX2 mt-DNA Sequences in Primates Including Neanderthal.
#@N. Gadura,Todd Holden,G. Tremberger Jr.,E. Cheung,P. Schneider,D. Lieberman,T. Cheung
#t2010
#cBioinformatics
#index3031694
#% 
#!
  
#*Statistical Analysis of Biomolecular Data using UNICORE Workflows.
#@Marcelina Borcz,Rafal Kluszczynski,Piotr Bala
#t2010
#cBioinformatics
#index3031690
#% 
#!
  
#*The Plasmodium Glutathione S-transferase - Bioinformatics Characterization and Classification into the Sigma Class.
#@Emilee E. Colón-Lorenzo,Adelfa E. Serrano,Hugh B. Nicholas Jr.,Troy Wymore,Alexander Ropelewski,Ricardo González-Méndez
#t2010
#cBioinformatics
#index3031701
#% 
#!
  
#*Supporting Scientific Biological Applications with Seamless Database Access in Interoperable e-Science Infrastructures.
#@Sonja Holl,Morris Riedel,Bastian Demuth,Mathilde Romberg,Achim Streit
#t2010
#cBioinformatics
#index3031679
#% 
#!
  
#*Systematic Position and Phylogenetic Relationships of the Cyclophyllidean Cestodes - An In-silico Study using ITS2 rDNA and Sequence-structure Alignment.
#@Veena Tandon,Devendra Kumar Biswal,Pramod Kumar Prasad,Chenkual Malsawmtluangi
#t2010
#cBioinformatics
#index3031689
#% 
#!
  
#*Improved Disease Outcome Prediction based on Microarray and Clinical Data Combination and Pre-validation.
#@Jana Silhavá,Pavel Smrz
#t2010
#cBioinformatics
#index3031678
#% 
#!
  
#*CELLmicrocosmos 4.1 - An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.
#@Björn Sommer,Jörn Künsemöller,Norbert Sand,Arne Husemann,Madis Rumming,Benjamin Kormeier
#t2010
#cBioinformatics
#index3031693
#% 
#!
  
#*Protein Folding, Molecular Docking, Drug Design - The Role of the Derivative "Drift" in Complex Systems Dynamics.
#@Corrado Giannantoni
#t2010
#cBioinformatics
#index3031702
#% 
#!
  
#*Parallel Calculation of Subgraph Census in Biological Networks.
#@Pedro Ribeiro,Fernando Silva,Luís Lopes
#t2010
#cBioinformatics
#index3031684
#% 
#!
  
#*Conceptual Modeling of Human Genome Mutations - A Dichotomy Between what we Have and What we Should Have.
#@M. Ángeles Pastor,Verónica Burriel,Óscar Pastor
#t2010
#cBioinformatics
#index3031692
#% 
#!
  
#*PMSGA: A Fast DNA Fragment Assembler.
#@Juho Mäkinen,Jorma Tarhio,Sami Khuri
#t2010
#cBioinformatics
#index3031696
#% 
#!
  
#*Building Very Large Neighbour-joining Trees.
#@Martin Simonsen,Thomas Mailund,Christian N. S. Pedersen
#t2010
#cBioinformatics
#index3031703
#% 
#!
  
#*A Subspace Method for the Detection of Transcription Factor Binding Sites.
#@Erola Pairo,Santiago Marco,Alexandre Perera
#t2010
#cBioinformatics
#index3031677
#% 
#!
  
#*Structure Prediction of Simple Non-standard Pseudoknot.
#@Thomas K. F. Wong,Siu-Ming Yiu
#t2010
#cBioinformatics
#index3031713
#% 
#!
  
#*Convex Shape Retrieval from Edge Maps by the use of an Evolutionary Algorithm.
#@Alexander E. Nezhinsky,Johannes W. Kruisselbrink,Fons J. Verbeek
#t2010
#cBioinformatics
#index3031685
#% 
#!
  
#*Tabix: fast retrieval of sequence features from generic TAB-delimited files.
#@Heng Li
#t2011
#cBioinformatics
#index3061724
#% 
#!
  
#*Gene List significance at-a-glance with GeneValorization.
#@Bryan Brancotte,Anne Biton,Isabelle Bernard-Pierrot,François Radvanyi,Fabien Reyal,Sarah Cohen Boulakia
#t2011
#cBioinformatics
#index3061792
#% 
#!
  
#*Adjustment for local ancestry in genetic association analysis of admixed populations.
#@Xuexia Wang,Xiaofeng Zhu,Huaizhen Qin,Richard S. Cooper,Warren J. Ewens,Chun Li,Mingyao Li
#t2011
#cBioinformatics
#index3061729
#% 
#!
  
#*Computational refinement of post-translational modifications predicted from tandem mass spectrometry.
#@Clement Chung,Jian Liu,Andrew Emili,Brendan J. Frey
#t2011
#cBioinformatics
#index3061762
#% 
#!
  
#*CMView: Interactive contact map visualization and analysis.
#@Corinna Vehlow,Henning Stehr,Matthias Winkelmann,Jose M. Duarte,Lars Petzold,Juliane Dinse,Michael Lappe
#t2011
#cBioinformatics
#index3061926
#% 
#!
  
#*On the organization of bioinformatics core services in biology-based research institutes.
#@Olli-P. Kallioniemi,Lodewyk Wessels,Alfonso Valencia
#t2011
#cBioinformatics
#index3061908
#% 
#!
  
#*CytoModeler: a tool for bridging large-scale network analysis and dynamic quantitative modeling.
#@Tian Xia,John L. Van Hemert,Julie A. Dickerson
#t2011
#cBioinformatics
#index3061921
#% 
#!
  
#*OTUbase: an R infrastructure package for operational taxonomic unit data.
#@Daniel Beck,Matt Settles,James A. Foster
#t2011
#cBioinformatics
#index3061943
#% 
#!
  
#*sc-PDB: a database for identifying variations and multiplicity of 'druggable' binding sites in proteins.
#@Jamel Meslamani,Didier Rognan,Esther Kellenberger
#t2011
#cBioinformatics
#index3061871
#% 
#!
  
#*All-atom knowledge-based potential for RNA structure prediction and assessment.
#@Emidio Capriotti,Tomás Norambuena,Marc A. Martí-Renom,Francisco Melo
#t2011
#cBioinformatics
#index3061834
#% 
#!
  
#*VIZ-GRAIL: visualizing functional connections across disease loci.
#@Soumya Raychaudhuri
#t2011
#cBioinformatics
#index3061917
#% 
#!
  
#*PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya.
#@Xuejian Xiong,Hongyan Song,Tuan On,Lucas Lochovsky,Nicholas J. Provart,John Parkinson
#t2011
#cBioinformatics
#index3061789
#% 
#!
  
#*BamTools: a C++ API and toolkit for analyzing and managing BAM files.
#@Derek W. Barnett,Erik K. Garrison,Aaron R. Quinlan,Michael Strömberg,Gabor T. Marth
#t2011
#cBioinformatics
#index3061971
#% 
#!
  
#*eGOB: eukaryotic Gene Order Browser.
#@Marcela Dávila López,Tore Samuelsson
#t2011
#cBioinformatics
#index3061852
#% 
#!
  
#*COSINE: COndition-SpecIfic sub-NEtwork identification using a global optimization method.
#@Haisu Ma,Eric E. Schadt,Lee M. Kaplan,Hongyu Zhao
#t2011
#cBioinformatics
#index3061839
#% 
#!
  
#*Flower: extracting information from pyrosequencing data.
#@Ketil Malde
#t2011
#cBioinformatics
#index3061811
#% 
#!
  
#*Dalliance: interactive genome viewing on the web.
#@Thomas A. Down,Matias Piipari,Tim J. P. Hubbard
#t2011
#cBioinformatics
#index3061763
#% 
#!
  
#*'Sciencenet' - towards a global search and share engine for all scientific knowledge.
#@Dominic S. Lütjohann,Asmi H. Shah,Michael P. Christen,Florian Richter,Karsten Knese,Urban Liebel
#t2011
#cBioinformatics
#index3061957
#% 
#!
  
#*A method for identifying haplotypes carrying the causative allele in positive natural selection and genome-wide association studies.
#@Rick Twee-Hee Ong,Xuanyao Liu,Wan-Ting Poh,Xueling Sim,Kee Seng Chia,Yik-Ying Teo
#t2011
#cBioinformatics
#index3061780
#% 
#!
  
#*Length bias correction for RNA-seq data in gene set analyses.
#@Liyan Gao,Zhide Fang,Kui Zhang,Degui Zhi,Xiangqin Cui
#t2011
#cBioinformatics
#index3061752
#% 
#!
  
#*SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models.
#@Zhike Zi
#t2011
#cBioinformatics
#index3061801
#% 
#!
  
#*Faster exact maximum parsimony search with XMP.
#@W. Timothy J. White,Barbara R. Holland
#t2011
#cBioinformatics
#index3061895
#% 
#!
  
#*Condensing biomedical journal texts through paragraph ranking.
#@Jung-Hsien Chiang,Heng-Hui Liu,Yi-Ting Huang
#t2011
#cBioinformatics
#index3061838
#% 
#!
  
#*FIMO: scanning for occurrences of a given motif.
#@Charles E. Grant,Timothy L. Bailey,William Stafford Noble
#t2011
#cBioinformatics
#index3061794
#% 
#!
  
#*Comments on 'Bayesian variable selection for disease classification using gene expression data'.
#@Meïli C. Baragatti,Denys Pommeret
#t2011
#cBioinformatics
#index3061856
#% 
#!
  
#*GeCo++: a C++ library for genomic features computation and annotation in the presence of variants.
#@Matteo Cereda,Manuela Sironi,Matteo Cavalleri,Uberto Pozzoli
#t2011
#cBioinformatics
#index3061829
#% 
#!
  
#*ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins.
#@Kamil Tamiola,Frans A. A. Mulder
#t2011
#cBioinformatics
#index3061805
#% 
#!
  
#*PiNGO: a Cytoscape plugin to find candidate genes in biological networks.
#@Michael E. Smoot,Keiichiro Ono,Trey Ideker,Steven Maere
#t2011
#cBioinformatics
#index3061809
#% 
#!
  
#*MEME-ChIP: motif analysis of large DNA datasets.
#@Philip Machanick,Timothy L. Bailey
#t2011
#cBioinformatics
#index3061970
#% 
#!
  
#*Cobweb: a Java applet for network exploration and visualisation.
#@Joachim von Eichborn,Philip E. Bourne,Robert Preissner
#t2011
#cBioinformatics
#index3061942
#% 
#!
  
#*Defining an informativeness metric for clustering gene expression data.
#@Jessica C. Mar,Christine A. Wells,John Quackenbush
#t2011
#cBioinformatics
#index3061870
#% 
#!
  
#*Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences.
#@Zhenjiang Xu,David H. Mathews
#t2011
#cBioinformatics
#index3061747
#% 
#!
  
#*GOSSIP: a method for fast and accurate global alignment of protein structures.
#@Ilona Kifer,Ruth Nussinov,Haim J. Wolfson
#t2011
#cBioinformatics
#index3061810
#% 
#!
  
#*A probabilistic model of nuclear import of proteins.
#@Ahmed M. Mehdi,Muhammad Shoaib B. Sehgal,Bostjan Kobe,Timothy L. Bailey,Mikael Bodén
#t2011
#cBioinformatics
#index3061847
#% 
#!
  
#*Normalizing bead-based microRNA expression data: a measurement error model-based approach.
#@Bin Wang,Xiao-Feng Wang,Yaguang Xi
#t2011
#cBioinformatics
#index3061916
#% 
#!
  
#*Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies.
#@Andrew E. Teschendorff,Joanna Zhuang,Martin Widschwendter
#t2011
#cBioinformatics
#index3061929
#% 
#!
  
#*ACT: aggregation and correlation toolbox for analyses of genome tracks.
#@Justin Jee,Joel S. Rozowsky,Kevin Y. Yip,Lucas Lochovsky,Robert Bjornson,Guoneng Zhong,Zhengdong D. Zhang,Yutao Fu,Jie Wang,Zhiping Weng,Mark Gerstein
#t2011
#cBioinformatics
#index3061844
#% 
#!
  
#*Recovering key biological constituents through sparse representation of gene expression.
#@Yosef Prat,Menachem Fromer,Nathan Linial,Michal Linial
#t2011
#cBioinformatics
#index3061733
#% 
#!
  
#*Comparative visualization of genetic and physical maps with Strudel.
#@Micha Bayer,Iain Milne,Gordon Stephen,Paul Shaw,Linda Cardle,Frank Wright,David Marshall
#t2011
#cBioinformatics
#index3061758
#% 
#!
  
#*PrimerProspector: design and taxonomic analysis of barcoded polymerase chain reaction primers.
#@William A. Walters,J. Gregory Caporaso,Christian L. Lauber,Donna Berg-Lyons,Noah Fierer,Rob Knight
#t2011
#cBioinformatics
#index3061867
#% 
#!
  
#*CNAmet: an R package for integrating copy number, methylation and expression data.
#@Riku Louhimo,Sampsa Hautaniemi
#t2011
#cBioinformatics
#index3061769
#% 
#!
  
#*Comparison of global tests for functional gene sets in two-group designs and selection of potentially effect-causing genes.
#@Klaus Jung,Benjamin Becker,Edgar Brunner,Tim Beißbarth
#t2011
#cBioinformatics
#index3061894
#% 
#!
  
#*Automated analysis of biological oscillator models using mode decomposition.
#@Tomasz Konopka
#t2011
#cBioinformatics
#index3061819
#% 
#!
  
#*DDN: a caBIG analytical tool for differential network analysis.
#@Bai Zhang,Ye Tian,Lu Jin,Huai Li,Ie-Ming Shih,Subha Madhavan,Robert Clarke,Eric P. Hoffman,Jianhua Xuan,Leena Hilakivi-Clarke,Yue Wang
#t2011
#cBioinformatics
#index3061822
#% 
#!
  
#*MRSD: a web server for Metabolic Route Search and Design.
#@Deguo Xia,Haoran Zheng,Zhiqiang Liu,Guisheng Li,Jinlong Li,Jiong Hong,Kai Zhao
#t2011
#cBioinformatics
#index3061935
#% 
#!
  
#*GBOOST: a GPU-based tool for detecting gene-gene interactions in genome-wide case control studies.
#@Ling Sing Yung,Can Yang,Xiang Wan,Weichuan Yu
#t2011
#cBioinformatics
#index3061833
#% 
#!
  
#*Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions.
#@Christoph Hafemeister,Ivan G. Costa,Alexander Schönhuth,Alexander Schliep
#t2011
#cBioinformatics
#index3061816
#% 
#!
  
#*A qualitative continuous model of cellular auxin and brassinosteroid signaling and their crosstalk.
#@Martial Sankar,Karen S. Osmont,Jakub Rolcik,Bojan Gujas,Danuse Tarkowska,Miroslav Strnad,Ioannis Xenarios,Christian S. Hardtke
#t2011
#cBioinformatics
#index3061905
#% 
#!
  
#*Assigning spectrum-specific -values to protein identifications by mass spectrometry.
#@Victor Spirin,Alexander Shpunt,Jan Seebacher,Marc Gentzel,Andrej Shevchenko,Steven Gygi,Shamil R. Sunyaev
#t2011
#cBioinformatics
#index3061845
#% 
#!
  
#*libfbi: a C++ implementation for fast box intersection and application to sparse mass spectrometry data.
#@Marc Kirchner,Buote Xu,Hanno Steen,Judith A. J. Steen
#t2011
#cBioinformatics
#index3061866
#% 
#!
  
#*ProtTest 3: fast selection of best-fit models of protein evolution.
#@Diego Darriba,Guillermo L. Taboada,Ramon Doallo,David Posada
#t2011
#cBioinformatics
#index3061740
#% 
#!
  
#*High-accuracy prediction of bacterial type III secreted effectors based on position-specific amino acid composition profiles.
#@Yejun Wang,Qing Zhang,Ming-an Sun,Dianjing Guo
#t2011
#cBioinformatics
#index3061775
#% 
#!
  
#*Baking a mass-spectrometry data PIE with McMC and simulated annealing: predicting protein post-translational modifications from integrated top-down and bottom-up data.
#@Stuart R. Jefferys,Morgan C. Giddings
#t2011
#cBioinformatics
#index3061782
#% 
#!
  
#*Compression of DNA sequence reads in FASTQ format.
#@Sebastian Deorowicz,Szymon Grabowski
#t2011
#cBioinformatics
#index3061761
#% 
#!
  
#*UniCarb-DB: a database resource for glycomic discovery.
#@Catherine A. Hayes,Niclas G. Karlsson,Weston B. Struwe,Frédérique Lisacek,Pauline M. Rudd,Nicolle H. Packer,Matthew P. Campbell
#t2011
#cBioinformatics
#index3061754
#% 
#!
  
#*Rgtsp: a generalized top scoring pairs package for class prediction.
#@Vlad Popovici,Eva Budinska,Mauro Delorenzi
#t2011
#cBioinformatics
#index3061956
#% 
#!
  
#*Improving the efficiency of multidimensional scaling in the analysis of high-dimensional data using singular value decomposition.
#@Christophe Bécavin,Nicolas Tchitchek,Colette Mintsa-Eya,Annick Lesne,Arndt Benecke
#t2011
#cBioinformatics
#index3061901
#% 
#!
  
#*High-dimensional pharmacogenetic prediction of a continuous trait using machine learning techniques with application to warfarin dose prediction in African Americans.
#@Erdal Cosgun,Nita A. Limdi,Christine W. Duarte
#t2011
#cBioinformatics
#index3061892
#% 
#!
  
#*flowPhyto: enabling automated analysis of microscopic algae from continuous flow cytometric data.
#@Francois Ribalet,David M. Schruth,E. Virginia Armbrust
#t2011
#cBioinformatics
#index3061744
#% 
#!
  
#*AStream: an R package for annotating LC/MS metabolomic data.
#@Arnald Alonso,Antonio Julià,Antoni Beltran,Maria Vinaixa,Marta Díaz,Lourdes Ibañez,Xavier Correig,Sara Marsal
#t2011
#cBioinformatics
#index3061881
#% 
#!
  
#*OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms.
#@Yanqi Hao,Anna Merkoulovitch,James Vlasblom,Shuye Pu,Andrei L. Turinsky,Denitza Roudeva,Brian Turner,Jack Greenblatt,Shoshana J. Wodak
#t2011
#cBioinformatics
#index3061766
#% 
#!
  
#*Model annotation for synthetic biology: automating model to nucleotide sequence conversion.
#@Goksel Misirli,Jennifer Hallinan,Tommy Yu,James R. Lawson,Sarala M. Wimalaratne,Mike T. Cooling,Anil Wipat
#t2011
#cBioinformatics
#index3061795
#% 
#!
  
#*FISH Finder: a high-throughput tool for analyzing FISH images.
#@James W. Shirley,Sereyvathana Ty,Shin-ichiro Takebayashi,Xiuwen Liu,David M. Gilbert
#t2011
#cBioinformatics
#index3061808
#% 
#!
  
#*Rapid membrane protein topology prediction.
#@Aron Hennerdal,Arne Elofsson
#t2011
#cBioinformatics
#index3061877
#% 
#!
  
#*Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions.
#@Dan He,Farhad Hormozdiari,Nicholas A. Furlotte,Eleazar Eskin
#t2011
#cBioinformatics
#index3061928
#% 
#!
  
#*Modeling and comparing the organization of circular genomes.
#@Grace S. Shieh,Shurong Zheng,Richard A. Johnson,Yi-Feng Chang,Kunio Shimizu,Chia-Chang Wang,Sen-Lin Tang
#t2011
#cBioinformatics
#index3061804
#% 
#!
  
#*SHRiMP2: Sensitive yet Practical Short Read Mapping.
#@Matei David,Misko Dzamba,Dan Lister,Lucian Ilie,Michael Brudno
#t2011
#cBioinformatics
#index3061823
#% 
#!
  
#*Performance assessment of copy number microarray platforms using a spike-in experiment.
#@Eitan Halper-Stromberg,Laurence Frelin,Ingo Ruczinski,Robert B. Scharpf,Chunfa Jie,Benilton Carvalho,Haiping Hao,Kurt N. Hetrick,Anne Jedlicka,Amanda Dziedzic,Kim Doheny,Alan F. Scott,Steve Baylin,Jonathan Pevsner,Forrest Spencer,Rafael A. Irizarry
#t2011
#cBioinformatics
#index3061864
#% 
#!
  
#*Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models.
#@Michael Seifert,Marc Strickert,Alexander Schliep,Ivo Grosse
#t2011
#cBioinformatics
#index3061968
#% 
#!
  
#*datPAV - an online processing, analysis and visualization tool for exploratory investigation of experimental data.
#@Ambarish Biswas,Raghuraj Rao,Shivshankar Umashankar,Kalyan C. Mynampati,Sheela Reuben,Gauri Parab,Sanjay Swarup
#t2011
#cBioinformatics
#index3061923
#% 
#!
  
#*Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets.
#@Marie Brown,David C. Wedge,Royston Goodacre,Douglas B. Kell,Philip N. Baker,Louise C. Kenny,Mamas A. Mamas,Ludwig Neyses,Warwick B. Dunn
#t2011
#cBioinformatics
#index3061882
#% 
#!
  
#*Conveyor: a workflow engine for bioinformatic analyses.
#@Burkhard Linke,Robert Giegerich,Alexander Goesmann
#t2011
#cBioinformatics
#index3061818
#% 
#!
  
#*Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering.
#@Xiaolin Hao,Rui Jiang,Ting Chen
#t2011
#cBioinformatics
#index3061755
#% 
#!
  
#*Rigid substructure search.
#@David Shirvanyants,Anastassia N. Alexandrova,Nikolay V. Dokholyan
#t2011
#cBioinformatics
#index3061859
#% 
#!
  
#*The effects of feedback loops on disease comorbidity in human signaling networks.
#@Duc-Hau Le,Yung-Keun Kwon
#t2011
#cBioinformatics
#index3061832
#% 
#!
  
#*Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming.
#@Jochen Blom,Tobias Jakobi,Daniel Doppmeier,Sebastian Jaenicke,Jörn Kalinowski,Jens Stoye,Alexander Goesmann
#t2011
#cBioinformatics
#index3061893
#% 
#!
  
#*The sufficient minimal set of miRNA seed types.
#@Daniel C. Ellwanger,Florian A. Büttner,Hans-Werner Mewes,Volker Stümpflen
#t2011
#cBioinformatics
#index3061904
#% 
#!
  
#*BayesPeak - an R package for analysing ChIP-seq data.
#@Jonathan M. Cairns,Christiana Spyrou,Rory Stark,Mike L. Smith,Andy G. Lynch,Simon Tavaré
#t2011
#cBioinformatics
#index3061745
#% 
#!
  
#*Figure summarizer browser extensions for PubMed Central.
#@Shashank Agarwal,Hong Yu
#t2011
#cBioinformatics
#index3061964
#% 
#!
  
#*Clonality: an R package for testing clonal relatedness of two tumors from the same patient based on their genomic profiles.
#@Irina Ostrovnaya,Venkatraman E. Seshan,Adam B. Olshen,Colin B. Begg
#t2011
#cBioinformatics
#index3061950
#% 
#!
  
#*: analysis of differential translation in genome-wide studies.
#@Ola Larsson,Nahum Sonenberg,Robert Nadon
#t2011
#cBioinformatics
#index3061900
#% 
#!
  
#*MrBayes on a Graphics Processing Unit.
#@Jianfu Zhou,Xiaoguang Liu,Douglas S. Stones,Qiang Xie,Gang Wang
#t2011
#cBioinformatics
#index3061883
#% 
#!
  
#*HLA*IMP - an integrated framework for imputing classical HLA alleles from SNP genotypes.
#@Alexander T. Dilthey,Loukas Moutsianas,Stephen Leslie,Gil McVean
#t2011
#cBioinformatics
#index3061817
#% 
#!
  
#*SpaCEM: a software for biological module detection when data is incomplete, high dimensional and dependent.
#@Matthieu Vignes,Juliette Blanchet,Damien Leroux,Florence Forbes
#t2011
#cBioinformatics
#index3061785
#% 
#!
  
#*SCATmd: a tool for integration of the figure of merit with cluster analysis for gene expression data.
#@Amy L. Olex,Jacquelyn S. Fetrow
#t2011
#cBioinformatics
#index3061865
#% 
#!
  
#*A Bayesian approach for estimating calibration curves and unknown concentrations in immunoassays.
#@Feng Feng,Ana Paula Sales,Thomas B. Kepler
#t2011
#cBioinformatics
#index3061741
#% 
#!
  
#*Molecular signatures database (MSigDB) 3.0.
#@Arthur Liberzon,Aravind Subramanian,Reid Pinchback,Helga Thorvaldsdóttir,Pablo Tamayo,Jill P. Mesirov
#t2011
#cBioinformatics
#index3061940
#% 
#!
  
#*Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup.
#@Andrew T. Magis,John C. Earls,Youn-Hee Ko,James A. Eddy,Nathan D. Price
#t2011
#cBioinformatics
#index3061783
#% 
#!
  
#*Reasoning with bio-ontologies: using relational closure rules to enable practical querying.
#@Ward Blondé,Vladimir Mironov,Aravind Venkatesan,Erick Antezana,Bernard De Baets,Martin Kuiper
#t2011
#cBioinformatics
#index3061931
#% 
#!
  
#*Mcheza: a workbench to detect selection using dominant markers.
#@Tiago Antao,Mark A. Beaumont
#t2011
#cBioinformatics
#index3061959
#% 
#!
  
#*KalignP: Improved multiple sequence alignments using position specific gap penalties in Kalign2.
#@Nanjiang Shu,Arne Elofsson
#t2011
#cBioinformatics
#index3061949
#% 
#!
  
#*Modular analysis of the probabilistic genetic interaction network.
#@Lin Hou,Lin Wang,Minping Qian,Dong Li,Chao Tang,Yunping Zhu,Minghua Deng,Fangting Li
#t2011
#cBioinformatics
#index3061764
#% 
#!
  
#*PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination.
#@Woonghee Lee,Jin Hae Kim,William M. Westler,John L. Markley
#t2011
#cBioinformatics
#index3061965
#% 
#!
  
#*Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure.
#@Kliment Olechnovic,Mindaugas Margelevicius,Ceslovas Venclovas
#t2011
#cBioinformatics
#index3061738
#% 
#!
  
#*fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios.
#@Laurent Excoffier,Matthieu Foll
#t2011
#cBioinformatics
#index3061842
#% 
#!
  
#*R453Plus1Toolbox: an R/Bioconductor package for analyzing Roche 454 Sequencing data.
#@Hans-Ulrich Klein,Christoph Bartenhagen,Alexander Kohlmann,Vera Grossmann,Christian Ruckert,Torsten Haferlach,Martin Dugas
#t2011
#cBioinformatics
#index3061725
#% 
#!
  
#*Proteins without 3D structure: definition, detection and beyond.
#@Ferenc Orosz,Judit Ovádi
#t2011
#cBioinformatics
#index3061920
#% 
#!
  
#*The CCPN Metabolomics Project: a fast protocol for metabolite identification by 2D-NMR.
#@Francesca Chignola,Silvia Mari,Tim J. Stevens,Rasmus H. Fogh,Valeria Mannella,Wayne Boucher,Giovanna Musco
#t2011
#cBioinformatics
#index3061767
#% 
#!
  
#*Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.
#@Lee Kamentsky,Thouis R. Jones,Adam Fraser,Mark-Anthony Bray,David J. Logan,Katherine L. Madden,Vebjorn Ljosa,Curtis Rueden,Kevin W. Eliceiri,Anne E. Carpenter
#t2011
#cBioinformatics
#index3061858
#% 
#!
  
#*A wholly defined Agilent microarray spike-in dataset.
#@Qianqian Zhu,Jeffrey C. Miecznikowski,Marc S. Halfon
#t2011
#cBioinformatics
#index3061831
#% 
#!
  
#*Interactive, multiscale navigation of large and complicated biological networks.
#@Thanet Praneenararat,Toshihisa Takagi,Wataru Iwasaki
#t2011
#cBioinformatics
#index3061757
#% 
#!
  
#*A novel method for assigning functional linkages to proteins using enhanced phylogenetic trees.
#@Hung Xuan Ta,Patrik Koskinen,Liisa Holm
#t2011
#cBioinformatics
#index3061732
#% 
#!
  
#*aCGH.Spline - an R package for aCGH dye bias normalization.
#@Tomas W. Fitzgerald,Lee D. Larcombe,Solena Le Scouarnec,Stephen Clayton,Diana Rajan,Nigel P. Carter,Richard Redon
#t2011
#cBioinformatics
#index3061876
#% 
#!
  
#*Bases adjacent to mononucleotide repeats show an increased single nucleotide polymorphism frequency in the human genome.
#@K. J. Siddle,J. A. Goodship,B. Keavney,M. F. Santibanez-Koref
#t2011
#cBioinformatics
#index3061803
#% 
#!
  
#*SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists.
#@Björn Voss,Michael Hanselmann,Bernhard Y. Renard,Martin S. Lindner,Ullrich Köthe,Marc Kirchner,Fred A. Hamprecht
#t2011
#cBioinformatics
#index3061814
#% 
#!
  
#*Connectedness of PPI network neighborhoods identifies regulatory hub proteins.
#@Andrew D. Fox,Benjamin J. Hescott,Anselm Blumer,Donna K. Slonim
#t2011
#cBioinformatics
#index3061862
#% 
#!
  
#*fconv: format conversion, manipulation and feature computation of molecular data.
#@Gerd Neudert,Gerhard Klebe
#t2011
#cBioinformatics
#index3061807
#% 
#!
  
#*Mixture models for analysis of the taxonomic composition of metagenomes.
#@Peter Meinicke,Kathrin Petra Aßhauer,Thomas Lingner
#t2011
#cBioinformatics
#index3061948
#% 
#!
  
#*PathScan: a tool for discerning mutational significance in groups of putative cancer genes.
#@Michael C. Wendl,John W. Wallis,Ling Lin,Cyriac Kandoth,Elaine R. Mardis,Richard K. Wilson,Li Ding
#t2011
#cBioinformatics
#index3061969
#% 
#!
  
#*R/mpMap: a computational platform for the genetic analysis of multiparent recombinant inbred lines.
#@B. Emma Huang,Andrew W. George
#t2011
#cBioinformatics
#index3061742
#% 
#!
  
#*Signaling gateway molecule pages - a data model perspective.
#@Ashok Reddy Dinasarapu,Brian Saunders,Iley Ozerlat,Kenan Azam,Shankar Subramaniam
#t2011
#cBioinformatics
#index3061951
#% 
#!
  
#*FusionHunter: identifying fusion transcripts in cancer using paired-end RNA-seq.
#@Yang Li,Jeremy Chien,David I. Smith,Jian Ma
#t2011
#cBioinformatics
#index3061941
#% 
#!
  
#*The Physiome Model Repository 2.
#@Tommy Yu,Catherine M. Lloyd,David P. Nickerson,Mike T. Cooling,Andrew K. Miller,Alan Garny,Jonna R. Terkildsen,James R. Lawson,Randall Britten,Peter J. Hunter,Poul M. F. Nielsen
#t2011
#cBioinformatics
#index3061731
#% 
#!
  
#*MIRACH: efficient model checker for quantitative biological pathway models.
#@Chuan Hock Koh,Masao Nagasaki,Ayumu Saito,Chen Li,Limsoon Wong,Satoru Miyano
#t2011
#cBioinformatics
#index3061759
#% 
#!
  
#*Improvements in the reconstruction of time-varying gene regulatory networks: dynamic programming and regularization by information sharing among genes.
#@Marco Grzegorczyk,Dirk Husmeier
#t2011
#cBioinformatics
#index3061730
#% 
#!
  
#*GPU accelerated biochemical network simulation.
#@Yanxiang Zhou,Juliane Liepe,Xia Sheng,Michael P. H. Stumpf,Chris Barnes
#t2011
#cBioinformatics
#index3061784
#% 
#!
  
#*hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data.
#@Li Chen,George Wu,Hongkai Ji
#t2011
#cBioinformatics
#index3061903
#% 
#!
  
#*A reference dataset for the analyses of membrane protein secondary structures and transmembrane residues using circular dichroism spectroscopy.
#@Ali Abdul-Gader,Andrew John Miles,B. A. Wallace
#t2011
#cBioinformatics
#index3061962
#% 
#!
  
#*Model selection in Bayesian segmentation of multiple DNA alignments.
#@Christopher Oldmeadow,Jonathan M. Keith
#t2011
#cBioinformatics
#index3061756
#% 
#!
  
#*Annotating genes and genomes with DNA sequences extracted from biomedical articles.
#@Maximilian Haeussler,Martin Gerner,Casey M. Bergman
#t2011
#cBioinformatics
#index3061802
#% 
#!
  
#*Integrative network alignment reveals large regions of global network similarity in yeast and human.
#@Oleksii Kuchaiev,Natasa Przulj
#t2011
#cBioinformatics
#index3061899
#% 
#!
  
#*MAISTAS: a tool for automatic structural evaluation of alternative splicing products.
#@Matteo Floris,Domenico Raimondo,Guido Leoni,Massimiliano Orsini,Paolo Marcatili,Anna Tramontano
#t2011
#cBioinformatics
#index3061953
#% 
#!
  
#*Multi-level mixed effects models for bead arrays.
#@Ryung S. Kim,Juan Lin
#t2011
#cBioinformatics
#index3061743
#% 
#!
  
#*Customizable views on semantically integrated networks for systems biology.
#@Jochen Weile,Matthew R. Pocock,Simon J. Cockell,Phillip W. Lord,James M. Dewar,Eva-Maria Holstein,Darren J. Wilkinson,David A. Lydall,Jennifer Hallinan,Anil Wipat
#t2011
#cBioinformatics
#index3061890
#% 
#!
  
#*uMELT: prediction of high-resolution melting curves and dynamic melting profiles of PCR products in a rich web application.
#@Zachary Dwight,Robert Palais,Carl T. Wittwer
#t2011
#cBioinformatics
#index3061825
#% 
#!
  
#*Network clustering: probing biological heterogeneity by sparse graphical models.
#@Sach Mukherjee,Steven M. Hill
#t2011
#cBioinformatics
#index3061797
#% 
#!
  
#*Quantitative trait prediction based on genetic marker-array data, a simulation study.
#@Wai-ki Yip,Christoph Lange
#t2011
#cBioinformatics
#index3061772
#% 
#!
  
#*Reliability-Oriented bioinformatic networks visualization.
#@Ahmet Emre Aladag,Cesim Erten,Melih Sözdinler
#t2011
#cBioinformatics
#index3061913
#% 
#!
  
#*BioGRID REST Service, BiogridPlugin2 and BioGRID WebGraph: new tools for access to interaction data at BioGRID.
#@Andrew G. Winter,Jan Wildenhain,Mike Tyers
#t2011
#cBioinformatics
#index3061815
#% 
#!
  
#*A sub-pathway-based approach for identifying drug response principal network.
#@Xiujie Chen,Jiankai Xu,Bangqing Huang,Jin Li,Xin Wu,Ling Ma,Xiaodong Jia,Xiusen Bian,Fujian Tan,Lei Liu,Sheng Chen,Xia Li
#t2011
#cBioinformatics
#index3061739
#% 
#!
  
#*CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments.
#@Lakshmi Kuttippurathu,Michael Hsing,Yongchao Liu,Bertil Schmidt,Douglas L. Maskell,Kyungjoon Lee,Aibin He,William T. Pu,Sek Won Kong
#t2011
#cBioinformatics
#index3061751
#% 
#!
  
#*PRIMe: a method for characterization and evaluation of pleiotropic regions from multiple genome-wide association studies.
#@Jie Huang,Andrew D. Johnson,Christopher J. O'Donnell
#t2011
#cBioinformatics
#index3061875
#% 
#!
  
#*RuleBender: a visual interface for rule-based modeling.
#@Wen Xu,Adam M. Smith,James R. Faeder,G. Elisabeta Marai
#t2011
#cBioinformatics
#index3061947
#% 
#!
  
#*A novel network-based method for measuring the functional relationship between gene sets.
#@Qianghu Wang,Jie Sun,Meng Zhou,Haixiu Yang,Yan Li,Xiang Li,Sali Lv,Xia Li,Yixue Li
#t2011
#cBioinformatics
#index3061938
#% 
#!
  
#*SMETHILLIUM: spatial normalization METHod for ILLumina InfinIUM HumanMethylation BeadChip.
#@Camille Sabbah,Gildas Mazo,Caroline Paccard,Fabien Reyal,Philippe Hupé
#t2011
#cBioinformatics
#index3061966
#% 
#!
  
#*Cross-platform comparison of microarray data using order restricted inference.
#@Florian Klinglmueller,Thomas Tuechler,Martin Posch
#t2011
#cBioinformatics
#index3061796
#% 
#!
  
#*Agos - a universal web tool for GW Argonaute-binding domain prediction.
#@Andrzej Zielezinski,Wojciech M. Karlowski
#t2011
#cBioinformatics
#index3061843
#% 
#!
  
#*LSPR: an integrated periodicity detection algorithm for unevenly sampled temporal microarray data.
#@Rendong Yang,Chen Zhang,Zhen Su
#t2011
#cBioinformatics
#index3061806
#% 
#!
  
#*pathClass: an R-package for integration of pathway knowledge into support vector machines for biomarker discovery.
#@Marc Johannes,Holger Fröhlich,Holger Sültmann,Tim Beißbarth
#t2011
#cBioinformatics
#index3061898
#% 
#!
  
#*B2G-FAR, a species-centered GO annotation repository.
#@Stefan Götz,Roland Arnold,Patricia Sebastián-León,Samuel Martín-Rodríguez,Patrick Tischler,Marc-André Jehl,Joaquín Dopazo,Thomas Rattei,Ana Conesa
#t2011
#cBioinformatics
#index3061824
#% 
#!
  
#*PLIO: an ontology for formal description of protein-ligand interactions.
#@Olga Ivchenko,Erfan Younesi,Mohammad Shahid,Antje Wolf,Bernd Müller,Martin Hofmann-Apitius
#t2011
#cBioinformatics
#index3061975
#% 
#!
  
#*ogaraK: a population genetics simulator for malaria.
#@Tiago Antao,Ian M. Hastings
#t2011
#cBioinformatics
#index3061830
#% 
#!
  
#*Multi-platform segmentation for joint detection of copy number variants.
#@Teo Shu Mei,Yudi Pawitan,Vikrant Kumar,Anbupalam Thalamuthu,Mark Seielstad,Kee Seng Chia,Agus Salim
#t2011
#cBioinformatics
#index3061922
#% 
#!
  
#*Large-scale learning of combinatorial transcriptional dynamics from gene expression.
#@Hafiz Muhammad Shahzad Asif,Guido Sanguinetti
#t2011
#cBioinformatics
#index3061884
#% 
#!
  
#*A fast, lock-free approach for efficient parallel counting of occurrences of -mers.
#@Guillaume Marçais,Carl Kingsford
#t2011
#cBioinformatics
#index3061779
#% 
#!
  
#*Automated validation of genetic variants from large databases: ensuring that variant references refer to the same genomic locations.
#@Mark Y. Tong,Christopher A. Cassa,Isaac S. Kohane
#t2011
#cBioinformatics
#index3061786
#% 
#!
  
#*Systems biology model repository for macrophage pathway simulation.
#@Masao Nagasaki,Ayumu Saito,André Fujita,Georg Tremmel,Kazuko Ueno,Emi Ikeda,Euna Jeong,Satoru Miyano
#t2011
#cBioinformatics
#index3061932
#% 
#!
  
#*Identifying viral integration sites using SeqMap 2.0.
#@Troy B. Hawkins,Jessica Dantzer,Brandon Peters,Mary Dinauer,Keithanne Mockaitis,Sean D. Mooney,Kenneth Cornetta
#t2011
#cBioinformatics
#index3061748
#% 
#!
  
#*Grid computing for improving conformational sampling in NMR structure calculation.
#@Fabien Mareuil,Christophe Blanchet,Therese E. Malliavin,Michael Nilges
#t2011
#cBioinformatics
#index3061952
#% 
#!
  
#*DREME: motif discovery in transcription factor ChIP-seq data.
#@Timothy L. Bailey
#t2011
#cBioinformatics
#index3061963
#% 
#!
  
#*Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.
#@Andrew McPherson,Chunxiao Wu,Iman Hajirasouliha,Fereydoun Hormozdiari,Faraz Hach,Anna Lapuk,Stanislav Volik,Sohrab Shah,Colin Collins,Süleyman Cenk Sahinalp
#t2011
#cBioinformatics
#index3061939
#% 
#!
  
#*: functional synthesis and improved interpretation of Gene Ontology patterns.
#@Xinan Yang,Jianrong Li,Younghee Lee,Yves A. Lussier
#t2011
#cBioinformatics
#index3061891
#% 
#!
  
#*TEQC: an R package for quality control in target capture experiments.
#@Manuela Hummel,Sarah Bonnin,Ernesto Lowy,Guglielmo Roma
#t2011
#cBioinformatics
#index3061841
#% 
#!
  
#*Wave-spec: a preprocessing package for mass spectrometry data.
#@Ming Li,Shuo Chen,Joan Zhang,Heidi Chen,Yu Shyr
#t2011
#cBioinformatics
#index3061737
#% 
#!
  
#*Computational inference of grammars for larger-than-gene structures from annotated gene sequences.
#@Guy Tsafnat,Jaron Schaeffer,Andrew Clayphan,Jonathan R. Iredell,Sally R. Partridge,Enrico W. Coiera
#t2011
#cBioinformatics
#index3061776
#% 
#!
  
#*FNV: light-weight flash-based network and pathway viewer.
#@Ruth Dannenfelser,Alexander Lachmann,Mariola Szenk,Avi Ma'ayan
#t2011
#cBioinformatics
#index3061726
#% 
#!
  
#*: efficient classification of real and pseudo plant pre-miRNAs.
#@Ping Xuan,Maozu Guo,Xiaoyan Liu,Yangchao Huang,Wenbin Li,Yufei Huang
#t2011
#cBioinformatics
#index3061902
#% 
#!
  
#*Histogram-based DNA analysis for the visualization of chromosome, genome and species information.
#@António M. Costa,José T. Machado,Maria D. Quelhas
#t2011
#cBioinformatics
#index3061837
#% 
#!
  
#*FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes.
#@Beifang Niu,Zhengwei Zhu,Limin Fu,Sitao Wu,Weizhong Li
#t2011
#cBioinformatics
#index3061946
#% 
#!
  
#*Mixtures of common -factor analyzers for clustering high-dimensional microarray data.
#@Jangsun Baek,Geoffrey J. McLachlan
#t2011
#cBioinformatics
#index3061848
#% 
#!
  
#*Inference of transcriptional regulatory network by bootstrapping patterns.
#@Hei-Chia Wang,Yi-Hsiu Chen,Hung-Yu Kao,Shaw-Jenq Tsai
#t2011
#cBioinformatics
#index3061912
#% 
#!
  
#*Automatically identifying and annotating mouse embryo gene expression patterns.
#@Liangxiu Han,Jano I. van Hemert,Richard A. Baldock
#t2011
#cBioinformatics
#index3061851
#% 
#!
  
#*EpiGPU: exhaustive pairwise epistasis scans parallelized on consumer level graphics cards.
#@Gibran Hemani,Athanasios Theocharidis,Wenhua Wei,Chris S. Haley
#t2011
#cBioinformatics
#index3061925
#% 
#!
  
#*BiC: a web server for calculating bimodality of coexpression between gene and protein networks.
#@George C. Linderman,Vishal N. Patel,Mark R. Chance,Gürkan Bebek
#t2011
#cBioinformatics
#index3061873
#% 
#!
  
#*GeneReporter - sequence-based document retrieval and annotation.
#@Annekathrin Bartsch,Boyke Bunk,Isam Haddad,Johannes Klein,Richard Münch,Thorsten Johl,Uwe Kärst,Lothar Jänsch,Dieter Jahn,Ida Retter
#t2011
#cBioinformatics
#index3061826
#% 
#!
  
#*Automated bond order assignment as an optimization problem.
#@Anna Katharina Dehof,Alexander Rurainski,Quang Bao Anh Bui,Sebastian Böcker,Hans-Peter Lenhof,Andreas Hildebrandt
#t2011
#cBioinformatics
#index3061750
#% 
#!
  
#*Identity-by-descent filtering of exome sequence data for disease-gene identification in autosomal recessive disorders.
#@Christian Rödelsperger,Peter Krawitz,Sebastian Bauer,Jochen Hecht,Abigail W. Bigham,Michael Bamshad,Birgit Jonske de Condor,Michal R. Schweiger,Peter N. Robinson
#t2011
#cBioinformatics
#index3061777
#% 
#!
  
#*Compounds In Literature (CIL): screening for compounds and relatives in PubMed.
#@Björn A. Grüning,Christian Senger,Anika Erxleben,Stephan Flemming,Stefan Günther
#t2011
#cBioinformatics
#index3061791
#% 
#!
  
#*SiGN-SSM: open source parallel software for estimating gene networks with state space models.
#@Yoshinori Tamada,Rui Yamaguchi,Seiya Imoto,Osamu Hirose,Ryo Yoshida,Masao Nagasaki,Satoru Miyano
#t2011
#cBioinformatics
#index3061863
#% 
#!
  
#*Gobe: an interactive, web-based tool for comparative genomic visualization.
#@Brent S. Pedersen,Haibao Tang,Michael Freeling
#t2011
#cBioinformatics
#index3061798
#% 
#!
  
#*Services for prediction of drug susceptibility for HIV proteases and reverse transcriptases at the HIV drug research centre.
#@Ola Spjuth,Martin Eklund,Maris Lapinsh,Muhammad Junaid,Jarl E. S. Wikberg
#t2011
#cBioinformatics
#index3061967
#% 
#!
  
#*Improved similarity scores for comparing motifs.
#@Emi Tanaka,Timothy L. Bailey,Charles E. Grant,William Stafford Noble,Uri Keich
#t2011
#cBioinformatics
#index3061974
#% 
#!
  
#*Biological assessment of robust noise models in microarray data analysis.
#@Alexandra Posekany,K. Felsenstein,P. Sykacek
#t2011
#cBioinformatics
#index3061773
#% 
#!
  
#*MPID-T2: a database for sequence-structure-function analyses of pMHC and TR/pMHC structures.
#@Javed Mohammed Khan,Harish Reddy Cheruku,Joo Chuan Tong,Shoba Ranganathan
#t2011
#cBioinformatics
#index3061874
#% 
#!
  
#*Alignment-free detection of local similarity among viral and bacterial genomes.
#@Mirjana Domazet-Loso,Bernhard Haubold
#t2011
#cBioinformatics
#index3061936
#% 
#!
  
#*A graphical interface for the FoldX forcefield.
#@Joost J. J. van Durme,Javier Delgado,Francois Stricher,Luis Serrano,Joost Schymkowitz,Frederic Rousseau
#t2011
#cBioinformatics
#index3061945
#% 
#!
  
#*A high-throughput processing service for retention time alignment of complex proteomics and metabolomics LC-MS data.
#@Isthiaq Ahmad,Frank Suits,Berend Hoekman,Morris A. Swertz,Heorhiy Byelas,Martijn Dijkstra,Rob W. W. Hooft,Dmitry Katsubo,Bas van Breukelen,Rainer Bischoff,Peter Horvatovich
#t2011
#cBioinformatics
#index3061888
#% 
#!
  
#*Multiple-rule bias in the comparison of classification rules.
#@Mohammadmahdi R. Yousefi,Jianping Hua,Edward R. Dougherty
#t2011
#cBioinformatics
#index3061960
#% 
#!
  
#*tigre: Transcription factor inference through gaussian process reconstruction of expression for bioconductor.
#@Antti Honkela,Pei Gao,Jonatan Ropponen,Magnus Rattray,Neil D. Lawrence
#t2011
#cBioinformatics
#index3061813
#% 
#!
  
#*Pathway analysis of high-throughput biological data within a Bayesian network framework.
#@Senol Isci,Cengizhan Ozturk,Jon Jones,Hasan H. Otu
#t2011
#cBioinformatics
#index3061973
#% 
#!
  
#*Entropy-accelerated exact clustering of protein decoys.
#@Francois Berenger,Yong Zhou,Rojan Shrestha,Kam Y. J. Zhang
#t2011
#cBioinformatics
#index3061820
#% 
#!
  
#*SurvJamda: an R package to predict patients' survival and risk assessment using joint analysis of microarray gene expression data.
#@Haleh Yasrebi
#t2011
#cBioinformatics
#index3061869
#% 
#!
  
#*Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds.
#@Fangping Mu,Clifford J. Unkefer,Pat J. Unkefer,William S. Hlavacek
#t2011
#cBioinformatics
#index3061918
#% 
#!
  
#*Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation.
#@Yang Cao,Lin Song,Zhichao Miao,Yun Hu,Liqing Tian,Taijiao Jiang
#t2011
#cBioinformatics
#index3061790
#% 
#!
  
#*Human variation database: an open-source database template for genomic discovery.
#@Anthony P. Fejes,Alireza Hadj Khodabakhshi,Inanç Birol,Steven J. M. Jones
#t2011
#cBioinformatics
#index3061836
#% 
#!
  
#*: an efficient Cloud Epistasis cOmputing model in genome-wide association study.
#@Zhengkui Wang,Yue Wang,Kian-Lee Tan,Limsoon Wong,Divyakant Agrawal
#t2011
#cBioinformatics
#index3061849
#% 
#!
  
#*STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB.
#@Guido Klingbeil,Radek Erban,Mike Giles,Philip K. Maini
#t2011
#cBioinformatics
#index3061860
#% 
#!
  
#*Prediction of novel pre-microRNAs with high accuracy through boosting and SVM.
#@Yuanwei Zhang,Yifan Yang,Huan Zhang,Xiaohua Jiang,Bo Xu,Yu Xue,Yunxia Cao,Qian Zhai,Yong Zhai,Mingqing Xu,Howard J. Cooke,Qinghua Shi
#t2011
#cBioinformatics
#index3061897
#% 
#!
  
#*An optimal peak alignment for comprehensive two-dimensional gas chromatography mass spectrometry using mixture similarity measure.
#@Seongho Kim,Aiqin Fang,Bing Wang,Jaesik Jeong,Xiang Zhang
#t2011
#cBioinformatics
#index3061955
#% 
#!
  
#*Prediction of microRNA targets in using a self-organizing map.
#@Liisa Heikkinen,Mikko Kolehmainen,Garry Wong
#t2011
#cBioinformatics
#index3061727
#% 
#!
  
#*Robust linear regression methods in association studies.
#@V. M. Lourenço,Ana M. Pires,M. Kirst
#t2011
#cBioinformatics
#index3061787
#% 
#!
  
#*HiSpOD: probe design for functional DNA microarrays.
#@Eric Dugat-Bony,Mohieddine Missaoui,Eric Peyretaillade,Corinne Biderre-Petit,Ourdia Bouzid,Christophe Gouinaud,David R. C. Hill,Pierre Peyret
#t2011
#cBioinformatics
#index3061736
#% 
#!
  
#*Identifying dispersed epigenomic domains from ChIP-Seq data.
#@Qiang Song,Andrew D. Smith
#t2011
#cBioinformatics
#index3061765
#% 
#!
  
#*Quality control and preprocessing of metagenomic datasets.
#@Robert Schmieder,Robert Edwards
#t2011
#cBioinformatics
#index3061778
#% 
#!
  
#*AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excision.
#@Alexej Abyzov,Mark Gerstein
#t2011
#cBioinformatics
#index3061749
#% 
#!
  
#*Improving SNP discovery by base alignment quality.
#@Heng Li
#t2011
#cBioinformatics
#index3061878
#% 
#!
  
#*Comprehensive and relaxed search for oligonucleotide signatures in hierarchically clustered sequence datasets.
#@Kai Christian Bader,Christian Grothoff,Harald Meier
#t2011
#cBioinformatics
#index3061915
#% 
#!
  
#*Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format.
#@Michael Edmonson,Jinghui Zhang,Chunhua Yan,Richard P. Finney,Daoud M. Meerzaman,Kenneth H. Buetow
#t2011
#cBioinformatics
#index3061770
#% 
#!
  
#*SplamiR - prediction of spliced miRNAs in plants.
#@Christoph J. Thieme,Lydia Gramzow,Dajana Lobbes,Günter Theißen
#t2011
#cBioinformatics
#index3061855
#% 
#!
  
#*BACOM: detection of genomic deletion types and correction of normal cell contamination in copy number data.
#@Guoqiang Yu,Bai Zhang,G. Steven Bova,Jianfeng Xu,Ie-Ming Shih,Yue Wang
#t2011
#cBioinformatics
#index3061924
#% 
#!
  
#*The MEMPACK alpha-helical transmembrane protein structure prediction server.
#@Timothy Nugent,Sean Ward,David T. Jones
#t2011
#cBioinformatics
#index3061906
#% 
#!
  
#*A novel hybrid gene prediction method employing protein multiple sequence alignments.
#@Oliver Keller,Martin Kollmar,Mario Stanke,Stephan Waack
#t2011
#cBioinformatics
#index3061760
#% 
#!
  
#*Phage display can select over-hydrophobic sequences that may impair prediction of natural domain-peptide interactions.
#@Katja Luck,Gilles Travé
#t2011
#cBioinformatics
#index3061827
#% 
#!
  
#*ReMark: an automatic program for clustering orthologs flexibly combining a Recursive and a Markov clustering algorithms.
#@Kangseok Kim,Wonil Kim,Sunshin Kim
#t2011
#cBioinformatics
#index3061961
#% 
#!
  
#*A Ruby API to query the Ensembl database for genomic features.
#@Francesco Strozzi,Jan Aerts
#t2011
#cBioinformatics
#index3061799
#% 
#!
  
#*A common layer of interoperability for biomedical ontologies based on OWL EL.
#@Robert Hoehndorf,Michel Dumontier,Anika Oellrich,Sarala M. Wimalaratne,Dietrich Rebholz-Schuhmann,Paul Schofield,Georgios V. Gkoutos
#t2011
#cBioinformatics
#index3061812
#% 
#!
  
#*Identifying discriminative classification-based motifs in biological sequences.
#@Celine Vens,Marie-Noëlle Rosso,Etienne G. J. Danchin
#t2011
#cBioinformatics
#index3061840
#% 
#!
  
#*Topological entropy of DNA sequences.
#@David Koslicki
#t2011
#cBioinformatics
#index3061850
#% 
#!
  
#*High-throughput feature counting and measurement of roots.
#@Asad Naeem,Andrew P. French,Darren M. Wells,Tony P. Pridmore
#t2011
#cBioinformatics
#index3061872
#% 
#!
  
#*CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks.
#@Pieter Audenaert,Thomas Van Parys,Florian Brondel,Mario Pickavet,Piet Demeester,Yves Van de Peer,Tom Michoel
#t2011
#cBioinformatics
#index3061933
#% 
#!
  
#*AGRA: analysis of gene ranking algorithms.
#@Simon Kocbek,Rune Sætre,Gregor Stiglic,Jin-Dong Kim,Igor Pernek,Yoshimasa Tsuruoka,Peter Kokol,Sophia Ananiadou,Jun-ichi Tsujii
#t2011
#cBioinformatics
#index3061853
#% 
#!
  
#*A comprehensive protein-centric ID mapping service for molecular data integration.
#@Hongzhan Huang,Peter B. McGarvey,Baris E. Suzek,Raja Mazumder,Jian Zhang,Yongxing Chen,Cathy H. Wu
#t2011
#cBioinformatics
#index3061828
#% 
#!
  
#*Mass-balanced randomization of metabolic networks.
#@Georg Basler,Oliver Ebenhöh,Joachim Selbig,Zoran Nikoloski
#t2011
#cBioinformatics
#index3061896
#% 
#!
  
#*DiNAMIC: a method to identify recurrent DNA copy number aberrations in tumors.
#@Vonn Walter,Andrew B. Nobel,Fred A. Wright
#t2011
#cBioinformatics
#index3061735
#% 
#!
  
#*An efficient hierarchical generalized linear mixed model for pathway analysis of genome-wide association studies.
#@Lily Wang,Peilin Jia,Russell D. Wolfinger,Xi Chen,Britney L. Grayson,Thomas M. Aune,Zhongming Zhao
#t2011
#cBioinformatics
#index3061746
#% 
#!
  
#*Identification and quantification of metabolites in H NMR spectra by Bayesian model selection.
#@Cheng Zheng,Shucha Zhang,Susanne Ragg,Daniel Raftery,Olga Vitek
#t2011
#cBioinformatics
#index3061944
#% 
#!
  
#*: Protein Dynamics Inferred from Theory and Experiments.
#@Ahmet Bakan,Lidio M. Meireles,Ivet Bahar
#t2011
#cBioinformatics
#index3061937
#% 
#!
  
#*Boulder ALignment Editor (ALE): a web-based RNA alignment tool.
#@Jesse Stombaugh,Jeremy Widmann,Daniel McDonald,Rob Knight
#t2011
#cBioinformatics
#index3061954
#% 
#!
  
#*APOLLO: a quality assessment service for single and multiple protein models.
#@Zheng Wang,Jesse Eickholt,Jianlin Cheng
#t2011
#cBioinformatics
#index3061972
#% 
#!
  
#*Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs.
#@Marcus Kinsella,Olivier Harismendy,Masakazu Nakano,Kelly A. Frazer,Vineet Bafna
#t2011
#cBioinformatics
#index3061879
#% 
#!
  
#*A greedy, graph-based algorithm for the alignment of multiple homologous gene lists.
#@Jan Fostier,Sebastian Proost,Bart Dhoedt,Yvan Saeys,Piet Demeester,Yves Van de Peer,Klaas Vandepoele
#t2011
#cBioinformatics
#index3061774
#% 
#!
  
#*A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio.
#@Henry C. M. Leung,Siu-Ming Yiu,Bin Yang,Yu Peng,Yi Wang,Zhihua Liu,Jing-Chi Chen,Junjie Qin,Ruiqiang Li,Francis Y. L. Chin
#t2011
#cBioinformatics
#index3061927
#% 
#!
  
#*MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets.
#@Daniel Baron,Audrey Bihouée,Raluca Teusan,Emeric Dubois,Frédérique Savagner,Marja Steenman,Rémi Houlgatte,Gérard Ramstein
#t2011
#cBioinformatics
#index3061728
#% 
#!
  
#*Correcting errors in short reads by multiple alignments.
#@Leena Salmela,Jan Schröder
#t2011
#cBioinformatics
#index3061919
#% 
#!
  
#*GeneTUKit: a software for document-level gene normalization.
#@Minlie Huang,Jingchen Liu,Xiaoyan Zhu
#t2011
#cBioinformatics
#index3061821
#% 
#!
  
#*A Java API for working with PubChem datasets.
#@Mark R. Southern,Patrick R. Griffin
#t2011
#cBioinformatics
#index3061753
#% 
#!
  
#*PUGSVM: a caBIG analytical tool for multiclass gene selection and predictive classification.
#@Guoqiang Yu,Huai Li,Sook S. Ha,Ie-Ming Shih,Robert Clarke,Eric P. Hoffman,Subha Madhavan,Jianhua Xuan,Yue Joseph Wang
#t2011
#cBioinformatics
#index3061793
#% 
#!
  
#*A pipeline for RNA-seq data processing and quality assessment.
#@Angela Goncalves,Andrew Tikhonov,Alvis Brazma,Misha Kapushesky
#t2011
#cBioinformatics
#index3061768
#% 
#!
  
#*Structure-based prediction of zinc-binding sites in proteins of unknown function.
#@Wei Zhao,Meng Xu,Zhi Liang,Bo Ding,Liwen Niu,Haiyan Liu,Maikun Teng
#t2011
#cBioinformatics
#index3061854
#% 
#!
  
#*ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments.
#@Ernesto Picardi,Mattia D'Antonio,Danilo Carrabino,Tiziana Castrignanò,Graziano Pesole
#t2011
#cBioinformatics
#index3061835
#% 
#!
  
#*Easyfig: a genome comparison visualizer.
#@Mitchell J. Sullivan,Nicola K. Petty,Scott A. Beatson
#t2011
#cBioinformatics
#index3061800
#% 
#!
  
#*MemLoci: predicting subcellular localization of membrane proteins in eukaryotes.
#@Andrea Pierleoni,Pier Luigi Martelli,Rita Casadio
#t2011
#cBioinformatics
#index3061857
#% 
#!
  
#*Proteomics to go: Proteomatic enables the user-friendly creation of versatile MS/MS data evaluation workflows.
#@Michael Specht,Sebastian Kuhlgert,Christian Fufezan,Michael Hippler
#t2011
#cBioinformatics
#index3061861
#% 
#!
  
#*birgHPC: creating instant computing clusters for bioinformatics and molecular dynamics.
#@Teong Han Chew,Kwee Hong Joyce-Tan,Farizuwana Akma,Mohd Shahir Shamsir
#t2011
#cBioinformatics
#index3061868
#% 
#!
  
#*DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models.
#@Cenny Taslim,Tim Hui-Ming Huang,Shili Lin
#t2011
#cBioinformatics
#index3061934
#% 
#!
  
#*MBRole: enrichment analysis of metabolomic data.
#@Monica Chagoyen,Florencio Pazos
#t2011
#cBioinformatics
#index3061734
#% 
#!
  
#*The caBIG® Life Science Business Architecture Model.
#@Lauren Becnel Boyd,Scott P. Hunicke-Smith,Grace A. Stafford,Elaine T. Freund,Michele Ehlman,Uma Chandran,Robert Dennis,Anna T. Fernandez,Stephen Goldstein,David Steffen,Benjamin Tycko,Juli D. Klemm
#t2011
#cBioinformatics
#index3061907
#% 
#!
  
#*Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.
#@Felix Krueger,Simon R. Andrews
#t2011
#cBioinformatics
#index3061914
#% 
#!
  
#*Inferring Boolean network structure via correlation.
#@Markus Maucher,Barbara Kracher,Michael Kühl,Hans A. Kestler
#t2011
#cBioinformatics
#index3061930
#% 
#!
  
#*Genome annotation test with validation on transcription start site and ChIP-Seq for Pol-II binding data.
#@Justin Bedo,Adam Kowalczyk
#t2011
#cBioinformatics
#index3061958
#% 
#!
  
#*A -mer scheme to predict piRNAs and characterize locust piRNAs.
#@Yi Zhang,Xianhui Wang,Le Kang
#t2011
#cBioinformatics
#index3061781
#% 
#!
  
#*Efficient simulation under a population genetics model of carcinogenesis.
#@Tianqi Zhu,Yucheng Hu,Zhi-Ming Ma,De-Xing Zhang,Tiejun Li,Ziheng Yang
#t2011
#cBioinformatics
#index3061788
#% 
#!
  
#*HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens.
#@Xin Wang,Camille Terfve,John C. Rose,Florian Markowetz
#t2011
#cBioinformatics
#index3061771
#% 
#!
  
#*Topology and prediction of RNA pseudoknots.
#@Christian M. Reidys,Fenix W. D. Huang,Jørgen E. Andersen,Robert C. Penner,Peter F. Stadler,Markus E. Nebel
#t2011
#cBioinformatics
#index3061880
#% 
#!
  
#*Discovering relational-based association rules with multiple minimum supports on microarray datasets.
#@Yu-Cheng Liu,Chun-Pei Cheng,Vincent S. Tseng
#t2011
#cBioinformatics
#index3136178
#% 
#!
  
#*GenPlay, a multipurpose genome analyzer and browser.
#@Julien Lajugie,Eric E. Bouhassira
#t2011
#cBioinformatics
#index3136266
#% 
#!
  
#*Automatic detection of changes in the dynamics of delayed stochastic gene networks and production of RNA molecules in .
#@Jarno Mäkelä,Heikki Huttunen,Meenakshisundaram Kandhavelu,Olli Yli-Harja,Andre S. Ribeiro
#t2011
#cBioinformatics
#index3136241
#% 
#!
  
#*ModeRNA server: an online tool for modeling RNA 3D structures.
#@Magdalena Rother,Kaja Milanowska,Tomasz Puton,Jaroslaw Jeleniewicz,Kristian Rother,Janusz M. Bujnicki
#t2011
#cBioinformatics
#index3136194
#% 
#!
  
#*Paired-end RAD-seq for assembly and marker design without available reference.
#@Eva-Maria Willing,Margarete Hoffmann,Juliane D. Klein,Detlef Weigel,Christine Dreyer
#t2011
#cBioinformatics
#index3136161
#% 
#!
  
#*Visual DSD: a design and analysis tool for DNA strand displacement systems.
#@Matthew R. Lakin,Simon Youssef,Filippo Polo,Stephen Emmott,Andrew Phillips
#t2011
#cBioinformatics
#index3136349
#% 
#!
  
#*Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding?
#@Qian Liu,Steven C. H. Hoi,Chinh T. T. Su,Zhenhua Li,Chee-Keong Kwoh,Limsoon Wong,Jinyan Li
#t2011
#cBioinformatics
#index3136331
#% 
#!
  
#*Immune system simulation online.
#@Nicolas Rapin,Ole Lund,Filippo Castiglione
#t2011
#cBioinformatics
#index3136175
#% 
#!
  
#*Estimating classification probabilities in high-dimensional diagnostic studies.
#@Inka J. Appel,Wolfram Gronwald,Rainer Spang
#t2011
#cBioinformatics
#index3136393
#% 
#!
  
#*Integration of gene normalization stages and co-reference resolution using a Markov logic network.
#@Hong-Jie Dai,Yen-Ching Chang,Richard Tzong-Han Tsai,Wen-Lian Hsu
#t2011
#cBioinformatics
#index3136205
#% 
#!
  
#*Integration and visualization of host-pathogen data related to infectious diseases.
#@Timothy Driscoll,Joseph L. Gabbard,Chunhong Mao,Oral Dalay,Maulik Shukla,Clark C. Freifeld,Anne Gatewood Hoen,John S. Brownstein,Bruno W. S. Sobral
#t2011
#cBioinformatics
#index3136335
#% 
#!
  
#*KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats.
#@Clemens Wrzodek,Andreas Dräger,Andreas Zell
#t2011
#cBioinformatics
#index3136303
#% 
#!
  
#*ChimeraScan: a tool for identifying chimeric transcription in sequencing data.
#@Matthew K. Iyer,Arul M. Chinnaiyan,Christopher A. Maher
#t2011
#cBioinformatics
#index3136215
#% 
#!
  
#*The variant call format and VCFtools.
#@Petr Danecek,Adam Auton,Gonçalo R. Abecasis,Cornelis A. Albers,Eric Banks,Mark A. DePristo,Robert E. Handsaker,Gerton Lunter,Gabor T. Marth,Stephen T. Sherry,Gilean McVean,Richard Durbin
#t2011
#cBioinformatics
#index3136306
#% 
#!
  
#*Robust biclustering by sparse singular value decomposition incorporating stability selection.
#@Martin Sill,Sebastian Kaiser,Axel Benner,Annette Kopp-Schneider
#t2011
#cBioinformatics
#index3136248
#% 
#!
  
#*CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer.
#@Wing Chung Wong,Dewey Kim,Hannah Carter,Mark Diekhans,Michael C. Ryan,Rachel Karchin
#t2011
#cBioinformatics
#index3136260
#% 
#!
  
#*Characteristics of 454 pyrosequencing data - enabling realistic simulation with flowsim.
#@Susanne Balzer,Ketil Malde,Anders Lanzén,Animesh Sharma,Inge Jonassen
#t2011
#cBioinformatics
#index3136151
#% 
#!
  
#*Decomposing flux distributions into elementary flux modes in genome-scale metabolic networks.
#@Siu Hung Joshua Chan,Ping Ji
#t2011
#cBioinformatics
#index3136203
#% 
#!
  
#*Lower confidence bounds for prediction accuracy in high dimensions via AROHIL Monte Carlo.
#@Kevin K. Dobbin,Stephanie Cooke
#t2011
#cBioinformatics
#index3136154
#% 
#!
  
#*ReplacementMatrix: a web server for maximum-likelihood estimation of amino acid replacement rate matrices.
#@Cuong Cao Dang,Vincent Lefort,Le Sy Vinh,Si Quang Le,Olivier Gascuel
#t2011
#cBioinformatics
#index3136220
#% 
#!
  
#*HIV Therapy Simulator: a graphical user interface for comparing the effectiveness of novel therapy regimens.
#@Huat Chye Lim,Marcel E. Curlin,John E. Mittler
#t2011
#cBioinformatics
#index3136343
#% 
#!
  
#*analysis of phytoene synthase and its promoter reveals hints for regulation mechanisms of carotenogenesis in .
#@Yong-Min Lao,Lan Xiao,Zhi-Wei Ye,Jian-Guo Jiang,Shi-Shui Zhou
#t2011
#cBioinformatics
#index3136313
#% 
#!
  
#*Finding recurrent copy number alterations preserving within-sample homogeneity.
#@Sandro Morganella,Stefano Maria Pagnotta,Michele Ceccarelli
#t2011
#cBioinformatics
#index3136285
#% 
#!
  
#*Bayesian prediction of tissue-regulated splicing using RNA sequence and cellular context.
#@Hui Yuan Xiong,Yoseph Barash,Brendan J. Frey
#t2011
#cBioinformatics
#index3136239
#% 
#!
  
#*Weakly supervised learning of information structure of scientific abstracts - is it accurate enough to benefit real-world tasks in biomedicine?
#@Yufan Guo,Anna Korhonen,Ilona Silins,Ulla Stenius
#t2011
#cBioinformatics
#index3136157
#% 
#!
  
#*Neural fate decisions mediated by -activation and -inhibition in Notch signaling.
#@Ruiqi Wang,Kaihui Liu,Luonan Chen,Kazuyuki Aihara
#t2011
#cBioinformatics
#index3136354
#% 
#!
  
#*Improved quality control processing of peptide-centric LC-MS proteomics data.
#@Melissa M. Matzke,Katrina M. Waters,Thomas O. Metz,Jon M. Jacobs,Amy C. Sims,Ralph S. Baric,Joel G. Pounds,Bobbie-Jo M. Webb-Robertson
#t2011
#cBioinformatics
#index3136402
#% 
#!
  
#*miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants.
#@Xiaozeng Yang,Lei Li
#t2011
#cBioinformatics
#index3136184
#% 
#!
  
#*Absynte: a web tool to analyze the evolution of orthologous archaeal and bacterial gene clusters.
#@Arnaud Despalins,Souhir Marsit,Jacques Oberto
#t2011
#cBioinformatics
#index3136325
#% 
#!
  
#*FLASH: fast length adjustment of short reads to improve genome assemblies.
#@Tanja Magoc,Steven L. Salzberg
#t2011
#cBioinformatics
#index3136238
#% 
#!
  
#*The use of semiparametric mixed models to analyze PamChip peptide array data: an application to an oncology experiment.
#@Pushpike Jayantha Thilakarathne,Lieven Clement,Dan Lin,Ziv Shkedy,Adetayo Kasim,Willem Talloen,Matthias Versele,Geert Verbeke
#t2011
#cBioinformatics
#index3136249
#% 
#!
  
#*Large-scale dynamic gene regulatory network inference combining differential equation models with local dynamic Bayesian network analysis.
#@Zheng Li,Ping Li,Arun Krishnan,Jingdong Liu
#t2011
#cBioinformatics
#index3136350
#% 
#!
  
#*TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata.
#@Meg Pirrung,Ryan Kennedy,J. Gregory Caporaso,Jesse Stombaugh,Doug Wendel,Rob Knight
#t2011
#cBioinformatics
#index3136291
#% 
#!
  
#*Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases.
#@Tiago J. S. Lopes,Martin Schaefer,Jason Shoemaker,Yukiko Matsuoka,Jean-Fred Fontaine,Gabriele Neumann,Miguel A. Andrade-Navarro,Yoshihiro Kawaoka,Hiroaki Kitano
#t2011
#cBioinformatics
#index3136365
#% 
#!
  
#*The LabelHash Server and Tools for substructure-based functional annotation.
#@Mark Moll,Drew H. Bryant,Lydia E. Kavraki
#t2011
#cBioinformatics
#index3136179
#% 
#!
  
#*Improving the detection of transmembrane β-barrel chains with N-to-1 extreme learning machines.
#@Castrense Savojardo,Piero Fariselli,Rita Casadio
#t2011
#cBioinformatics
#index3136197
#% 
#!
  
#*A memory-efficient data structure representing exact-match overlap graphs with application for next-generation DNA assembly.
#@Hieu Dinh,Sanguthevar Rajasekaran
#t2011
#cBioinformatics
#index3136307
#% 
#!
  
#*MethylCoder: software pipeline for bisulfite-treated sequences.
#@Brent Pedersen,Tzung-Fu Hsieh,Christian Ibarra,Robert L. Fischer
#t2011
#cBioinformatics
#index3136359
#% 
#!
  
#*Stage prediction of embryonic stem cell differentiation from genome-wide expression data.
#@Lan Zagar,Francesca Mulas,Silvia Garagna,Maurizio Zuccotti,Riccardo Bellazzi,Blaz Zupan
#t2011
#cBioinformatics
#index3136202
#% 
#!
  
#*TFRank: network-based prioritization of regulatory associations underlying transcriptional responses.
#@Joana P. Gonçalves,Alexandre P. Francisco,Nuno P. Mira,Miguel C. Teixeira,Isabel Sá-Correia,Arlindo L. Oliveira,Sara C. Madeira
#t2011
#cBioinformatics
#index3136269
#% 
#!
  
#*Spatial clustering of protein binding sites for template based protein docking.
#@Anisah W. Ghoorah,Marie-Dominique Devignes,Malika Smaïl-Tabbone,David W. Ritchie
#t2011
#cBioinformatics
#index3136267
#% 
#!
  
#*MetATT: a web-based metabolomics tool for analyzing time-series and two-factor datasets.
#@Jianguo Xia,Igor Sinelnikov,David S. Wishart
#t2011
#cBioinformatics
#index3136385
#% 
#!
  
#*nucleR: a package for non-parametric nucleosome positioning.
#@Oscar Flores,Modesto Orozco
#t2011
#cBioinformatics
#index3136312
#% 
#!
  
#*TotalReCaller: improved accuracy and performance via integrated alignment and base-calling.
#@Fabian Menges,Giuseppe Narzisi,Bud Mishra
#t2011
#cBioinformatics
#index3136380
#% 
#!
  
#*ISPyB: an information management system for synchrotron macromolecular crystallography.
#@Solange Delagenière,Patrice Brenchereau,Ludovic Launer,Alun W. Ashton,Ricardo Leal,Stéphanie Veyrier,José Gabadinho,Elspeth J. Gordon,Samuel D. Jones,Karl Erik Levik,Seán M. McSweeney,Stéphanie Monaco,Max Nanao,Darren Spruce,Olof Svensson,Martin A. Walsh,Gordon A. Leonard
#t2011
#cBioinformatics
#index3136261
#% 
#!
  
#*UCHIME improves sensitivity and speed of chimera detection.
#@Robert C. Edgar,Brian J. Haas,Jose C. Clemente,Christopher Quince,Rob Knight
#t2011
#cBioinformatics
#index3136351
#% 
#!
  
#*Robust relative compression of genomes with random access.
#@Sebastian Deorowicz,Szymon Grabowski
#t2011
#cBioinformatics
#index3136240
#% 
#!
  
#*Positional integratomic approach in identification of genomic candidate regions for Parkinson's disease.
#@Ales Maver,Borut Peterlin
#t2011
#cBioinformatics
#index3136278
#% 
#!
  
#*Protein-protein binding affinity prediction on a diverse set of structures.
#@Iain H. Moal,Rudi Agius,Paul A. Bates
#t2011
#cBioinformatics
#index3136297
#% 
#!
  
#*: a program for phylogenetic comparative analyses with meta-analysis.
#@Marc J. Lajeunesse
#t2011
#cBioinformatics
#index3136357
#% 
#!
  
#*SDRS - an algorithm for analyzing large-scale dose-response data.
#@Rui-Ru Ji,Nathan O. Siemers,Ming Lei,Liang Schweizer,Robert E. Bruccoleri
#t2011
#cBioinformatics
#index3136332
#% 
#!
  
#*Robustness portraits of diverse biological networks conserved despite order-of-magnitude parameter uncertainty.
#@Anthony R. Soltis,Jeffrey J. Saucerman
#t2011
#cBioinformatics
#index3136232
#% 
#!
  
#*An empirical comparison of several recent epistatic interaction detection methods.
#@Yue Wang,Guimei Liu,Mengling Feng,Limsoon Wong
#t2011
#cBioinformatics
#index3136196
#% 
#!
  
#*An efficient network querying method based on conditional random fields.
#@Qiang Huang,Ling-Yun Wu,Xiang-Sun Zhang
#t2011
#cBioinformatics
#index3136176
#% 
#!
  
#*AUC-based biomarker ensemble with an application on gene scores predicting low bone mineral density.
#@X. G. Zhao,W. Dai,Y. Li,L. Tian
#t2011
#cBioinformatics
#index3136288
#% 
#!
  
#*Gee Fu: a sequence version and web-services database tool for genomic assembly, genome feature and NGS data.
#@Ricardo Ramirez-Gonzalez,Mario Caccamo,Daniel MacLean
#t2011
#cBioinformatics
#index3136362
#% 
#!
  
#*FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution.
#@Huanying Ge,Kejun Liu,Todd Juan,Fang Fang,Matthew Newman,Wolfgang Hoeck
#t2011
#cBioinformatics
#index3136324
#% 
#!
  
#*Response to "Comments on 'Bayesian variable selection for disease classification using gene expression data'".
#@Xin-Yuan Song,Zhao-Hua Lu
#t2011
#cBioinformatics
#index3136173
#% 
#!
  
#*Simple high-throughput annotation pipeline (SHAP).
#@Matthew Z. DeMaere,Federico M. Lauro,Torsten Thomas,Sheree Yau,Ricardo Cavicchioli
#t2011
#cBioinformatics
#index3136279
#% 
#!
  
#*Elemental composition determination based on MS.
#@Miguel Rojas-Chertó,Piotr T. Kasper,Egon L. Willighagen,Rob J. Vreeken,Thomas Hankemeier,Theo H. Reijmers
#t2011
#cBioinformatics
#index3136162
#% 
#!
  
#*Metannogen: annotation of biological reaction networks.
#@Christoph Gille,Katrin Hübner,Andreas Hoppe,Hermann-Georg Holzhütter
#t2011
#cBioinformatics
#index3136207
#% 
#!
  
#*SVA: software for annotating and visualizing sequenced human genomes.
#@Dongliang Ge,Elizabeth K. Ruzzo,Kevin V. Shianna,Min He,Kimberly Pelak,Erin L. Heinzen,Anna C. Need,Elizabeth T. Cirulli,Jessica M. Maia,Samuel P. Dickson,Mingfu Zhu,Abanish Singh,Andrew S. Allen,David B. Goldstein
#t2011
#cBioinformatics
#index3136374
#% 
#!
  
#*cSSMD: assessing collective activity for addressing off-target effects in genome-scale RNA interference screens.
#@Xiaohua Douglas Zhang,Francesca Santini,Raul Lacson,Shane D. Marine,Qian Wu,Luca Benetti,Ruojing Yang,Alex McCampbell,Joel P. Berger,Dawn M. Toolan,Erica M. Stec,Daniel J. Holder,Keith A. Soper,Joseph F. Heyse,Marc Ferrer
#t2011
#cBioinformatics
#index3136383
#% 
#!
  
#*OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents.
#@Nona Naderi,Thomas Kappler,Christopher J. O. Baker,René Witte
#t2011
#cBioinformatics
#index3136255
#% 
#!
  
#*A biclustering algorithm for extracting bit-patterns from binary datasets.
#@Domingo S. Rodríguez-Baena,Antonio J. Pérez-Pulido,Jesús S. Aguilar-Ruiz
#t2011
#cBioinformatics
#index3136342
#% 
#!
  
#*Simple Neurite Tracer: open source software for reconstruction, visualization and analysis of neuronal processes.
#@Mark Longair,Dean A. Baker,J. Douglas Armstrong
#t2011
#cBioinformatics
#index3136333
#% 
#!
  
#*RNAG: a new Gibbs sampler for predicting RNA secondary structure for unaligned sequences.
#@Donglai Wei,Lauren V. Alpert,Charles E. Lawrence
#t2011
#cBioinformatics
#index3136284
#% 
#!
  
#*Contextual analysis of RNAi-based functional screens using interaction networks.
#@Orland R. Gonzalez,Ralf Zimmer
#t2011
#cBioinformatics
#index3136244
#% 
#!
  
#*Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).
#@Gregory R. Grant,Michael H. Farkas,Angel D. Pizarro,Nicholas F. Lahens,Jonathan Schug,Brian P. Brunk,Christian J. Stoeckert Jr.,John B. Hogenesch,Eric A. Pierce
#t2011
#cBioinformatics
#index3136187
#% 
#!
  
#*SEAL: a distributed short read mapping and duplicate removal tool.
#@Luca Pireddu,Simone Leo,Gianluigi Zanetti
#t2011
#cBioinformatics
#index3136289
#% 
#!
  
#*Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction.
#@Zengming Zhang,Yu Li,Biaoyang Lin,Michael Schroeder,Bingding Huang
#t2011
#cBioinformatics
#index3136225
#% 
#!
  
#*Computational discovery of human coding and non-coding transcripts with conserved splice sites.
#@Dominic Rose,Michael Hiller,Katharina Schutt,Jörg Hackermüller,Rolf Backofen,Peter F. Stadler
#t2011
#cBioinformatics
#index3136375
#% 
#!
  
#*A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites.
#@Ivan V. Kulakovskiy,A. A. Belostotsky,A. S. Kasianov,Natalie G. Esipova,Y. A. Medvedeva,I. A. Eliseeva,Vsevolod Makeev
#t2011
#cBioinformatics
#index3136201
#% 
#!
  
#*Feature-based 3D motif filtering for ribosomal RNA.
#@Ying Shen,Hau-San Wong,Shaohong Zhang,Zhiwen Yu
#t2011
#cBioinformatics
#index3136296
#% 
#!
  
#*Java bioinformatics analysis web services for multiple sequence alignment - JABAWS: MSA.
#@Peter V. Troshin,James B. Procter,Geoffrey J. Barton
#t2011
#cBioinformatics
#index3136403
#% 
#!
  
#*: collaborative data analysis.
#@Florian Battke,Stephan Symons,Alexander Herbig,Kay Nieselt
#t2011
#cBioinformatics
#index3136210
#% 
#!
  
#*Making whole genome multiple alignments usable for biologists.
#@Daniel Blankenberg,James Taylor,Anton Nekrutenko,The Galaxy Team
#t2011
#cBioinformatics
#index3136221
#% 
#!
  
#*Parameter estimation of kinetic models from metabolic profiles: two-phase dynamic decoupling method.
#@Gengjie Jia,Gregory Stephanopoulos,Rudiyanto Gunawan
#t2011
#cBioinformatics
#index3136294
#% 
#!
  
#*SCLpred: protein subcellular localization prediction by N-to-1 neural networks.
#@Catherine Mooney,Yong-Hong Wang,Gianluca Pollastri
#t2011
#cBioinformatics
#index3136283
#% 
#!
  
#*Aligning short reads to reference alignments and trees.
#@Simon A. Berger,Alexandros Stamatakis
#t2011
#cBioinformatics
#index3136230
#% 
#!
  
#*Gaia: automated quality assessment of protein structure models.
#@Pradeep Kota,Feng Ding,Srinivas Ramachandran,Nikolay V. Dokholyan
#t2011
#cBioinformatics
#index3136156
#% 
#!
  
#*Automatic extraction of angiogenesis bioprocess from text.
#@Xinglong Wang,Iain McKendrick,Ian Barrett,Ian Dix,Tim French,Jun-ichi Tsujii,Sophia Ananiadou
#t2011
#cBioinformatics
#index3136254
#% 
#!
  
#*: an R/Bioconductor package for performance assessment and comparison of survival models.
#@Markus S. Schröder,Aedín C. Culhane,John Quackenbush,Benjamin Haibe-Kains
#t2011
#cBioinformatics
#index3136272
#% 
#!
  
#*The strength of intron donor splice sites in human genes displays a bell-shaped pattern.
#@Kai Wang,Rasmus Wernersson,Søren Brunak
#t2011
#cBioinformatics
#index3136268
#% 
#!
  
#*Distance-based differential analysis of gene curves.
#@Christopher Minas,Simon J. Waddell,Giovanni Montana
#t2011
#cBioinformatics
#index3136258
#% 
#!
  
#*RightField: embedding ontology annotation in spreadsheets.
#@Katy Wolstencroft,Stuart Owen,Matthew Horridge,Olga Krebs,Wolfgang Mueller,Jacky L. Snoep,Franco du Preez,Carole A. Goble
#t2011
#cBioinformatics
#index3136218
#% 
#!
  
#*PhEA: phenotype enrichment analysis for insect functional genomics.
#@Meng-Pin Weng,Ben-Yang Liao
#t2011
#cBioinformatics
#index3136231
#% 
#!
  
#*A framework for analytical characterization of monoclonal antibodies based on reactivity profiles in different tissues.
#@Elizabeth Rossin,Tsung I. Lin,Hsiu J. Ho,Steven J. Mentzer,Saumyadipta Pyne
#t2011
#cBioinformatics
#index3136245
#% 
#!
  
#*PGAT: a multistrain analysis resource for microbial genomes.
#@Mitchell J. Brittnacher,Christine Fong,H. S. Hayden,M. A. Jacobs,Matthew Radey,Laurence Rohmer
#t2011
#cBioinformatics
#index3136363
#% 
#!
  
#*PepCrawler: a fast RRT-based algorithm for high-resolution refinement and binding affinity estimation of peptide inhibitors.
#@Elad Donsky,Haim J. Wolfson
#t2011
#cBioinformatics
#index3136190
#% 
#!
  
#*GlobalMIT: learning globally optimal dynamic bayesian network with the mutual information test criterion.
#@Nguyen Xuan Vinh,Madhu Chetty,Ross L. Coppel,Pramod P. Wangikar
#t2011
#cBioinformatics
#index3136213
#% 
#!
  
#*A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data.
#@Heng Li
#t2011
#cBioinformatics
#index3136199
#% 
#!
  
#*Kaviar: an accessible system for testing SNV novelty.
#@Gustavo Glusman,Juan Caballero,Denise E. Mauldin,Leroy Hood,Jared C. Roach
#t2011
#cBioinformatics
#index3136396
#% 
#!
  
#*DECOD: fast and accurate discriminative DNA motif finding.
#@Peter Huggins,Shan Zhong,Idit Shiff,Rachel Beckerman,Oleg Laptenko,Carol Prives,Marcel H. Schulz,Itamar Simon,Ziv Bar-Joseph
#t2011
#cBioinformatics
#index3136233
#% 
#!
  
#*PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs).
#@Augustin Luna,Margot Sunshine,Martijn P. van Iersel,Mirit I. Aladjem,Kurt W. Kohn
#t2011
#cBioinformatics
#index3136344
#% 
#!
  
#*Gaussian interaction profile kernels for predicting drug-target interaction.
#@Twan van Laarhoven,Sander B. Nabuurs,Elena Marchiori
#t2011
#cBioinformatics
#index3136352
#% 
#!
  
#*Mauve Assembly Metrics.
#@Aaron E. Darling,Andrew J. Tritt,Jonathan A. Eisen,Marc T. Facciotti
#t2011
#cBioinformatics
#index3136389
#% 
#!
  
#*HHfrag: HMM-based fragment detection using HHpred.
#@Ivan Kalev,Michael Habeck
#t2011
#cBioinformatics
#index3136204
#% 
#!
  
#*Reconstructing transcription factor activities in hierarchical transcription network motifs.
#@Andrea Ocone,Guido Sanguinetti
#t2011
#cBioinformatics
#index3136177
#% 
#!
  
#*ontoCAT: an R package for ontology traversal and search.
#@Natalja Kurbatova,Tomasz Adamusiak,Pavel Kurnosov,Morris A. Swertz,Misha Kapushesky
#t2011
#cBioinformatics
#index3136183
#% 
#!
  
#*RIP: the regulatory interaction predictor - a machine learning-based approach for predicting target genes of transcription factors.
#@Tobias Bauer,Roland Eils,Rainer König
#t2011
#cBioinformatics
#index3136224
#% 
#!
  
#*APCluster: an R package for affinity propagation clustering.
#@Ulrich Bodenhofer,Andreas Kothmeier,Sepp Hochreiter
#t2011
#cBioinformatics
#index3136316
#% 
#!
  
#*An ensemble biclustering approach for querying gene expression compendia with experimental lists.
#@Riet De Smet,Kathleen Marchal
#t2011
#cBioinformatics
#index3136246
#% 
#!
  
#*NetDS: a Cytoscape plugin to analyze the robustness of dynamics and feedforward/feedback loop structures of biological networks.
#@Duc-Hau Le,Yung-Keun Kwon
#t2011
#cBioinformatics
#index3136172
#% 
#!
  
#*The Cardiac Atlas Project - an imaging database for computational modeling and statistical atlases of the heart.
#@Carissa G. Fonseca,Michael Backhaus,David A. Bluemke,Randall Britten,Jae Do Chung,Brett R. Cowan,Ivo D. Dinov,J. Paul Finn,Peter J. Hunter,Alan H. Kadish,Daniel C. Lee,Joao A. C. Lima,Pau Medrano-Gracia,Kalyanam Shivkumar,Avan Suinesiaputra,Wenchao Tao,Alistair A. Young
#t2011
#cBioinformatics
#index3136323
#% 
#!
  
#*Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA.
#@Atanas Kamburov,Rachel Cavill,Timothy M. D. Ebbels,Ralf Herwig,Hector C. Keun
#t2011
#cBioinformatics
#index3136163
#% 
#!
  
#*Parent-specific copy number in paired tumor-normal studies using circular binary segmentation.
#@Adam B. Olshen,Henrik Bengtsson,Pierre Neuvial,Paul T. Spellman,Richard A. Olshen,Venkatraman E. Seshan
#t2011
#cBioinformatics
#index3136377
#% 
#!
  
#*AMIGO, a toolbox for advanced model identification in systems biology using global optimization.
#@Eva Balsa-Canto,Julio R. Banga
#t2011
#cBioinformatics
#index3136159
#% 
#!
  
#*Sensitive and fast mapping of di-base encoded reads.
#@Farhad Hormozdiari,Faraz Hach,Süleyman Cenk Sahinalp,Evan E. Eichler,Can Alkan
#t2011
#cBioinformatics
#index3136337
#% 
#!
  
#*A probabilistic method for the detection and genotyping of small indels from population-scale sequence data.
#@Vikas Bansal,Ondrej Libiger
#t2011
#cBioinformatics
#index3136382
#% 
#!
  
#*A tree-based approach for motif discovery and sequence classification.
#@Rui Yan,Paul C. Boutros,Igor Jurisica
#t2011
#cBioinformatics
#index3136227
#% 
#!
  
#*KvSNP: accurately predicting the effect of genetic variants in voltage-gated potassium channels.
#@L. F. Stead,I. C. Wood,David R. Westhead
#t2011
#cBioinformatics
#index3136193
#% 
#!
  
#*Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates.
#@Yuedong Yang,Eshel Faraggi,Huiying Zhao,Yaoqi Zhou
#t2011
#cBioinformatics
#index3136400
#% 
#!
  
#*RNASAlign: RNA Structural Alignment System.
#@Thomas K. F. Wong,Kwok-Lung Wan,Bay-Yuan Hsu,Brenda W. Y. Cheung,Wing-Kai Hon,Tak Wah Lam,Siu-Ming Yiu
#t2011
#cBioinformatics
#index3136171
#% 
#!
  
#*NASP: a parallel program for identifying evolutionarily conserved nucleic acid secondary structures from nucleotide sequence alignments.
#@J. Y. Semegni,M. Wamalwa,R. Gaujoux,G. W. Harkins,A. Gray,D. P. Martin
#t2011
#cBioinformatics
#index3136259
#% 
#!
  
#*Metavir: a web server dedicated to virome analysis.
#@Simon Roux,Michaël Faubladier,Antoine Mahul,Nils Paulhe,Aurélien Bernard,Didier Debroas,François Enault
#t2011
#cBioinformatics
#index3136309
#% 
#!
  
#*Extending KNIME for next-generation sequencing data analysis.
#@Bernd Jagla,Bernd Wiswedel,Jean-Yves Coppée
#t2011
#cBioinformatics
#index3136282
#% 
#!
  
#*3FunMap: full-sib family functional mapping of dynamic traits.
#@Chunfa Tong,Zhong Wang,Bo Zhang,Jisen Shi,Rongling Wu
#t2011
#cBioinformatics
#index3136273
#% 
#!
  
#*PTPan - overcoming memory limitations in oligonucleotide string matching for primer/probe design.
#@Tilo Eißler,Christopher P. Hodges,Harald Meier
#t2011
#cBioinformatics
#index3136330
#% 
#!
  
#*Reconstructing the architecture of the ancestral amniote genome.
#@Aïda Ouangraoua,Eric Tannier,Cedric Chauve
#t2011
#cBioinformatics
#index3136186
#% 
#!
  
#*Tree-structured algorithm for long weak motif discovery.
#@He Quan Sun,Malcolm Yoke-Hean Low,Wen Jing Hsu,Ching-Wai Tan,Jagath C. Rajapakse
#t2011
#cBioinformatics
#index3136302
#% 
#!
  
#*Enhancing the rate of scaffold discovery with diversity-oriented prioritization.
#@Sanjay Joshua Swamidass,Bradley T. Calhoun,Joshua A. Bittker,Nicole E. Bodycombe,Paul A. Clemons
#t2011
#cBioinformatics
#index3136372
#% 
#!
  
#*: new tools for the analysis of genome-wide SNP data.
#@Thibaut Jombart,Ismaïl Ahmed
#t2011
#cBioinformatics
#index3136355
#% 
#!
  
#*Varying coefficient model for gene-environment interaction: a non-linear look.
#@Shujie Ma,Lijian Yang,Roberto Romero,Yuehua Cui
#t2011
#cBioinformatics
#index3136386
#% 
#!
  
#*StochKit2: software for discrete stochastic simulation of biochemical systems with events.
#@Kevin R. Sanft,Sheng Wu,Min Roh,Jin Fu,Rone Kwei Lim,Linda R. Petzold
#t2011
#cBioinformatics
#index3136399
#% 
#!
  
#*MGV: a generic graph viewer for comparative omics data.
#@Stephan Symons,Kay Nieselt
#t2011
#cBioinformatics
#index3136219
#% 
#!
  
#*A procedure to statistically evaluate agreement of differential expression for cross-species genomics.
#@Stan Pounds,Cuilan Lani Gao,Robert A. Johnson,Karen D. Wright,Helen Poppleton,David Finkelstein,Sarah E. S. Leary,Richard J. Gilbertson
#t2011
#cBioinformatics
#index3136271
#% 
#!
  
#*SEED: efficient clustering of next-generation sequences.
#@Ergude Bao,Tao Jiang,Isgouhi Kaloshian,Thomas Girke
#t2011
#cBioinformatics
#index3136198
#% 
#!
  
#*: an R-package to identify regional variations in genomic data.
#@Francesco Ferrari,Aldo Solari,Cristina Battaglia,Silvio Bicciato
#t2011
#cBioinformatics
#index3136308
#% 
#!
  
#*DivBayes and SubT: exploring species diversification using Bayesian statistics.
#@Martin Ryberg,R. Henrik Nilsson,P. Brandon Matheny
#t2011
#cBioinformatics
#index3136391
#% 
#!
  
#*Alignment of distantly related protein structures: algorithm, bound and implications to homology modeling.
#@Sheng Wang,Jian Peng,Jinbo Xu
#t2011
#cBioinformatics
#index3136336
#% 
#!
  
#*High-dimensional bolstered error estimation.
#@Chao Sima,Ulisses Braga-Neto,Edward R. Dougherty
#t2011
#cBioinformatics
#index3136191
#% 
#!
  
#*genBlastG: using BLAST searches to build homologous gene models.
#@Rong She,Jeffrey Shih-Chieh Chu,Bora Uyar,Jun Wang,Ke Wang,Nansheng Chen
#t2011
#cBioinformatics
#index3136208
#% 
#!
  
#*A powerful approach for association analysis incorporating imprinting effects.
#@Fan Xia,Ji-Yuan Zhou,Wing Kam Fung
#t2011
#cBioinformatics
#index3136358
#% 
#!
  
#*Genomic data integration using guided clustering.
#@Matthias Maneck,Alexandra Schrader,Dieter Kube,Rainer Spang
#t2011
#cBioinformatics
#index3136189
#% 
#!
  
#*Hidden conformations in protein structures.
#@Haim Ashkenazy,Ron Unger,Yossef Kliger
#t2011
#cBioinformatics
#index3136234
#% 
#!
  
#*rBioNet: A COBRA toolbox extension for econstructing high-quality chemical works.
#@Stefan Gretar Thorleifsson,Ines Thiele
#t2011
#cBioinformatics
#index3136164
#% 
#!
  
#*BRISK - research-oriented storage kit for biology-related data.
#@Alan Tan,Ben W. Tripp,Denise Daley
#t2011
#cBioinformatics
#index3136369
#% 
#!
  
#*Metab: an R package for high-throughput analysis of metabolomics data generated by GC-MS.
#@Raphael B. M. Aggio,Silas Granato Villas-Bôas,Katya Ruggiero
#t2011
#cBioinformatics
#index3136360
#% 
#!
  
#*iMod: multipurpose normal mode analysis in internal coordinates.
#@José Ramón Lopéz-Blanco,José Ignacio Garzón,Pablo Chacón
#t2011
#cBioinformatics
#index3136320
#% 
#!
  
#*Probabilistic alignments with quality scores: an application to short-read mapping toward accurate SNP/indel detection.
#@Michiaki Hamada,Edward Wijaya,Martin C. Frith,Kiyoshi Asai
#t2011
#cBioinformatics
#index3136322
#% 
#!
  
#*: a database of potentially polymorphic insertions for use in primate phylogeny and population genetics.
#@Christina M. Bergey
#t2011
#cBioinformatics
#index3136206
#% 
#!
  
#*SpliceTrap: a method to quantify alternative splicing under single cellular conditions.
#@Jie Wu,Martin Akerman,Shuying Sun,W. Richard McCombie,Adrian R. Krainer,Michael Q. Zhang
#t2011
#cBioinformatics
#index3136317
#% 
#!
  
#*CSO validator: improving manual curation workflow for biological pathways.
#@Euna Jeong,Masao Nagasaki,Emi Ikeda,Yayoi Sekiya,Ayumu Saito,Satoru Miyano
#t2011
#cBioinformatics
#index3136368
#% 
#!
  
#*PDBpaint, a visualization webservice to tag protein structures with sequence annotations.
#@David Fournier,Miguel A. Andrade-Navarro
#t2011
#cBioinformatics
#index3136379
#% 
#!
  
#*Unsupervised detection of genes of influence in lung cancer using biological networks.
#@Anna Goldenberg,Sara Mostafavi,Gerald Quon,Paul C. Boutros,Quaid Morris
#t2011
#cBioinformatics
#index3136235
#% 
#!
  
#*linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type.
#@Alex T. Kalinka,Pavel Tomancak
#t2011
#cBioinformatics
#index3136311
#% 
#!
  
#*VISTA Region Viewer (RViewer) - a computational system for prioritizing genomic intervals for biomedical studies.
#@Igor Lukashin,Pavel S. Novichkov,Dario Boffelli,Alex R. Paciorkowski,Simon Minovitsky,Song Yang,Inna Dubchak
#t2011
#cBioinformatics
#index3136299
#% 
#!
  
#*Bioinformatics challenges for personalized medicine.
#@Guy Haskin Fernald,Emidio Capriotti,Roxana Daneshjou,Konrad J. Karczewski,Russ B. Altman
#t2011
#cBioinformatics
#index3136394
#% 
#!
  
#*mapDamage: testing for damage patterns in ancient DNA sequences.
#@Aurelien Ginolhac,Morten Rasmussen,M. Thomas P. Gilbert,Eske Willerslev,Ludovic Orlando
#t2011
#cBioinformatics
#index3136345
#% 
#!
  
#*Biologically inspired EM image alignment and neural reconstruction.
#@Seymour Knowles-Barley,Nancy J. Butcher,Ian A. Meinertzhagen,J. Douglas Armstrong
#t2011
#cBioinformatics
#index3136252
#% 
#!
  
#*Xwalk: computing and visualizing distances in cross-linking experiments.
#@Abdullah Kahraman,Lars Malmström,Ruedi Aebersold
#t2011
#cBioinformatics
#index3136226
#% 
#!
  
#*Simultaneous recognition and segmentation of cells: application in .
#@Lei Qu,Fuhui Long,Xiao Liu,Stuart K. Kim,Eugene W. Myers,Hanchuan Peng
#t2011
#cBioinformatics
#index3136153
#% 
#!
  
#*Annotation concept synthesis and enrichment analysis: a logic-based approach to the interpretation of high-throughput experiments.
#@Mikhail Jiline,Stan Matwin,Marcel Turcotte
#t2011
#cBioinformatics
#index3136318
#% 
#!
  
#*Inferring statin-induced gene regulatory relationships in primary human hepatocytes.
#@Adrian Schröder,Johannes Wollnik,Clemens Wrzodek,Andreas Dräger,Michael Bonin,Oliver Burk,Maria Thomas,Wolfgang E. Thasler,Ulrich M. Zanger,Andreas Zell
#t2011
#cBioinformatics
#index3136211
#% 
#!
  
#*False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions.
#@Joseph K. Pickrell,Daniel J. Gaffney,Yoav Gilad,Jonathan K. Pritchard
#t2011
#cBioinformatics
#index3136158
#% 
#!
  
#*Fast and accurate prediction of protein side-chain conformations.
#@Shide Liang,Dandan Zheng,Chi Zhang,Daron M. Standley
#t2011
#cBioinformatics
#index3136217
#% 
#!
  
#*Semi-supervised learning improves gene expression-based prediction of cancer recurrence.
#@Mingguang Shi,Bing Zhang
#t2011
#cBioinformatics
#index3136170
#% 
#!
  
#*Identifying associations between amino acid changes and meta information in alignments.
#@Lucía Spangenberg,Florian Battke,Martí Graña,Kay Nieselt,Hugo Naya
#t2011
#cBioinformatics
#index3136274
#% 
#!
  
#*Enriching targeted sequencing experiments for rare disease alleles.
#@Todd L. Edwards,Zhuo Song,Chun Li
#t2011
#cBioinformatics
#index3136182
#% 
#!
  
#*Supporting tool suite for production proteomics.
#@Zeqiang Ma,David L. Tabb,Joseph Burden,Matthew Chambers,Matthew B. Cox,Michael J. Cantrell,Amy-Joan L. Ham,Michael D. Litton,Michael R. Oreto,William C. Schultz,Scott M. Sobecki,Tina Y. Tsui,Gregory R. Wernke,Daniel C. Liebler
#t2011
#cBioinformatics
#index3136247
#% 
#!
  
#*CAM-CM: a signal deconvolution tool for dynamic contrast-enhanced imaging of complex tissues.
#@Li Chen,Tsung-Han Chan,Peter L. Choyke,Elizabeth M. C. Hillman,Chong-Yung Chi,Zaver M. Bhujwalla,Ge Wang,Sean S. Wang,Zsolt Szabo,Yue Wang
#t2011
#cBioinformatics
#index3136373
#% 
#!
  
#*A phylogenetic mixture model for the identification of functionally divergent protein residues.
#@Daniel Gaston,Edward Susko,Andrew J. Roger
#t2011
#cBioinformatics
#index3136339
#% 
#!
  
#*Noise reduction in genome-wide perturbation screens using linear mixed-effect models.
#@Danni Yu,John Danku,Ivan Baxter,Sungjin Kim,Olena K. Vatamaniuk,David E. Salt,Olga Vitek
#t2011
#cBioinformatics
#index3136216
#% 
#!
  
#*SpEED: fast computation of sensitive spaced seeds.
#@Lucian Ilie,Silvana Ilie,Anahita Mansouri Bigvand
#t2011
#cBioinformatics
#index3136181
#% 
#!
  
#*Correlated evolution of transcription factors and their binding sites.
#@Shu Yang,Hari Krishna Yalamanchili,Xinran Li,Kwok-Ming Yao,Pak Chung Sham,Michael Q. Zhang,Junwen Wang
#t2011
#cBioinformatics
#index3136165
#% 
#!
  
#*RASP: rapid modeling of protein side chain conformations.
#@Zhichao Miao,Yang Cao,Taijiao Jiang
#t2011
#cBioinformatics
#index3136321
#% 
#!
  
#*JSBML: a flexible Java library for working with SBML.
#@Andreas Dräger,Nicolas Rodriguez,Marine Dumousseau,Alexander Dörr,Clemens Wrzodek,Nicolas Le Novère,Andreas Zell,Michael Hucka
#t2011
#cBioinformatics
#index3136253
#% 
#!
  
#*FACIL: Fast and Accurate Genetic Code Inference and Logo.
#@Bas E. Dutilh,Rasa Jurgelenaite,Radek Szklarczyk,Sacha A. F. T. van Hijum,Harry R. Harhangi,Markus Schmid,Bart de Wild,Kees-Jan Françoijs,Henk Stunnenberg,Marc Strous,Mike S. M. Jetten,Huub J. M. Op den Camp,Martijn A. Huynen
#t2011
#cBioinformatics
#index3136174
#% 
#!
  
#*COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes.
#@Anna Vangone,Raffaele Spinelli,Vittorio Scarano,Luigi Cavallo,Romina Oliva
#t2011
#cBioinformatics
#index3136188
#% 
#!
  
#*A statistical framework for biomarker discovery in metabolomic time course data.
#@Maurice Berk,Timothy M. D. Ebbels,Giovanni Montana
#t2011
#cBioinformatics
#index3136280
#% 
#!
  
#*RseqFlow: workflows for RNA-Seq data analysis.
#@Ying Wang,Gaurang Mehta,Rajiv Mayani,Jingxi Lu,Tade Souaiaia,Yangho Chen,Andrew P. Clark,Hee Jae Yoon,Lin Wan,Oleg V. Evgrafov,James A. Knowles,Ewa Deelman,Ting Chen
#t2011
#cBioinformatics
#index3136361
#% 
#!
  
#*Question answering systems in biology and medicine - the time is now.
#@Jonathan D. Wren
#t2011
#cBioinformatics
#index3136295
#% 
#!
  
#*Comparative studies of assembly tools for next-generation sequencing technologies.
#@Yong Lin,Jian Li,Hui Shen,Lei Zhang,Christopher J. Papasian,Hong-Wen Deng
#t2011
#cBioinformatics
#index3136169
#% 
#!
  
#*SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences.
#@Craig T. Armstrong,Thomas L. Vincent,Peter J. Green,Derek N. Woolfson
#t2011
#cBioinformatics
#index3136366
#% 
#!
  
#*The strength of chemical linkage as a criterion for pruning metabolic graphs.
#@Wanding Zhou,Luay Nakhleh
#t2011
#cBioinformatics
#index3136346
#% 
#!
  
#*CytoscapeRPC: a plugin to create, modify and query Cytoscape networks from scripting languages.
#@Jan Bot,Marcel J. T. Reinders
#t2011
#cBioinformatics
#index3136270
#% 
#!
  
#*MetaABC - an integrated metagenomics platform for data adjustment, binning and clustering.
#@Chien-Hao Su,Ming-Tsung Hsu,Tse-Yi Wang,Sufeng Chiang,Jen-Hao Cheng,Francis C. Weng,Cheng-Yan Kao,Daryi Wang,Huai-Kuang Tsai
#t2011
#cBioinformatics
#index3136167
#% 
#!
  
#*spacodiR: structuring of phylogenetic diversity in ecological communities.
#@Jonathan M. Eastman,C. E. Timothy Paine,Olivier J. Hardy
#t2011
#cBioinformatics
#index3136243
#% 
#!
  
#*Comparing bioassay response and similarity ensemble approaches to probing protein pharmacology.
#@Bin Chen,Kevin J. McConnell,Nikil Wale,David J. Wild,Eric M. Gifford
#t2011
#cBioinformatics
#index3136152
#% 
#!
  
#*Knime4Bio: a set of custom nodes for the interpretation of next-generation sequencing data with KNIME.
#@Pierre Lindenbaum,Solena Le Scouarnec,Vincent Portero,Richard Redon
#t2011
#cBioinformatics
#index3136250
#% 
#!
  
#*Revisiting the negative example sampling problem for predicting protein-protein interactions.
#@Yungki Park,Edward M. Marcotte
#t2011
#cBioinformatics
#index3136397
#% 
#!
  
#*TimeTree2: species divergence times on the iPhone.
#@Sudhir Kumar,S. Blair Hedges
#t2011
#cBioinformatics
#index3136388
#% 
#!
  
#*PIDO: the primary immunodeficiency disease ontology.
#@Nico Adams,Robert Hoehndorf,Georgios V. Gkoutos,Gesine Hansen,Christian Hennig
#t2011
#cBioinformatics
#index3136319
#% 
#!
  
#*A Grid-enabled web portal for NMR structure refinement with AMBER.
#@Ivano Bertini,David A. Case,Lucio Ferella,Andrea Giachetti,Antonio Rosato
#t2011
#cBioinformatics
#index3136275
#% 
#!
  
#*- integration of a spreadsheet and workbench.
#@Jacek Sroka,Lukasz Krupa,Andrzej M. Kierzek,Jerzy Tyszkiewicz
#t2011
#cBioinformatics
#index3136310
#% 
#!
  
#*Dasty3, a WEB framework for DAS.
#@Jose M. Villaveces,Rafael C. Jimenez,Leyla J. Garcia,Gustavo A. Salazar,Bernat Gel,Nicola J. Mulder,Maria Jesus Martin,Alexander García Castro,Henning Hermjakob
#t2011
#cBioinformatics
#index3136301
#% 
#!
  
#*RxnFinder: biochemical reaction search engines using molecular structures, molecular fragments and reaction similarity.
#@Qian-Nan Hu,Zhe Deng,Huanan Hu,Dong-Sheng Cao,Yi-Zeng Liang
#t2011
#cBioinformatics
#index3136257
#% 
#!
  
#*A rank-based statistical test for measuring synergistic effects between two gene sets.
#@Yuichi Shiraishi,Mariko Okada-Hatakeyama,Satoru Miyano
#t2011
#cBioinformatics
#index3136229
#% 
#!
  
#*Robust synthetic gene network design via library-based search method.
#@Chih-Hung Wu,Hsiao-Ching Lee,Bor-Sen Chen
#t2011
#cBioinformatics
#index3136209
#% 
#!
  
#*Identification of novel transcripts in annotated genomes using RNA-Seq.
#@Adam Roberts,Harold Pimentel,Cole Trapnell,Lior Pachter
#t2011
#cBioinformatics
#index3136371
#% 
#!
  
#*GenSSI: a software toolbox for structural identifiability analysis of biological models.
#@Oana Chis,Julio R. Banga,Eva Balsa-Canto
#t2011
#cBioinformatics
#index3136214
#% 
#!
  
#*Integration of SNP genotyping confidence scores in IBD inference.
#@Barak Markus,Ohad S. Birk,Dan Geiger
#t2011
#cBioinformatics
#index3136298
#% 
#!
  
#*eResponseNet: a package prioritizing candidate disease genes through cellular pathways.
#@Jialiang Huang,Yi Liu,Wei Zhang,Hong Yu,Jing-Dong J. Han
#t2011
#cBioinformatics
#index3136347
#% 
#!
  
#*RING: networking interacting residues, evolutionary information and energetics in protein structures.
#@Alberto J. M. Martin,Michele Vidotto,Filippo Boscariol,Tomàs Di Domenico,Ian Walsh,Silvio C. E. Tosatto
#t2011
#cBioinformatics
#index3136338
#% 
#!
  
#*Finding stable local optimal RNA secondary structures.
#@Yuan Li,Shaojie Zhang
#t2011
#cBioinformatics
#index3136292
#% 
#!
  
#*Classification with correlated features: unreliability of feature ranking and solutions.
#@Laura Tolosi,Thomas Lengauer
#t2011
#cBioinformatics
#index3136353
#% 
#!
  
#*Detecting biological network organization and functional gene orthologs.
#@Jike Cui,Todd F. DeLuca,Jae-Yoon Jung,Dennis P. Wall
#t2011
#cBioinformatics
#index3136264
#% 
#!
  
#*IRiS: Construction of ARG networks at genomic scales.
#@Asif Javed,Marc Pybus,Marta Melé,Filippo Utro,Jaume Bertranpetit,Francesc Calafell,Laxmi Parida
#t2011
#cBioinformatics
#index3136180
#% 
#!
  
#*Coverage tradeoffs and power estimation in the design of whole-genome sequencing experiments for detecting association.
#@Yufeng Shen,Ruijie Song,Itsik Pe'er
#t2011
#cBioinformatics
#index3136348
#% 
#!
  
#*In-depth annotation of SNPs arising from resequencing projects using NGS-SNP.
#@Jason R. Grant,Adriano S. Arantes,Xiaoping Liao,Paul Stothard
#t2011
#cBioinformatics
#index3136281
#% 
#!
  
#*Sufficient statistics and expectation maximization algorithms in phylogenetic tree models.
#@Hisanori Kiryu
#t2011
#cBioinformatics
#index3136166
#% 
#!
  
#*RNA-Seq analysis in MeV.
#@Eleanor Howe,Raktim Sinha,Daniel Schlauch,John Quackenbush
#t2011
#cBioinformatics
#index3136384
#% 
#!
  
#*Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV.
#@Jarupon Fah Sathirapongsasuti,Hane Lee,Basil A. J. Horst,Georg Brunner,Alistair J. Cochran,Scott Binder,John Quackenbush,Stanley F. Nelson
#t2011
#cBioinformatics
#index3136395
#% 
#!
  
#*Pathogen detection using short-RNA deep sequencing subtraction and assembly.
#@Ofer Isakov,Shira Modai,Noam Shomron
#t2011
#cBioinformatics
#index3136367
#% 
#!
  
#*Computational prediction of eukaryotic phosphorylation sites.
#@Brett Trost,Anthony J. Kusalik
#t2011
#cBioinformatics
#index3136329
#% 
#!
  
#*A powerful and flexible approach to the analysis of RNA sequence count data.
#@Yi-Hui Zhou,Kai Xia,Fred A. Wright
#t2011
#cBioinformatics
#index3136168
#% 
#!
  
#*Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization.
#@Castrense Savojardo,Piero Fariselli,Monther Alhamdoosh,Pier Luigi Martelli,Andrea Pierleoni,Rita Casadio
#t2011
#cBioinformatics
#index3136236
#% 
#!
  
#*The GNAT library for local and remote gene mention normalization.
#@Jörg Hakenberg,Martin Gerner,Maximilian Haeussler,Illés Solt,Conrad Plake,Michael Schroeder,Graciela Gonzalez,Goran Nenadic,Casey M. Bergman
#t2011
#cBioinformatics
#index3136376
#% 
#!
  
#*A Lasso regression model for the construction of microRNA-target regulatory networks.
#@Yiming Lu,Yang Zhou,Wubin Qu,Minghua Deng,Chenggang Zhang
#t2011
#cBioinformatics
#index3136304
#% 
#!
  
#*Penalized regression elucidates aberration hotspots mediating subtype-specific transcriptional responses in breast cancer.
#@Yinyin Yuan,Oscar M. Rueda,Christina Curtis,Florian Markowetz
#t2011
#cBioinformatics
#index3136356
#% 
#!
  
#*LinkinPath: from sequence to interconnected pathway.
#@Supawadee Ingsriswang,Sunai Yokwai,Duangdao Wichadakul
#t2011
#cBioinformatics
#index3136192
#% 
#!
  
#*The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways.
#@Luca Beltrame,Enrica Calura,Razvan R. Popovici,Lisa Rizzetto,Damariz Rivero Guedez,Michele Donato,Chiara Romualdi,Sorin Draghici,Duccio Cavalieri
#t2011
#cBioinformatics
#index3136327
#% 
#!
  
#*Comparative analysis of algorithms for next-generation sequencing read alignment.
#@Matthew Ruffalo,Thomas LaFramboise,Mehmet Koyutürk
#t2011
#cBioinformatics
#index3136222
#% 
#!
  
#*Inferring disease and gene set associations with rank coherence in networks.
#@TaeHyun Hwang,Wei Zhang,Maoqiang Xie,Jinfeng Liu,Rui Kuang
#t2011
#cBioinformatics
#index3136256
#% 
#!
  
#*Computational reconstruction of primordial prototypes of elementary functional loops in modern proteins.
#@Alexander Goncearenco,Igor N. Berezovsky
#t2011
#cBioinformatics
#index3136370
#% 
#!
  
#*coMOTIF: a mixture framework for identifying transcription factor and a coregulator motif in ChIP-seq Data.
#@Mengyuan Xu,Clarice R. Weinberg,David M. Umbach,Leping Li
#t2011
#cBioinformatics
#index3136392
#% 
#!
  
#*A dynamic programming algorithm for identification of triplex-forming sequences.
#@Matej Lexa,Tomás Martínek,Ivana Burgetova,Daniel Kopecek,Marie Brázdová
#t2011
#cBioinformatics
#index3136334
#% 
#!
  
#*Simulating systems genetics data with SysGenSIM.
#@Andrea Pinna,Nicola Soranzo,Ina Hoeschele,Alberto de la Fuente
#t2011
#cBioinformatics
#index3136293
#% 
#!
  
#*GeneNetWeaver: benchmark generation and performance profiling of network inference methods.
#@Thomas Schaffter,Daniel Marbach,Dario Floreano
#t2011
#cBioinformatics
#index3136381
#% 
#!
  
#*inSilicoDb: an R/Bioconductor package for accessing human Affymetrix expert-curated datasets from GEO.
#@Jonatan Taminau,David Steenhoff,Alain Coletta,Stijn Meganck,Cosmin Lazar,Virginie de Schaetzen,Robin Duque,Colin Molter,Hugues Bersini,Ann Nowé,David Y. Weiss Solís
#t2011
#cBioinformatics
#index3136341
#% 
#!
  
#*SNPman: a program for genotype calling using run data from TaqMan allelic discrimination.
#@Martin Konopac,Petra Dusatkova,Ondrej Cinek
#t2011
#cBioinformatics
#index3136276
#% 
#!
  
#*ODORactor: a web server for deciphering olfactory coding.
#@Xinyi Liu,Xubo Su,Fei Wang,Zhimin Huang,Qi Wang,Zhen Li,Ruina Zhang,Lifang Wu,Yi Pan,Yingyi Chen,Hanyi Zhuang,Guoqiang Chen,Ting Shi,Jian Zhang
#t2011
#cBioinformatics
#index3136315
#% 
#!
  
#*Fast accessibility-based prediction of RNA-RNA interactions.
#@Hakim Tafer,Fabian Amman,Florian Eggenhofer,Peter F. Stadler,Ivo L. Hofacker
#t2011
#cBioinformatics
#index3136287
#% 
#!
  
#*Cdc45: the missing RecJ ortholog in eukaryotes?
#@Luis Sánchez-Pulido,Chris P. Ponting
#t2011
#cBioinformatics
#index3136242
#% 
#!
  
#*Discovering novel subsystems using comparative genomics.
#@Luciana Ferrer,Alexander Glennon Shearer,Peter D. Karp
#t2011
#cBioinformatics
#index3136155
#% 
#!
  
#*FDM: a graph-based statistical method to detect differential transcription using RNA-seq data.
#@Darshan Singh,Christian F. Orellana,Yin Hu,Corbin D. Jones,Yufeng Liu,Derek Y. Chiang,Jinze Liu,Jan F. Prins
#t2011
#cBioinformatics
#index3136265
#% 
#!
  
#*Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties.
#@Shu-An Chen,Yu-Yen Ou,Tzong-Yi Lee,M. Michael Gromiha
#t2011
#cBioinformatics
#index3136228
#% 
#!
  
#*SiTaR: a novel tool for transcription factor binding site prediction.
#@Eugen Fazius,Vladimir Shelest,Ekaterina Shelest
#t2011
#cBioinformatics
#index3136251
#% 
#!
  
#*MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification.
#@Ananth Kalyanaraman,William R. Cannon,Benjamin Latt,Douglas J. Baxter
#t2011
#cBioinformatics
#index3136200
#% 
#!
  
#*wapRNA: a web-based application for the processing of RNA sequences.
#@Wenming Zhao,Wanfei Liu,Dongmei Tian,Bixia Tang,Yanqing Wang,Caixia Yu,Rujiao Li,Yunchao Ling,Jiayan Wu,Shuhui Song,Songnian Hu
#t2011
#cBioinformatics
#index3136387
#% 
#!
  
#*CAMPAIGN: an open-source library of GPU-accelerated data clustering algorithms.
#@Kai J. Kohlhoff,Marc H. Sosnick,William T. Hsu,Vijay S. Pande,Russ B. Altman
#t2011
#cBioinformatics
#index3136237
#% 
#!
  
#*Menu-driven cloud computing and resource sharing for R and Bioconductor.
#@Hamid Bolouri,Rajiv Dulepet,Michael Angerman
#t2011
#cBioinformatics
#index3136300
#% 
#!
  
#*: mass-balanced randomization and analysis of metabolic networks.
#@Georg Basler,Zoran Nikoloski
#t2011
#cBioinformatics
#index3136262
#% 
#!
  
#*Identifying disease-associated SNP clusters via contiguous outlier detection.
#@Can Yang,Xiaowei Zhou,Xiang Wan,Qiang Yang,Hong Xue,Weichuan Yu
#t2011
#cBioinformatics
#index3136364
#% 
#!
  
#*Methyl-Analyzer - whole genome DNA methylation profiling.
#@Yurong Xin,Yongchao Ge,Fatemeh G. Haghighi
#t2011
#cBioinformatics
#index3136401
#% 
#!
  
#*Conserved and differential gene interactions in dynamical biological systems.
#@Zhengyu Ouyang,Mingzhou Song,Robert Güth,Thomas Ha,Matt Larouche,Daniel Goldowitz
#t2011
#cBioinformatics
#index3136390
#% 
#!
  
#*HAPGEN2: simulation of multiple disease SNPs.
#@Zhan Su,Jonathan Marchini,Peter Donnelly
#t2011
#cBioinformatics
#index3136195
#% 
#!
  
#*A wide repertoire of miRNA binding sites: prediction and functional implications.
#@Naama Elefant,Yael Altuvia,Hanah Margalit
#t2011
#cBioinformatics
#index3136340
#% 
#!
  
#*A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome.
#@Lorena Pantano,Xavier Estivill,Eulalia Martí
#t2011
#cBioinformatics
#index3136223
#% 
#!
  
#*SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics.
#@Filip Bielejec,Andrew Rambaut,Marc A. Suchard,Philippe Lemey
#t2011
#cBioinformatics
#index3136314
#% 
#!
  
#*ContEst: estimating cross-contamination of human samples in next-generation sequencing data.
#@Kristian Cibulskis,Aaron McKenna,Tim Fennell,Eric Banks,Mark A. DePristo,Gad Getz
#t2011
#cBioinformatics
#index3136277
#% 
#!
  
#*Bambus 2: scaffolding metagenomes.
#@Sergey Koren,Todd J. Treangen,Mihai Pop
#t2011
#cBioinformatics
#index3136398
#% 
#!
  
#*MixupMapper: correcting sample mix-ups in genome-wide datasets increases power to detect small genetic effects.
#@Harm-Jan Westra,Ritsert C. Jansen,Rudolf S. N. Fehrmann,Gerard J. te Meerman,David van Heel,Cisca Wijmenga,Lude Franke
#t2011
#cBioinformatics
#index3136286
#% 
#!
  
#*Sparse non-negative generalized PCA with applications to metabolomics.
#@Genevera I. Allen,Mirjana Maletic-Savatic
#t2011
#cBioinformatics
#index3136290
#% 
#!
  
#*Identification of novel phosphorylation modification sites in human proteins that originated after the human-chimpanzee divergence.
#@Dong Seon Kim,Yoonsoo Hahn
#t2011
#cBioinformatics
#index3136328
#% 
#!
  
#*Tissue-specific prediction of directly regulated genes.
#@Robert C. McLeay,Chris J. Leat,Timothy L. Bailey
#t2011
#cBioinformatics
#index3136326
#% 
#!
  
#*Fast filtering for RNA homology search.
#@Diana L. Kolbe,Sean R. Eddy
#t2011
#cBioinformatics
#index3136160
#% 
#!
  
#*A novel signal processing approach for the detection of copy number variations in the human genome.
#@Catherine Stamoulis,Rebecca A. Betensky
#t2011
#cBioinformatics
#index3136378
#% 
#!
  
#*Population length variability and nucleoid numbers in .
#@Chaitanya A. Athale,Hemangi Chaudhari
#t2011
#cBioinformatics
#index3136185
#% 
#!
  
#*Mathematical modeling of 16S ribosomal DNA amplification reveals optimal conditions for the interrogation of complex microbial communities with phylogenetic microarrays.
#@Oleg Paliy,Brent D. Foy
#t2011
#cBioinformatics
#index3136305
#% 
#!
  
#*The FAF-Drugs2 server: a multistep engine to prepare electronic chemical compound collections.
#@David Lagorce,Julien Maupetit,Jonathan B. Baell,Olivier Sperandio,Pierre Tufféry,Maria A. Miteva,Hervé Galons,Bruno O. Villoutreix
#t2011
#cBioinformatics
#index3136212
#% 
#!
  
#*NeuroPedia: neuropeptide database and spectral library.
#@Yoona Kim,Steven Bark,Vivian Hook,Nuno Bandeira
#t2011
#cBioinformatics
#index3136263
#% 
#!
  
#*Accurate Long Read Mapping using Enhanced Suffix Arrays.
#@Michaël Vyverman,Joachim M. De Schrijver,Wim Van Criekinge,Peter Dawyndt,Veerle Fack
#t2011
#cBioinformatics
#index3218485
#% 
#!
  
#*Disulfide Connectivity Prediction with Extreme Learning Machines.
#@Monther Alhamdoosh,Castrense Savojardo,Piero Fariselli,Rita Casadio
#t2011
#cBioinformatics
#index3218431
#% 
#!
  
#*Litter Effect in Mouse Phenotypic Studies.
#@Petr Simecek,Maria Dzur-Gejdosova,Irena Chvatalova,Jirí Forejt
#t2011
#cBioinformatics
#index3218366
#% 
#!
  
#*BIOINFORMATICS 2011 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Rome, Italy, 26-29 January, 2011
#@Marco Pellegrini,Ana L. N. Fred,Joaquim Filipe,Hugo Gamboa
#t2011
#cBioinformatics
#index3218621
#% 
#!
  
#*Metabolic Modeling of Converging Metabolic Pathways - Analysis of Non-steady State Stable Isotope-resolve Metabolism of UDP-GlcNAc and UDP-GalNAc.
#@Hunter N. B. Moseley,Richard M. Higashi,Teresa W.-M. Fan,Andrew N. Lane
#t2011
#cBioinformatics
#index3218385
#% 
#!
  
#*CUDA Performance in DNA Analysis - Analysis of Cuda Architecture Performance in DNA Analysis.
#@Daniel Cadete,António dos Anjos,Hamid Shahbazkia,Richard Christen
#t2011
#cBioinformatics
#index3218523
#% 
#!
  
#*Binding Free Energy Calculation via Molecular Dynamics Simulations for a miRNA: mRNA Interaction.
#@G. Paciello,Andrea Acquaviva,Elisa Ficarra,M. A. Deriu,A. Grosso,Enrico Macii
#t2011
#cBioinformatics
#index3218576
#% 
#!
  
#*GAST, a Genomic Alignment Search Tool.
#@Kalle Karhu,Juho Mäkinen,Jussi Rautio,Jorma Tarhio,Hugh Salamon
#t2011
#cBioinformatics
#index3218340
#% 
#!
  
#*Kinetic Models and Qualitative Abstraction for Relational Learning in Systems Biology.
#@Gabriel Synnaeve,Katsumi Inoue,Andrei Doncescu,Hidetomo Nabeshima,Yoshitaka Kameya,Masakazu Ishihata,Taisuke Sato
#t2011
#cBioinformatics
#index3218647
#% 
#!
  
#*Automatic Annotation of Bacterial Community Sequences and Application to Infections Diagnostic.
#@Victor V. Solovyev,Asaf A. Salamov,Igor A. Seledtsov,Denis Vorobyev,Alexander G. Bachinsky
#t2011
#cBioinformatics
#index3218396
#% 
#!
  
#*A Computational Strategy to Investigate Relevant Similarities between Virus and Human Proteins - Local High Similarities between Herpes and Human Proteins.
#@Anna Marabotti,Corrado Cirielli,Daniela Agnese D'Arcangelo,Claudia Giampietri,Francesco Facchiano,Antonio Facchiano,Angelo M. Facchiano
#t2011
#cBioinformatics
#index3218330
#% 
#!
  
#*Improved Breast Cancer Prognosis based on a Hybrid Marker Selection Approach.
#@Lyamine Hedjazi,Marie-Véronique Le Lann,Tatiana Kempowsky-Hamon,F. Dalenc,G. Favre
#t2011
#cBioinformatics
#index3218446
#% 
#!
  
#*The Mamdani Controller in Prediction of the Survival Length in Elderly Gastric Patients.
#@Hang Zettervall,Elisabeth Rakus-Andersson,Henrik Forssell
#t2011
#cBioinformatics
#index3218672
#% 
#!
  
#*Unified Modeling of Several Perturbation Experiments in Systems Biology - A Case Study on the Glucose Uptake of Lactococcus Lactis.
#@András Hartmann,Susana Vinga,João M. Lemos
#t2011
#cBioinformatics
#index3218558
#% 
#!
  
#*A Computational Modelling Approach to Explore the Anti-microbial Pro-drug Delivery System.
#@James T. Murphy,Ray Walshe,Marc Devocelle
#t2011
#cBioinformatics
#index3218437
#% 
#!
  
#*Interactive Visualization Tool for Tumor Growth Simulations.
#@Rafal Wcislo
#t2011
#cBioinformatics
#index3218522
#% 
#!
  
#*Bio-informatics in the Light of the Maximum Ordinality Principle - The Case of Duchenne Muscular Dystrophy.
#@Corrado Giannantoni
#t2011
#cBioinformatics
#index3218395
#% 
#!
  
#*A Theoretical Analysis of Scalability of the Parallel Genome Assembly Algorithms.
#@Munib Ahmed,Ishfaq Ahmad,Samee Khan
#t2011
#cBioinformatics
#index3218389
#% 
#!
  
#*Robustness of Exon CGH Array Designs.
#@Tomasz Gambin,Pawel Stankiewicz,Maciej Sykulski,Anna Gambin
#t2011
#cBioinformatics
#index3218592
#% 
#!
  
#*Modeling Delays in State Transition of a Bistable Genetic Switch under the Influence of Extrinsic Noise.
#@Jaroslav Albert,Marianne Rooman
#t2011
#cBioinformatics
#index3218360
#% 
#!
  
#*Reconfigurable Computing IP Cores for Multiple Sequence Alignment.
#@Matina Lakka,A. Desarti,Grigorios Chrysos,Euripides Sotiriades,Ioannis Papaefstathiou,Apostolos Dollas
#t2011
#cBioinformatics
#index3218513
#% 
#!
  
#*BioDBLink: Multi-level Data Matching for Automatic Generation of Cross Links among Biochemical Pathway Databases.
#@Jyh-Jong Tsay,Bo-Liang Wu,Hou-Ji Dai
#t2011
#cBioinformatics
#index3218369
#% 
#!
  
#*Inferring Mobile Elements in S. Cerevisiae Strains.
#@Giulia Menconi,Giovanni Battaglia,Roberto Grossi,Nadia Pisanti,Roberto Marangoni
#t2011
#cBioinformatics
#index3218511
#% 
#!
  
#*Minimum Mutation Algorithm for Gapless Metabolic Network Evolution.
#@Esa Pitkänen,Juho Rousu,Mikko Arvas
#t2011
#cBioinformatics
#index3218402
#% 
#!
  
#*Predicted Relative Metabolomic Turnover - Predicting Changes in the Environmental Metabolome from the Metagenome.
#@Peter E. Larsen,Frank Collart,Folker Meyer,Jack A. Gilbert
#t2011
#cBioinformatics
#index3218496
#% 
#!
  
#*SalaboMiner - A Biomedical Literature Mining Tool for Inferring the Genetics of Complex Diseases.
#@Leonor Rib,Ricard Gavaldà,José Manuel Soria,Alfonso Buil
#t2011
#cBioinformatics
#index3218665
#% 
#!
  
#*Morphological Analysis of 3D Proteins Structure.
#@Virginio Cantoni,Riccardo Gatti,Luca Lombardi
#t2011
#cBioinformatics
#index3218516
#% 
#!
  
#*Colour Correction for Assessing Plant Pathology using Low Quality Cameras.
#@Sion Hannuna,Timo Kunkel,Nantheera Anantrasirichai,Nishan Canagarajah
#t2011
#cBioinformatics
#index3218403
#% 
#!
  
#*Unrevealing Biological Process with Linear Algebra - Extracting Patterns from Noisy Data.
#@Bráulio Roberto Gonçalves Marinho Couto,Marcelo Matos Santoro,Marcos Augusto dos Santos
#t2011
#cBioinformatics
#index3218345
#% 
#!
  
#*Experimental Results on Multiple Pattern Matching Algorithms for Biological Sequences.
#@Charalampos S. Kouzinopoulos,Panagiotis D. Michailidis,Konstantinos G. Margaritis
#t2011
#cBioinformatics
#index3218460
#% 
#!
  
#*Annotating UniProt Metagenomic and Environmental Sequences in UniMES.
#@Samuel Patient,Maria Jesus Martin
#t2011
#cBioinformatics
#index3218414
#% 
#!
  
#*Modeling Cell Proliferation Activity of Human Interleukin-3 upon Single Residue Replacements.
#@Majid Masso,Iosif I. Vaisman
#t2011
#cBioinformatics
#index3218352
#% 
#!
  
#*Proposal for Open Discussion - Informatics Challenges for Next Generation Sequencing Metagenomics Experiments.
#@Folker Meyer,Nikos Kyrpides
#t2011
#cBioinformatics
#index3218499
#% 
#!
  
#*A High Accuracy CT based FEM Model of the Lumbar Spine to Determine its Biomechanical Response.
#@A. Tsouknidas,N. Michailidis,S. Savvakis,K. Anagnostidis,K.-D. Bouzakis,G. Kapetanos
#t2011
#cBioinformatics
#index3218440
#% 
#!
  
#*Applying Conceptual Modeling to Alignment Tools One Step towards the Automation of DNA Sequence Analysis.
#@Maria José Villanueva,Francisco Valverde,Oscar Pastor
#t2011
#cBioinformatics
#index3218453
#% 
#!
  
#*A Mathematical Model for the Enhanced Cytoplasmic Transport - How to Get (Faster) to the Nucleus.
#@Luna Dimitrio,Roberto Natalini,Luciano Milanesi
#t2011
#cBioinformatics
#index3218601
#% 
#!
  
#*On Vaccination Controls for the SEIR Epidemic Model with Susceptible plus Immune Populations Tracking the Whole Population.
#@Manuel de la Sen,Santiago Alonso-Quesada,Asier Ibeas
#t2011
#cBioinformatics
#index3218509
#% 
#!
  
#*Mutational Data Loading Routines for Human Genome Databases - The BRCA1 Case.
#@Matthijs van der Kroon,Ignacio Lereu Ramirez,Ana M. Levin,Oscar Pastor,Sjaak Brinkkemper
#t2011
#cBioinformatics
#index3218355
#% 
#!
  
#*A Method to Improve the Accuracy of Protein Torsion Angles.
#@José C. Calvo,Julio Ortega,Mancia Anguita,Javid Taheri,Albert Y. Zomaya
#t2011
#cBioinformatics
#index3218353
#% 
#!
  
#*Chaos Level Investigation of Centre-of-pressure Single-step Displacement in Static and Dynamic Visual Conditions.
#@Lili Pei,Shujia Qin,Wei Ding,Lei Miao,Hongyi Li
#t2011
#cBioinformatics
#index3218551
#% 
#!
  
#*PadeNA: A Parallel De Novo Assembler.
#@Gaurav Thareja,Vivek Kumar,Mike Zyskowski,Simon Mercer,Bob Davidson
#t2011
#cBioinformatics
#index3218491
#% 
#!
  
#*Singular Value Decomposition (SVD) and BLAST - Quite Different Methods Achieving Similar Results.
#@Bráulio Roberto Gonçalves Marinho Couto,Marcelo Matos Santoro,Marcos Augusto dos Santos
#t2011
#cBioinformatics
#index3218335
#% 
#!
  
#*Prediction of Regulatory sRNAs in Prokaryotes using Machine Learning Tools.
#@Na'el Abu-halaweh,Amit Sabnis,Robert W. Harrison
#t2011
#cBioinformatics
#index3218417
#% 
#!
  
#*Texture Analysis of Milk Protein Gels using Digital Image Analysis.
#@Juan Pablo Costa,Horacio Castellini,Patricia Risso,Bibiana Riquelme
#t2011
#cBioinformatics
#index3218363
#% 
#!
  
#*Modeling Internal Radiation Therapy.
#@Egon L. van den Broek,Theo E. Schouten
#t2011
#cBioinformatics
#index3218588
#% 
#!
  
#*Microarray System - A System for Managing Data Produced by DNA-microarray Experiments.
#@Alberto Calvi,Pietro Lovato,Simone Marchesini,Barbara Oliboni,Massimo Delledonne,Alberto Ferrarini
#t2011
#cBioinformatics
#index3218520
#% 
#!
  
#*Geometrical Constraints for Ligand Positioning.
#@Virginio Cantoni,Alessandro Gaggia,Riccardo Gatti,Luca Lombardi
#t2011
#cBioinformatics
#index3218420
#% 
#!
  
#*Image Analysis Combined Fluorescence Microscopy - Examples of ImageJ Software Application in Yeast Studies.
#@Evgeny O. Puchkov
#t2011
#cBioinformatics
#index3218646
#% 
#!
  
#*Towards Fast 3D Nanoparticle Localization for Studying Molecular Dynamics in Living Cells.
#@Stefan Sokoll,Klaus D. Tönnies,Martin Heine
#t2011
#cBioinformatics
#index3218351
#% 
#!
  
#*Subset Seed Extension to Protein BLAST.
#@Anna Gambin,Slawomir Lasota,Michal Startek,Maciej Sykulski,Laurent Noé,Gregory Kucherov
#t2011
#cBioinformatics
#index3218507
#% 
#!
  
#*A New Latent Semantic Analysis based Methodology for Knowledge Extraction from Biomedical Literature and Biological Pathways Databases.
#@Francesco Abate,Andrea Acquaviva,Elisa Ficarra,Enrico Macii
#t2011
#cBioinformatics
#index3218473
#% 
#!
  
#*Accurate Latency Characterization for Very Large Asynchronous Spiking Neural Networks.
#@Mario Salerno,Gianluca Susi,Alessandro Cristini
#t2011
#cBioinformatics
#index3218566
#% 
#!
  
#*Bistability and the Complex Depletion Paradox in the Double Phosphorylation-dephosphorylation Cycle.
#@Guido Dell'Acqua,Alberto Maria Bersani
#t2011
#cBioinformatics
#index3218510
#% 
#!
  
#*Optimization of a Solid State Fermentation based on Radial Basis Function Neural Network and Particle Swarm Optimization Algorithm.
#@Badia Dandach-Bouaoudat,Farouk Yalaoui,Lionel Amodeo,Françoise Entzmann
#t2011
#cBioinformatics
#index3218384
#% 
#!
  
#*Automated Counting of Yeast Colonies using the Fast Radial Transform Algorithm.
#@Jan Schier,Bohumil Kovár
#t2011
#cBioinformatics
#index3218333
#% 
#!
  
#*Infrastructure for Metagenome Data Management and Analysis.
#@Tatiana A. Tatusova
#t2011
#cBioinformatics
#index3218467
#% 
#!
  
#*Computing graphlet signatures of network nodes and motifs in Cytoscape with GraphletCounter.
#@Christopher Whelan,Kemal Sönmez
#t2012
#cBioinformatics
#index3250716
#% 
#!
  
#*TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.
#@Yan W. Asmann,Sumit Middha,Asif Hossain,Saurabh Baheti,Ying Li,High-Seng Chai,Zhifu Sun,Patrick H. Duffy,Ahmed A. Hadad,Asha Nair,Xiaoyu Liu,Yuji Zhang,Eric W. Klee,Krishna R. Kalari,Jean-Pierre Kocher
#t2012
#cBioinformatics
#index3250787
#% 
#!
  
#*Mapping personal functional data to personal genomes.
#@Marcelo Rivas-Astroza,Dan Xie,Xiaoyi Cao,Sheng Zhong
#t2011
#cBioinformatics
#index3250832
#% 
#!
  
#*An assessment of substitution scores for protein profile-profile comparison.
#@Xugang Ye,Guoli Wang,Stephen F. Altschul
#t2011
#cBioinformatics
#index3250755
#% 
#!
  
#*Determining the evolutionary history of gene families.
#@Ryan M. Ames,Daniel Money,Vikramsinh P. Ghatge,Simon Whelan,Simon C. Lovell
#t2012
#cBioinformatics
#index3250756
#% 
#!
  
#*Prediction and analysis of nucleotide-binding residues using sequence and sequence-derived structural descriptors.
#@Ke Chen,Marcin J. Mizianty,Lukasz A. Kurgan
#t2012
#cBioinformatics
#index3250721
#% 
#!
  
#*Sequential Monte Carlo multiple testing.
#@Geir Kjetil Sandve,Egil Ferkingstad,Ståle Nygård
#t2011
#cBioinformatics
#index3250714
#% 
#!
  
#*Multifunctional proteins revealed by overlapping clustering in protein interaction network.
#@Emmanuelle Becker,Benoît Robisson,Charles E. Chapple,Alain Guénoche,Marie-Christine Brun
#t2012
#cBioinformatics
#index3250727
#% 
#!
  
#*Comments on 'An empirical comparison of several recent epistatic interaction detection methods'.
#@Xiang Wan,Can Yang,Weichuan Yu
#t2012
#cBioinformatics
#index3250837
#% 
#!
  
#*Detecting differential binding of transcription factors with ChIP-seq.
#@Kun Liang,Sündüz Keles
#t2012
#cBioinformatics
#index3250733
#% 
#!
  
#*Visualization and quality assessment of genome assemblies.
#@Oksana Riba-Grognuz,Laurent Keller,Laurent Falquet,Ioannis Xenarios,Yannick Wurm
#t2011
#cBioinformatics
#index3250818
#% 
#!
  
#*A novel specific edge effect correction method for RNA interference screenings.
#@Jean-Philippe Carralot,Arnaud Ogier,Annette Boese,Auguste Genovesio,Priscille Brodin,Peter Sommer,Thierry Dorval
#t2012
#cBioinformatics
#index3250786
#% 
#!
  
#*Wavelet-based image fusion in multi-view three-dimensional microscopy.
#@Jose L. Rubio-Guivernau,Vasily Gurchenkov,Miguel A. Luengo-Oroz,Louise Duloquin,Paul Bourgine,Andrés Santos,Nadine Peyriéras,María J. Ledesma-Carbayo
#t2012
#cBioinformatics
#index3250711
#% 
#!
  
#*Time-course network analysis reveals TNF-α can promote G/S transition of cell cycle in vascular endothelial cells.
#@Yang Chen,Jin Gu,Dan Li,Shao Li
#t2012
#cBioinformatics
#index3250742
#% 
#!
  
#*M: an improved SNP calling algorithm for Illumina BeadArray data.
#@Gengxin Li,Joel Gelernter,Henry R. Kranzler,Hongyu Zhao
#t2012
#cBioinformatics
#index3250730
#% 
#!
  
#*A simple statistical test to infer the causality of target/phenotype correlation from small molecule phenotypic screens.
#@Xin Wei,Ann F. Hoffman,Shannon M. Hamilton,Qing Xiang,Yang He,W. Venus So,Sung-Sau So,David Mark
#t2012
#cBioinformatics
#index3250732
#% 
#!
  
#*KABOOM! A new suffix array based algorithm for clustering expression data.
#@Scott Hazelhurst,Zsuzsanna Lipták
#t2011
#cBioinformatics
#index3250824
#% 
#!
  
#*Gene set analysis in the cloud.
#@Lu Zhang,Shengchang Gu,Yuan Liu,Bingqiang Wang,Francisco Azuaje
#t2012
#cBioinformatics
#index3250739
#% 
#!
  
#*PGAP: pan-genomes analysis pipeline.
#@Yongbing Zhao,Jiayan Wu,Junhui Yang,Shixiang Sun,Jing-Fa Xiao,Jun Yu
#t2012
#cBioinformatics
#index3250737
#% 
#!
  
#*BioPAX support in CellDesigner.
#@Huaiyu Mi,Anushya Muruganujan,Emek Demir,Yukiko Matsuoka,Akira Funahashi,Hiroaki Kitano,Paul D. Thomas
#t2011
#cBioinformatics
#index3250831
#% 
#!
  
#*Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers.
#@Edward Y. Chen,Huilei Xu,Simon Gordonov,Maribel P. Lim,Matthew H. Perkins,Avi Ma'ayan
#t2012
#cBioinformatics
#index3250783
#% 
#!
  
#*NARWHAL, a primary analysis pipeline for NGS data.
#@R. W. W. Brouwer,M. C. G. N. van den Hout,F. G. Grosveld,W. F. J. van IJcken
#t2012
#cBioinformatics
#index3250790
#% 
#!
  
#*Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences.
#@Manal Kalkatawi,Farania Rangkuti,Michael Schramm,Boris R. Jankovic,Allan Kamau,Rajesh Chowdhary,John A. C. Archer,Vladimir B. Bajic
#t2012
#cBioinformatics
#index3250808
#% 
#!
  
#*Graph accordance of next-generation sequence assemblies.
#@Guohui Yao,Liang Ye,Hongyu Gao,Patrick Minx,Wesley C. Warren,George M. Weinstock
#t2012
#cBioinformatics
#index3250797
#% 
#!
  
#*FTSite: high accuracy detection of ligand binding sites on unbound protein structures.
#@Chi-Ho Ngan,David R. Hall,Brandon Zerbe,Laurie E. Grove,Dima Kozakov,Sandor Vajda
#t2012
#cBioinformatics
#index3250706
#% 
#!
  
#*FlyExpress: visual mining of spatiotemporal patterns for genes and publications in embryogenesis.
#@Sudhir Kumar,Charlotte Konikoff,Bernard Van Emden,Christopher Busick,Kailah T. Davis,Shuiwang Ji,Lin-Wei Wu,Hector Ramos,Thomas Brody,Sethuraman Panchanathan,Jieping Ye,Timothy L. Karr,Kristyn Gerold,Michael McCutchan,Stuart J. Newfeld
#t2011
#cBioinformatics
#index3250815
#% 
#!
  
#*: a computational platform for developing high-throughput analytics in genomics.
#@Aristotelis Tsirigos,Niina Haiminen,Erhan Bilal,Filippo Utro
#t2012
#cBioinformatics
#index3250729
#% 
#!
  
#*Optimized application of penalized regression methods to diverse genomic data.
#@Levi Waldron,Melania Pintilie,Ming-Sound Tsao,Frances A. Shepherd,Curtis Huttenhower,Igor Jurisica
#t2011
#cBioinformatics
#index3250836
#% 
#!
  
#*The rise and fall of supervised machine learning techniques.
#@Lars Juhl Jensen,Alex Bateman
#t2011
#cBioinformatics
#index3250834
#% 
#!
  
#*A novel and versatile computational tool to model translation.
#@Dominique F. Chu,Nicolae Radu Zabet,Tobias von der Haar
#t2012
#cBioinformatics
#index3250749
#% 
#!
  
#*Epigenetic priors for identifying active transcription factor binding sites.
#@Gabriel Cuellar-Partida,Fabian A. Buske,Robert C. McLeay,Tom Whitington,William Stafford Noble,Timothy L. Bailey
#t2012
#cBioinformatics
#index3250776
#% 
#!
  
#*Sensitive and fast mapping of di-base encoded reads.
#@Farhad Hormozdiari,Faraz Hach,Süleyman Cenk Sahinalp,Evan E. Eichler,Can Alkan
#t2012
#cBioinformatics
#index3250740
#% 
#!
  
#*MR-Tandem: parallel X!Tandem using Hadoop MapReduce on Amazon Web Services.
#@Brian Pratt,J. Jeffry Howbert,Natalie I. Tasman,Erik J. Nilsson
#t2012
#cBioinformatics
#index3250712
#% 
#!
  
#*SitePainter: a tool for exploring biogeographical patterns.
#@Antonio Gonzalez,Jesse Stombaugh,Christian L. Lauber,Noah Fierer,Rob Knight
#t2012
#cBioinformatics
#index3250758
#% 
#!
  
#*Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets.
#@Marie Brown,David C. Wedge,Royston Goodacre,Douglas B. Kell,Philip N. Baker,Louise C. Kenny,Mamas A. Mamas,Ludwig Neyses,Warwick B. Dunn
#t2012
#cBioinformatics
#index3250807
#% 
#!
  
#*PathVar: analysis of gene and protein expression variance in cellular pathways using microarray data.
#@Enrico Glaab,Reinhard Schneider
#t2012
#cBioinformatics
#index3250708
#% 
#!
  
#*Automatic generation of protein structure cartoons with Pro-origami.
#@Alex Stivala,Michael Wybrow,Anthony Wirth,James C. Whisstock,Peter J. Stuckey
#t2011
#cBioinformatics
#index3250765
#% 
#!
  
#*STRIKE: evaluation of protein MSAs using a single 3D structure.
#@Carsten Kemena,Jean-François Taly,Jens Kleinjung,Cédric Notredame
#t2011
#cBioinformatics
#index3250731
#% 
#!
  
#*ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression.
#@Jesse M. Engreitz,Rong Chen,Alexander A. Morgan,Joel Dudley,Rohan Mallelwar,Atul J. Butte
#t2011
#cBioinformatics
#index3250752
#% 
#!
  
#*Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data.
#@Jiarui Ding,Ali Bashashati,Andrew Roth,Arusha Oloumi,Kane Tse,Thomas Zeng,Gholamreza Haffari,Martin Hirst,Marco A. Marra,Anne Condon,Sam Aparicio,Sohrab P. Shah
#t2012
#cBioinformatics
#index3250821
#% 
#!
  
#*Fast computation of minimum hybridization networks.
#@Benjamin Albrecht,Celine Scornavacca,Alberto Cenci,Daniel H. Huson
#t2012
#cBioinformatics
#index3250766
#% 
#!
  
#*The Virtual Fly Brain browser and query interface.
#@Nestor Milyaev,David Osumi-Sutherland,Simon Reeve,Nicholas Burton,Richard A. Baldock,J. Douglas Armstrong
#t2012
#cBioinformatics
#index3250798
#% 
#!
  
#*Cascade detection for the extraction of localized sequence features; specificity results for HIV-1 protease and structure-function results for the Schellman loop.
#@Nicholas E. Newell
#t2011
#cBioinformatics
#index3250707
#% 
#!
  
#*Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.
#@Alla Karnovsky,Terry E. Weymouth,Tim Hull,V. Glenn Tarcea,Giovanni Scardoni,Carlo Laudanna,Maureen A. Sartor,Kathleen A. Stringer,H. V. Jagadish,Charles F. Burant,Brian D. Athey,Gilbert S. Omenn
#t2012
#cBioinformatics
#index3250816
#% 
#!
  
#*Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information.
#@Xiujun Zhang,Xing-Ming Zhao,Kun He,Le Lu,Yongwei Cao,Jingdong Liu,Jin-Kao Hao,Zhi-Ping Liu,Luonan Chen
#t2012
#cBioinformatics
#index3250738
#% 
#!
  
#*BadiRate: estimating family turnover rates by likelihood-based methods.
#@P. Librado,F. G. Vieira,J. Rozas
#t2012
#cBioinformatics
#index3250789
#% 
#!
  
#*Large-scale motif discovery using DNA Gray code and equiprobable oligomers.
#@Natsuhiro Ichinose,Tetsushi Yada,Osamu Gotoh
#t2012
#cBioinformatics
#index3250718
#% 
#!
  
#*Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data.
#@Arief Gusnanto,Henry M. Wood,Yudi Pawitan,Pamela Rabbitts,Stefano Berri
#t2012
#cBioinformatics
#index3250760
#% 
#!
  
#*The design of optimal therapeutic small interfering RNA molecules targeting diverse strains of influenza A virus.
#@Mahmoud ElHefnawi,Nafisa Hassan,Mona Kamar,Rania Siam,Anna Lisa Remoli,Iman El-Azab,Osama AlAidy,Giulia Marsili,Marco Sgarbanti
#t2011
#cBioinformatics
#index3250828
#% 
#!
  
#*Using Sybil for interactive comparative genomics of microbes on the web.
#@David R. Riley,Samuel V. Angiuoli,Jonathan Crabtree,Julie C. Dunning Hotopp,Herve Tettelin
#t2012
#cBioinformatics
#index3250793
#% 
#!
  
#*SNPxGE: a database for human SNP-coexpression associations.
#@Yupeng Wang,Sandeep J. Joseph,Xinyu Liu,Michael Kelley,Romdhane Rekaya
#t2012
#cBioinformatics
#index3250704
#% 
#!
  
#*Minimal cut sets in a metabolic network are elementary modes in a dual network.
#@Kathrin Ballerstein,Axel von Kamp,Steffen Klamt,Utz-Uwe Haus
#t2012
#cBioinformatics
#index3250784
#% 
#!
  
#*Identification and removal of ribosomal RNA sequences from metatranscriptomes.
#@Robert Schmieder,Yan Wei Lim,Robert Edwards
#t2012
#cBioinformatics
#index3250813
#% 
#!
  
#*BDTcomparator: a program for comparing binary classifiers.
#@Kamil Fijorek,Damian Fijorek,Barbara Wisniowska,Sebastian Polak
#t2011
#cBioinformatics
#index3250751
#% 
#!
  
#*PubChem promiscuity: a web resource for gathering compound promiscuity data from PubChem.
#@Stephanie A. Canny,Yasel Cruz,Mark R. Southern,Patrick R. Griffin
#t2012
#cBioinformatics
#index3250833
#% 
#!
  
#*Gaussian process modelling for mRNA regulation in spatio-temporal Bicoid profile.
#@Wei Liu,Mahesan Niranjan
#t2012
#cBioinformatics
#index3250767
#% 
#!
  
#*CellAnimation: an open source MATLAB framework for microscopy assays.
#@Walter Georgescu,John P. Wikswo,Vito Quaranta
#t2012
#cBioinformatics
#index3250775
#% 
#!
  
#*AURA: Atlas of UTR Regulatory Activity.
#@E. Dassi,A. Malossini,A. Re,T. Mazza,T. Tebaldi,L. Caputi,A. Quattrone
#t2012
#cBioinformatics
#index3250757
#% 
#!
  
#*Modelling time course gene expression data with finite mixtures of linear additive models.
#@Bettina Grün,Theresa Scharl,Friedrich Leisch
#t2012
#cBioinformatics
#index3250780
#% 
#!
  
#*Integrated annotation and analysis of genetic variants from next-generation sequencing studies with .
#@F. Anthony San Lucas,Gao Wang,Paul Scheet,Bo Peng
#t2012
#cBioinformatics
#index3250806
#% 
#!
  
#*Inhibition of HIV-1 protease: the rigidity perspective.
#@J. W. Heal,J. E. Jimenez-Roldan,Stephen A. Wells,R. B. Freedman,Rudolf A. Römer
#t2012
#cBioinformatics
#index3250746
#% 
#!
  
#*Addendum: topology and prediction of RNA pseudoknots.
#@Christian M. Reidys,Fenix W. D. Huang,Jørgen E. Andersen,Robert C. Penner,Peter F. Stadler,Markus E. Nebel
#t2012
#cBioinformatics
#index3250709
#% 
#!
  
#*BioTextQuest: a web-based biomedical text mining suite for concept discovery.
#@Nikolas Papanikolaou,Evangelos Pafilis,Stavros Nikolaou,Christos A. Ouzounis,Ioannis Iliopoulos,Vassilis J. Promponas
#t2011
#cBioinformatics
#index3250715
#% 
#!
  
#*SomaticSniper: identification of somatic point mutations in whole genome sequencing data.
#@David E. Larson,Christopher C. Harris,Ken Chen,Daniel C. Koboldt,Travis E. Abbott,David J. Dooling,Timothy J. Ley,Elaine R. Mardis,Richard K. Wilson,Li Ding
#t2012
#cBioinformatics
#index3250792
#% 
#!
  
#*An automatic method for CASP9 free modeling structure prediction assessment.
#@Qian Cong,Lisa N. Kinch,Jimin Pei,Shuoyong Shi,Vyacheslav N. Grishin,Wenlin Li,Nick V. Grishin
#t2011
#cBioinformatics
#index3250799
#% 
#!
  
#*A system-level approach for deciphering the transcriptional response to prion infection.
#@Mattia Zampieri,Giuseppe Legname,Daniel Segrè,Claudio Altafini
#t2011
#cBioinformatics
#index3250774
#% 
#!
  
#*Detecting genome-wide epistases based on the clustering of relatively frequent items.
#@Minzhu Xie,Jing Li,Tao Jiang
#t2012
#cBioinformatics
#index3250822
#% 
#!
  
#*Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank.
#@Robbie P. Joosten,Krista Joosten,Serge X. Cohen,Gert Vriend,Anastassis Perrakis
#t2011
#cBioinformatics
#index3250710
#% 
#!
  
#*Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site.
#@Gilad Wainreb,Lior Wolf,Haim Ashkenazy,Yves Dehouck,Nir Ben-Tal
#t2011
#cBioinformatics
#index3250753
#% 
#!
  
#*Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq.
#@Ming Hu,Yu Zhu,Jeremy M. G. Taylor,Jun S. Liu,Zhaohui S. Qin
#t2012
#cBioinformatics
#index3250781
#% 
#!
  
#*rNA: a fast and accurate short reads numerical aligner.
#@Francesco Vezzi,Cristian Del Fabbro,Alexandru I. Tomescu,Alberto Policriti
#t2012
#cBioinformatics
#index3250820
#% 
#!
  
#*Gene Ontology-driven inference of protein-protein interactions using inducers.
#@Stefan Maetschke,Martin Simonsen,Melissa J. Davis,Mark A. Ragan
#t2012
#cBioinformatics
#index3250759
#% 
#!
  
#*Enrich: software for analysis of protein function by enrichment and depletion of variants.
#@Douglas M. Fowler,Carlos L. Araya,Wayne Gerard,Stanley Fields
#t2011
#cBioinformatics
#index3250814
#% 
#!
  
#*MetaRank: a rank conversion scheme for comparative analysis of microbial community compositions.
#@Tse-Yi Wang,Chien-Hao Su,Huai-Kuang Tsai
#t2011
#cBioinformatics
#index3250794
#% 
#!
  
#*CAMBerVis: visualization software to support comparative analysis of multiple bacterial strains.
#@Michal Wozniak,Limsoon Wong,Jerzy Tiuryn
#t2011
#cBioinformatics
#index3250723
#% 
#!
  
#*Which species is it? Species-driven gene name disambiguation using random walks over a mixture of adjacency matrices.
#@Nathan Harmston,Wendy Filsell,Michael P. H. Stumpf
#t2012
#cBioinformatics
#index3250717
#% 
#!
  
#*Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data.
#@Sonja Althammer,Juan González-Vallinas,Cecilia Ballaré,Miguel Beato,Eduardo Eyras
#t2011
#cBioinformatics
#index3250724
#% 
#!
  
#*DMAN: a Java tool for analysis of multi-well differential scanning fluorimetry experiments.
#@Conan K. Wang,Saroja K. Weeratunga,Chris M. Pacheco,Andreas Hofmann
#t2012
#cBioinformatics
#index3250745
#% 
#!
  
#*HydroPaCe: understanding and predicting cross-inhibition in serine proteases through hydrophobic patch centroids.
#@V. M. Gonçalves-Almeida,D. E. V. Pires,Raquel Cardoso de Melo Minardi,C. H. da Silveira,Wagner Meira Jr.,Marcelo M. Santoro
#t2012
#cBioinformatics
#index3250779
#% 
#!
  
#*FSR: feature set reduction for scalable and accurate multi-class cancer subtype classification based on copy number.
#@Gerard Wong,Christopher Leckie,Adam Kowalczyk
#t2012
#cBioinformatics
#index3250819
#% 
#!
  
#*Pico-inplace-inversions between human and chimpanzee.
#@Minmei Hou,Ping Yao,Angela Antonou,Mitrick A. Johns
#t2011
#cBioinformatics
#index3250805
#% 
#!
  
#*Novel search method for the discovery of functional relationships.
#@Fidel Ramírez,Glenn Lawyer,Mario Albrecht
#t2012
#cBioinformatics
#index3250800
#% 
#!
  
#*MTBindingSim: simulate protein binding to microtubules.
#@Julia T. Philip,Charles H. Pence,Holly V. Goodson
#t2012
#cBioinformatics
#index3250773
#% 
#!
  
#*PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs.
#@H. E. L. Lischer,Laurent Excoffier
#t2012
#cBioinformatics
#index3250754
#% 
#!
  
#*FASTSP: linear time calculation of alignment accuracy.
#@Siavash Mirarab,Tandy Warnow
#t2011
#cBioinformatics
#index3250804
#% 
#!
  
#*MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation.
#@Laurent Gatto,Kathryn S. Lilley
#t2012
#cBioinformatics
#index3250762
#% 
#!
  
#*VizPrimer: a web server for visualized PCR primer design based on known gene structure.
#@Yang Zhou,Wubin Qu,Yiming Lu,Yanchun Zhang,Xiaolei Wang,Dongsheng Zhao,Yi Yang,Chenggang Zhang
#t2011
#cBioinformatics
#index3250811
#% 
#!
  
#*Protein subcellular localization of fluorescence imagery using spatial and transform domain features.
#@Muhammad Tahir,Asifullah Khan,Abdul Majid
#t2012
#cBioinformatics
#index3250802
#% 
#!
  
#*RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data.
#@Yongan Zhao,Haixu Tang,Yuzhen Ye
#t2012
#cBioinformatics
#index3250809
#% 
#!
  
#*NoRSE: noise reduction and state evaluator for high-frequency single event traces.
#@Nigel F. Reuel,Peter Bojo,Jingqing Zhang,Ardemis A. Boghossian,Jin-Ho Ahn,Jong-Ho Kim,Michael S. Strano
#t2012
#cBioinformatics
#index3250782
#% 
#!
  
#*The Infobiotics Workbench: an integrated modelling platform for Systems and Synthetic Biology.
#@Jonathan Blakes,Jamie Twycross,Francisco José Romero-Campero,Natalio Krasnogor
#t2011
#cBioinformatics
#index3250768
#% 
#!
  
#*SVseq: an approach for detecting exact breakpoints of deletions with low-coverage sequence data.
#@Jin Zhang,Yufeng Wu
#t2011
#cBioinformatics
#index3250791
#% 
#!
  
#*deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns.
#@David Langenberger,Sachin Pundhir,Claus Thorn Ekstrøm,Peter F. Stadler,Steve Hoffmann,Jan Gorodkin
#t2012
#cBioinformatics
#index3250764
#% 
#!
  
#*PRINCIPLE: a tool for associating genes with diseases via network propagation.
#@Assaf Gottlieb,Oded Magger,Igor Berman,Eytan Ruppin,Roded Sharan
#t2011
#cBioinformatics
#index3250743
#% 
#!
  
#*An infrastructure for ontology-based information systems in biomedicine: RICORDO case study.
#@Sarala M. Wimalaratne,Pierre Grenon,Robert Hoehndorf,Georgios V. Gkoutos,Bernard de Bono
#t2012
#cBioinformatics
#index3250736
#% 
#!
  
#*Predicting residue-residue contacts using random forest models.
#@Yunqi Li,Yaping Fang,Jianwen Fang
#t2011
#cBioinformatics
#index3250725
#% 
#!
  
#*AMPA: an automated web server for prediction of protein antimicrobial regions.
#@Marc Torrent,Paolo Di Tommaso,David Pulido,Victòria M. Nogués,Cédric Notredame,Ester Boix,David Andreu
#t2012
#cBioinformatics
#index3250720
#% 
#!
  
#*InFiRe - a novel computational method for the identification of insertion sites in transposon mutagenized bacterial genomes.
#@Olga Shevchuk,Louisa Roselius,Gabriele Günther,Johannes Klein,Dieter Jahn,Michael Steinert,Richard Münch
#t2012
#cBioinformatics
#index3250769
#% 
#!
  
#*MDpocket: open-source cavity detection and characterization on molecular dynamics trajectories.
#@Peter Schmidtke,Axel Bidon-Chanal,F. Javier Luque,Xavier Barril
#t2011
#cBioinformatics
#index3250771
#% 
#!
  
#*MetalionRNA: computational predictor of metal-binding sites in RNA structures.
#@Anna Philips,Kaja Milanowska,Grzegorz Lach,Michal Boniecki,Kristian Rother,Janusz M. Bujnicki
#t2012
#cBioinformatics
#index3250803
#% 
#!
  
#*Extraction of data deposition statements from the literature: a method for automatically tracking research results.
#@Aurélie Névéol,W. John Wilbur,Zhiyong Lu
#t2011
#cBioinformatics
#index3250810
#% 
#!
  
#*A novel structural position-specific scoring matrix for the prediction of protein secondary structures.
#@Dapeng Li,Tonghua Li,Peisheng Cong,Wenwei Xiong,Jiangming Sun
#t2012
#cBioinformatics
#index3250801
#% 
#!
  
#*SVGMap: configurable image browser for experimental data.
#@Xavier Rafael-Palou,Michael P. Schroeder,Núria López-Bigas
#t2012
#cBioinformatics
#index3250812
#% 
#!
  
#*A robust clustering algorithm for identifying problematic samples in genome-wide association studies.
#@Céline Bellenguez,Amy Strange,Colin Freeman,Peter Donnelly,Chris C. A. Spencer
#t2012
#cBioinformatics
#index3250719
#% 
#!
  
#*Data-driven information retrieval in heterogeneous collections of transcriptomics data links to malignant pleural mesothelioma.
#@José Caldas,Nils Gehlenborg,Eeva Kettunen,Ali Faisal,Mikko Rönty,Andrew G. Nicholson,Sakari Knuutila,Alvis Brazma,Samuel Kaski
#t2012
#cBioinformatics
#index3250825
#% 
#!
  
#*PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq).
#@Robert Kofler,Ram Vinay Pandey,Christian Schlötterer
#t2011
#cBioinformatics
#index3250772
#% 
#!
  
#*Fast scaffolding with small independent mixed integer programs.
#@Leena Salmela,Veli Mäkinen,Niko Välimäki,Johannes Ylinen,Esko Ukkonen
#t2011
#cBioinformatics
#index3250770
#% 
#!
  
#*MyBioNet: interactively visualize, edit and merge biological networks on the Web.
#@Donglin Huang,Yiling Huang,Youhuang Bai,Dijun Chen,Ralf Hofestädt,Christian Klukas,Ming Chen
#t2011
#cBioinformatics
#index3250827
#% 
#!
  
#*MissForest - non-parametric missing value imputation for mixed-type data.
#@Daniel J. Stekhoven,Peter Bühlmann
#t2012
#cBioinformatics
#index3250748
#% 
#!
  
#*Detection of microRNAs in color space.
#@Antonio Marco,Sam Griffiths-Jones
#t2012
#cBioinformatics
#index3250726
#% 
#!
  
#*PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments.
#@David T. Jones,Daniel W. A. Buchan,Domenico Cozzetto,Massimiliano Pontil
#t2012
#cBioinformatics
#index3250826
#% 
#!
  
#*Sparse distance-based learning for simultaneous multiclass classification and feature selection of metagenomic data.
#@Zhenqiu Liu,William Hsiao,Brandi L. Cantarel,Elliott Franco Drábek,Claire Fraser-Liggett
#t2011
#cBioinformatics
#index3250830
#% 
#!
  
#*Identification of context-specific gene regulatory networks with GEMULA - gene expression modeling using LAsso.
#@Geert Geeven,Ronald E. van Kesteren,August B. Smit,Mathisca C. M. de Gunst
#t2012
#cBioinformatics
#index3250744
#% 
#!
  
#*RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing.
#@Yuanxin Xi,Christoph Bock,Fabian Müller,Deqiang Sun,Alexander Meissner,Wei Li
#t2012
#cBioinformatics
#index3250705
#% 
#!
  
#*Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data.
#@Valentina Boeva,Tatiana Popova,Kevin Bleakley,Pierre Chiche,Julie Cappo,Gudrun Schleiermacher,Isabelle Janoueix-Lerosey,Olivier Delattre,Emmanuel Barillot
#t2012
#cBioinformatics
#index3250763
#% 
#!
  
#*Construction and completion of flux balance models from pathway databases.
#@Mario Latendresse,Markus Krummenacker,Miles Trupp,Peter D. Karp
#t2012
#cBioinformatics
#index3250761
#% 
#!
  
#*QuRe: software for viral quasispecies reconstruction from next-generation sequencing data.
#@Mattia C. F. Prosperi,Marco Salemi
#t2012
#cBioinformatics
#index3250728
#% 
#!
  
#*NRPSsp: non-ribosomal peptide synthase substrate predictor.
#@Carlos Prieto,Carlos García-Estrada,Diego Lorenzana,Juan Francisco Martín
#t2012
#cBioinformatics
#index3250835
#% 
#!
  
#*Identifying quantitative trait loci via group-sparse multitask regression and feature selection: an imaging genetics study of the ADNI cohort.
#@Hua Wang,Feiping Nie,Heng Huang,Sungeun Kim,Kwangsik Nho,Shannon L. Risacher,Andrew J. Saykin,Li Shen
#t2012
#cBioinformatics
#index3250795
#% 
#!
  
#*Discovering transcription factor regulatory targets using gene expression and binding data.
#@Mark Maienschein-Cline,Jie Zhou,Kevin P. White,Roger Sciammas,Aaron R. Dinner
#t2012
#cBioinformatics
#index3250722
#% 
#!
  
#*Inferring sequence regions under functional divergence in duplicate genes.
#@Yi-Fei Huang,G. Brian Golding
#t2012
#cBioinformatics
#index3250788
#% 
#!
  
#*GWAtoolbox: an R package for fast quality control and handling of genome-wide association studies meta-analysis data.
#@Christian Fuchsberger,Daniel Taliun,Peter P. Pramstaller,Cristian Pattaro
#t2012
#cBioinformatics
#index3250747
#% 
#!
  
#*SCPC: a method to structurally compare protein complexes.
#@Ryotaro Koike,Motonori Ota
#t2012
#cBioinformatics
#index3250778
#% 
#!
  
#*Integrating human and murine anatomical gene expression data for improved comparisons.
#@Natalia Jiménez-Lozano,Joan Segura,José Ramón Macías,Juanjo Vega,José María Carazo
#t2012
#cBioinformatics
#index3250785
#% 
#!
  
#*Genome: automating genome exploration.
#@Mikhail G. Dozmorov,Lukas R. Cara,Cory B. Giles,Jonathan D. Wren
#t2012
#cBioinformatics
#index3250741
#% 
#!
  
#*Response: an empirical comparison of several recent epistatic interaction detection methods.
#@Yue Wang,Guimei Liu,Mengling Feng,Limsoon Wong
#t2012
#cBioinformatics
#index3250735
#% 
#!
  
#*Decompositions of large-scale biological systems based on dynamical properties.
#@Nicola Soranzo,Fahimeh Ramezani,Giovanni Iacono,Claudio Altafini
#t2012
#cBioinformatics
#index3250829
#% 
#!
  
#*seeQTL: a searchable database for human eQTLs.
#@Kai Xia,Andrey A. Shabalin,Shunping Huang,Vered Madar,Yi-Hui Zhou,Wei Wang,Fei Zou,Wei Sun,Patrick F. Sullivan,Fred A. Wright
#t2012
#cBioinformatics
#index3250713
#% 
#!
  
#*miREnvironment Database: providing a bridge for microRNAs, environmental factors and phenotypes.
#@Qingqing Yang,Chengxiang Qiu,Jie Yang,Qing Wu,Qinghua Cui
#t2011
#cBioinformatics
#index3250817
#% 
#!
  
#*TIP: A probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles.
#@Chao Cheng,Renqiang Min,Mark Gerstein
#t2011
#cBioinformatics
#index3250796
#% 
#!
  
#*B-SOLANA: an approach for the analysis of two-base encoding bisulfite sequencing data.
#@Benjamin Kreck,George Marnellos,Julia Richter,Felix Krueger,Reiner Siebert,Andre Franke
#t2012
#cBioinformatics
#index3250750
#% 
#!
  
#*Computational network analysis of the anatomical and genetic organizations in the mouse brain.
#@Shuiwang Ji
#t2011
#cBioinformatics
#index3250823
#% 
#!
  
#*Pybedtools: a flexible Python library for manipulating genomic datasets and annotations.
#@Ryan K. Dale,Brent S. Pedersen,Aaron R. Quinlan
#t2011
#cBioinformatics
#index3250777
#% 
#!
  
#*Gathering insights on disease etiology from gene expression profiles of healthy tissues.
#@A. Sofia Silva,Shona H. Wood,Sipko van Dam,Sven Berres,Anne McArdle,João Pedro de Magalhães
#t2011
#cBioinformatics
#index3250734
#% 
#!
  
#*PopDrowser: the Population Drosophila Browser.
#@Miquel Ràmia,Pablo Librado,Sònia Casillas,Julio Rozas,Antonio Barbadilla
#t2012
#cBioinformatics
#index3311157
#% 
#!
  
#*Improved mean estimation and its application to diagonal discriminant analysis.
#@Tiejun Tong,Liang Chen,Hongyu Zhao
#t2012
#cBioinformatics
#index3311152
#% 
#!
  
#*The role of miRNAs in complex formation and control.
#@Wilson Wen Bin Goh,Hirotaka Oikawa,Judy Chia Ghee Sng,Marek J. Sergot,Limsoon Wong
#t2012
#cBioinformatics
#index3311139
#% 
#!
  
#*Fast large-scale clustering of protein structures using Gauss integrals.
#@Tim Harder,Mikael Borg,Wouter Boomsma,Peter Røgen,Thomas Hamelryck
#t2012
#cBioinformatics
#index3311159
#% 
#!
  
#*MeQA: a pipeline for MeDIP-seq data quality assessment and analysis.
#@J. Huang,V. Renault,J. Sengenès,Nizar Touleimat,S. Michel,Mark G. Lathrop,J. Tost
#t2012
#cBioinformatics
#index3311142
#% 
#!
  
#*PIE : searching PubMed literature for protein interaction information.
#@Sun Kim,Dongseop Kwon,Soo-Yong Shin,W. John Wilbur
#t2012
#cBioinformatics
#index3311140
#% 
#!
  
#*ART: a next-generation sequencing read simulator.
#@Weichun Huang,Leping Li,Jason R. Myers,Gabor T. Marth
#t2012
#cBioinformatics
#index3311149
#% 
#!
  
#*Measuring the distance between multiple sequence alignments.
#@Benjamin P. Blackburne,Simon Whelan
#t2012
#cBioinformatics
#index3311151
#% 
#!
  
#*SNPdbe: constructing an nsSNP functional impacts database.
#@Christian Schaefer,Alice Meier,Burkhard Rost,Yana Bromberg
#t2012
#cBioinformatics
#index3311160
#% 
#!
  
#*BPDA2d - a 2D global optimization-based Bayesian peptide detection algorithm for liquid chromatograph-mass spectrometry.
#@Youting Sun,Jianqiu Zhang,Ulisses Braga-Neto,Edward R. Dougherty
#t2012
#cBioinformatics
#index3311137
#% 
#!
  
#*MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences.
#@Phil Arnold,Ionas Erb,Mikhail Pachkov,Nacho Molina,Erik van Nimwegen
#t2012
#cBioinformatics
#index3311146
#% 
#!
  
#*htSeqTools: high-throughput sequencing quality control, processing and visualization in R.
#@Evarist Planet,Camille Stephan-Otto Attolini,Oscar Reina,Oscar Flores,David Rossell
#t2012
#cBioinformatics
#index3311154
#% 
#!
  
#*Robust rank aggregation for gene list integration and meta-analysis.
#@Raivo Kolde,Sven Laur,Priit Adler,Jaak Vilo
#t2012
#cBioinformatics
#index3311153
#% 
#!
  
#*LaTcOm: a web server for visualizing rare codon clusters in coding sequences.
#@Athina Theodosiou,Vasilis J. Promponas
#t2012
#cBioinformatics
#index3311143
#% 
#!
  
#*VarSifter: Visualizing and analyzing exome-scale sequence variation data on a desktop computer.
#@Jamie K. Teer,Eric D. Green,James C. Mullikin,Leslie G. Biesecker
#t2012
#cBioinformatics
#index3311156
#% 
#!
  
#*Approximating the set of local minima in partial RNA folding landscapes.
#@S. Sahoo,A. A. Albrecht
#t2012
#cBioinformatics
#index3311148
#% 
#!
  
#*PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data.
#@Yanju Zhang,Eric-Wubbo Lameijer,Peter A. C. 't Hoen,Zemin Ning,P. Eline Slagboom,Kai Ye
#t2012
#cBioinformatics
#index3311136
#% 
#!
  
#*Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome.
#@Isaac S. Kohane,Vladimir I. Valtchinov
#t2012
#cBioinformatics
#index3311145
#% 
#!
  
#*JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures.
#@Thilo Muth,Juan A. García-Martín,Antonio Rausell,David de Juan,Alfonso Valencia,Florencio Pazos
#t2012
#cBioinformatics
#index3311141
#% 
#!
  
#*Identifying small interfering RNA loci from high-throughput sequencing data.
#@Thomas J. Hardcastle,Krystyna A. Kelly,David C. Baulcombe
#t2012
#cBioinformatics
#index3311135
#% 
#!
  
#*CLARE: Cracking the LAnguage of Regulatory Elements.
#@Leila Taher,Leelavati Narlikar,Ivan Ovcharenko
#t2012
#cBioinformatics
#index3311155
#% 
#!
  
#*BOCTOPUS: improved topology prediction of transmembrane β barrel proteins.
#@Sikander Hayat,Arne Elofsson
#t2012
#cBioinformatics
#index3311161
#% 
#!
  
#*Modeling mechanistic biological networks: An advanced Boolean approach.
#@Thomas Handorf,Edda Klipp
#t2012
#cBioinformatics
#index3311147
#% 
#!
  
#*ESpritz: accurate and fast prediction of protein disorder.
#@Ian Walsh,Alberto J. M. Martin,Tomàs Di Domenico,Silvio C. E. Tosatto
#t2012
#cBioinformatics
#index3311150
#% 
#!
  
#*Read count approach for DNA copy number variants detection.
#@Alberto Magi,Lorenzo Tattini,Tommaso Pippucci,Francesca Torricelli,Matteo Benelli
#t2012
#cBioinformatics
#index3311138
#% 
#!
  
#*Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data.
#@Tim Carver,Simon R. Harris,Matthew Berriman,Julian Parkhill,Jacqueline A. McQuillan
#t2012
#cBioinformatics
#index3311144
#% 
#!
  
#*Optimal structural inference of signaling pathways from unordered and overlapping gene sets.
#@Lipi R. Acharya,Thair Judeh,Guangdi Wang,Dongxiao Zhu
#t2012
#cBioinformatics
#index3311158
#% 
#!
  
#*Improved synapse detection for mGRASP-assisted brain connectivity mapping.
#@Linqing Feng,Ting Zhao,Jinhyun Kim
#t2012
#cBioinformatics
#index3364321
#% 
#!
  
#*BESC knowledgebase public portal.
#@Mustafa H. Syed,Tatiana V. Karpinets,Morey Parang,Michael R. Leuze,Byung-Hoon Park,Doug Hyatt,Steven D. Brown,Steve Moulton,Michael D. Galloway,Edward C. Uberbacher
#t2012
#cBioinformatics
#index3364177
#% 
#!
  
#*Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.
#@Martin Wu,Alexandra J. Scott
#t2012
#cBioinformatics
#index3364286
#% 
#!
  
#*Fast protein binding site comparisons using visual words representation.
#@Bin Pang,Nan Zhao,Dmitry Korkin,Chi-Ren Shyu
#t2012
#cBioinformatics
#index3364263
#% 
#!
  
#*Interactome-transcriptome integration for predicting distant metastasis in breast cancer.
#@Maxime Garcia,Raphaelle Millat-Carus,François Bertucci,Pascal Finetti,Daniel Birnbaum,Ghislain Bidaut
#t2012
#cBioinformatics
#index3364189
#% 
#!
  
#*A metagenomic assembly program for shotgun DNA reads.
#@Binbin Lai,Ruogu Ding,Yang Li,Liping Duan,Huaiqiu Zhu
#t2012
#cBioinformatics
#index3364274
#% 
#!
  
#*Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS.
#@Anne-Katrin Emde,Marcel H. Schulz,David Weese,Ruping Sun,Martin Vingron,Vera M. Kalscheuer,Stefan A. Haas,Knut Reinert
#t2012
#cBioinformatics
#index3364211
#% 
#!
  
#*Using biologically interrelated experiments to identify pathway genes in .
#@Kyungpil Kim,Keni Jiang,Siew Leng Teng,Lewis J. Feldman,Haiyan Huang
#t2012
#cBioinformatics
#index3364328
#% 
#!
  
#*SEQanswers: an open access community for collaboratively decoding genomes.
#@Jing-Woei Li,Robert Schmieder,R. Matthew Ward,Joann Delenick,Eric C. Olivares,David Mittelman
#t2012
#cBioinformatics
#index3364313
#% 
#!
  
#*pIRS: Profile-based Illumina pair-end reads simulator.
#@Xuesong Hu,Jianying Yuan,Yujian Shi,Jianliang Lu,Binghang Liu,Zhenyu Li,Yanxiang Chen,Desheng Mu,Hao Zhang,Nan Li,Zhen Yue,Fan Bai,Heng Li,Wei Fan
#t2012
#cBioinformatics
#index3364180
#% 
#!
  
#*Transformations for the compression of FASTQ quality scores of next-generation sequencing data.
#@Raymond Wan,Vo Ngoc Anh,Kiyoshi Asai
#t2012
#cBioinformatics
#index3364198
#% 
#!
  
#*SynaptomeDB: an ontology-based knowledgebase for synaptic genes.
#@Mehdi Pirooznia,Tao Wang,Dimitrios Avramopoulos,David Valle,Gareth Thomas,Richard L. Huganir,Fernando S. Goes,James B. Potash,Peter P. Zandi
#t2012
#cBioinformatics
#index3364363
#% 
#!
  
#*nEASE: a method for gene ontology subclassification of high-throughput gene expression data.
#@Thomas W. Chittenden,Eleanor Howe,Jennifer M. Taylor,Jessica C. Mar,Martin J. Aryee,Harold Gómez,Razvan Sultana,John C. Braisted,Sarita J. Nair,John Quackenbush,Chris Holmes
#t2012
#cBioinformatics
#index3364171
#% 
#!
  
#*PhyLAT: a phylogenetic local alignment tool.
#@Hongtao Sun,Jeremy D. Buhler
#t2012
#cBioinformatics
#index3364374
#% 
#!
  
#*Stability of gene rankings from RNAi screens.
#@Juliane Siebourg,Gunter Merdes,Benjamin Misselwitz,Wolf-Dietrich Hardt,Niko Beerenwinkel
#t2012
#cBioinformatics
#index3364206
#% 
#!
  
#*Evaluating the Bicoid morphogen gradient system through dissecting the noise in transcriptional bursts.
#@Feng He,Jie Ren,Wei Wang,Jun Ma
#t2012
#cBioinformatics
#index3364324
#% 
#!
  
#*Utilizing RNA-Seq data for coexpression network inference.
#@Ovidiu D. Iancu,Sunita Kawane,Daniel Bottomly,Robert Searles,Robert Hitzemann,Shannon McWeeney
#t2012
#cBioinformatics
#index3364249
#% 
#!
  
#*A new statistical approach to detecting differentially methylated loci for case control Illumina array methylation data.
#@Zhongxue Chen,Qingzhong Liu,Saralees Nadarajah
#t2012
#cBioinformatics
#index3364278
#% 
#!
  
#*A comprehensive computational model of facilitated diffusion in prokaryotes.
#@Nicolae Radu Zabet,Boris Adryan
#t2012
#cBioinformatics
#index3364369
#% 
#!
  
#*JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data.
#@Andrew Roth,Jiarui Ding,Ryan D. Morin,Anamaria Crisan,Gavin Ha,Ryan Giuliany,Ali Bashashati,Martin Hirst,Gulisa Turashvili,Arusha Oloumi,Marco A. Marra,Sam Aparicio,Sohrab P. Shah
#t2012
#cBioinformatics
#index3364229
#% 
#!
  
#*optiCall: a robust genotype-calling algorithm for rare, low-frequency and common variants.
#@T. S. Shah,J. Z. Liu,J. A. B. Floyd,James A. Morris,N. Wirth,Jeffrey C. Barrett,C. A. Anderson
#t2012
#cBioinformatics
#index3364135
#% 
#!
  
#*GLOGS: a fast and powerful method for GWAS of binary traits with risk covariates in related populations.
#@Stephen A. Stanhope,Mark Abney
#t2012
#cBioinformatics
#index3364269
#% 
#!
  
#*A new approach to bias correction in RNA-Seq.
#@Daniel C. Jones,Walter L. Ruzzo,Xinxia Peng,Michael G. Katze
#t2012
#cBioinformatics
#index3364372
#% 
#!
  
#*ArchTEx: accurate extraction and visualization of next-generation sequence data.
#@William K. M. Lai,Jonathan E. Bard,Michael J. Buck
#t2012
#cBioinformatics
#index3364306
#% 
#!
  
#*Predicting the lethal phenotype of the knockout mouse by integrating comprehensive genomic data.
#@Yuan Yuan,Yanxun Xu,Jianfeng Xu,Robyn L. Ball,Han Liang
#t2012
#cBioinformatics
#index3364216
#% 
#!
  
#*CpGassoc: an R function for analysis of DNA methylation microarray data.
#@Richard T. Barfield,Varun Kilaru,Alicia K. Smith,Karen N. Conneely
#t2012
#cBioinformatics
#index3364252
#% 
#!
  
#*Data-driven integration of epidemiological and toxicological data to select candidate interacting genes and environmental factors in association with disease.
#@Chirag J. Patel,Rong Chen,Atul J. Butte
#t2012
#cBioinformatics
#index3364279
#% 
#!
  
#*robust RNA-seq assembly across the dynamic range of expression levels.
#@Marcel H. Schulz,Daniel Zerbino,Martin Vingron,Ewan Birney
#t2012
#cBioinformatics
#index3364288
#% 
#!
  
#*How networks change with time.
#@Yongjin Park,Joel S. Bader
#t2012
#cBioinformatics
#index3364250
#% 
#!
  
#*SBAL: a practical tool to generate and edit structure-based amino acid sequence alignments.
#@Conan K. Wang,Ursula Broder,Saroja K. Weeratunga,Robin B. Gasser,Alex Loukas,Andreas Hofmann
#t2012
#cBioinformatics
#index3364151
#% 
#!
  
#*Chado Controller: advanced annotation management with a community annotation system.
#@Valentin Guignon,Gaëtan Droc,Michael Alaux,Franc-Christophe Baurens,Olivier Garsmeur,Claire Poiron,Tim Carver,Mathieu Rouard,Stéphanie Bocs
#t2012
#cBioinformatics
#index3364240
#% 
#!
  
#*Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform.
#@Anthony J. Cox,Markus J. Bauer,Tobias Jakobi,Giovanna Rosone
#t2012
#cBioinformatics
#index3364297
#% 
#!
  
#*Mytoe: automatic analysis of mitochondrial dynamics.
#@Eero Lihavainen,Jarno Mäkelä,Johannes N. Spelbrink,Andre S. Ribeiro
#t2012
#cBioinformatics
#index3364300
#% 
#!
  
#*Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure.
#@Vladimir Reinharz,François Major,Jérôme Waldispühl
#t2012
#cBioinformatics
#index3364231
#% 
#!
  
#*Literature mining of host-pathogen interactions: comparing feature-based supervised learning and language-based approaches.
#@Thanh Thieu,Sneha Joshi,Samantha Warren,Dmitry Korkin
#t2012
#cBioinformatics
#index3364258
#% 
#!
  
#*Mirroring co-evolving trees in the light of their topologies.
#@Iman Hajirasouliha,Alexander Schönhuth,David de Juan,Alfonso Valencia,Süleyman Cenk Sahinalp
#t2012
#cBioinformatics
#index3364315
#% 
#!
  
#*AnnTools: a comprehensive and versatile annotation toolkit for genomic variants.
#@Vladimir Makarov,Tina O'Grady,Guiqing Cai,Jayon Lihm,Joseph D. Buxbaum,Seungtai Yoon
#t2012
#cBioinformatics
#index3364126
#% 
#!
  
#*CytoSaddleSum: a functional enrichment analysis plugin for Cytoscape based on sum-of-weights scores.
#@Aleksandar Stojmirovic,Alexander Bliskovsky,Yi-Kuo Yu
#t2012
#cBioinformatics
#index3364251
#% 
#!
  
#*NuST: analysis of the interplay between nucleoid organization and gene expression.
#@Vittore F. Scolari,Mina Zarei,Matteo Osella,M. Cosentino Lagomarsino
#t2012
#cBioinformatics
#index3364172
#% 
#!
  
#*BioQ: tracing experimental origins in public genomic databases using a novel data provenance model.
#@Scott F. Saccone,Jiaxi Quan,Peter L. Jones
#t2012
#cBioinformatics
#index3364178
#% 
#!
  
#*Matrix eQTL: ultra fast eQTL analysis via large matrix operations.
#@Andrey A. Shabalin
#t2012
#cBioinformatics
#index3364322
#% 
#!
  
#*Susceptibility of the human pathways graphs to fragmentation by small sets of microRNAs.
#@Guy Naamati,Yitzhak Friedman,Ohad Balaga,Michal Linial
#t2012
#cBioinformatics
#index3364257
#% 
#!
  
#*Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA).
#@Björn Schwalb,Daniel Schulz,Mai Sun,Benedikt Zacher,Sebastian Dümcke,Dietmar E. Martin,Patrick Cramer,Achim Tresch
#t2012
#cBioinformatics
#index3364239
#% 
#!
  
#*Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events.
#@Matthieu Chartier,Francis Gaudreault,Rafael Najmanovich
#t2012
#cBioinformatics
#index3364197
#% 
#!
  
#*PHACTS, a computational approach to classifying the lifestyle of phages.
#@Katelyn McNair,Barbara A. Bailey,Robert A. Edwards
#t2012
#cBioinformatics
#index3364136
#% 
#!
  
#*SED-ED, a workflow editor for computational biology experiments written in SED-ML.
#@Richard R. Adams
#t2012
#cBioinformatics
#index3364215
#% 
#!
  
#*WegoLoc: accurate prediction of protein subcellular localization using weighted Gene Ontology terms.
#@Sang-Mun Chi,Dougu Nam
#t2012
#cBioinformatics
#index3364287
#% 
#!
  
#*An effective statistical evaluation of ChIPseq dataset similarity.
#@Maria D. Chikina,Olga G. Troyanskaya
#t2012
#cBioinformatics
#index3364354
#% 
#!
  
#*A hybrid approach to protein differential expression in mass spectrometry-based proteomics.
#@Xuan Wang,Gordon A. Anderson,Richard D. Smith,Alan R. Dabney
#t2012
#cBioinformatics
#index3364212
#% 
#!
  
#*Combining multiple approaches for gene microarray classification.
#@Loris Nanni,Sheryl Brahnam,Alessandra Lumini
#t2012
#cBioinformatics
#index3364256
#% 
#!
  
#*Signal analysis for genome-wide maps of histone modifications measured by ChIP-seq.
#@Dominik Beck,Miriam Brandl,Lies Boelen,Ashwin Unnikrishnan,John E. Pimanda,Jason W. H. Wong
#t2012
#cBioinformatics
#index3364361
#% 
#!
  
#*influx_s: increasing numerical stability and precision for metabolic flux analysis in isotope labelling experiments.
#@Serguei Sokol,Pierre Millard,Jean-Charles Portais
#t2012
#cBioinformatics
#index3364305
#% 
#!
  
#*A single source -shortest paths algorithm to infer regulatory pathways in a gene network.
#@Yu-Keng Shih,Srinivasan Parthasarathy
#t2012
#cBioinformatics
#index3364247
#% 
#!
  
#*SSuMMo: rapid analysis, comparison and visualization of microbial communities.
#@Alex L. B. Leach,James P. J. Chong,Kelly R. Redeker
#t2012
#cBioinformatics
#index3364190
#% 
#!
  
#*IDBA-UD: a assembler for single-cell and metagenomic sequencing data with highly uneven depth.
#@Yu Peng,Henry C. M. Leung,Siu-Ming Yiu,Francis Y. L. Chin
#t2012
#cBioinformatics
#index3364230
#% 
#!
  
#*Bayesian integration of networks without gold standards.
#@Jochen Weile,Katherine James,Jennifer Hallinan,Simon J. Cockell,Phillip W. Lord,Anil Wipat,Darren J. Wilkinson
#t2012
#cBioinformatics
#index3364303
#% 
#!
  
#*Estimating population diversity with CatchAll.
#@John Bunge,Linda Woodard,Dankmar Böhning,James A. Foster,Sean Connolly,Heather K. Allen
#t2012
#cBioinformatics
#index3364205
#% 
#!
  
#*A method of finding optimal weight factors for compound identification in gas chromatography-mass spectrometry.
#@Seongho Kim,Imhoi Koo,Xiaoli Wei,Xiang Zhang
#t2012
#cBioinformatics
#index3364134
#% 
#!
  
#*Evaluating bacterial gene-finding HMM structures as probabilistic logic programs.
#@Søren Mørk,Ian Holmes
#t2012
#cBioinformatics
#index3364277
#% 
#!
  
#*Incorporating prior information into association studies.
#@Gregory Darnell,Dat Duong,Buhm Han,Eleazar Eskin
#t2012
#cBioinformatics
#index3364138
#% 
#!
  
#*Proteus: a web-based, context-specific modelling tool for molecular networks.
#@Florian Gnad,Javier Estrada,Jeremy Gunawardena
#t2012
#cBioinformatics
#index3364280
#% 
#!
  
#*A strategy for building neuroanatomy ontologies.
#@David Osumi-Sutherland,Simon Reeve,Christopher J. Mungall,Fabian Neuhaus,Alan Ruttenberg,Gregory S. X. E. Jefferis,J. Douglas Armstrong
#t2012
#cBioinformatics
#index3364316
#% 
#!
  
#*A Boolean network model of the FA/BRCA pathway.
#@Alfredo Rodríguez,David Sosa,Leda Torres,Bertha Molina,Sara Frías,Luis Mendoza
#t2012
#cBioinformatics
#index3364308
#% 
#!
  
#*Improving the TFold test for differential shotgun proteomics.
#@Paulo C. Carvalho,John R. Yates III,Valmir C. Barbosa
#t2012
#cBioinformatics
#index3364348
#% 
#!
  
#*Evolutionary inaccuracy of pairwise structural alignments.
#@Michael I. Sadowski,William R. Taylor
#t2012
#cBioinformatics
#index3364323
#% 
#!
  
#*Rapid identification of non-human sequences in high-throughput sequencing datasets.
#@Aparna Bhaduri,Kun Qu,Carolyn S. Lee,Alexander Ungewickell,Paul A. Khavari
#t2012
#cBioinformatics
#index3364336
#% 
#!
  
#*Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss.
#@Mukul S. Bansal,Eric J. Alm,Manolis Kellis
#t2012
#cBioinformatics
#index3364232
#% 
#!
  
#*Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.
#@Raoul J. P. Bonnal,Jan Aerts,George Githinji,Naohisa Goto,Daniel MacLean,Chase A. Miller,Hiroyuki Mishima,Massimiliano Pagani,Ricardo Ramirez-Gonzalez,Geert Smant,Francesco Strozzi,Rob Syme,Rutger A. Vos,Trevor J. Wennblom,Ben J. Woodcroft,Toshiaki Katayama,Pjotr Prins
#t2012
#cBioinformatics
#index3364161
#% 
#!
  
#*Estimating abundances of retroviral insertion sites from DNA fragment length data.
#@Charles C. Berry,Nicolas A. Gillet,Anat Melamed,Niall Gormley,Charles R. M. Bangham,Frederic D. Bushman
#t2012
#cBioinformatics
#index3364242
#% 
#!
  
#*Ranking viruses: measures of positional importance within networks define core viruses for rational polyvalent vaccine development.
#@Tavis K. Anderson,William W. Laegreid,Francesco Cerutti,Fernando A. Osorio,Eric A. Nelson,Jane Christopher-Hennings,Tony L. Goldberg
#t2012
#cBioinformatics
#index3364233
#% 
#!
  
#*ChemSpot: a hybrid system for chemical named entity recognition.
#@Tim Rocktäschel,Michael Weidlich,Ulf Leser
#t2012
#cBioinformatics
#index3364175
#% 
#!
  
#*CHROMATRA: a Galaxy tool for visualizing genome-wide chromatin signatures.
#@Thomas Hentrich,Julia M. Schulze,Eldon Emberly,Michael S. Kobor
#t2012
#cBioinformatics
#index3364356
#% 
#!
  
#*Deriving transcriptional programs and functional processes from gene expression databases.
#@Jeffrey T. Chang
#t2012
#cBioinformatics
#index3364270
#% 
#!
  
#*Automatic selection of reference taxa for protein-protein interaction prediction with phylogenetic profiling.
#@Martin Simonsen,Stefan Maetschke,Mark A. Ragan
#t2012
#cBioinformatics
#index3364254
#% 
#!
  
#*GenomeRing: alignment visualization based on SuperGenome coordinates.
#@Alexander Herbig,G. Jäger,Florian Battke,Kay Nieselt
#t2012
#cBioinformatics
#index3364295
#% 
#!
  
#*Mining and evaluation of molecular relationships in literature.
#@Christian Senger,Björn A. Grüning,Anika Erxleben,Kersten Döring,Hitesh Patel,Stephan Flemming,Irmgard Merfort,Stefan Günther
#t2012
#cBioinformatics
#index3364227
#% 
#!
  
#*Genotype calling from next-generation sequencing data using haplotype information of reads.
#@Degui Zhi,Jihua Wu,Nianjun Liu,Kui Zhang
#t2012
#cBioinformatics
#index3364353
#% 
#!
  
#*Spliceman - a computational web server that predicts sequence variations in pre-mRNA splicing.
#@Kian Huat Lim,William G. Fairbrother
#t2012
#cBioinformatics
#index3364187
#% 
#!
  
#*TSSi - an R package for transcription start site identification from 5′ mRNA tag data.
#@C. Kreutz,J. S. Gehring,D. Lang,Ralf Reski,Jens Timmer,Stefan A. Rensing
#t2012
#cBioinformatics
#index3364174
#% 
#!
  
#*Industrial methodology for process verification in research (IMPROVER): toward systems biology verification.
#@Pablo Meyer,Julia Hoeng,John Jeremy Rice,Raquel Norel,Jörg Sprengel,Katrin Stolle,Thomas Bonk,Stephanie Corthesy,Ajay K. Royyuru,Manuel C. Peitsch,Gustavo Stolovitzky
#t2012
#cBioinformatics
#index3364152
#% 
#!
  
#*Surrogate variable analysis using partial least squares (SVA-PLS) in gene expression studies.
#@Sutirtha Chakraborty,Somnath Datta,Susmita Datta
#t2012
#cBioinformatics
#index3364351
#% 
#!
  
#*Assumption weighting for incorporating heterogeneity into meta-analysis of genomic data.
#@Yihan Li,Debashis Ghosh
#t2012
#cBioinformatics
#index3364204
#% 
#!
  
#*Roundup 2.0: enabling comparative genomics for over 1800 genomes.
#@Todd F. DeLuca,Jike Cui,Jae-Yoon Jung,Kristian Che St. Gabriel,Dennis P. Wall
#t2012
#cBioinformatics
#index3364341
#% 
#!
  
#*Editorial.
#@Bonnie Berger
#t2012
#cBioinformatics
#index3364160
#% 
#!
  
#*SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone.
#@Noah Daniels,Raghavendra Hosur,Bonnie Berger,Lenore J. Cowen
#t2012
#cBioinformatics
#index3364342
#% 
#!
  
#*Fulcrum: condensing redundant reads from high-throughput sequencing studies.
#@Matthew S. Burriesci,Erik M. Lehnert,John R. Pringle
#t2012
#cBioinformatics
#index3364173
#% 
#!
  
#*SiteComp: a server for ligand binding site analysis in protein structures.
#@Yingjie Lin,Seungyeul Yoo,Roberto Sanchez
#t2012
#cBioinformatics
#index3364319
#% 
#!
  
#*A scalable and portable framework for massively parallel variable selection in genetic association studies.
#@Gary K. Chen
#t2012
#cBioinformatics
#index3364213
#% 
#!
  
#*Bioimage informatics: a new category in .
#@Hanchuan Peng,Alex Bateman,Alfonso Valencia,Jonathan D. Wren
#t2012
#cBioinformatics
#index3364267
#% 
#!
  
#*StochSens - matlab package for sensitivity analysis of stochastic chemical systems.
#@Michal Komorowski,Justina Zurauskiene,Michael P. H. Stumpf
#t2012
#cBioinformatics
#index3364276
#% 
#!
  
#*IDEOM: an Excel interface for analysis of LC-MS-based metabolomics data.
#@Darren J. Creek,Andris Jankevics,Karl E. V. Burgess,Rainer Breitling,Michael P. Barrett
#t2012
#cBioinformatics
#index3364131
#% 
#!
  
#*e-Drug3D: 3D structure collections dedicated to drug repurposing and fragment-based drug design.
#@Emilie Pihan,Lionel Colliandre,Jean-François Guichou,Dominique Douguet
#t2012
#cBioinformatics
#index3364362
#% 
#!
  
#*Dissect: detection and characterization of novel structural alterations in transcribed sequences.
#@Deniz Yörükoglu,Faraz Hach,Lucas Swanson,Colin Collins,Inanç Birol,Süleyman Cenk Sahinalp
#t2012
#cBioinformatics
#index3364367
#% 
#!
  
#*Ligand-binding site prediction using ligand-interacting and binding site-enriched protein triangles.
#@Zhong-Ru Xie,Ming-Jing Hwang
#t2012
#cBioinformatics
#index3364218
#% 
#!
  
#*ISMB 2012 Committee.
#@
#t2012
#cBioinformatics
#index3364162
#% 
#!
  
#*IsoCor: correcting MS data in isotope labeling experiments.
#@Pierre Millard,Fabien Letisse,Serguei Sokol,Jean-Charles Portais
#t2012
#cBioinformatics
#index3364196
#% 
#!
  
#*PaGeFinder: quantitative identification of spatiotemporal pattern genes.
#@Jian-Bo Pan,Shi-chang Hu,Hao Wang,Quan Zou,Zhi-Liang Ji
#t2012
#cBioinformatics
#index3364255
#% 
#!
  
#*Predicting folding free energy changes upon single point mutations.
#@Zhe Zhang,Lin Wang,Yang Gao,Jie Zhang,Maxim Zhenirovskyy,Emil Alexov
#t2012
#cBioinformatics
#index3364241
#% 
#!
  
#*R/DWD: distance-weighted discrimination for classification, visualization and batch adjustment.
#@Hanwen Huang,Xiaosun Lu,Yufeng Liu,Perry Haaland,J. S. Marron
#t2012
#cBioinformatics
#index3364376
#% 
#!
  
#*OCAP: an open comprehensive analysis pipeline for iTRAQ.
#@Penghao Wang,Pengyi Yang,Jean Yee Hwa Yang
#t2012
#cBioinformatics
#index3364343
#% 
#!
  
#*RNA-Seq Atlas - a reference database for gene expression profiling in normal tissue by next-generation sequencing.
#@Markus Krupp,Jens U. Marquardt,Ugur Sahin,Peter R. Galle,John C. Castle,Andreas Teufel
#t2012
#cBioinformatics
#index3364137
#% 
#!
  
#*Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data.
#@Matthew Kearse,Richard Moir,Amy Wilson,Steven Stones-Havas,Matthew Cheung,Shane S. Sturrock,Simon Buxton,Alex Cooper,Sidney Markowitz,Chris Duran,Tobias Thierer,Bruce Ashton,Peter L. Meintjes,Alexei Drummond
#t2012
#cBioinformatics
#index3364234
#% 
#!
  
#*Fast and accurate inference of local ancestry in Latino populations.
#@Yael Baran,Bogdan Pasaniuc,Sriram Sankararaman,Dara G. Torgerson,Christopher Gignoux,Celeste Eng,William Rodriguez-Cintron,Rocio Chapela,Jean G. Ford,Pedro C. Avila,Jose Rodriguez-Santana,Esteban Gonzàlez Burchard,Eran Halperin
#t2012
#cBioinformatics
#index3364248
#% 
#!
  
#*GROMACS molecule & liquid database.
#@David van der Spoel,Paul J. van Maaren,Carl Caleman
#t2012
#cBioinformatics
#index3364188
#% 
#!
  
#*Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome.
#@Isaac S. Kohane,Vladimir I. Valtchinov
#t2012
#cBioinformatics
#index3364228
#% 
#!
  
#*Functional microRNA targets in protein coding sequences.
#@Martin Reczko,Manolis Maragkakis,Panagiotis Alexiou,Ivo Grosse,Artemis G. Hatzigeorgiou
#t2012
#cBioinformatics
#index3364157
#% 
#!
  
#*Gencrypt: one-way cryptographic hashes to detect overlapping individuals across samples.
#@Michael C. Turchin,Joel Hirschhorn
#t2012
#cBioinformatics
#index3364195
#% 
#!
  
#*RIBER/DIBER: a software suite for crystal content analysis in the studies of protein-nucleic acid complexes.
#@Grzegorz Chojnowski,Janusz M. Bujnicki,Matthias Bochtler
#t2012
#cBioinformatics
#index3364332
#% 
#!
  
#*Estimating the order of mutations during tumorigenesis from tumor genome sequencing data.
#@Ahrim Youn,Richard Simon
#t2012
#cBioinformatics
#index3364359
#% 
#!
  
#*Extending ontologies by finding siblings using set expansion techniques.
#@Götz Fabian,Thomas Wächter,Michael Schroeder
#t2012
#cBioinformatics
#index3364186
#% 
#!
  
#*Weighted pooling - practical and cost-effective techniques for pooled high-throughput sequencing.
#@David Golan,Yaniv Erlich,Saharon Rosset
#t2012
#cBioinformatics
#index3364275
#% 
#!
  
#*Lineage-based identification of cellular states and expression programs.
#@Tatsunori Hashimoto,Tommi Jaakkola,Richard Sherwood,Esteban O. Mazzoni,Hynek Wichterle,David K. Gifford
#t2012
#cBioinformatics
#index3364214
#% 
#!
  
#*Shift-2: graphic validation of protein structures.
#@Osvaldo A. Martin,Jorge A. Vila,Harold A. Scheraga
#t2012
#cBioinformatics
#index3364203
#% 
#!
  
#*JETTA: junction and exon toolkits for transcriptome analysis.
#@Junhee Seok,Weihong Xu,Hong Gao,Ronald W. Davis,Wenzhong Xiao
#t2012
#cBioinformatics
#index3364370
#% 
#!
  
#*MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations.
#@Adam Hospital,Pau Andrio,Carlos Fenollosa,Damjan Cicin-Sain,Modesto Orozco,Josep Lluis Gelpí
#t2012
#cBioinformatics
#index3364298
#% 
#!
  
#*Positional correlation analysis improves reconstruction of full-length transcripts and alternative isoforms from noisy array signals or short reads.
#@Shuji Kawaguchi,Kei Iida,Erimi Harada,Kousuke Hanada,Akihiro Matsui,Masanori Okamoto,Kazuo Shinozaki,Motoaki Seki,Tetsuro Toyoda
#t2012
#cBioinformatics
#index3364282
#% 
#!
  
#*FX: an RNA-Seq analysis tool on the cloud.
#@Dongwan Hong,Arang Rhie,Sung-Soo Park,Jongkeun Lee,Young Seok Ju,Sujung Kim,Saet-Byeol Yu,Thomas Bleazard,Hyun Seok Park,Hwanseok Rhee,Hyonyong Chong,Kap-Seok Yang,Yeon-Su Lee,In-Hoo Kim,Jin Soo Lee,Jong-Il Kim,Jeong-Sun Seo
#t2012
#cBioinformatics
#index3364318
#% 
#!
  
#*a tool for the generation of explicit ensemble descriptions of intrinsically disordered proteins and their associated experimental observables.
#@Valéry Ozenne,Frédéric Bauer,Loïc Salmon,Jie-rong Huang,Malene Ringkjøbing Jensen,Stéphane Segard,Pau Bernadó,Céline Charavay,Martin Blackledge
#t2012
#cBioinformatics
#index3364176
#% 
#!
  
#*Predicting giant transmembrane β-barrel architecture.
#@Cyril F. Reboul,Khalid Mahmood,James C. Whisstock,Michelle A. Dunstone
#t2012
#cBioinformatics
#index3364320
#% 
#!
  
#*Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads.
#@Ruping Sun,Michael I. Love,Tomasz Zemojtel,Anne-Katrin Emde,Ho-Ryun Chung,Martin Vingron,Stefan A. Haas
#t2012
#cBioinformatics
#index3364226
#% 
#!
  
#*The identification of short linear motif-mediated interfaces within the human interactome.
#@Robert J. Weatheritt,Katja Luck,E. Petsalaki,Norman E. Davey,Toby J. Gibson
#t2012
#cBioinformatics
#index3364159
#% 
#!
  
#*YOABS: yet other aligner of biological sequences - an efficient linearly scaling nucleotide aligner.
#@Vitaly L. Galinsky
#t2012
#cBioinformatics
#index3364181
#% 
#!
  
#*SNP calling using genotype model selection on high-throughput sequencing data.
#@Na You,Gabriel Murillo,Xiaoquan Su,Xiaowei Zeng,Jian Xu,Kang Ning,Shoudong Zhang,Jiankang Zhu,Xinping Cui
#t2012
#cBioinformatics
#index3364345
#% 
#!
  
#*ape 3.0: New tools for distance-based phylogenetics and evolutionary analysis in R.
#@Andrei-Alin Popescu,Katharina T. Huber,Emmanuel Paradis
#t2012
#cBioinformatics
#index3364191
#% 
#!
  
#*Detection of differentially expressed segments in tiling array data.
#@Christian Otto,Kristin Reiche,Jörg Hackermüller
#t2012
#cBioinformatics
#index3364168
#% 
#!
  
#*vHOG, a multispecies vertebrate ontology of homologous organs groups.
#@Anne Niknejad,Aurélie Comte,Gilles Parmentier,Julien Roux,Frederic B. Bastian,Marc Robinson-Rechavi
#t2012
#cBioinformatics
#index3364235
#% 
#!
  
#*A method to infer positive selection from marker dynamics in an asexual population.
#@Christopher J. R. Illingworth,Ville Mustonen
#t2012
#cBioinformatics
#index3364281
#% 
#!
  
#*Truncated branch and bound achieves efficient constraint-based genetic design.
#@Dennis Egen,Desmond S. Lun
#t2012
#cBioinformatics
#index3364253
#% 
#!
  
#*GECA: a fast tool for gene evolution and conservation analysis in eukaryotic protein families.
#@Nizar Fawal,Bruno Savelli,Christophe Dunand,Catherine Mathé
#t2012
#cBioinformatics
#index3364208
#% 
#!
  
#*A subspace method for the detection of transcription factor binding sites.
#@Erola Pairo,Joan Maynou,Santiago Marco,Alexandre Perera
#t2012
#cBioinformatics
#index3364199
#% 
#!
  
#*LOESS correction for length variation in gene set-based genomic sequence analysis.
#@Anton Aboukhalil,Martha L. Bulyk
#t2012
#cBioinformatics
#index3364148
#% 
#!
  
#*Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays.
#@Nima Aghaeepour,Pratip K. Chattopadhyay,Anuradha Ganesan,Kieran O'Neill,Habil Zare,Adrin Jalali,Holger H. Hoos,Mario Roederer,Ryan R. Brinkman
#t2012
#cBioinformatics
#index3364158
#% 
#!
  
#*PINALOG: a novel approach to align protein interaction networks - implications for complex detection and function prediction.
#@Hang T. T. Phan,Michael J. E. Sternberg
#t2012
#cBioinformatics
#index3364139
#% 
#!
  
#*Fast alignment of fragmentation trees.
#@Franziska Hufsky,Kai Dührkop,Florian Rasche,Markus Chimani,Sebastian Böcker
#t2012
#cBioinformatics
#index3364244
#% 
#!
  
#*Protein subcellular location pattern classification in cellular images using latent discriminative models.
#@Jieyue Li,Liang Xiong,Jeff G. Schneider,Robert F. Murphy
#t2012
#cBioinformatics
#index3364301
#% 
#!
  
#*DADP: the database of anuran defense peptides.
#@Mario Novkovic,Juraj Simunic,Viktor Bojovic,Alessandro Tossi,Davor Juretic
#t2012
#cBioinformatics
#index3364145
#% 
#!
  
#*Novel domain combinations in proteins encoded by chimeric transcripts.
#@Milana Frenkel-Morgenstern,Alfonso Valencia
#t2012
#cBioinformatics
#index3364166
#% 
#!
  
#*Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses.
#@Laurent Jourdren,Maria Bernard,Marie-Agnès Dillies,Stéphane Le Crom
#t2012
#cBioinformatics
#index3364220
#% 
#!
  
#*A co-module approach for elucidating drug-disease associations and revealing their molecular basis.
#@Shiwen Zhao,Shao Li
#t2012
#cBioinformatics
#index3364217
#% 
#!
  
#*Probabilistic suffix array: efficient modeling and prediction of protein families.
#@Jie Lin,Donald A. Adjeroh,Bing-Hua Jiang
#t2012
#cBioinformatics
#index3364310
#% 
#!
  
#*NOrMAL: accurate nucleosome positioning using a modified Gaussian mixture model.
#@Anton Polishko,Nadia Ponts,Karine G. Le Roch,Stefano Lonardi
#t2012
#cBioinformatics
#index3364346
#% 
#!
  
#*Detection of allele-specific methylation through a generalized heterogeneous epigenome model.
#@Qian Peng,Joseph R. Ecker
#t2012
#cBioinformatics
#index3364262
#% 
#!
  
#*RFMapp: ribosome flow model application.
#@Hadas Zur,Tamir Tuller
#t2012
#cBioinformatics
#index3364133
#% 
#!
  
#*DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol.
#@Nicholas Smith,Shawn Witham,Subhra Sarkar,Jie Zhang,Lin Li,Chuan Li,Emil Alexov
#t2012
#cBioinformatics
#index3364268
#% 
#!
  
#*Defining and providing robust controls for microRNA prediction.
#@William Ritchie,Dadi Gao,John E. J. Rasko
#t2012
#cBioinformatics
#index3364339
#% 
#!
  
#*medpie: an information extraction package for medical message board posts.
#@Adrian Benton,John H. Holmes,S. Hill,Annie Chung,Lyle Ungar
#t2012
#cBioinformatics
#index3364140
#% 
#!
  
#*Approximate probabilistic analysis of biopathway dynamics.
#@Bing Liu,Andrei Hagiescu,Sucheendra K. Palaniappan,Bipasa Chattopadhyay,Zheng Cui,Weng-Fai Wong,P. S. Thiagarajan
#t2012
#cBioinformatics
#index3364325
#% 
#!
  
#*RNA-SeQC: RNA-seq metrics for quality control and process optimization.
#@David S. DeLuca,Joshua Z. Levin,Andrey Sivachenko,Tim Fennell,Marc-Danie Nazaire,Chris Williams,Michael Reich,Wendy Winckler,Gad Getz
#t2012
#cBioinformatics
#index3364128
#% 
#!
  
#*Improving your target-template alignment with MODalign.
#@Alessandro Barbato,Pascal Benkert,Torsten Schwede,Anna Tramontano,Jan Kosinski
#t2012
#cBioinformatics
#index3364340
#% 
#!
  
#*IMID: integrated molecular interaction database.
#@Sentil Balaji,Charles Mcclendon,Rajesh Chowdhary,Jun S. Liu,Jinfeng Zhang
#t2012
#cBioinformatics
#index3364337
#% 
#!
  
#*ReLA, a local alignment search tool for the identification of distal and proximal gene regulatory regions and their conserved transcription factor binding sites.
#@Santi González,Bàrbara Montserrat-Sentís,Friman Sánchez,Montserrat Puiggròs,Enrique Blanco,Alex Ramírez,David Torrents
#t2012
#cBioinformatics
#index3364317
#% 
#!
  
#*Rknots: topological analysis of knotted biopolymers with R.
#@Federico Comoglio,Maurizio Rinaldi
#t2012
#cBioinformatics
#index3364192
#% 
#!
  
#*Automated gene-model curation using global discriminative learning.
#@Axel Bernal,Koby Crammer,Fernando Pereira
#t2012
#cBioinformatics
#index3364182
#% 
#!
  
#*FindGeo: a tool for determining metal coordination geometry.
#@Claudia Andreini,Gabriele Cavallaro,Serena Lorenzini
#t2012
#cBioinformatics
#index3364185
#% 
#!
  
#*Unipro UGENE: a unified bioinformatics toolkit.
#@Konstantin Okonechnikov,Olga Golosova,Mikhail Fursov
#t2012
#cBioinformatics
#index3364292
#% 
#!
  
#*GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
#@Alexey A. Gritsenko,Jurgen F. Nijkamp,Marcel J. T. Reinders,Dick de Ridder
#t2012
#cBioinformatics
#index3364125
#% 
#!
  
#*Toward community standards in the quest for orthologs.
#@Christophe Dessimoz,Toni Gabaldón,David S. Roos,Erik L. L. Sonnhammer,Javier Herrero
#t2012
#cBioinformatics
#index3364289
#% 
#!
  
#*Matching experiments across species using expression values and textual information.
#@Aaron Wise,Zoltán N. Oltvai,Ziv Bar-Joseph
#t2012
#cBioinformatics
#index3364271
#% 
#!
  
#*Automatic recognition of conceptualization zones in scientific articles and two life science applications.
#@Maria Liakata,Shyamasree Saha,Simon Dobnik,Colin R. Batchelor,Dietrich Rebholz-Schuhmann
#t2012
#cBioinformatics
#index3364207
#% 
#!
  
#*The Transcriptome Analysis and Comparison Explorer - T-ACE: a platform-independent, graphical tool to process large RNAseq datasets of non-model organisms.
#@E. E. R. Philipp,L. Kraemer,D. Mountfort,M. Schilhabel,S. Schreiber,Philip Rosenstiel
#t2012
#cBioinformatics
#index3364329
#% 
#!
  
#*DACTAL: divide-and-conquer trees (almost) without alignments.
#@Serita M. Nelesen,Kevin Liu,Li-San Wang,C. Randal Linder,Tandy Warnow
#t2012
#cBioinformatics
#index3364219
#% 
#!
  
#*Xenome - a tool for classifying reads from xenograft samples.
#@Thomas C. Conway,Jeremy Wazny,Andrew J. Bromage,Martin Tymms,Dhanya Sooraj,Elizabeth D. Williams,Bryan Beresford-Smith
#t2012
#cBioinformatics
#index3364312
#% 
#!
  
#*PERMORY-MPI: a program for high-speed parallel permutation testing in genome-wide association studies.
#@Volker Steiß,Thomas Letschert,Helmut Schäfer,Roman Pahl
#t2012
#cBioinformatics
#index3364261
#% 
#!
  
#*MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins.
#@Fatemeh Miri Disfani,Wei-Lun Hsu,Marcin J. Mizianty,Christopher J. Oldfield,Bin Xue,A. Keith Dunker,Vladimir N. Uversky,Lukasz A. Kurgan
#t2012
#cBioinformatics
#index3364147
#% 
#!
  
#*WHIDE - a web tool for visual data mining colocation patterns in multivariate bioimages.
#@Jan Kölling,Daniel Langenkämper,Sylvie Abouna,Michael Khan,Tim W. Nattkemper
#t2012
#cBioinformatics
#index3364146
#% 
#!
  
#*PSI-Search: iterative HOE-reduced profile SSEARCH searching.
#@Weizhong Li,Hamish McWilliam,Mickael Goujon,Andrew Cowley,Rodrigo Lopez,William R. Pearson
#t2012
#cBioinformatics
#index3364373
#% 
#!
  
#*FTEC: a coalescent simulator for modeling faster than exponential growth.
#@Mark Reppell,Michael Boehnke,Sebastian Zöllner
#t2012
#cBioinformatics
#index3364307
#% 
#!
  
#*IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data.
#@Dan Wang,Li Yan,Qiang Hu,Lara E. Sucheston,Michael J. Higgins,Christine B. Ambrosone,Candace S. Johnson,Dominic J. Smiraglia,Song Liu
#t2012
#cBioinformatics
#index3364165
#% 
#!
  
#*Causal reasoning on biological networks: interpreting transcriptional changes.
#@Leonid Chindelevitch,Daniel Ziemek,Ahmed Enayetallah,Ranjit Randhawa,Ben Sidders,Christoph Brockel,Enoch S. Huang
#t2012
#cBioinformatics
#index3364349
#% 
#!
  
#*COPICAT: a software system for predicting interactions between proteins and chemical compounds.
#@Yasubumi Sakakibara,Tsuyoshi Hachiya,Miho Uchida,Nobuyoshi Nagamine,Yohei Sugawara,Masahiro Yokota,Masaomi Nakamura,Kris Popendorf,Takashi Komori,Kengo Sato
#t2012
#cBioinformatics
#index3364243
#% 
#!
  
#*pymzML - Python module for high-throughput bioinformatics on mass spectrometry data.
#@Till Bald,Johannes Barth,Anna Niehues,Michael Specht,Michael Hippler,Christian Fufezan
#t2012
#cBioinformatics
#index3364360
#% 
#!
  
#*ADMIT: a toolbox for guaranteed model invalidation, estimation and qualitative-quantitative modeling.
#@Stefan Streif,Anton Savchenko,Philipp Rumschinski,Steffen Borchers,Rolf Findeisen
#t2012
#cBioinformatics
#index3364225
#% 
#!
  
#*MageComet - web application for harmonizing existing large-scale experiment descriptions.
#@Vincent Xue,Tony Burdett,Margus Lukk,Julie Taylor,Alvis Brazma,Helen E. Parkinson
#t2012
#cBioinformatics
#index3364358
#% 
#!
  
#*Bpipe: a tool for running and managing bioinformatics pipelines.
#@Simon P. Sadedin,Bernard Pope,Alicia Oshlack
#t2012
#cBioinformatics
#index3364283
#% 
#!
  
#*GMD: measuring the distance between histograms with applications on high-throughput sequencing reads.
#@Xiaobei Zhao,Albin Sandelin
#t2012
#cBioinformatics
#index3364296
#% 
#!
  
#*DeOri: a database of eukaryotic DNA replication origins.
#@Feng Gao,Hao Luo,Chun-Ting Zhang
#t2012
#cBioinformatics
#index3364331
#% 
#!
  
#*TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots.
#@Matthew G. Seetin,David H. Mathews
#t2012
#cBioinformatics
#index3364155
#% 
#!
  
#*MetExtract: a new software tool for the automated comprehensive extraction of metabolite-derived LC/MS signals in metabolomics research.
#@Christoph Bueschl,Bernhard Kluger,Franz Berthiller,Gerald Lirk,Stephan Winkler,Rudolf Krska,Rainer Schuhmacher
#t2012
#cBioinformatics
#index3364167
#% 
#!
  
#*On the calculation of signal transduction ability of signaling transduction pathways in intracellular communication: systematic approach.
#@Bor-Sen Chen,Chia-Chou Wu
#t2012
#cBioinformatics
#index3364179
#% 
#!
  
#*AntigenMap 3D: an online antigenic cartography resource.
#@J. Lamar Barnett,Jialiang Yang,Zhipeng Cai,Tong Zhang,Xiu-Feng Wan
#t2012
#cBioinformatics
#index3364344
#% 
#!
  
#*Inferring gene regulatory networks by ANOVA.
#@Robert Küffner,Tobias Petri,Pegah Tavakkolkhah,Lukas Windhager,Ralf Zimmer
#t2012
#cBioinformatics
#index3364266
#% 
#!
  
#*Tachyon search speeds up retrieval of similar sequences by several orders of magnitude.
#@Joshua Tan,Durga Kuchibhatla,Fernanda L. Sirota,Westley A. Sherman,Tobias Gattermayer,Chia Yee Kwoh,Frank Eisenhaber,Georg Schneider,Sebastian Maurer-Stroh
#t2012
#cBioinformatics
#index3364164
#% 
#!
  
#*GOHTAM: a website for 'Genomic Origin of Horizontal Transfers, Alignment and Metagenomics'.
#@Sabine Ménigaud,Ludovic Mallet,Géraldine Picord,Cécile Churlaud,Alexandre Borrel,Patrick Deschavanne
#t2012
#cBioinformatics
#index3364368
#% 
#!
  
#*A Bayesian approach to targeted experiment design.
#@J. Vanlier,C. A. Tiemann,Peter A. J. Hilbers,Natal A. W. van Riel
#t2012
#cBioinformatics
#index3364355
#% 
#!
  
#*SAMSCOPE: an OpenGL-based real-time interactive scale-free SAM viewer.
#@Kris Popendorf,Yasubumi Sakakibara
#t2012
#cBioinformatics
#index3364143
#% 
#!
  
#*SEQuel: improving the accuracy of genome assemblies.
#@Roy Ronen,Christina Boucher,Hamidreza Chitsaz,Pavel A. Pevzner
#t2012
#cBioinformatics
#index3364210
#% 
#!
  
#*Mining and integration of pathway diagrams from imaging data.
#@Sergey Kozhenkov,Michael Baitaluk
#t2012
#cBioinformatics
#index3364326
#% 
#!
  
#*Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers.
#@Jan Hoinka,Elena Zotenko,Adam Friedman,Zuben E. Sauna,Teresa M. Przytycka
#t2012
#cBioinformatics
#index3364246
#% 
#!
  
#*WaVPeak: picking NMR peaks through wavelet-based smoothing and volume-based filtering.
#@Zhi Liu,Ahmed Abbas,Bing-Yi Jing,Xin Gao
#t2012
#cBioinformatics
#index3364222
#% 
#!
  
#*GraphClust: alignment-free structural clustering of local RNA secondary structures.
#@Steffen Heyne,Fabrizio Costa,Dominic Rose,Rolf Backofen
#t2012
#cBioinformatics
#index3364184
#% 
#!
  
#*CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human.
#@Bo Qin,Meng Zhou,Ying Ge,Len Taing,Tao Liu,Qian Wang,Su Wang,Junsheng Chen,Lingling Shen,Xikun Duan,Sheng'en Hu,Wei Li,Henry Long,Yong Zhang,X. Shirley Liu
#t2012
#cBioinformatics
#index3364304
#% 
#!
  
#*A gene-based test of association using canonical correlation analysis.
#@Clara S. Tang,Manuel A. R. Ferreira
#t2012
#cBioinformatics
#index3364272
#% 
#!
  
#*Discriminating response groups in metabolic and regulatory pathway networks.
#@John L. Van Hemert,Julie A. Dickerson
#t2012
#cBioinformatics
#index3364236
#% 
#!
  
#*A novel signal processing approach for the detection of copy number variations in the human genome.
#@Catherine Stamoulis,Rebecca A. Betensky
#t2012
#cBioinformatics
#index3364127
#% 
#!
  
#*Joint stage recognition and anatomical annotation of gene expression patterns.
#@Xiao Cai,Hua Wang,Heng Huang,Chris H. Q. Ding
#t2012
#cBioinformatics
#index3364201
#% 
#!
  
#*Leveraging input and output structures for joint mapping of epistatic and marginal eQTLs.
#@Seunghak Lee,Eric P. Xing
#t2012
#cBioinformatics
#index3364290
#% 
#!
  
#*Differential variability improves the identification of cancer risk markers in DNA methylation studies profiling precursor cancer lesions.
#@Andrew E. Teschendorff,Martin Widschwendter
#t2012
#cBioinformatics
#index3364265
#% 
#!
  
#*graph2tab, a library to convert experimental workflow graphs into tabular formats.
#@Marco Brandizi,Natalja Kurbatova,Ugis Sarkans,Philippe Rocca-Serra
#t2012
#cBioinformatics
#index3364311
#% 
#!
  
#*Predicting kinase substrates using conservation of local motif density.
#@Andy C. W. Lai,Alex N. Nguyen Ba,Alan M. Moses
#t2012
#cBioinformatics
#index3364299
#% 
#!
  
#*NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment.
#@Rogan Carr,Elhanan Borenstein
#t2012
#cBioinformatics
#index3364375
#% 
#!
  
#*DOMIRE: a web server for identifying structural domains and their neighbors in proteins.
#@Franck Samson,Richard Shrager,Chin-Hsien Tai,Vichetra Sam,Byungkook Lee,Peter J. Munson,Jean-François Gibrat,Jean Garnier
#t2012
#cBioinformatics
#index3364284
#% 
#!
  
#*: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure.
#@Mathieu Gautier,Renaud Vitalis
#t2012
#cBioinformatics
#index3364170
#% 
#!
  
#*DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism.
#@Derek Aguiar,Bjarni V. Halldórsson,Eric M. Morrow,Sorin Istrail
#t2012
#cBioinformatics
#index3364365
#% 
#!
  
#*HandAlign: Bayesian multiple sequence alignment, phylogeny and ancestral reconstruction.
#@Oscar Westesson,Lars Barquist,Ian Holmes
#t2012
#cBioinformatics
#index3364347
#% 
#!
  
#*Application of canonical correlation analysis for identifying viral integration preferences.
#@Ergun Gumus,Olcay Kursun,Ahmet Sertbas,Duran Ustek
#t2012
#cBioinformatics
#index3364150
#% 
#!
  
#*The evolution of nitrogen fixation in cyanobacteria.
#@Natasha Latysheva,Vivien L. Junker,William J. Palmer,Geoffrey A. Codd,Daniel Barker
#t2012
#cBioinformatics
#index3364334
#% 
#!
  
#*Fast stochastic algorithm for simulating evolutionary population dynamics.
#@William H. Mather,Jeff Hasty,Lev S. Tsimring
#t2012
#cBioinformatics
#index3364141
#% 
#!
  
#*GENI-DB: a database of global events for epidemic intelligence.
#@Nigel Collier,Son Doan
#t2012
#cBioinformatics
#index3364153
#% 
#!
  
#*State and parameter estimation of the heat shock response system using Kalman and particle filters.
#@Xin Liu,Mahesan Niranjan
#t2012
#cBioinformatics
#index3364285
#% 
#!
  
#*High-quality sequence clustering guided by network topology and multiple alignment likelihood.
#@Vincent Miele,Simon Penel,Vincent Daubin,Franck Picard,Daniel Kahn,Laurent Duret
#t2012
#cBioinformatics
#index3364202
#% 
#!
  
#*Exact coalescent simulation of new haplotype data from existing reference haplotypes.
#@Chul Joo Kang,Paul Marjoram
#t2012
#cBioinformatics
#index3364144
#% 
#!
  
#*Rigorous assessment of gene set enrichment tests.
#@Haroon Naeem,Ralf Zimmer,Pegah Tavakkolkhah,Robert Küffner
#t2012
#cBioinformatics
#index3364259
#% 
#!
  
#*SOAP3: ultra-fast GPU-based parallel alignment tool for short reads.
#@Chi-Man Liu,Thomas K. F. Wong,Edward Wu,Ruibang Luo,Siu-Ming Yiu,Yingrui Li,Bingqiang Wang,Chang Yu,Xiaowen Chu,Kaiyong Zhao,Ruiqiang Li,Tak Wah Lam
#t2012
#cBioinformatics
#index3364294
#% 
#!
  
#*CRNreals: a toolbox for distinguishability and identifiability analysis of biochemical reaction networks.
#@Gábor Szederkényi,Julio R. Banga,Antonio A. Alonso
#t2012
#cBioinformatics
#index3364237
#% 
#!
  
#*Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks.
#@Christopher A. Penfold,Vicky Buchanan-Wollaston,Katherine J. Denby,David L. Wild
#t2012
#cBioinformatics
#index3364193
#% 
#!
  
#*The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
#@Jeffrey T. Leek,W. Evan Johnson,Hilary S. Parker,Andrew E. Jaffe,John D. Storey
#t2012
#cBioinformatics
#index3364335
#% 
#!
  
#*CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED.
#@Matthew DeJongh,Benjamin Bockstege,Paul Frybarger,Nicholas Hazekamp,Joshua Kammeraad,Travis McGeehan
#t2012
#cBioinformatics
#index3364200
#% 
#!
  
#*GeneclusterViz: a tool for conserved gene cluster visualization, exploration and analysis.
#@Vikas Rao Pejaver,Jaehyun An,SungMin Rhee,Ankita Bhan,Jeong-Hyeon Choi,Boshu Liu,Heewook Lee,Pamela J. Brown,David Kysela,Yves V. Brun,Sun Kim
#t2012
#cBioinformatics
#index3364183
#% 
#!
  
#*CONTRA: copy number analysis for targeted resequencing.
#@Jason Li,Richard Lupat,Kaushalya C. Amarasinghe,Ella R. Thompson,Maria A. Doyle,Georgina L. Ryland,Richard W. Tothill,Saman K. Halgamuge,Ian G. Campbell,Kylie L. Gorringe
#t2012
#cBioinformatics
#index3364330
#% 
#!
  
#*Ranking of multidimensional drug profiling data by fractional-adjusted bi-partitional scores.
#@Dorit S. Hochbaum,Chun-Nan Hsu,Yan T. Yang
#t2012
#cBioinformatics
#index3364291
#% 
#!
  
#*Penalized logistic regression for high-dimensional DNA methylation data with case-control studies.
#@Hokeun Sun,Shuang Wang
#t2012
#cBioinformatics
#index3364366
#% 
#!
  
#*Modeling community-wide molecular networks of multicellular systems.
#@Kakajan Komurov
#t2012
#cBioinformatics
#index3364130
#% 
#!
  
#*Minimum message length inference of secondary structure from protein coordinate data.
#@Arun Siddharth Konagurthu,Arthur M. Lesk,Lloyd Allison
#t2012
#cBioinformatics
#index3364156
#% 
#!
  
#*ShapePheno: unsupervised extraction of shape phenotypes from biological image collections.
#@Theofanis Karaletsos,Oliver Stegle,Christine Dreyer,John M. Winn,Karsten M. Borgwardt
#t2012
#cBioinformatics
#index3364245
#% 
#!
  
#*AutoLabDB: a substantial open source database schema to support a high-throughput automated laboratory.
#@Andrew Sparkes,Amanda Clare
#t2012
#cBioinformatics
#index3364223
#% 
#!
  
#*NanoStringNorm: an extensible R package for the pre-processing of NanoString mRNA and miRNA data.
#@Daryl Waggott,Kenneth Chu,Shaoming Yin,Bradly G. Wouters,Fei-Fei Liu,Paul C. Boutros
#t2012
#cBioinformatics
#index3364314
#% 
#!
  
#*1001 Proteomes: a functional proteomics portal for the analysis of accessions.
#@Hiren J. Joshi,Katy M. Christiansen,Joffrey Fitz,Jun Cao,Anna Lipzen,Joel Martin,A. Michelle Smith-Moritz,Len A. Pennacchio,Wendy S. Schackwitz,Detlef Weigel,Joshua L. Heazlewood
#t2012
#cBioinformatics
#index3364163
#% 
#!
  
#*Small-molecule inhibitor starting points learned from protein-protein interaction inhibitor structure.
#@David Ryan Koes,Carlos J. Camacho
#t2012
#cBioinformatics
#index3364352
#% 
#!
  
#*Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty.
#@Haixuan Yang,Tamás Nepusz,Alberto Paccanaro
#t2012
#cBioinformatics
#index3364273
#% 
#!
  
#*Harmonization of gene/protein annotations: towards a gold standard MEDLINE.
#@David Campos,Sérgio Matos,Ian Lewin,José Luís Oliveira,Dietrich Rebholz-Schuhmann
#t2012
#cBioinformatics
#index3364333
#% 
#!
  
#*CentiLib: comprehensive analysis and exploration of network centralities.
#@Johannes Gräßler,Dirk Koschützki,Falk Schreiber
#t2012
#cBioinformatics
#index3364371
#% 
#!
  
#*An integrated strategy for prediction uncertainty analysis.
#@J. Vanlier,C. A. Tiemann,Peter A. J. Hilbers,Natal A. W. van Riel
#t2012
#cBioinformatics
#index3364302
#% 
#!
  
#*Recognition models to predict DNA-binding specificities of homeodomain proteins.
#@Ryan G. Christensen,Metewo Selase Enuameh,Marcus B. Noyes,Michael H. Brodsky,Scot A. Wolfe,Gary D. Stormo
#t2012
#cBioinformatics
#index3364338
#% 
#!
  
#*Allele-specific expression analysis methods for high-density SNP microarray data.
#@Ruijie Liu,Ana-Teresa Maia,Roslin Russell,Carlos Caldas,Bruce A. Ponder,Matthew E. Ritchie
#t2012
#cBioinformatics
#index3364142
#% 
#!
  
#*PathVisio-Validator: a rule-based validation plugin for graphical pathway notations.
#@Kumar Chandan,Martijn P. van Iersel,Mirit I. Aladjem,Kurt W. Kohn,Augustin Luna
#t2012
#cBioinformatics
#index3364209
#% 
#!
  
#*GRiP: a computational tool to simulate transcription factor binding in prokaryotes.
#@Nicolae Radu Zabet,Boris Adryan
#t2012
#cBioinformatics
#index3364238
#% 
#!
  
#*Reno: regularized non-parametric analysis of protein lysate array data.
#@Bin Li,Feng Liang,Jianhua Hu,Xuming He
#t2012
#cBioinformatics
#index3364309
#% 
#!
  
#*Ranking models of transmembrane -barrel proteins using Z-coordinate predictions.
#@Sikander Hayat,Arne Elofsson
#t2012
#cBioinformatics
#index3364260
#% 
#!
  
#*A Bayesian approach for estimating calibration curves and unknown concentrations in immunoassays.
#@Feng Feng,Ana Paula Sales,Thomas B. Kepler
#t2012
#cBioinformatics
#index3364221
#% 
#!
  
#*DecoyFinder: an easy-to-use python GUI application for building target-specific decoy sets.
#@Adrià Cereto-Massagué,Laura Guasch,Cristina Valls,Miquel Mulero,Gerard Pujadas,Santiago Garcia-Vallvé
#t2012
#cBioinformatics
#index3364169
#% 
#!
  
#*Identifying disease sensitive and quantitative trait-relevant biomarkers from multidimensional heterogeneous imaging genetics data via sparse multimodal multitask learning.
#@Hua Wang,Feiping Nie,Heng Huang,Shannon L. Risacher,Andrew J. Saykin,Li Shen
#t2012
#cBioinformatics
#index3364224
#% 
#!
  
#*Predicting relapse prior to transplantation in chronic myeloid leukemia by integrating expert knowledge and expression data.
#@Ka Yee Yeung,T. A. Gooley,A. Zhang,Adrian E. Raftery,J. P. Radich,V. G. Oehler
#t2012
#cBioinformatics
#index3364293
#% 
#!
  
#*Hadoop-BAM: directly manipulating next generation sequencing data in the cloud.
#@Matti Niemenmaa,Aleksi Kallio,André Schumacher,Petri Klemelä,Eija Korpelainen,Keijo Heljanko
#t2012
#cBioinformatics
#index3364132
#% 
#!
  
#*Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts.
#@Jonathan Göke,Marcel H. Schulz,Julia Lasserre,Martin Vingron
#t2012
#cBioinformatics
#index3364129
#% 
#!
  
#*CODEX: exploration of semantic changes between ontology versions.
#@Michael Hartung,Anika Gross,Erhard Rahm
#t2012
#cBioinformatics
#index3364264
#% 
#!
  
#*xQTL workbench: a scalable web environment for multi-level QTL analysis.
#@Danny Arends,K. Joeri van der Velde,Pjotr Prins,Karl W. Broman,Steffen Möller,Ritsert C. Jansen,Morris A. Swertz
#t2012
#cBioinformatics
#index3364357
#% 
#!
  
#*Rchange: algorithms for computing energy changes of RNA secondary structures in response to base mutations.
#@Hisanori Kiryu,Kiyoshi Asai
#t2012
#cBioinformatics
#index3364327
#% 
#!
  
#*Statistical model-based testing to evaluate the recurrence of genomic aberrations.
#@Atsushi Niida,Seiya Imoto,Teppei Shimamura,Satoru Miyano
#t2012
#cBioinformatics
#index3364154
#% 
#!
  
#*A conditional neural fields model for protein threading.
#@Jianzhu Ma,Jian Peng,Sheng Wang,Jinbo Xu
#t2012
#cBioinformatics
#index3364364
#% 
#!
  
#*MMFPh: a maximal motif finder for phosphoproteomics datasets.
#@Tuobin Wang,Arminja N. Kettenbach,Scott A. Gerber,Chris Bailey-Kellogg
#t2012
#cBioinformatics
#index3364149
#% 
#!
  
#*motif discovery facilitates identification of interactions between transcription factors in .
#@Mei-Ju May Chen,Lih-Ching Chou,Tsung-Ting Hsieh,Ding-Dar Lee,Kai-Wei Liu,Chi-Yuan Yu,Yen-Jen Oyang,Huai-Kuang Tsai,Chien-Yu Chen
#t2012
#cBioinformatics
#index3364350
#% 
#!
  
#*Metab2MeSH: annotating compounds with medical subject headings.
#@Maureen A. Sartor,Alexander S. Ade,Zach Wright,David J. States,Gilbert S. Omenn,Brian D. Athey,Alla Karnovsky
#t2012
#cBioinformatics
#index3364194
#% 
#!
  
#*Trading Running Time for Memory in Phylogenetic Likelihood Computations.
#@Fernando Izquierdo-Carrasco,Julien Gagneur,Alexandros Stamatakis
#t2012
#cBioinformatics
#index3434150
#% 
#!
  
#*Pycoevol - A Python Workflow to Study Protein-protein Coevolution.
#@Fábio Madeira,Ludwig Krippahl
#t2012
#cBioinformatics
#index3434229
#% 
#!
  
#*Forests of Latent Tree Models for the Detection of Genetic Associations.
#@Christine Sinoquet,Raphaël Mourad,Philippe Leray
#t2012
#cBioinformatics
#index3434285
#% 
#!
  
#*Predicting New Human Drug Targets by using Feature Selection Techniques.
#@Eduardo Campos dos Santos,Braulio Roberto Gonçalves Marinho Couto,Marcos A. dos Santos,Julio Cesar Dias Lopes
#t2012
#cBioinformatics
#index3434231
#% 
#!
  
#*Improvements to a Multiple Protein Sequence Alignment Tool.
#@André Atanasio M. Almeida,Zanoni Dias
#t2012
#cBioinformatics
#index3434173
#% 
#!
  
#*A Novel Gaussian Fitting Approach for 2D Gel Electrophoresis Saturated Protein Spots.
#@Massimo Natale,Alfonso Caiazzo,Enrico M. Bucci,Elisa Ficarra
#t2012
#cBioinformatics
#index3434175
#% 
#!
  
#*Application of Genome Linguistic Approaches for Identification of Genomic Island in Bacterial Genomes and Tracking down their Origins - Genome Linguistics to Visualize Horizontal Gene Exchange.
#@Oliver Bezuidt,Kingdom Mncube,Oleg N. Reva
#t2012
#cBioinformatics
#index3434167
#% 
#!
  
#*Statistical Mechanics of Proteins in the Random Coil State.
#@Cigdem Sevim Bayrak,Burak Erman
#t2012
#cBioinformatics
#index3434160
#% 
#!
  
#*Building Today the Future Cadre of Informatics-oriented Physicians - Lessons from a New Biomedical Informatics Curriculum for Medical Doctors.
#@Ronen Tal-Botzer,Rachel S. Levy-Drummer,Gidi Rechavi,Ron Unger
#t2012
#cBioinformatics
#index3434262
#% 
#!
  
#*Characterization of Coarse Grain Molecular Dynamic Simulation Performance on Graphic Processing Unit Architectures.
#@Ardita Shkurti,Andrea Acquaviva,Elisa Ficarra,Mario Orsi,Enrico Macii
#t2012
#cBioinformatics
#index3434247
#% 
#!
  
#*Numerical Analysis of Image based High Throughput Zebrafish Infection Screens - Matching Meaning with Data.
#@Alexander E. Nezhinsky,Esther Stoop,Astrid van der Sar,Fons J. Verbeek
#t2012
#cBioinformatics
#index3434174
#% 
#!
  
#*Universal k-NN (UNN) Classification of Cell Images using Histograms of DoG Coefficients.
#@Paolo Piro,Wafa Bel Haj Ali,Lydie Crescence,Oumelkheir Ferhat,Jacques Darcourt,Thierry Pourcher,Michel Barlaud
#t2012
#cBioinformatics
#index3434256
#% 
#!
  
#*Abstractions for Scaling eScience Applications to Distributed Computing Environments - A StratUm Integration Case Study in Molecular Systems Biology.
#@Per-Olov Östberg,Andreas Hellander,Brian Drawert,Erik Elmroth,Sverker Holmgren,Linda Petzold
#t2012
#cBioinformatics
#index3434193
#% 
#!
  
#*Haplotype-based Classifiers to Predict Individual Susceptibility to Complex Diseases - An Example for Multiple Sclerosis.
#@María M. Abad-Grau,Nuria Medina-Medina,Andrés R. Masegosa,Serafín Moral
#t2012
#cBioinformatics
#index3434228
#% 
#!
  
#*A n2 RNA Secondary Structure Prediction Algorithm.
#@Markus E. Nebel,Anika Scheid
#t2012
#cBioinformatics
#index3434151
#% 
#!
  
#*Landscaping the Framework of Bio Research Project - Generation of the 3D Atlas for Drug Target Discovery.
#@Byung-Cheol Kim,Sunghoon Kim
#t2012
#cBioinformatics
#index3434202
#% 
#!
  
#*Wrapper and Filter Metrics for PSO-based Class Balance Applied to Protein Subcellular Localization.
#@S. Garcia López,J. A. Jaramillo-Garzón,J. C. Higuita-Vásquez,C. G. Castellanos-Domínguez
#t2012
#cBioinformatics
#index3434168
#% 
#!
  
#*cswHMM: A Novel Context Switching Hidden Markov Model for Biological Sequence Analysis.
#@Vojtech Bystrý,Matej Lexa
#t2012
#cBioinformatics
#index3434210
#% 
#!
  
#*MASon: Million Alignments in Seconds - A Platform Independent Pairwise Sequence Alignment Library for next Generation Sequencing Data.
#@Philipp Rescheneder,Arndt von Haeseler,Fritz J. Sedlazeck
#t2012
#cBioinformatics
#index3434197
#% 
#!
  
#*Appearance based Disease Recognition of Human Brains.
#@Gopi Chand Nutakki,Leyla Zhuhadar,Robert Wyatt
#t2012
#cBioinformatics
#index3434253
#% 
#!
  
#*Computation of the Normalized Compression Distance of DNA Sequences using a Mixture of Finite-context Models.
#@Diogo Pratas,Armando J. Pinho,Sara P. Garcia
#t2012
#cBioinformatics
#index3434207
#% 
#!
  
#*Automated Detection of Interphase and Metaphase Nuclei in the FISH Images.
#@Jan Schier,Bohumil Kovár,Eduard Kocárek
#t2012
#cBioinformatics
#index3434265
#% 
#!
  
#*A Deterministic Model of Bone Marrow with Homeostatic Properties and with Steady Production of Differentiated Cells.
#@Manish P. Kurhekar,Umesh A. Deshpande
#t2012
#cBioinformatics
#index3434276
#% 
#!
  
#*A Memetic Algorithm for Protein Structure Prediction based on the 2D Triangular Lattice Model.
#@Jyh-Jong Tsay,Shih-Chieh Su
#t2012
#cBioinformatics
#index3434219
#% 
#!
  
#*eBiomics - A Website Promoting Good Practices and Specific Methods for using Bioinformatics Resources.
#@Frédérique Lisacek,Patrick Koks,Pascale Berthault,Grégoire Rossier,Guy Bottu,Jacques van Helden,Jean Sylvestre,Jean-Pierre Kraehenbuhl,Jack A. M. Leunissen
#t2012
#cBioinformatics
#index3434144
#% 
#!
  
#*Bridging the Gap between Design and Reality - A Dual Evolutionary Strategy for the Design of Synthetic Genetic Circuits.
#@Jennifer Hallinan,S. Park,Anil Wipat
#t2012
#cBioinformatics
#index3434154
#% 
#!
  
#*3D Visualization of Haplotype Risk Maps.
#@Sergio Torres-Sánchez,Manuel García Sánchez,Germán Arroyo,Nuria Medina-Medina,Rosana Montes-Soldado,Francisco Soler-Martínez,María M. Abad-Grau
#t2012
#cBioinformatics
#index3434198
#% 
#!
  
#*PubMed Dataset: A Java Library for Automatic Construction of Evaluation Datasets.
#@Kirill Lassounski,Sahudy Montenegro González,Annabell Del Real Tamariz,Gabriel Lima de Oliveira
#t2012
#cBioinformatics
#index3434245
#% 
#!
  
#*Integrating Pathway Enrichment and Gene Network Analysis Provides Accurate Disease Classification.
#@Maysson Al-Haj Ibrahim,Sabah Jassim,Michael A. Cawthorne,Kenneth Langlands
#t2012
#cBioinformatics
#index3434146
#% 
#!
  
#*Laser Doppler Flowmeters Prototypes Validation using Monte Carlo Simulations.
#@Edite Figueiras,Rita Campos,Ricardo Oliveira,Luis F. Requicha Ferreira,Frits de Mul,Anne Humeau-Heurtier
#t2012
#cBioinformatics
#index3434141
#% 
#!
  
#*Bayesian Network Analysis of Relationships between Nucleosome Dynamics and Transcriptional Regulatory Factors.
#@Bich Hai Ho,Ngoc Tu Le,Tu Bao Ho
#t2012
#cBioinformatics
#index3434274
#% 
#!
  
#*Introducing Data Provenance and Error Handling for NGS Workflows within the MOLGENIS Computational Framework.
#@Heorhiy Byelas,Martijn Dijkstra,Morris A. Swertz
#t2012
#cBioinformatics
#index3434183
#% 
#!
  
#*BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1 - 4 February, 2012.
#@Jan Schier,Carlos Manuel B. A. Correia,Ana L. N. Fred,Hugo Gamboa
#t2012
#cBioinformatics
#index3434191
#% 
#!
  
#*Performance Study of Parallel Hybrid Multiple Pattern Matching Algorithms for Biological Sequences.
#@Charalampos S. Kouzinopoulos,Panagiotis D. Michailidis,Konstantinos G. Margaritis
#t2012
#cBioinformatics
#index3434142
#% 
#!
  
#*Inference of Gene Regulatory Networks by Extended Kalman Filtering using Gene Expression Time Series Data.
#@Ramouna Fouladi,Emad Fatemizadeh,S. Shahriar Arab
#t2012
#cBioinformatics
#index3434238
#% 
#!
  
#*Dual-energy X-ray Absorptiometry as an Indicator for Fragility Fracture Risks of the Femoral Neck.
#@Alexander Tsouknidas,Nikolaos Michailidis,Kleovoulos Anagnostidis,Antonios Lontos
#t2012
#cBioinformatics
#index3434348
#% 
#!
  
#*Computational Predictions for the Nucleation Mass and Lag times Involved in Aβ42 Peptide Aggregation.
#@Preetam Ghosh,Bhaswati Datta,Vijayaraghavan Rangachari
#t2012
#cBioinformatics
#index3434295
#% 
#!
  
#*Prediction of Chimeric Protein Fold.
#@Ruben Acuña,Zoé Lacroix,Fayez Hadji,Jacques Chomilier,Nikolaos Papandreou
#t2012
#cBioinformatics
#index3434313
#% 
#!
  
#*Efficient Path Kernels for Reaction Function Prediction.
#@Markus Heinonen,Niko Välimäki,Veli Mäkinen,Juho Rousu
#t2012
#cBioinformatics
#index3434361
#% 
#!
  
#*Semi-supervised Learning of Alternatively Spliced Exons using Expectation Maximization Type Approaches.
#@Ana Stanescu,Doina Caragea
#t2012
#cBioinformatics
#index3434334
#% 
#!
  
#*How to Deal with Small Open Reading Frames?.
#@Malgorzata Wanczyk,Pawel Blazej,Pawel Mackiewicz,Stanislaw Cebrat
#t2012
#cBioinformatics
#index3434305
#% 
#!
  
#*Prediction of Protein Interactions on HIV-1-Human PPI Data using a Novel Closure-based Integrated Approach.
#@Kartick Chandra Mondal,Nicolas Pasquier,Anirban Mukhopadhyay,Célia da Costa Pereira,Ujjwal Maulik,Andrea Tettamanzi
#t2012
#cBioinformatics
#index3434303
#% 
#!
  
#*Exit Polls - Instant Feedback from Teaching Events and Conference Talks.
#@Kristian Rother
#t2012
#cBioinformatics
#index3434387
#% 
#!
  
#*A Novel Analysis Flow for Fused Transcripts Discovery from Paired-end RNA-Seq Data.
#@Francesco Abate,Giulia Paciello,Andrea Acquaviva,Elisa Ficarra,Alberto Ferrarini,Massimo Delledonne,Enrico Macii
#t2012
#cBioinformatics
#index3434417
#% 
#!
  
#*Study of Protein Structure Alignment Problem in Parameterized Computation.
#@Cody Ashby,Kun Wang,Carole L. Cramer,Xiuzhen Huang
#t2012
#cBioinformatics
#index3434425
#% 
#!
  
#*A Generalized Hidden Markov Model for Prediction of Cis-regulatory Modules in Eukaryote Genomes and Description of Their Internal Structure.
#@Anna A. Nilulova,Alexander V. Favorov,Vsevolod Makeev,Andrey A. Mironov
#t2012
#cBioinformatics
#index3434435
#% 
#!
  
#*Prediction of Significant Cruciform Structures from Sequence in Topologically Constrained DNA - A Probabilistic Modelling Approach.
#@Matej Lexa,Lucie Navrátilová,Karel Nejedlý,Marie Brázdová
#t2012
#cBioinformatics
#index3434339
#% 
#!
  
#*Automated Regulon Content Prediction and Estimation of PWM Quality.
#@Elena D. Stavrovskaya,Andrey A. Mironov,Dmitry A. Rodionov,Inna Dubchak,Pavel S. Novichkov
#t2012
#cBioinformatics
#index3434366
#% 
#!
  
#*Genome Halving by Block Interchange.
#@Antoine Thomas,Aïda Ouangraoua,Jean-Stéphane Varré
#t2012
#cBioinformatics
#index3434341
#% 
#!
  
#*A Vaccination Control Law based on Feedback Linearization Techniques for SEIR Epidemic Models.
#@Santiago Alonso-Quesada,Manuel de la Sen,Asier Ibeas
#t2012
#cBioinformatics
#index3434431
#% 
#!
  
#*A Taste of Yeast Mobilomics.
#@Giulia Menconi,Giovanni Battaglia,Roberto Grossi,Nadia Pisanti,Roberto Marangoni
#t2012
#cBioinformatics
#index3434386
#% 
#!
  
#*Benefits of Genetic Algorithm Feature-based Resampling for Protein Structure Prediction.
#@Trent Higgs,Bela Stantic,Tamjidul Hoque,Abdul Sattar
#t2012
#cBioinformatics
#index3434384
#% 
#!
  
#*Identification of Hiv-1 Dynamics - Estimating the Noise Model, Constant and Time-varying Parameters of Long-term Clinical Data.
#@András Hartmann,Susana Vinga,João M. Lemos
#t2012
#cBioinformatics
#index3434340
#% 
#!
  
#*Differential Evolution to Multi-objective Protein Structure Prediction.
#@Sandra M. Venske,Richard A. Gonçalves,Myriam Regattieri Delgado
#t2012
#cBioinformatics
#index3434343
#% 
#!
  
#*Analysis of Correlation Structures in Renal Cell Carcinoma Patient Data.
#@Italo Zoppis,Massimiliano Borsani,Erica Gianazza,Clizia Chinello,Francesco Rocco,Giancarlo Albo,André M. Deelder,Yuri E. M. van der Burgt,Fulvio Magni,Marco Antoniotti,Giancarlo Mauri
#t2012
#cBioinformatics
#index3434399
#% 
#!
  
#*An Efficient Parallel GPU Evaluation of Small Angle X-ray Scattering Profiles.
#@Lubomir D. Antonov,Christian Andreetta,Thomas Hamelryck
#t2012
#cBioinformatics
#index3434378
#% 
#!
  
#*Matching Two-dimensional Gel Electrophoresis' Spots.
#@António dos Anjos,Bjarne Kjær Ersbøll,Faroq Al-Tam,Hamid Reza Shahbazkia
#t2012
#cBioinformatics
#index3434350
#% 
#!
  
#*A Web-based Introduction to Bioinformatics - Epistemological Beliefs in Bioinformatics.
#@Gerald Lirk,Peter Kulczycki,Stefan Winkler,Jörg Zumbach
#t2012
#cBioinformatics
#index3434362
#% 
#!
  
#*Simulation of Bacterial Genome Evolution under Replicational Mutational Pressures.
#@Pawel Blazej,Pawel Mackiewicz,Stanislaw Cebrat
#t2012
#cBioinformatics
#index3434355
#% 
#!
  
#*Approach to Enable an Automatic Pre-processing of qRT-PCR - Analysis.
#@Marco Franke,Klaus-Dieter Thoben,Rainer Söller
#t2012
#cBioinformatics
#index3434434
#% 
#!
  
#*Multi-level Dynamic Modeling in Biological Systems - Application of Hybrid Petri Nets to Network Simulation.
#@Rafael S. Costa,Daniel Machado,A. R. Neves,Susana Vinga
#t2012
#cBioinformatics
#index3434441
#% 
#!
  
#*Fuzzy Concept Lattice-based Approach for Reactive Motifs Discovery.
#@Thanapat Kangkachit,Kitsana Waiyamai
#t2012
#cBioinformatics
#index3434370
#% 
#!
  
#*easyRNASeq: a bioconductor package for processing RNA-Seq data.
#@Nicolas Delhomme,Ismaël Padioleau,Eileen E. Furlong,Lars M. Steinmetz
#t2012
#cBioinformatics
#index3456426
#% 
#!
  
#*Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics.
#@Yu-Wei Wu,Mina Rho,Thomas G. Doak,Yuzhen Ye
#t2012
#cBioinformatics
#index3456448
#% 
#!
  
#*Imaging, quantification and visualization of spatio-temporal patterning in mESC colonies under different culture conditions.
#@Nico Scherf,M. Herberg,Konstantin Thierbach,T. Zerjatke,T. Kalkan,P. Humphreys,A. Smith,Ingmar Glauche,Ingo Roeder
#t2012
#cBioinformatics
#index3456414
#% 
#!
  
#*A novel variational Bayes multiple locus -statistic for genome-wide association studies with Bayesian model averaging.
#@Benjamin A. Logsdon,Cara L. Carty,Alexander P. Reiner,James Y. Dai,Charles L. Kooperberg
#t2012
#cBioinformatics
#index3456283
#% 
#!
  
#*High-throughput analysis of epistasis in genome-wide association studies with BiForce.
#@Attila Gyenesei,Jonathan Moody,Colin A. M. Semple,Chris S. Haley,Wenhua Wei
#t2012
#cBioinformatics
#index3456334
#% 
#!
  
#*A bioimage informatics approach to automatically extract complex fungal networks.
#@Boguslaw Obara,Vicente Grau,Mark D. Fricker
#t2012
#cBioinformatics
#index3456347
#% 
#!
  
#*Improved gap size estimation for scaffolding algorithms.
#@Kristoffer Sahlin,Nathaniel Street,Joakim Lundeberg,Lars Arvestad
#t2012
#cBioinformatics
#index3456476
#% 
#!
  
#*A structure-based protocol for learning the family-specific mechanisms of membrane-binding domains.
#@Morten Källberg,Nitin Bhardwaj,Robert E. Langlois,Hui Lu
#t2012
#cBioinformatics
#index3456362
#% 
#!
  
#*DELIMINATE - a fast and efficient method for loss-less compression of genomic sequences: Sequence analysis.
#@Monzoorul Haque Mohammed,Anirban Dutta,Tungadri Bose,Sudha Chadaram,Sharmila S. Mande
#t2012
#cBioinformatics
#index3456257
#% 
#!
  
#*MolBioLib: a C++11 framework for rapid development and deployment of bioinformatics tasks.
#@Toshiro K. Ohsumi,Mark L. Borowsky
#t2012
#cBioinformatics
#index3456472
#% 
#!
  
#*Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score.
#@Hayan Lee,Michael C. Schatz
#t2012
#cBioinformatics
#index3456328
#% 
#!
  
#*Statistical analysis of glycosylation profiles to compare tissue type and inflammatory disease state.
#@Catherine A. Hayes,Szilard Nemes,Niclas G. Karlsson
#t2012
#cBioinformatics
#index3456255
#% 
#!
  
#*Fast computation for genome-wide association studies using boosted one-step statistics.
#@Arend Voorman,Ken Rice,Thomas Lumley
#t2012
#cBioinformatics
#index3456234
#% 
#!
  
#*GeneTalk: an expert exchange platform for assessing rare sequence variants in personal genomes.
#@Tom Kamphans,Peter Krawitz
#t2012
#cBioinformatics
#index3456356
#% 
#!
  
#*RazerS 3: Faster, fully sensitive read mapping.
#@David Weese,Manuel Holtgrewe,Knut Reinert
#t2012
#cBioinformatics
#index3456357
#% 
#!
  
#*BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events.
#@Martin Gerner,Farzaneh Sarafraz,Casey M. Bergman,Goran Nenadic
#t2012
#cBioinformatics
#index3456463
#% 
#!
  
#*An empirical Bayes mixture model for SNP detection in pooled sequencing data.
#@Baiyu Zhou
#t2012
#cBioinformatics
#index3456449
#% 
#!
  
#*PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis.
#@Sam Ng,Eric A. Collisson,Artem Sokolov,Theodore Goldstein,Abel Gonzalez-Perez,Nuria Lopez-Bigas,Christopher Benz,David Haussler,Joshua M. Stuart
#t2012
#cBioinformatics
#index3456319
#% 
#!
  
#*Identifying mechanistic similarities in drug responses.
#@Chen Zhao,Jianping Hua,Michael L. Bittner,Ivan Ivanov,Edward R. Dougherty
#t2012
#cBioinformatics
#index3456270
#% 
#!
  
#*Integrating literature-constrained and data-driven inference of signalling networks.
#@Federica Eduati,Javier De Las Rivas,Barbara Di Camillo,Gianna Toffolo,Julio Saez-Rodriguez
#t2012
#cBioinformatics
#index3456429
#% 
#!
  
#*Comprehensive estimation of input signals and dynamics in biochemical reaction networks.
#@M. Schelker,A. Raue,Jens Timmer,C. Kreutz
#t2012
#cBioinformatics
#index3456436
#% 
#!
  
#*SORTALLER: predicting allergens using substantially optimized algorithm on allergen family featured peptides.
#@Lida Zhang,Yuyi Huang,Zehong Zou,Ying He,Ximo Chen,Ailin Tao
#t2012
#cBioinformatics
#index3456329
#% 
#!
  
#*Genomic context analysis reveals dense interaction network between vertebrate ultraconserved non-coding elements.
#@Slavica Dimitrieva,Philipp Bucher
#t2012
#cBioinformatics
#index3456408
#% 
#!
  
#*Trajectory-oriented Bayesian experiment design versus Fisher A-optimal design: an in depth comparison study.
#@Patrick Weber,Andrei Kramer,Clemens Dingler,Nicole Radde
#t2012
#cBioinformatics
#index3456447
#% 
#!
  
#*An exome sequencing pipeline for identifying and genotyping common CNVs associated with disease with application to psoriasis.
#@Lachlan James M. Coin,Dandan Cao,Jingjing Ren,Xianbo Zuo,Liangdan Sun,Sen Yang,Xuejun Zhang,Yong Cui,Yingrui Li,Xin Jin,Jun Wang
#t2012
#cBioinformatics
#index3456343
#% 
#!
  
#*AraPath: a knowledgebase for pathway analysis in Arabidopsis.
#@Liming Lai,Arthur Liberzon,Jason Hennessey,Gaixin Jiang,Jianli Qi,Jill P. Mesirov,Steven X. Ge
#t2012
#cBioinformatics
#index3456293
#% 
#!
  
#*BIDDSAT: visualizing the content of biodiversity data publishers in the Global Biodiversity Information Facility network.
#@Javier Otegui,Arturo H. Ariño
#t2012
#cBioinformatics
#index3456306
#% 
#!
  
#*MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis.
#@Sudhir Kumar,Glen Stecher,Daniel Peterson,Koichiro Tamura
#t2012
#cBioinformatics
#index3456421
#% 
#!
  
#*Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks.
#@Abdelhalim Larhlimi,Georg Basler,Sergio Grimbs,Joachim Selbig,Zoran Nikoloski
#t2012
#cBioinformatics
#index3456280
#% 
#!
  
#*EFICAz: application of a high-precision enzyme function predictor to 396 proteomes.
#@Narendra Kumar,Jeffrey Skolnick
#t2012
#cBioinformatics
#index3456256
#% 
#!
  
#*CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data.
#@Michael D. Linderman,Zach Bjornson,Erin F. Simonds,Peng Qiu,Robert V. Bruggner,Ketaki Sheode,Teresa H. Meng,Sylvia K. Plevritis,Garry P. Nolan
#t2012
#cBioinformatics
#index3456273
#% 
#!
  
#*IRView: a database and viewer for protein interacting regions.
#@Shigeo Fujimori,Naoya Hirai,Kazuyo Masuoka,Tomohiro Oshikubo,Tatsuhiro Yamashita,Takanori Washio,Ayumu Saito,Masao Nagasaki,Satoru Miyano,Etsuko Miyamoto-Sato
#t2012
#cBioinformatics
#index3456266
#% 
#!
  
#*Accurate estimation of short read mapping quality for next-generation genome sequencing.
#@Matthew Ruffalo,Mehmet Koyutürk,Soumya Ray,Thomas LaFramboise
#t2012
#cBioinformatics
#index3456231
#% 
#!
  
#*RSeQC: quality control of RNA-seq experiments.
#@Liguo Wang,Shengqin Wang,Wei Li
#t2012
#cBioinformatics
#index3456224
#% 
#!
  
#*Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data.
#@Anton Zoubarev,Kelsey M. Hamer,Kiran Keshav,E. Luke McCarthy,Joseph Roy C. Santos,Thea Van Rossum,Cameron McDonald,Adam Hall,Xiang Wan,Raymond Lim,Jesse Gillis,Paul Pavlidis
#t2012
#cBioinformatics
#index3456454
#% 
#!
  
#*Analysis of case-control association studies with known risk variants.
#@Noah Zaitlen,Bogdan Pasaniuc,Nick Patterson,Samuela Pollack,Benjamin Voight,Leif Groop,David Altshuler,Brian E. Henderson,Laurence N. Kolonel,Loic Le Marchand,Kevin Waters,Christopher A. Haiman,Barbara E. Stranger,Emmanouil T. Dermitzakis,Peter Kraft,Alkes L. Price
#t2012
#cBioinformatics
#index3456243
#% 
#!
  
#*Hybrid spatial Gillespie and particle tracking simulation.
#@Michael Klann,Arnab Ganguly,Heinz Koeppl
#t2012
#cBioinformatics
#index3456412
#% 
#!
  
#*A sequence comparison and gene expression data integration add-on for the Pathway Tools software.
#@Peter M. Krempl,Juergen Mairhofer,Gerald Striedner,Gerhard G. Thallinger
#t2012
#cBioinformatics
#index3456399
#% 
#!
  
#*Systematic comparison of RNA-Seq normalization methods using measurement error models.
#@Zhaonan Sun,Yu Zhu
#t2012
#cBioinformatics
#index3456291
#% 
#!
  
#*Robustness and accuracy of functional modules in integrated network analysis.
#@Daniela Beisser,Stefan Brunkhorst,Thomas Dandekar,Gunnar W. Klau,Marcus T. Dittrich,Tobias Müller
#t2012
#cBioinformatics
#index3456382
#% 
#!
  
#*Discriminative local subspaces in gene expression data for effective gene function prediction.
#@Tomas Puelma,Rodrigo A. Gutiérrez,Alvaro Soto
#t2012
#cBioinformatics
#index3456284
#% 
#!
  
#*Paving the future: finding suitable ISMB venues.
#@Burkhard Rost,Terry Gaasterland,Thomas Lengauer,Michal Linial,Scott Markel,B. J. Morrison McKay,Reinhard Schneider,Paul Horton,Janet Kelso
#t2012
#cBioinformatics
#index3456371
#% 
#!
  
#*flowPeaks: a fast unsupervised clustering for flow cytometry data via -means and density peak finding.
#@Yongchao Ge,Stuart C. Sealfon
#t2012
#cBioinformatics
#index3456464
#% 
#!
  
#*NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species.
#@Anat Kreimer,Adi Doron-Faigenboim,Elhanan Borenstein,Shiri Freilich
#t2012
#cBioinformatics
#index3456422
#% 
#!
  
#*VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment.
#@Lukas Habegger,Suganthi Balasubramanian,David Z. Chen,Ekta Khurana,Andrea Sboner,Arif Harmanci,Joel S. Rozowsky,Declan Clarke,Michael Snyder,Mark Gerstein
#t2012
#cBioinformatics
#index3456363
#% 
#!
  
#*CodonLogo: a sequence logo-based viewer for codon patterns.
#@Virag Sharma,David P. Murphy,Gregory Provan,Pavel V. Baranov
#t2012
#cBioinformatics
#index3456389
#% 
#!
  
#*Qualimap: evaluating next-generation sequencing alignment data.
#@Fernando García-Alcalde,Konstantin Okonechnikov,José Carbonell,Luis M. Cruz,Stefan Götz,Sonia Tarazona,Joaquín Dopazo,Thomas F. Meyer,Ana Conesa
#t2012
#cBioinformatics
#index3456437
#% 
#!
  
#*imDEV: a graphical user interface to R multivariate analysis tools in Microsoft Excel.
#@Dmitry Grapov,John W. Newman
#t2012
#cBioinformatics
#index3456290
#% 
#!
  
#*Comments on 'MMFPh: A Maximal Motif Finder for Phosphoproteomics Datasets'.
#@Zengyou He,Haipeng Gong
#t2012
#cBioinformatics
#index3456471
#% 
#!
  
#*MobiDB: a comprehensive database of intrinsic protein disorder annotations.
#@Tomàs Di Domenico,Ian Walsh,Alberto J. M. Martin,Silvio C. E. Tosatto
#t2012
#cBioinformatics
#index3456321
#% 
#!
  
#*ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality.
#@Mate Szalay-Beko,Robin Palotai,Balázs Szappanos,Istvan A. Kovacs,Balázs Papp,Peter Csermely
#t2012
#cBioinformatics
#index3456314
#% 
#!
  
#*RedoxDB - a curated database for experimentally verified protein oxidative modification.
#@Ming-an Sun,Yejun Wang,Han Cheng,Qing Zhang,Wei Ge,Dianjing Guo
#t2012
#cBioinformatics
#index3456264
#% 
#!
  
#*GO-Elite: a flexible solution for pathway and ontology over-representation.
#@Alexander C. Zambon,Stan Gaj,Isaac Ho,Kristina Hanspers,Karen Vranizan,Chris T. A. Evelo,Bruce R. Conklin,Alexander R. Pico,Nathan Salomonis
#t2012
#cBioinformatics
#index3456267
#% 
#!
  
#*Metabolite identification and molecular fingerprint prediction through machine learning.
#@Markus Heinonen,Huibin Shen,Nicola Zamboni,Juho Rousu
#t2012
#cBioinformatics
#index3456233
#% 
#!
  
#*Boosting automatic event extraction from the literature using domain adaptation and coreference resolution.
#@Makoto Miwa,Paul Thompson,Sophia Ananiadou
#t2012
#cBioinformatics
#index3456455
#% 
#!
  
#*Exhaustive database searching for amino acid mutations in proteomes.
#@Doug Hyatt,Chongle Pan
#t2012
#cBioinformatics
#index3456239
#% 
#!
  
#*Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion model.
#@Francesco Abate,Andrea Acquaviva,Giulia Paciello,Carmelo Foti,Elisa Ficarra,Alberto Ferrarini,Massimo Delledonne,Ilaria Iacobucci,Simona Soverini,Giovanni Martinelli,Enrico Macii
#t2012
#cBioinformatics
#index3456225
#% 
#!
  
#*Gene and translation initiation site prediction in metagenomic sequences.
#@Doug Hyatt,Philip F. LoCascio,Loren J. Hauser,Edward C. Uberbacher
#t2012
#cBioinformatics
#index3456470
#% 
#!
  
#*FacPad: Bayesian sparse factor modeling for the inference of pathways responsive to drug treatment.
#@Haisu Ma,Hongyu Zhao
#t2012
#cBioinformatics
#index3456446
#% 
#!
  
#*Intensity quantile estimation and mapping - a novel algorithm for the correction of image non-uniformity bias in HCS data.
#@Ernest Lo,Emmanuelle Soleilhac,Anne Martinez,Laurence Lafanechère,Robert Nadon
#t2012
#cBioinformatics
#index3456230
#% 
#!
  
#*BATMAN - an R package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian model.
#@Jie Hao,William Astle,Maria De Iorio,Timothy M. D. Ebbels
#t2012
#cBioinformatics
#index3456428
#% 
#!
  
#*An approach to describing and analysing bulk biological annotation quality: a case study using UniProtKB.
#@Michael J. Bell,Colin S. Gillespie,Daniel Swan,Phillip Lord
#t2012
#cBioinformatics
#index3456281
#% 
#!
  
#*Boolean approach to signalling pathway modelling in HGF-induced keratinocyte migration.
#@Amit Singh,Juliana M. Nascimento,Silke Kowar,Hauke Busch,Melanie Boerries
#t2012
#cBioinformatics
#index3456475
#% 
#!
  
#*GAPIT: genome association and prediction integrated tool.
#@Alexander E. Lipka,Feng Tian,Qishan Wang,Jason Peiffer,Meng Li,Peter J. Bradbury,Michael A. Gore,Edward S. Buckler,Zhiwu Zhang
#t2012
#cBioinformatics
#index3456304
#% 
#!
  
#*AS-EAST: a functional annotation tool for putative proteins encoded by alternatively spliced transcripts.
#@Masafumi Shionyu,Ken-ichi Takahashi,Mitiko Go
#t2012
#cBioinformatics
#index3456349
#% 
#!
  
#*BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences and its application to the genome.
#@Hiro Takahashi,Anna Takahashi,Satoshi Naito,Hitoshi Onouchi
#t2012
#cBioinformatics
#index3456388
#% 
#!
  
#*CySBML: a Cytoscape plugin for SBML.
#@Matthias König,Andreas Dräger,Hermann-Georg Holzhütter
#t2012
#cBioinformatics
#index3456285
#% 
#!
  
#*Quantifying uniformity of mapped reads.
#@Valerie Hower,Richard Starfield,Adam Roberts,Lior Pachter
#t2012
#cBioinformatics
#index3456272
#% 
#!
  
#*The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets.
#@Matthew B. Stocks,Simon Moxon,Daniel Mapleson,Hugh C. Woolfenden,Irina Mohorianu,Leighton Folkes,Frank Schwach,Tamas Dalmay,Vincent Moulton
#t2012
#cBioinformatics
#index3456416
#% 
#!
  
#*TLM-Tracker: software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies.
#@Johannes Klein,Stefan Leupold,Ilona Biegler,Rebekka Biedendieck,Richard Münch,Dieter Jahn
#t2012
#cBioinformatics
#index3456405
#% 
#!
  
#*Computational prediction of N-linked glycosylation incorporating structural properties and patterns.
#@Gwo-Yu Chuang,Jeffrey C. Boyington,M. Gordon Joyce,Jiang Zhu,Gary J. Nabel,Peter D. Kwong,Ivelin Georgiev
#t2012
#cBioinformatics
#index3456377
#% 
#!
  
#*Response to 'Comments on "MMFPh: A Maximal Motif Finder for Phosphoproteomics Datasets"'.
#@Tuobin Wang,Arminja N. Kettenbach,Scott A. Gerber,Chris Bailey-Kellogg
#t2012
#cBioinformatics
#index3456332
#% 
#!
  
#*Random sampling of elementary flux modes in large-scale metabolic networks.
#@Daniel Machado,Zita Soons,Kiran Raosaheb Patil,Eugénio C. Ferreira,Isabel Rocha
#t2012
#cBioinformatics
#index3456423
#% 
#!
  
#*Fractionation, rearrangement and subgenome dominance.
#@David Sankoff,Chunfang Zheng
#t2012
#cBioinformatics
#index3456365
#% 
#!
  
#*Indel-tolerant read mapping with trinucleotide frequencies using cache-oblivious -trees.
#@Md Pavel Mahmud,John Wiedenhoeft,Alexander Schliep
#t2012
#cBioinformatics
#index3456364
#% 
#!
  
#*Graphlet-based edge clustering reveals pathogen-interacting proteins.
#@Ryan W. Solava,Ryan P. Michaels,Tijana Milenkovic
#t2012
#cBioinformatics
#index3456246
#% 
#!
  
#*PurityEst: estimating purity of human tumor samples using next-generation sequencing data.
#@Xiaoping Su,Li Zhang,Jianping Zhang,Funda Meric-Bernstam,John N. Weinstein
#t2012
#cBioinformatics
#index3456350
#% 
#!
  
#*DAVID-WS: a stateful web service to facilitate gene/protein list analysis.
#@Xiaoli Jiao,Brad T. Sherman,Da Wei Huang,Robert M. Stephens,Michael W. Baseler,H. Clifford Lane,Richard A. Lempicki
#t2012
#cBioinformatics
#index3456303
#% 
#!
  
#*Blockwise HMM computation for large-scale population genomic inference.
#@Joshua S. Paul,Yun S. Song
#t2012
#cBioinformatics
#index3456370
#% 
#!
  
#*Borrowing strength: a likelihood ratio test for related sparse signals.
#@Ernst Wit,David J. Bakewell
#t2012
#cBioinformatics
#index3456398
#% 
#!
  
#*HCS-Analyzer: open source software for high-content screening data correction and analysis.
#@Arnaud Ogier,Thierry Dorval
#t2012
#cBioinformatics
#index3456383
#% 
#!
  
#*Identifying multi-layer gene regulatory modules from multi-dimensional genomic data.
#@Wenyuan Li,Shi-Hua Zhang,Chun-Chi Liu,Xianghong Jasmine Zhou
#t2012
#cBioinformatics
#index3456250
#% 
#!
  
#*MSeasy: unsupervised and untargeted GC-MS data processing.
#@Florence Nicolè,Yann Guitton,Elodie A. Courtois,Sandrine Moja,Laurent Legendre,Martine Hossaert-McKey
#t2012
#cBioinformatics
#index3456474
#% 
#!
  
#*Long read alignment based on maximal exact match seeds.
#@Yongchao Liu,Bertil Schmidt
#t2012
#cBioinformatics
#index3456263
#% 
#!
  
#*SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models.
#@Iain H. Moal,Juan Fernández-Recio
#t2012
#cBioinformatics
#index3456245
#% 
#!
  
#*FACETS: multi-faceted functional decomposition of protein interaction networks.
#@Boon-Siew Seah,Sourav S. Bhowmick,Charles Forbes Dewey Jr.
#t2012
#cBioinformatics
#index3456465
#% 
#!
  
#*Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features.
#@Jaume Bacardit,Pawel Widera,Alfonso E. Márquez Chamorro,Federico Divina,Jesús S. Aguilar-Ruiz,Natalio Krasnogor
#t2012
#cBioinformatics
#index3456331
#% 
#!
  
#*VegaMC: a R/bioconductor package for fast downstream analysis of large array comparative genomic hybridization datasets.
#@Sandro Morganella,Michele Ceccarelli
#t2012
#cBioinformatics
#index3456222
#% 
#!
  
#*CPSS: a computational platform for the analysis of small RNA deep sequencing data.
#@Yuanwei Zhang,Bo Xu,Yifan Yang,Rongjun Ban,Huan Zhang,Xiaohua Jiang,Howard J. Cooke,Yu Xue,Qinghua Shi
#t2012
#cBioinformatics
#index3456322
#% 
#!
  
#*Genome-scale analysis of interaction dynamics reveals organization of biological networks.
#@Jishnu Das,Jaaved Mohammed,Haiyuan Yu
#t2012
#cBioinformatics
#index3456410
#% 
#!
  
#*Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees.
#@Maureen Stolzer,Han Lai,Minli Xu,Deepa Sathaye,Benjamin Vernot,Dannie Durand
#t2012
#cBioinformatics
#index3456469
#% 
#!
  
#*MolClass: a web portal to interrogate diverse small molecule screen datasets with different computational models.
#@Jan Wildenhain,Nicholas FitzGerald,Mike Tyers
#t2012
#cBioinformatics
#index3456424
#% 
#!
  
#*Efficient sampling for Bayesian inference of conjunctive Bayesian networks.
#@Thomas Sakoparnig,Niko Beerenwinkel
#t2012
#cBioinformatics
#index3456345
#% 
#!
  
#*dbSNO: a database of cysteine -nitrosylation.
#@Tzong-Yi Lee,Yi-Ju Chen,Cheng-Tsung Lu,Wei-Chieh Ching,Yu-Chuan Teng,Hsien-Da Huang,Yu-Ju Chen
#t2012
#cBioinformatics
#index3456466
#% 
#!
  
#*Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs.
#@Christopher T. Saunders,Wendy S. W. Wong,Sajani Swamy,Jennifer Becq,Lisa J. Murray,R. Keira Cheetham
#t2012
#cBioinformatics
#index3456415
#% 
#!
  
#*DoGSiteScorer: a web server for automatic binding site prediction, analysis and druggability assessment.
#@Andrea Volkamer,Daniel Kuhn,Friedrich Rippmann,Matthias Rarey
#t2012
#cBioinformatics
#index3456380
#% 
#!
  
#*iFad: an integrative factor analysis model for drug-pathway association inference.
#@Haisu Ma,Hongyu Zhao
#t2012
#cBioinformatics
#index3456302
#% 
#!
  
#*Protein domain recurrence and order can enhance prediction of protein functions.
#@Mario Abdel Messih,Meghana Chitale,Vladimir B. Bajic,Daisuke Kihara,Xin Gao
#t2012
#cBioinformatics
#index3456445
#% 
#!
  
#*Topology of functional networks predicts physical binding of proteins.
#@Ömer Sinan Saraç,Vera Pancaldi,Jürg Bähler,Andreas Beyer
#t2012
#cBioinformatics
#index3456438
#% 
#!
  
#*Cell-Dock: high-performance protein-protein docking.
#@Carles Pons,Daniel Jiménez-González,Cecilia González-Alvarez,Harald Servat,Daniel Cabrera-Benitez,Xavier Aguilar,Juan Fernández-Recio
#t2012
#cBioinformatics
#index3456251
#% 
#!
  
#*An integrated open framework for thermodynamics of reactions that combines accuracy and coverage.
#@Elad Noor,Arren Bar-Even,Avi I. Flamholz,Yaniv Lubling,Dan Davidi,Ron Milo
#t2012
#cBioinformatics
#index3456406
#% 
#!
  
#*regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions.
#@Mingxiang Teng,Shoji Ichikawa,Leah R. Padgett,Yadong Wang,Matthew E. Mort,David N. Cooper,Daniel L. Koller,Tatiana Foroud,Howard J. Edenberg,Michael J. Econs,Yunlong Liu
#t2012
#cBioinformatics
#index3456309
#% 
#!
  
#*MetaCluster 5.0: a two-round binning approach for metagenomic data for low-abundance species in a noisy sample.
#@Yi Wang,Henry C. M. Leung,Siu-Ming Yiu,Francis Y. L. Chin
#t2012
#cBioinformatics
#index3456316
#% 
#!
  
#*Nebula - a web-server for advanced ChIP-seq data analysis.
#@Valentina Boeva,Alban Lermine,Camille Barette,Christel Guillouf,Emmanuel Barillot
#t2012
#cBioinformatics
#index3456452
#% 
#!
  
#*A novel approach for resolving differences in single-cell gene expression patterns from zygote to blastocyst.
#@Florian Buettner,Fabian J. Theis
#t2012
#cBioinformatics
#index3456240
#% 
#!
  
#*: a pipeline for small RNA-seq data analysis.
#@Vikas Gupta,Katharina Markmann,Christian N. S. Pedersen,Jens Stougaard,Stig U. Andersen
#t2012
#cBioinformatics
#index3456296
#% 
#!
  
#*Identifying differentially expressed transcripts from RNA-seq data with biological variation.
#@Peter Glaus,Antti Honkela,Magnus Rattray
#t2012
#cBioinformatics
#index3456397
#% 
#!
  
#*BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.
#@Ken Chen,John W. Wallis,Cyriac Kandoth,Joelle M. Kalicki-Veizer,Karen L. Mungall,Andrew J. Mungall,Steven J. M. Jones,Marco A. Marra,Timothy J. Ley,Elaine R. Mardis,Richard K. Wilson,John N. Weinstein,Li Ding
#t2012
#cBioinformatics
#index3456431
#% 
#!
  
#*ReLiance: a machine learning and literature-based prioritization of receptor - ligand pairings.
#@Ernesto Iacucci,Léon-Charles Tranchevent,Dusan Popovic,Georgios A. Pavlopoulos,Bart De Moor,Reinhard Schneider,Yves Moreau
#t2012
#cBioinformatics
#index3456247
#% 
#!
  
#*Exploring single-sample SNP and INDEL calling with whole-genome assembly.
#@Heng Li
#t2012
#cBioinformatics
#index3456351
#% 
#!
  
#*Snakemake - a scalable bioinformatics workflow engine.
#@Johannes Köster,Sven Rahmann
#t2012
#cBioinformatics
#index3456237
#% 
#!
  
#*Bayesian sampling of evolutionarily conserved RNA secondary structures with pseudoknots.
#@Gero Doose,Dirk Metzler
#t2012
#cBioinformatics
#index3456381
#% 
#!
  
#*CNVRuler: a copy number variation-based case-control association analysis tool.
#@Ji-Hong Kim,Hae-Jin Hu,Seon-Hee Yim,Joon Seol Bae,Seon-Young Kim,Yeun-Jun Chung
#t2012
#cBioinformatics
#index3456297
#% 
#!
  
#*MicrobeDB: a locally maintainable database of microbial genomic sequences.
#@Morgan G. I. Langille,Matthew R. Laird,William W. L. Hsiao,Terry A. Chiu,Jonathan A. Eisen,Fiona S. L. Brinkman
#t2012
#cBioinformatics
#index3456418
#% 
#!
  
#*Multi-scale computational modeling of developmental biology.
#@Yaki Setty
#t2012
#cBioinformatics
#index3456262
#% 
#!
  
#*Bendix: intuitive helix geometry analysis and abstraction.
#@Anna Caroline E. Dahl,Matthieu Chavent,Mark S. P. Sansom
#t2012
#cBioinformatics
#index3456330
#% 
#!
  
#*mcaGUI: microbial community analysis R-Graphical User Interface (GUI).
#@Wade K. Copeland,Vandhana Krishnan,Daniel Beck,Matt Settles,James A. Foster,Kyu-Chul Cho,Mitch Day,Roxana Hickey,Ursel M. E. Schütte,Xia Zhou,Christopher J. Williams,Larry J. Forney,Zaid Abdo
#t2012
#cBioinformatics
#index3456337
#% 
#!
  
#*An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection.
#@Xingbin Wang,Dongwan D. Kang,Kui Shen,Chi Song,Shuya Lu,Lun-Ching Chang,Serena G. Liao,Zhiguang Huo,Shaowu Tang,Ying Ding,Naftali Kaminski,Etienne Sibille,Yan Lin,Jia Li,George C. Tseng
#t2012
#cBioinformatics
#index3456366
#% 
#!
  
#*gSearch: a fast and flexible general search tool for whole-genome sequencing.
#@Taemin Song,Kyu Baek Hwang,Michael Hsing,Kyungjoon Lee,Justin Bohn,Sek Won Kong
#t2012
#cBioinformatics
#index3456391
#% 
#!
  
#*Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data.
#@Benedikt Zacher,Khalid Abnaof,Stephan Gade,Erfan Younesi,Achim Tresch,Holger Fröhlich
#t2012
#cBioinformatics
#index3456274
#% 
#!
  
#*BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms.
#@Olivier Sosnowski,Alain Charcosset,Johann Joets
#t2012
#cBioinformatics
#index3456441
#% 
#!
  
#*TRFolder-W: a web server for telomerase RNA structure prediction in yeast genomes.
#@Dong Zhang,Xingran Xue,Russell L. Malmberg,Liming Cai
#t2012
#cBioinformatics
#index3456323
#% 
#!
  
#*Application of survival analysis methodology to the quantitative analysis of LC-MS proteomics data.
#@Carmen D. Tekwe,Raymond J. Carroll,Alan R. Dabney
#t2012
#cBioinformatics
#index3456223
#% 
#!
  
#*Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human.
#@Barbara Piasecka,Marc Robinson-Rechavi,Sven Bergmann
#t2012
#cBioinformatics
#index3456459
#% 
#!
  
#*AutoBind: automatic extraction of protein-ligand-binding affinity data from biological literature.
#@Darby Tien-Hao Chang,Chao-Hsuan Ke,Jung-Hsin Lin,Jung-Hsien Chiang
#t2012
#cBioinformatics
#index3456369
#% 
#!
  
#*LocTree2 predicts localization for all domains of life.
#@Tatyana Goldberg,Tobias Hamp,Burkhard Rost
#t2012
#cBioinformatics
#index3456312
#% 
#!
  
#*GEMSiRV: a software platform for GEnome-scale metabolic model simulation, reconstruction and visualization.
#@Yu-Chieh Liao,Ming-Hsin Tsai,Feng-Chi Chen,Chao A. Hsiung
#t2012
#cBioinformatics
#index3456340
#% 
#!
  
#*Positive-unlabeled learning for disease gene identification.
#@Peng Yang,Xiaoli Li,Jian-Ping Mei,Chee-Keong Kwoh,See-Kiong Ng
#t2012
#cBioinformatics
#index3456453
#% 
#!
  
#*BioJava: an open-source framework for bioinformatics in 2012.
#@Andreas Prlic,Andrew Yates,Spencer Bliven,Peter W. Rose,Julius Jacobsen,Peter V. Troshin,Mark Chapman,Jianjiong Gao,Chuan Hock Koh,Sylvain Foisy,Richard R. C. Holland,Gediminas Rimsa,Michael L. Heuer,Hannes Brandstätter-Müller,Philip E. Bourne,Scooter Willis
#t2012
#cBioinformatics
#index3456232
#% 
#!
  
#*A holistic approach to predict functional sites in protein structures.
#@Joan Segura,Pamela F. Jones,Narcis Fernandez-Fuentes
#t2012
#cBioinformatics
#index3456301
#% 
#!
  
#*An accurate paired sample test for count data.
#@Thang V. Pham,Connie R. Jimenez
#t2012
#cBioinformatics
#index3456430
#% 
#!
  
#*Optimal simultaneous superpositioning of multiple structures with missing data.
#@Douglas L. Theobald,Phillip A. Steindel
#t2012
#cBioinformatics
#index3456425
#% 
#!
  
#*easyFRAP: an interactive, easy-to-use tool for qualitative and quantitative analysis of FRAP data.
#@Maria Anna Rapsomaniki,Panagiotis Kotsantis,Ioanna-Eleni Symeonidou,Nickolaos-Nikiforos Giakoumakis,Stavros L. Taraviras,Zoi Lygerou
#t2012
#cBioinformatics
#index3456221
#% 
#!
  
#*BRAT-BW: efficient and accurate mapping of bisulfite-treated reads.
#@Elena Yavorska Harris,Nadia Ponts,Karine G. Le Roch,Stefano Lonardi
#t2012
#cBioinformatics
#index3456228
#% 
#!
  
#*- a resource-efficient assembler.
#@Thomas C. Conway,Jeremy Wazny,Andrew J. Bromage,Justin Zobel,Bryan Beresford-Smith
#t2012
#cBioinformatics
#index3456361
#% 
#!
  
#*BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array.
#@Leslie Aïchaoui,Matthieu Jules,Ludovic Le Chat,Stéphane Aymerich,Vincent Fromion,Anne Goelzer
#t2012
#cBioinformatics
#index3456375
#% 
#!
  
#*Bayesian model-based clustering of temporal gene expression using autoregressive panel data approach.
#@Moysés Nascimento,Thelma Sáfadi,Fabyano Fonseca e Silva,Ana Carolina C. Nascimento
#t2012
#cBioinformatics
#index3456468
#% 
#!
  
#*Targeted retrieval of gene expression measurements using regulatory models.
#@Elisabeth Georgii,Jarkko Salojärvi,Mikael Brosché,Jaakko Kangasjärvi,Samuel Kaski
#t2012
#cBioinformatics
#index3456403
#% 
#!
  
#*Application of asymmetric statistical potentials to antibody-protein docking.
#@Ryan Brenke,David R. Hall,Gwo-Yu Chuang,Stephen R. Comeau,Tanggis Bohnuud,Dmitri Beglov,Ora Schueler-Furman,Sandor Vajda,Dima Kozakov
#t2012
#cBioinformatics
#index3456248
#% 
#!
  
#*EuGene: maximizing synthetic gene design for heterologous expression.
#@Paulo Gaspar,José Luís Oliveira,Jörg Frommlet,Manuel A. S. Santos,Gabriela R. Moura
#t2012
#cBioinformatics
#index3456275
#% 
#!
  
#*Bayesian ontology querying for accurate and noise-tolerant semantic searches.
#@Sebastian Bauer,Sebastian Köhler,Marcel H. Schulz,Peter N. Robinson
#t2012
#cBioinformatics
#index3456396
#% 
#!
  
#*A regression model for estimating DNA copy number applied to capture sequencing data.
#@Guillem Rigaill,Sidney Cadot,Roelof J. C. Kluin,Zheng Xue,Rene Bernards,Ian J. Majewski,Lodewyk F. A. Wessels
#t2012
#cBioinformatics
#index3456289
#% 
#!
  
#*NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species.
#@Anat Kreimer,Adi Doron-Faigenboim,Elhanan Borenstein,Shiri Freilich
#t2012
#cBioinformatics
#index3456252
#% 
#!
  
#*SALIGN: a web server for alignment of multiple protein sequences and structures.
#@Hannes Braberg,Benjamin M. Webb,Elina Tjioe,Ursula Pieper,Andrej Sali,Mallur S. Madhusudhan
#t2012
#cBioinformatics
#index3456390
#% 
#!
  
#*UniMoG - a unifying framework for genomic distance calculation and sorting based on DCJ.
#@Rolf Hilker,Corinna Sickinger,Christian N. S. Pedersen,Jens Stoye
#t2012
#cBioinformatics
#index3456310
#% 
#!
  
#*OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets.
#@Nikolaos Alachiotis,Alexandros Stamatakis,Pavlos Pavlidis
#t2012
#cBioinformatics
#index3456339
#% 
#!
  
#*Efficient RNA pairwise structure comparison by SETTER method.
#@David Hoksza,Daniel Svozil
#t2012
#cBioinformatics
#index3456444
#% 
#!
  
#*Qualitative translation of relations from BioPAX to SBML qual.
#@Finja Büchel,Clemens Wrzodek,Florian Mittag,Andreas Dräger,Johannes Eichner,Nicolas Rodriguez,Nicolas Le Novère,Andreas Zell
#t2012
#cBioinformatics
#index3456458
#% 
#!
  
#*CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation.
#@Maria Ortiz-Estevez,Ander Aramburu,Henrik Bengtsson,Pierre Neuvial,Angel Rubio
#t2012
#cBioinformatics
#index3456367
#% 
#!
  
#*PyKnot: a PyMOL tool for the discovery and analysis of knots in proteins.
#@Rhonald C. Lua
#t2012
#cBioinformatics
#index3456324
#% 
#!
  
#*ANGES: reconstructing ANcestral GEnomeS maps.
#@Bradley R. Jones,Ashok Rajaraman,Eric Tannier,Cedric Chauve
#t2012
#cBioinformatics
#index3456392
#% 
#!
  
#*TMBB-DB: a transmembrane β-barrel proteome database.
#@Thomas C. Freeman Jr.,William C. Wimley
#t2012
#cBioinformatics
#index3456307
#% 
#!
  
#*identification software (ISIS): a machine learning approach to tandem mass spectral identification of lipids.
#@Lars J. Kangas,Thomas O. Metz,Giorgis Isaac,Brian T. Schrom,Bojana Ginovska-Pangovska,Luning Wang,Li Tan,Robert R. Lewis,John H. Miller
#t2012
#cBioinformatics
#index3456404
#% 
#!
  
#*CBrowse: a SAM/BAM-based contig browser for transcriptome assembly visualization and analysis.
#@Pei Li,Guoli Ji,Min Dong,Emily Schmidt,Douglas Lenox,Liangliang Chen,Qi Liu,Lin Liu,Jie Zhang,Chun Liang
#t2012
#cBioinformatics
#index3456338
#% 
#!
  
#*Voronto: mapper for expression data to ontologies.
#@Rodrigo Santamaría,Philippe Pierre
#t2012
#cBioinformatics
#index3456217
#% 
#!
  
#*A common ancestry for BAP1 and Uch37 regulators.
#@Luis Sánchez-Pulido,Lesheng Kong,Chris P. Ponting
#t2012
#cBioinformatics
#index3456346
#% 
#!
  
#*synbreed: a framework for the analysis of genomic prediction data using R.
#@Valentin Wimmer,Theresa Albrecht,Hans-Jürgen Auinger,Chris-Carolin Schön
#t2012
#cBioinformatics
#index3456315
#% 
#!
  
#*Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.
#@Jinghua Gu,Jianhua Xuan,Rebecca B. Riggins,Li Chen,Yue Wang,Robert Clarke
#t2012
#cBioinformatics
#index3456288
#% 
#!
  
#*Bayesian assignment of gene ontology terms to gene expression experiments.
#@Peter Sykacek
#t2012
#cBioinformatics
#index3456352
#% 
#!
  
#*RESQUE: Network reduction using semi-Markov random walk scores for efficient querying of biological networks.
#@Sayed Mohammad Ebrahim Sahraeian,Byung-Jun Yoon
#t2012
#cBioinformatics
#index3456432
#% 
#!
  
#*Folding RNA/DNA hybrid duplexes.
#@Ronny Lorenz,Ivo L. Hofacker,Stephan H. F. Bernhart
#t2012
#cBioinformatics
#index3456385
#% 
#!
  
#*MyMiner: a web application for computer-assisted biocuration and text annotation.
#@David Salgado,Martin Krallinger,Marc Depaule,Elodie Drula,Ashish V. Tendulkar,Florian Leitner,Alfonso Valencia,Christophe Marcelle
#t2012
#cBioinformatics
#index3456300
#% 
#!
  
#*Fast and accurate read alignment for resequencing.
#@John C. Mu,Hui Jiang,Amirhossein Kiani,Marghoob Mohiyuddin,Narges Bani Asadi,Wing H. Wong
#t2012
#cBioinformatics
#index3456311
#% 
#!
  
#*CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform.
#@Yongchao Liu,Bertil Schmidt,Douglas L. Maskell
#t2012
#cBioinformatics
#index3456440
#% 
#!
  
#*Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm.
#@Ari Löytynoja,Albert J. Vilella,Nick Goldman
#t2012
#cBioinformatics
#index3456238
#% 
#!
  
#*MALDIquant: a versatile R package for the analysis of mass spectrometry data.
#@Sebastian Gibb,Korbinian Strimmer
#t2012
#cBioinformatics
#index3456467
#% 
#!
  
#*SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts.
#@Michael C. Ryan,James A. Cleland,RyangGuk Kim,Wing Chung Wong,John N. Weinstein
#t2012
#cBioinformatics
#index3456378
#% 
#!
  
#*Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks.
#@Vicente Acuña,Paulo Vieira Milreu,Ludovic Cottret,Alberto Marchetti-Spaccamela,Leen Stougie,Marie-France Sagot
#t2012
#cBioinformatics
#index3456368
#% 
#!
  
#*Identification of functional CNV region networks using a CNV-gene mapping algorithm in a genome-wide scale.
#@Chihyun Park,Jaegyoon Ahn,Youngmi Yoon,Sanghyun Park
#t2012
#cBioinformatics
#index3456417
#% 
#!
  
#*Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data.
#@Nico Pfeifer,Thomas Lengauer
#t2012
#cBioinformatics
#index3456353
#% 
#!
  
#*OnlineCall: fast online parameter estimation and base calling for illumina's next-generation sequencing.
#@Shreepriya Das,Haris Vikalo
#t2012
#cBioinformatics
#index3456261
#% 
#!
  
#*Mosaic: making biological sense of complex networks.
#@Chao Zhang,Kristina Hanspers,Allan Kuchinsky,Nathan Salomonis,Dong Xu,Alexander R. Pico
#t2012
#cBioinformatics
#index3456220
#% 
#!
  
#*MotifSuite: workflow for probabilistic motif detection and assessment.
#@Marleen Claeys,Valerie Storms,Hong Sun,Tom Michoel,Kathleen Marchal
#t2012
#cBioinformatics
#index3456249
#% 
#!
  
#*Estimation of pleiotropy between complex diseases using single-nucleotide polymorphism-derived genomic relationships and restricted maximum likelihood.
#@S. H. Lee,J. Yang,M. E. Goddard,Peter M. Visscher,N. R. Wray
#t2012
#cBioinformatics
#index3456342
#% 
#!
  
#*GlycoCD: a repository for carbohydrate-related CD antigens.
#@Sonu Kumar,Thomas Lütteke,Reinhard Schwartz-Albiez
#t2012
#cBioinformatics
#index3456260
#% 
#!
  
#*Drug target prediction using adverse event report systems: a pharmacogenomic approach.
#@Masataka Takarabe,Masaaki Kotera,Yosuke Nishimura,Susumu Goto,Yoshihiro Yamanishi
#t2012
#cBioinformatics
#index3456460
#% 
#!
  
#*SQID-XLink: implementation of an intensity-incorporated algorithm for cross-linked peptide identification.
#@Wenzhou Li,Heather A. O'Neill,Vicki H. Wysocki
#t2012
#cBioinformatics
#index3456457
#% 
#!
  
#*SimRare: a program to generate and analyze sequence-based data for association studies of quantitative and qualitative traits.
#@Biao Li,Gao Wang,Suzanne M. Leal
#t2012
#cBioinformatics
#index3456325
#% 
#!
  
#*DySC: software for greedy clustering of 16S rRNA reads.
#@Zejun Zheng,Stefan Kramer,Bertil Schmidt
#t2012
#cBioinformatics
#index3456235
#% 
#!
  
#*zCall: a rare variant caller for array-based genotyping: Genetics and population analysis.
#@Jacqueline I. Goldstein,Andrew Crenshaw,Jason Carey,George B. Grant,Jared Maguire,Menachem Fromer,Colm O'Dushlaine,Jennifer L. Moran,Kimberly Chambert,Christine Stevens,Pamela Sklar,Christina M. Hultman,Shaun Purcell,Steven A. McCarroll,Patrick F. Sullivan,Mark J. Daly,Benjamin M. Neale
#t2012
#cBioinformatics
#index3456478
#% 
#!
  
#*Ka-me: a Voronoi image analyzer.
#@Noppadon Khiripet,Wongarnet Khantuwan,John R. Jungck
#t2012
#cBioinformatics
#index3456318
#% 
#!
  
#*RIBFIND: a web server for identifying rigid bodies in protein structures and to aid flexible fitting into cryo EM maps.
#@Arun Prasad Pandurangan,Maya Topf
#t2012
#cBioinformatics
#index3456335
#% 
#!
  
#*DanteR: an extensible R-based tool for quantitative analysis of -omics data.
#@Thomas Taverner,Yuliya V. Karpievitch,Ashoka D. Polpitiya,Joseph N. Brown,Alan R. Dabney,Gordon A. Anderson,Richard D. Smith
#t2012
#cBioinformatics
#index3456294
#% 
#!
  
#*Inferring epigenetic and transcriptional regulation during blood cell development with a mixture of sparse linear models.
#@Thais G. do Rego,Helge G. Roider,Francisco de A. T. de Carvalho,Ivan G. Costa
#t2012
#cBioinformatics
#index3456450
#% 
#!
  
#*SRMA: an R package for resequencing array data analysis.
#@Nianxiang Zhang,Yan Xu,Martin O'Hely,Terence P. Speed,Curt Scharfe,Wenyi Wang
#t2012
#cBioinformatics
#index3456443
#% 
#!
  
#*Evolution of gene neighborhoods within reconciled phylogenies.
#@Sèverine Bérard,Coralie Gallien,Bastien Boussau,Gergely J. Szöllosi,Vincent Daubin,Eric Tannier
#t2012
#cBioinformatics
#index3456253
#% 
#!
  
#*Two effective methods for correcting experimental high-throughput screening data.
#@Plamen Dragiev,Robert Nadon,Vladimir Makarenkov
#t2012
#cBioinformatics
#index3456376
#% 
#!
  
#*SEQCHIP: a powerful method to integrate sequence and genotype data for the detection of rare variant associations.
#@Dajiang J. Liu,Suzanne M. Leal
#t2012
#cBioinformatics
#index3456439
#% 
#!
  
#*Reveal - visual eQTL analytics.
#@Günter Jäger,Florian Battke,Kay Nieselt
#t2012
#cBioinformatics
#index3456394
#% 
#!
  
#*PRISM: Pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants.
#@Yue Jiang,Yadong Wang,Michael Brudno
#t2012
#cBioinformatics
#index3456276
#% 
#!
  
#*Ancestral haplotype-based association mapping with generalized linear mixed models accounting for stratification.
#@Z. Zhang,F. Guillaume,A. Sartelet,C. Charlier,M. Georges,F. Farnir,T. Druet
#t2012
#cBioinformatics
#index3456409
#% 
#!
  
#*R/EBcoexpress: an empirical Bayesian framework for discovering differential co-expression.
#@John A. Dawson,Shuyun Ye,Christina Kendziorski
#t2012
#cBioinformatics
#index3456461
#% 
#!
  
#*treePL: divergence time estimation using penalized likelihood for large phylogenies.
#@Stephen A. Smith,Brian C. O'Meara
#t2012
#cBioinformatics
#index3456433
#% 
#!
  
#*COMPADRE: an R and web resource for pathway activity analysis by component decompositions.
#@Roberto-Rafael Ramos-Rodriguez,Raquel Cuevas-Diaz-Duran,Francesco Falciani,José G. Tamez-Peña,Victor Trevino
#t2012
#cBioinformatics
#index3456379
#% 
#!
  
#*Measuring and comparing structural fluctuation patterns in large protein datasets.
#@Edvin Fuglebakk,Julian Echave,Nathalie Reuter
#t2012
#cBioinformatics
#index3456287
#% 
#!
  
#*GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research - an update.
#@Rod Peakall,Peter E. Smouse
#t2012
#cBioinformatics
#index3456393
#% 
#!
  
#*Accelerated protein structure comparison using TM-score-GPU.
#@Ling-Hong Hung,Ram Samudrala
#t2012
#cBioinformatics
#index3456420
#% 
#!
  
#*An integrated approach to reduce the impact of minor allele frequency and linkage disequilibrium on variable importance measures for genome-wide data.
#@Raymond Walters,Charles Laurin,Gitta H. Lubke
#t2012
#cBioinformatics
#index3456242
#% 
#!
  
#*Impact of ontology evolution on functional analyses.
#@Anika Groß,Michael Hartung,Kay Prüfer,Janet Kelso,Erhard Rahm
#t2012
#cBioinformatics
#index3456395
#% 
#!
  
#*ECCB 2012: The 11 European Conference on Computational Biology.
#@Torsten Schwede,Dagmar Iber
#t2012
#cBioinformatics
#index3456402
#% 
#!
  
#*Nonlinear dimension reduction with Wright-Fisher kernel for genotype aggregation and association mapping.
#@Hongjie Zhu,Lexin Li,Hua Zhou
#t2012
#cBioinformatics
#index3456226
#% 
#!
  
#*Uncovering the co-evolutionary network among prokaryotic genes.
#@Ofir Cohen,Haim Ashkenazy,David Burstein,Tal Pupko
#t2012
#cBioinformatics
#index3456374
#% 
#!
  
#*miRcode: a map of putative microRNA target sites in the long non-coding transcriptome.
#@Ashwini Jeggari,Debora S. Marks,Erik Larsson
#t2012
#cBioinformatics
#index3456413
#% 
#!
  
#*Context-specific transcriptional regulatory network inference from global gene expression maps using double two-way -tests.
#@Jianlong Qi,Tom Michoel
#t2012
#cBioinformatics
#index3456269
#% 
#!
  
#*RILogo: visualizing RNA-RNA interactions.
#@Peter Menzel,Stefan E. Seemann,Jan Gorodkin
#t2012
#cBioinformatics
#index3456456
#% 
#!
  
#*Telescoper: assembly of highly repetitive regions.
#@Ma'ayan Bresler,Sara Sheehan,Andrew H. Chan,Yun S. Song
#t2012
#cBioinformatics
#index3456259
#% 
#!
  
#*Fast and sensitive mapping of bisulfite-treated sequencing data.
#@Christian Otto,Peter F. Stadler,Steve Hoffmann
#t2012
#cBioinformatics
#index3456326
#% 
#!
  
#*Relating drug-protein interaction network with drug side effects.
#@Sayaka Mizutani,Edouard Pauwels,Véronique Stoven,Susumu Goto,Yoshihiro Yamanishi
#t2012
#cBioinformatics
#index3456268
#% 
#!
  
#*SANS: high-throughput retrieval of protein sequences allowing 50% mismatches.
#@Patrik Koskinen,Liisa Holm
#t2012
#cBioinformatics
#index3456442
#% 
#!
  
#*From phenotype to genotype: an association study of longitudinal phenotypic markers to Alzheimer's disease relevant SNPs.
#@Hua Wang,Feiping Nie,Heng Huang,Jingwen Yan,Sungeun Kim,Kwangsik Nho,Shannon L. Risacher,Andrew J. Saykin,Li Shen
#t2012
#cBioinformatics
#index3456308
#% 
#!
  
#*Bacterial GRAS domain proteins throw new light on gibberellic acid response mechanisms.
#@Dapeng Zhang,Lakshminarayan M. Iyer,L. Aravind
#t2012
#cBioinformatics
#index3456451
#% 
#!
  
#*Predicting drug-target interactions from chemical and genomic kernels using Bayesian matrix factorization.
#@Mehmet Gönen
#t2012
#cBioinformatics
#index3456241
#% 
#!
  
#*DiNuP: a systematic approach to identify regions of differential nucleosome positioning.
#@Kai Fu,Qianzi Tang,Jianxing Feng,X. Shirley Liu,Yong Zhang
#t2012
#cBioinformatics
#index3456277
#% 
#!
  
#*The architecture of the gene regulatory networks of different tissues.
#@Jie Li,Xu Hua,Martin Haubrock,Jin Wang,Edgar Wingender
#t2012
#cBioinformatics
#index3456479
#% 
#!
  
#*Network inference using steady-state data and Goldbeter-koshland kinetics.
#@Chris J. Oates,Bryan T. J. Hennessy,Yiling Lu,Gordon B. Mills,Sach Mukherjee
#t2012
#cBioinformatics
#index3456359
#% 
#!
  
#*Performance of computational tools in evaluating the functional impact of laboratory-induced amino acid mutations.
#@Vanessa E. Gray,Kimberly R. Kukurba,Sudhir Kumar
#t2012
#cBioinformatics
#index3456219
#% 
#!
  
#*Side-chain rotamer changes upon ligand binding: common, crucial, correlate with entropy and rearrange hydrogen bonding.
#@Francis Gaudreault,Matthieu Chartier,Rafael Najmanovich
#t2012
#cBioinformatics
#index3456295
#% 
#!
  
#*Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers.
#@Yasuo Tabei,Edouard Pauwels,Véronique Stoven,Kazuhiro Takemoto,Yoshihiro Yamanishi
#t2012
#cBioinformatics
#index3456360
#% 
#!
  
#*POOL server: machine learning application for functional site prediction in proteins.
#@Srinivas Somarowthu,Mary Jo Ondrechen
#t2012
#cBioinformatics
#index3456341
#% 
#!
  
#*Empirical Bayes conditional independence graphs for regulatory network recovery.
#@Rami Mahdi,Abishek S. Madduri,Guoqing Wang,Yael Strulovici-Barel,Jacqueline Salit,Neil R. Hackett,Ronald G. Crystal,Jason G. Mezey
#t2012
#cBioinformatics
#index3456373
#% 
#!
  
#*A robust approach to extract biomedical events from literature.
#@Quoc-Chinh Bui,Peter M. A. Sloot
#t2012
#cBioinformatics
#index3456254
#% 
#!
  
#*Associating microbiome composition with environmental covariates using generalized UniFrac distances.
#@Jun Chen,Kyle Bittinger,Emily S. Charlson,Christian Hoffmann,James Lewis,Gary D. Wu,Ronald G. Collman,Frederic D. Bushman,Hongzhe Li
#t2012
#cBioinformatics
#index3456286
#% 
#!
  
#*BEDOPS: high-performance genomic feature operations.
#@Shane Neph,Scott Kuehn,Alex P. Reynolds,Eric Haugen,Robert E. Thurman,Audra K. Johnson,Eric Rynes,Matthew T. Maurano,Jeff Vierstra,Sean Thomas,Richard Sandstrom,Richard Humbert,John A. Stamatoyannopoulos
#t2012
#cBioinformatics
#index3456320
#% 
#!
  
#*Multiple instance learning of Calmodulin binding sites.
#@Fayyaz ul Amir Afsar Minhas,Asa Ben-Hur
#t2012
#cBioinformatics
#index3456317
#% 
#!
  
#*Decoding properties of tRNA leave a detectable signal in codon usage bias.
#@Alexander C. J. Roth
#t2012
#cBioinformatics
#index3456354
#% 
#!
  
#*Marker2sequence, mine your QTL regions for candidate genes.
#@Pierre-Yves Chibon,Heiko Schoof,Richard G. F. Visser,Richard Finkers
#t2012
#cBioinformatics
#index3456236
#% 
#!
  
#*Software support for SBGN maps: SBGN-ML and LibSBGN.
#@Martijn P. van Iersel,Alice Villéger,Tobias Czauderna,Sarah E. Boyd,Frank T. Bergmann,Augustin Luna,Emek Demir,Anatoly A. Sorokin,Ugur Dogrusöz,Yukiko Matsuoka,Akira Funahashi,Mirit I. Aladjem,Huaiyu Mi,Stuart L. Moodie,Hiroaki Kitano,Nicolas Le Novère,Falk Schreiber
#t2012
#cBioinformatics
#index3456229
#% 
#!
  
#*PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data.
#@Zsuzsanna Sükösd,Bjarne Knudsen,Jørgen Kjems,Christian N. S. Pedersen
#t2012
#cBioinformatics
#index3456336
#% 
#!
  
#*BatMis: a fast algorithm for -mismatch mapping.
#@Chandana Tennakoon,Rikky W. Purbojati,Wing-Kin Sung
#t2012
#cBioinformatics
#index3456299
#% 
#!
  
#*ChromoHub: a data hub for navigators of chromatin-mediated signalling.
#@Lihua Liu,Xi Ting Zhen,Emily Denton,Brian Marsden,Matthieu Schapira
#t2012
#cBioinformatics
#index3456401
#% 
#!
  
#*EnrichNet: network-based gene set enrichment analysis.
#@Enrico Glaab,Anaïs Baudot,Natalio Krasnogor,Reinhard Schneider,Alfonso Valencia
#t2012
#cBioinformatics
#index3456419
#% 
#!
  
#*Techniques to cope with missing data in host-pathogen protein interaction prediction.
#@Meghana Kshirsagar,Jaime G. Carbonell,Judith Klein-Seetharaman
#t2012
#cBioinformatics
#index3456313
#% 
#!
  
#*DELLY: structural variant discovery by integrated paired-end and split-read analysis.
#@Tobias Rausch,Thomas Zichner,Andreas Schlattl,Adrian M. Stütz,Vladimir Benes,Jan O. Korbel
#t2012
#cBioinformatics
#index3456400
#% 
#!
  
#*MetiTree: a web application to organize and process high-resolution multi-stage mass spectrometry metabolomics data.
#@Miguel Rojas-Chertó,Michael van Vliet,Julio E. Peironcely,Ronnie van Doorn,Maarten Kooyman,Tim te Beek,Marc A. van Driel,Thomas Hankemeier,Theo H. Reijmers
#t2012
#cBioinformatics
#index3456218
#% 
#!
  
#*Identification of -acting siRNAs and their regulatory cascades in grapevine.
#@Changqing Zhang,Guangping Li,Jin Wang,Jinggui Fang
#t2012
#cBioinformatics
#index3456384
#% 
#!
  
#*Identification of feedback loops in neural networks based on multi-step Granger causality.
#@Chao-Yi Dong,Dongkwan Shin,Sunghoon Joo,Yoonkey Nam,Kwang-Hyun Cho
#t2012
#cBioinformatics
#index3456462
#% 
#!
  
#*A MATLAB toolbox for structural kinetic modeling.
#@Dorothee Girbig,Joachim Selbig,Sergio Grimbs
#t2012
#cBioinformatics
#index3456333
#% 
#!
  
#*SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.
#@Zhifu Sun,Saurabh Baheti,Sumit Middha,Rahul Kanwar,Yuji Zhang,Xing Li,Andreas S. Beutler,Eric W. Klee,Yan W. Asmann,E. Aubrey Thompson,Jean-Pierre Kocher
#t2012
#cBioinformatics
#index3456258
#% 
#!
  
#*Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology.
#@Robert Hoehndorf,Midori A. Harris,Heinrich Herre,Gabriella Rustici,Georgios V. Gkoutos
#t2012
#cBioinformatics
#index3456327
#% 
#!
  
#*Deep architectures for protein contact map prediction.
#@Pietro di Lena,Ken Nagata,Pierre Baldi
#t2012
#cBioinformatics
#index3456271
#% 
#!
  
#*OSA: a fast and accurate alignment tool for RNA-Seq.
#@Jun Hu,Huanying Ge,Matthew Newman,Kejun Liu
#t2012
#cBioinformatics
#index3456358
#% 
#!
  
#*INRICH: interval-based enrichment analysis for genome-wide association studies.
#@Phil H. Lee,Colm O'Dushlaine,Brett Thomas,Shaun Purcell
#t2012
#cBioinformatics
#index3456427
#% 
#!
  
#*Statistical interpretation of machine learning-based feature importance scores for biomarker discovery.
#@Vân Anh Huynh-Thu,Yvan Saeys,Louis Wehenkel,Pierre Geurts
#t2012
#cBioinformatics
#index3456282
#% 
#!
  
#*Speeding up tandem mass spectral identification using indexes.
#@Xiaowen Liu,Alessandro Mammana,Vineet Bafna
#t2012
#cBioinformatics
#index3456265
#% 
#!
  
#*ETAscape: analyzing protein networks to predict enzymatic function and substrates in Cytoscape.
#@Benjamin J. Bachman,Eric Venner,Rhonald C. Lua,Serkan Erdin,Olivier Lichtarge
#t2012
#cBioinformatics
#index3456477
#% 
#!
  
#*Anonymous nuclear loci in non-model organisms: making the most of high-throughput genome surveys.
#@Terry Bertozzi,Kate L. Sanders,Mark J. Sistrom,Michael G. Gardner
#t2012
#cBioinformatics
#index3456348
#% 
#!
  
#*Small-molecule inhibitor starting points learned from protein-protein interaction inhibitor structure.
#@David Ryan Koes,Carlos J. Camacho
#t2012
#cBioinformatics
#index3456473
#% 
#!
  
#*Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies.
#@Robert Kofler,Christian Schlötterer
#t2012
#cBioinformatics
#index3456387
#% 
#!
  
#*Improvement of 3D protein models using multiple templates guided by single-template model quality assessment.
#@Maria T. Buenavista,Daniel B. Roche,Liam J. McGuffin
#t2012
#cBioinformatics
#index3456434
#% 
#!
  
#*The Hematopoietic Expression Viewer: expanding mobile apps as a scientific tool.
#@Regis A. James,Mitchell M. Rao,Edward S. Chen,Margaret A. Goodell,Chad A. Shaw
#t2012
#cBioinformatics
#index3456227
#% 
#!
  
#*A strategy for building neuroanatomy ontologies.
#@David Osumi-Sutherland,Simon Reeve,Christopher J. Mungall,Fabian Neuhaus,Alan Ruttenberg,Gregory S. X. E. Jefferis,J. Douglas Armstrong
#t2012
#cBioinformatics
#index3456278
#% 
#!
  
#*SYNCSA - R tool for analysis of metacommunities based on functional traits and phylogeny of the community components.
#@Vanderlei J. Debastiani,Valério D. Pillar
#t2012
#cBioinformatics
#index3456244
#% 
#!
  
#*RAxML-Light: a tool for computing terabyte phylogenies.
#@Alexandros Stamatakis,Andre J. Aberer,C. Goll,S. A. Smith,Simon A. Berger,Fernando Izquierdo-Carrasco
#t2012
#cBioinformatics
#index3456298
#% 
#!
  
#*SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes.
#@Elmar Pruesse,Jörg Peplies,Frank Oliver Glöckner
#t2012
#cBioinformatics
#index3456372
#% 
#!
  
#*Event extraction across multiple levels of biological organization.
#@Sampo Pyysalo,Tomoko Ohta,Makoto Miwa,Han-Cheol Cho,Junichi Tsujii,Sophia Ananiadou
#t2012
#cBioinformatics
#index3456344
#% 
#!
  
#*Identifying functional modules in interaction networks through overlapping Markov clustering.
#@Yu-Keng Shih,Srinivasan Parthasarathy
#t2012
#cBioinformatics
#index3456435
#% 
#!
  
#*Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics.
#@Robert Hoehndorf,Michel Dumontier,Georgios V. Gkoutos
#t2012
#cBioinformatics
#index3456279
#% 
#!
  
#*iBBiG: iterative binary bi-clustering of gene sets.
#@Daniel Gusenleitner,Eleanor Howe,Stefan Bentink,John Quackenbush,Aedín C. Culhane
#t2012
#cBioinformatics
#index3456305
#% 
#!
  
#*Bluues server: electrostatic properties of wild-type and mutated protein structures.
#@Ian Walsh,Giovanni Minervini,Alessandra Corazza,Gennaro Esposito,Silvio C. E. Tosatto,Federico Fogolari
#t2012
#cBioinformatics
#index3456355
#% 
#!
  
#*Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data.
#@Xiaoquan Su,Jian Xu,Kang Ning
#t2012
#cBioinformatics
#index3456292
#% 
#!
  
#*Finding differentially expressed regions of arbitrary length in quantitative genomic data based on marked point process model.
#@Hiroshi Hatsuda
#t2012
#cBioinformatics
#index3456411
#% 
#!
  
#*Gene-gene interaction analysis for the survival phenotype based on the Cox model.
#@Seungyeoun Lee,Min-Seok Kwon,Jung Mi Oh,Taesung Park
#t2012
#cBioinformatics
#index3456407
#% 
#!
  
#*YAHA: fast and flexible long-read alignment with optimal breakpoint detection.
#@Gregory G. Faust,Ira M. Hall
#t2012
#cBioinformatics
#index3456386
#% 
#!
  
#*Density parameter estimation for finding clusters of homologous proteins - tracing actinobacterial pathogenicity lifestyles.
#@Richard R?ttger,Prabhav Kalaghatgi,Peng Sun,Siomar de Castro Soares,Vasco Azevedo,Tobias Wittkop,Jan Baumbach
#t2013
#cBioinformatics
#index3613952
#% 
#!
  
#*Stability analysis of phylogenetic trees.
#@Saad I. Sheikh,Tamer Kahveci,Sanjay Ranka,J. Gordon Burleigh
#t2013
#cBioinformatics
#index3613927
#% 
#!
  
#*ToxPi GUI: an interactive visualization tool for transparent integration of data from diverse sources of evidence.
#@David M. Reif,Myroslav Sypa,Eric F. Lock,Fred A. Wright,Ander Wilson,Tommy Cathey,Richard R. Judson,Ivan Rusyn
#t2013
#cBioinformatics
#index3613920
#% 
#!
  
#*PAIR: paired allelic log-intensity-ratio-based normalization method for SNP-CGH arrays.
#@Shengping Yang,Stanley Pounds,Kun Zhang,Zhide Fang
#t2013
#cBioinformatics
#index3613899
#% 
#!
  
#*iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data.
#@Wenting Wang,Veerabhadran Baladandayuthapani,Jeffrey S. Morris,Bradley M. Broom,Ganiraju Manyam,Kim-Anh Do
#t2013
#cBioinformatics
#index3613916
#% 
#!
  
#*Characterization of disordered proteins with ENSEMBLE.
#@Micka?l Krzeminski,Joseph A. Marsh,Chris Neale,Wing-Yiu Choy,Julie D. Forman-Kay
#t2013
#cBioinformatics
#index3613921
#% 
#!
  
#*Inference of gene regulatory networks from genome-wide knockout fitness data.
#@Liming Wang,Xiaodong Wang,Adam P. Arkin,Michael S. Samoilov
#t2013
#cBioinformatics
#index3613934
#% 
#!
  
#*An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values.
#@Nozomu Sakurai,Takeshi Ara,Shigehiko Kanaya,Yukiko Nakamura,Yoko Iijima,Mitsuo Enomoto,Takeshi Motegi,Koh Aoki,Hideyuki Suzuki,Daisuke Shibata
#t2013
#cBioinformatics
#index3613910
#% 
#!
  
#*PASS-bis: a bisulfite aligner suitable for whole methylome analysis of Illumina and SOLiD reads.
#@Davide Campagna,Andrea Telatin,Claudio Forcato,Nicola Vitulo,Giorgio Valle
#t2013
#cBioinformatics
#index3613903
#% 
#!
  
#*Fast and robust optical flow for time-lapse microscopy using super-voxels.
#@Fernando Amat,Eugene W. Myers,Philipp J. Keller
#t2013
#cBioinformatics
#index3613908
#% 
#!
  
#*VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue.
#@Yunxin Chen,Hui Yao,Erika J. Thompson,Nizar M. Tannir,John N. Weinstein,Xiaoping Su
#t2013
#cBioinformatics
#index3613922
#% 
#!
  
#*NetCAD: a network analysis tool for coronary artery disease-associated PPI network.
#@Guomin Ren,Zhihua Liu
#t2013
#cBioinformatics
#index3613933
#% 
#!
  
#*ImgLib2 - generic image processing in Java.
#@Tobias Pietzsch,Stephan Preibisch,Pavel Tomancak,Stephan Saalfeld
#t2013
#cBioinformatics
#index3613935
#% 
#!
  
#*HD-CNV: hotspot detector for copy number variants.
#@Jenna L. Butler,Marjorie Elizabeth Osborne Locke,Kathleen A. Hill,Mark Daley
#t2013
#cBioinformatics
#index3613950
#% 
#!
  
#*Multistructural hot spot characterization with FTProd.
#@Lane Votapka,Rommie E. Amaro
#t2013
#cBioinformatics
#index3613932
#% 
#!
  
#*Drug-target interaction prediction by learning from local information and neighbors.
#@Jian-Ping Mei,Chee-Keong Kwoh,Peng Yang,Xiaoli Li,Jie Zheng
#t2013
#cBioinformatics
#index3613936
#% 
#!
  
#*RetroSeq: transposable element discovery from next-generation sequencing data.
#@Thomas M. Keane,Kim Wong,David J. Adams
#t2013
#cBioinformatics
#index3613902
#% 
#!
  
#*Concerning the accuracy of Fido and parameter choice.
#@Oliver Serang
#t2013
#cBioinformatics
#index3613946
#% 
#!
  
#*Efficient statistical significance approximation for local similarity analysis of high-throughput time series data.
#@Li C. Xia,Dongmei Ai,Jacob Cram,Jed A. Fuhrman,Fengzhu Sun
#t2013
#cBioinformatics
#index3613911
#% 
#!
  
#*An effective framework for reconstructing gene regulatory networks from genetical genomics data.
#@Robert J. Flassig,S. Heise,Kai Sundmacher,Steffen Klamt
#t2013
#cBioinformatics
#index3613909
#% 
#!
  
#*VAGUE: a graphical user interface for the Velvet assembler.
#@David R. Powell,Torsten Seemann
#t2013
#cBioinformatics
#index3613923
#% 
#!
  
#*ChromoZoom: a flexible, fluid, web-based genome browser.
#@Theodore R. Pak,Frederick P. Roth
#t2013
#cBioinformatics
#index3613924
#% 
#!
  
#*nestly - a framework for running software with nested parameter choices and aggregating results.
#@Connor McCoy,Aaron Gallagher,Noah G. Hoffman,Frederick A. Matsen
#t2013
#cBioinformatics
#index3613905
#% 
#!
  
#*Bioclipse-R: integrating management and visualization of life science data with statistical analysis.
#@Ola Spjuth,Valentin Georgiev,Lars Carlsson,Jonathan Alvarsson,Arvid Berg,Egon L. Willighagen,Jarl E. S. Wikberg,Martin Eklund
#t2013
#cBioinformatics
#index3613912
#% 
#!
  
#*Glycosylation Network Analysis Toolbox: a MATLAB-based environment for systems glycobiology.
#@Gang Liu,Apurv Puri,Sriram Neelamegham
#t2013
#cBioinformatics
#index3613906
#% 
#!
  
#*Scaffolding low quality genomes using orthologous protein sequences.
#@Yang I. Li,Richard R. Copley
#t2013
#cBioinformatics
#index3613949
#% 
#!
  
#*Musket: a multistage mer spectrum-based error corrector for Illumina sequence data.
#@Yongchao Liu,Jan Schr?der,Bertil Schmidt
#t2013
#cBioinformatics
#index3613931
#% 
#!
  
#*A Lasso multi-marker mixed model for association mapping with population structure correction.
#@Barbara Rakitsch,Christoph Lippert,Oliver Stegle,Karsten M. Borgwardt
#t2013
#cBioinformatics
#index3613937
#% 
#!
  
#*PLI: a web-based tool for the comparison of protein-ligand interactions observed on PDB structures.
#@Anna Maria Gallina,Paola Bisignano,Maurizio Bergamino,Domenico Bordo
#t2013
#cBioinformatics
#index3613951
#% 
#!
  
#*High-throughput microbial population genomics using the Cortex variation assembler.
#@Zamin Iqbal,Isaac Turner,Gil McVean
#t2013
#cBioinformatics
#index3613938
#% 
#!
  
#*Visualization and Phospholipid Identification (VaLID): online integrated search engine capable of identifying and visualizing glycerophospholipids with given mass.
#@Alexandre P. Blanchard,Graeme S. V. McDowell,Nico Valenzuela,Hongbin Xu,Sarah Gelbard,Martin Bertrand,Gary W. Slater,Daniel Figeys,Stephen Fai,Steffany A. L. Bennett
#t2013
#cBioinformatics
#index3613913
#% 
#!
  
#*A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity.
#@Chengwei Lei,Jianhua Ruan
#t2013
#cBioinformatics
#index3613907
#% 
#!
  
#*NURBS: a database of experimental and predicted nuclear receptor binding sites of mouse.
#@Yaping Fang,Hui-Xin Liu,Ning Zhang,Grace L. Guo,Yu-Jui Yvonne Wan,Jianwen Fang
#t2013
#cBioinformatics
#index3613930
#% 
#!
  
#*A knowledge-based orientation potential for transcription factor-DNA docking.
#@Takako Takeda,Rosario I. Corona,Jun-tao Guo
#t2013
#cBioinformatics
#index3613925
#% 
#!
  
#*Non-local residue-residue contacts in proteins are more conserved than local ones.
#@Orly Noivirt-Brik,Gershon Hazan,Ron Unger,Yanay Ofran
#t2013
#cBioinformatics
#index3613945
#% 
#!
  
#*Bridging the scales: semantic integration of quantitative SBML in graphical multi-cellular models and simulations with EPISIM and COPASI.
#@Thomas Sütterlin,Christoph Kolb,Hartmut Dickhaus,Dirk J?ger,Niels Grabe
#t2013
#cBioinformatics
#index3613939
#% 
#!
  
#*Intron-centric estimation of alternative splicing from RNA-seq data.
#@Dmitri D. Pervouchine,David G. Knowles,Roderic Guigó
#t2013
#cBioinformatics
#index3613901
#% 
#!
  
#*Defining and predicting structurally conserved regions in protein superfamilies.
#@Ivan K. Huang,Jimin Pei,Nick V. Grishin
#t2013
#cBioinformatics
#index3613929
#% 
#!
  
#*ECOH: An Enzyme Commission number predictor using mutual information and a support vector machine.
#@Yoshihiko Matsuta,Masahiro Ito,Yukako Tohsato
#t2013
#cBioinformatics
#index3613918
#% 
#!
  
#*PTID: an integrated web resource and computational tool for agrochemical discovery.
#@Jiayu Gong,Xiaofeng Liu,Xianwen Cao,Yanyan Diao,Daqi Gao,Honglin Li,Xuhong Qian
#t2013
#cBioinformatics
#index3613904
#% 
#!
  
#*READSCAN: a fast and scalable pathogen discovery program with accurate genome relative abundance estimation.
#@Raeece Naeem,Mamoon Rashid,Arnab Pain
#t2013
#cBioinformatics
#index3613947
#% 
#!
  
#*Non-redundant compendium of human ncRNA genes in GeneCards.
#@Frida Belinky,Iris Bahir,Gil Stelzer,Shahar Zimmerman,Naomi Rosen,Noam Nativ,Irina Dalah,Tsippi Iny Stein,Noa Rappaport,Toutai Mituyama,Marilyn Safran,Doron Lancet
#t2013
#cBioinformatics
#index3613944
#% 
#!
  
#*DoseSim: a tool for pharmacokinetic/pharmacodynamic analysis and dose reconstruction.
#@Brad Reisfeld,Jaime H. Ivy,Michael A. Lyons,Jesse M. Wright,Justin L. Rogers,Arthur N. Mayeno
#t2013
#cBioinformatics
#index3613915
#% 
#!
  
#*SM2miR: a database of the experimentally validated small molecules' effects on microRNA expression.
#@Xinyi Liu,Shuyuan Wang,Fanlin Meng,Jizhe Wang,Yan Zhang,Enyu Dai,Xuexin Yu,Xia Li,Wei Jiang
#t2013
#cBioinformatics
#index3613943
#% 
#!
  
#*A system for exact and approximate genetic linkage analysis of SNP data in large pedigrees.
#@Mark Silberstein,Omer Weissbrod,Lars Otten,Anna Tzemach,Andrei Anisenia,Oren Shtark,Dvir Tuberg,Eddie Galfrin,Irena Gannon,Adel Shalata,Zvi U. Borochowitz,Rina Dechter,Elizabeth Thompson,Dan Geiger
#t2013
#cBioinformatics
#index3613948
#% 
#!
  
#*An empirical Bayes approach for analysis of diverse periodic trends in time-course gene expression data.
#@Mehmet Kocak,E. Olusegun George,Saumyadipta Pyne,Stanley Pounds
#t2013
#cBioinformatics
#index3613914
#% 
#!
  
#*minerva and minepy: a C engine for the MINE suite and its R, Python and MATLAB wrappers.
#@Davide Albanese,Michele Filosi,Roberto Visintainer,Samantha Riccadonna,Giuseppe Jurman,Cesare Furlanello
#t2013
#cBioinformatics
#index3613928
#% 
#!
  
#*SRmapper: a fast and sensitive genome-hashing alignment tool.
#@Paul M. Gontarz,Jennifer Berger,Chung F. Wong
#t2013
#cBioinformatics
#index3613900
#% 
#!
  
#*Largenet2: an object-oriented programming library for simulating large adaptive networks.
#@Gerd Zschaler,Thilo Gross
#t2013
#cBioinformatics
#index3613941
#% 
#!
  
#*A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.
#@Andrew E. Teschendorff,Francesco Marabita,Matthias Lechner,Thomas Bartlett,Jesper Tegnér,David Gomez-Cabrero,Stephan Beck
#t2013
#cBioinformatics
#index3613919
#% 
#!
  
#*DOOSS: a tool for visual analysis of data overlaid on secondary structures.
#@Michael Golden,Darren Martin
#t2013
#cBioinformatics
#index3613926
#% 
#!
  
#*Computational modelling of LY303511 and TRAIL-induced apoptosis suggests dynamic regulation of cFLIP.
#@Yuan Shi,Gregory Mellier,Sinong Huang,Jacob White,Shazib Pervaiz,Lisa Tucker-Kellogg
#t2013
#cBioinformatics
#index3613940
#% 
#!
  
#*mzMatch-ISO: an R tool for the annotation and relative quantification of isotope-labelled mass spectrometry data.
#@Achuthanunni Chokkathukalam,Andris Jankevics,Darren J. Creek,Fiona Achcar,Michael P. Barrett,Rainer Breitling
#t2013
#cBioinformatics
#index3613917
#% 
#!
  
#*Scribl: an HTML5 Canvas-based graphics library for visualizing genomic data over the web.
#@Chase A. Miller,Jon Anthony,Michelle M. Meyer,Gabor Marth
#t2013
#cBioinformatics
#index3613942
#% 
#!
  
#*BroadPeak: a novel algorithm for identifying broad peaks in diffuse ChIP-seq datasets.
#@Jianrong Wang,Victoria V. Lunyak,I. King Jordan
#t2013
#cBioinformatics
#index3648229
#% 
#!
  
#*MaSC: mappability-sensitive cross-correlation for estimating mean fragment length of single-end short-read sequencing data.
#@Parameswaran Ramachandran,Gareth A. Palidwor,Christopher J. Porter,Theodore J. Perkins
#t2013
#cBioinformatics
#index3648217
#% 
#!
  
#*Predicting protein β-sheet contacts using a maximum entropy-based correlated mutation measure.
#@Nikolas S. Burkoff,Csilla Várnai,David L. Wild
#t2013
#cBioinformatics
#index3648220
#% 
#!
  
#*CluePedia Cytoscape plugin: pathway insights using integrated experimental and data.
#@Gabriela Bindea,Jér?me Galon,Bernhard Mlecnik
#t2013
#cBioinformatics
#index3648239
#% 
#!
  
#*Sparsely correlated hidden Markov models with application to genome-wide location studies.
#@Hyungwon Choi,Damian Fermin,Alexey I. Nesvizhskii,Debashis Ghosh,Zhaohui S. Qin
#t2013
#cBioinformatics
#index3648238
#% 
#!
  
#*identification of oncogenic potential of fyn-related kinase in hepatocellular carcinoma.
#@Jia-Shing Chen,Wei-Shiang Hung,Hsiang-Han Chan,Shaw-Jenq Tsai,H. Sunny Sun
#t2013
#cBioinformatics
#index3648211
#% 
#!
  
#*Disease-gene discovery by integration of 3D gene expression and transcription factor binding affinities.
#@Rosario M. Piro,Ivan Molineris,Ferdinando Di Cunto,Roland Eils,Rainer K?nig
#t2013
#cBioinformatics
#index3648248
#% 
#!
  
#*RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface.
#@Markus S. Schr?der,Daniel Gusenleitner,John Quackenbush,Aedín C. Culhane,Benjamin Haibe-Kains
#t2013
#cBioinformatics
#index3648235
#% 
#!
  
#*Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine.
#@Niclas Thomas,James Heather,Wilfred Ndifon,John Shawe-Taylor,Benjamin Chain
#t2013
#cBioinformatics
#index3648209
#% 
#!
  
#*OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets.
#@Eamonn Maguire,Alejandra González Beltrán,Patricia L. Whetzel,Susanna-Assunta Sansone,Philippe Rocca-Serra
#t2013
#cBioinformatics
#index3648237
#% 
#!
  
#*ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies.
#@Scott C. Clark,Rob Egan,Peter I. Frazier,Zhong Wang
#t2013
#cBioinformatics
#index3648247
#% 
#!
  
#*Detecting and understanding genetic and structural features in HIV-1 B subtype V3 underlying HIV-1 co-receptor usage.
#@Mengjie Chen,Valentina Svicher,Anna Artese,Giosuè Costa,Claudia Alteri,Francesco Ortuso,Lucia Parrotta,Yang Liu,Chang Liu,Carlo-Federico Perno,Stefano Alcaro,Jing Zhang
#t2013
#cBioinformatics
#index3648240
#% 
#!
  
#*NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets.
#@Marcus R. Breese,Yunlong Liu
#t2013
#cBioinformatics
#index3648224
#% 
#!
  
#*A coherent feedforward loop design principle to sustain robustness of biological networks.
#@Duc-Hau Le,Yung-Keun Kwon
#t2013
#cBioinformatics
#index3648210
#% 
#!
  
#*Ultranet: efficient solver for the sparse inverse covariance selection problem in gene network modeling.
#@Linnea J?rvstr?t,Mikael Johansson,Urban Gullberg,Bj?rn Nilsson
#t2013
#cBioinformatics
#index3648215
#% 
#!
  
#*Fast alignment and comparison of RNA structures.
#@Tim Wiegels,Stefan Bienert,Andrew E. Torda
#t2013
#cBioinformatics
#index3648227
#% 
#!
  
#*APoc: large-scale identification of similar protein pockets.
#@Mu Gao,Jeffrey Skolnick
#t2013
#cBioinformatics
#index3648245
#% 
#!
  
#*Searching for virus phylotypes.
#@Fran?ois Chevenet,Matthieu Jung,Martine Peeters,Tulio de Oliveira,Olivier Gascuel
#t2013
#cBioinformatics
#index3648254
#% 
#!
  
#*Bellman's GAP - a language and compiler for dynamic programming in sequence analysis.
#@Georg Sauthoff,Mathias M?hl,Stefan Janssen,Robert Giegerich
#t2013
#cBioinformatics
#index3648232
#% 
#!
  
#*Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.
#@Andrew McDavid,Greg Finak,Pratip K. Chattopadhyay,Maria Dominguez,Laurie Lamoreaux,Steven S. Ma,Mario Roederer,Raphael Gottardo
#t2013
#cBioinformatics
#index3648230
#% 
#!
  
#*GeStoDifferent: a Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process.
#@Marco Antoniotti,Gary D. Bader,Giulio Caravagna,Silvia Crippa,Alex Graudenzi,Giancarlo Mauri
#t2013
#cBioinformatics
#index3648218
#% 
#!
  
#*Assessing identity, redundancy and confounds in Gene Ontology annotations over time.
#@Jesse Gillis,Paul Pavlidis
#t2013
#cBioinformatics
#index3648246
#% 
#!
  
#*SIBER: systematic identification of bimodally expressed genes using RNAseq data.
#@Pan Tong,Yong Chen,Xiao Su,Kevin R. Coombes
#t2013
#cBioinformatics
#index3648253
#% 
#!
  
#*Graphlet-based measures are suitable for biological network comparison.
#@Wayne Hayes,Kai Sun,Natasa Przulj
#t2013
#cBioinformatics
#index3648207
#% 
#!
  
#*KEGGParser: parsing and editing KEGG pathway maps in Matlab.
#@Arsen Arakelyan,Lilit Nersisyan
#t2013
#cBioinformatics
#index3648206
#% 
#!
  
#*Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression.
#@Michele A. Busby,Chip Stewart,Chase A. Miller,Krzysztof R. Grzeda,Gabor T. Marth
#t2013
#cBioinformatics
#index3648208
#% 
#!
  
#*rBiopaxParser - an R package to parse, modify and visualize BioPAX data.
#@Frank Kramer,Michaela Bayerlová,Florian Klemm,Annalen Bleckmann,Tim Bei?barth
#t2013
#cBioinformatics
#index3648231
#% 
#!
  
#*The product of C9orf72, a gene strongly implicated in neurodegeneration, is structurally related to DENN Rab-GEFs.
#@Timothy P. Levine,Rachel D. Daniels,Alberto T. Gatta,Louise H. Wong,Matthew J. Hayes
#t2013
#cBioinformatics
#index3648226
#% 
#!
  
#*gKaKs: the pipeline for genome-level Ka/Ks calculation.
#@Chengjun Zhang,Jun Wang,Manyuan Long,Chuanzhu Fan
#t2013
#cBioinformatics
#index3648221
#% 
#!
  
#*SCARPA: scaffolding reads with practical algorithms.
#@Nilgun Donmez,Michael Brudno
#t2013
#cBioinformatics
#index3648249
#% 
#!
  
#*ADAPT-NMR Enhancer: complete package for reduced dimensionality in protein NMR spectroscopy.
#@Woonghee Lee,Arash Bahrami,John L. Markley
#t2013
#cBioinformatics
#index3648243
#% 
#!
  
#*HitWalker: variant prioritization for personalized functional cancer genomics.
#@Daniel Bottomly,Beth Wilmot,Jeffrey W. Tyner,Christopher A. Eide,Marc M. Loriaux,Brian J. Druker,Shannon K. McWeeney
#t2013
#cBioinformatics
#index3648252
#% 
#!
  
#*StatAlign 2.0: combining statistical alignment with RNA secondary structure prediction.
#@Preeti Arunapuram,Ingolfur Edvardsson,Michael Golden,James W. J. Anderson,ádám Novák,Zsuzsanna Sük?sd,Jotun Hein
#t2013
#cBioinformatics
#index3648216
#% 
#!
  
#*Grape RNA-Seq analysis pipeline environment.
#@David G. Knowles,Maik R?der,Angelika Merkel,Roderic Guigó
#t2013
#cBioinformatics
#index3648223
#% 
#!
  
#*RS-WebPredictor: a server for predicting CYP-mediated sites of metabolism on drug-like molecules.
#@Jed Zaretzki,Charles Bergeron,Tao-wei Huang,Patrik Rydberg,S. Joshua Swamidass,Curt M. Breneman
#t2013
#cBioinformatics
#index3648244
#% 
#!
  
#*CePa: an R package for finding significant pathways weighted by multiple network centralities.
#@Zuguang Gu,Jin Wang
#t2013
#cBioinformatics
#index3648251
#% 
#!
  
#*SwiftLink: parallel MCMC linkage analysis using multicore CPU and GPU.
#@Alan Medlar,Dorota Glowacka,Horia Stanescu,Kevin Bryson,Robert Kleta
#t2013
#cBioinformatics
#index3648234
#% 
#!
  
#*A comprehensive SNP and indel imputability database.
#@Qing Duan,Eric Yi Liu,Damien C. Croteau-Chonka,Karen L. Mohlke,Yun Li
#t2013
#cBioinformatics
#index3648213
#% 
#!
  
#*InCroMAP: integrated analysis of cross-platform microarray and pathway data.
#@Clemens Wrzodek,Johannes Eichner,Finja Büchel,Andreas Zell
#t2013
#cBioinformatics
#index3648250
#% 
#!
  
#*CRAVAT: cancer-related analysis of variants toolkit.
#@Christopher Douville,Hannah Carter,Rick Kim,Noushin Niknafs,Mark Diekhans,Peter D. Stenson,David N. Cooper,Michael C. Ryan,Rachel Karchin
#t2013
#cBioinformatics
#index3648228
#% 
#!
  
#*BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes.
#@Castrense Savojardo,Piero Fariselli,Rita Casadio
#t2013
#cBioinformatics
#index3648214
#% 
#!
  
#*DSK: -mer counting with very low memory usage.
#@Guillaume Rizk,Dominique Lavenier,Rayan Chikhi
#t2013
#cBioinformatics
#index3648242
#% 
#!
  
#*Reconciling differential gene expression data with molecular interaction networks.
#@Christopher L. Poirel,Ahsanur Rahman,Richard R. Rodrigues,Arjun Krishnan,Jacqueline R. Addesa,T. M. Murali
#t2013
#cBioinformatics
#index3648219
#% 
#!
  
#*ChEMBLSpace - a graphical explorer of the chemogenomic space covered by the ChEMBL database.
#@Nikolas Fechner,George Papadatos,David Evans,John Richard Morphy,Suzanne Clare Brewerton,David Thorner,Michael Bodkin
#t2013
#cBioinformatics
#index3648236
#% 
#!
  
#*Systematic inference of highways of horizontal gene transfer in prokaryotes.
#@Mukul S. Bansal,Guy Banay,Timothy J. Harlow,J. Peter Gogarten,Ron Shamir
#t2013
#cBioinformatics
#index3648233
#% 
#!
  
#*ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution.
#@Jing-Woei Li,Raymond Wan,Chi-Shing Yu,Ngai Na Co,Nathalie Wong,Ting-Fung Chan
#t2013
#cBioinformatics
#index3648222
#% 
#!
  
#*miRCancer: a microRNA-cancer association database constructed by text mining on literature.
#@Boya Xie,Qin Ding,Hongjin Han,Di Wu
#t2013
#cBioinformatics
#index3648225
#% 
#!
  
#*SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology.
#@Richard Adams,Allan Clark,Azusa Yamaguchi,Neil Hanlon,Nikos Tsorman,Shakir Ali,Galina Lebedeva,Alexey Goltsov,Anatoly A. Sorokin,Ozgur E. Akman,Carl Troein,Andrew J. Millar,Igor Goryanin,Stephen Gilmore
#t2013
#cBioinformatics
#index3648212
#% 
#!
  
#*A system for exact and approximate genetic linkage analysis of SNP data in large pedigrees.
#@Mark Silberstein,Omer Weissbrod,Lars Otten,Anna Tzemach,Andrei Anisenia,Oren Shtark,Dvir Tuberg,Eddie Galfrin,Irena Gannon,Adel Shalata,Zvi U. Borochowitz,Rina Dechter,Elizabeth Thompson,Dan Geiger
#t2013
#cBioinformatics
#index3648241
#% 
#!
  
#*Evolutionary sequence analysis of complete eukaryote genomes.
#@Jaime E. Blair,Prachi Shah,S. Blair Hedges
#t2005
#cBMC Bioinformatics
#index768349
#% 
#!
  
#*Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the genome: the fluffy-tail test.
#@Irina I. Abnizova,Rene te Boekhorst,Klaudia Walter,Walter R. Gilks
#t2005
#cBMC Bioinformatics
#index768350
#% 
#!
  
#*GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA.
#@Robert G. Beiko,Robert L. Charlebois
#t2005
#cBMC Bioinformatics
#index768351
#% 
#!
  
#*Evaluation of gene importance in microarray data based upon probability of selection.
#@Li M. Fu,Casey S. Fu-Liu
#t2005
#cBMC Bioinformatics
#index768352
#% 
#!
  
#*Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks.
#@David Adalsteinsson,David McMillen,Timothy C. Elston
#t2004
#cBMC Bioinformatics
#index768353
#% 
#!
  
#*Statistical modeling of biomedical corpora: mining the Caenorhabditis Genetic Center Bibliography for genes related to life span.
#@David M. Blei,K. Franks,Michael I. Jordan,I. Saira Mian
#t2006
#cBMC Bioinformatics
#index768354
#% 
#!
  
#*Speeding disease gene discovery by sequence based candidate prioritization.
#@Euan A. Adie,Richard R. Adams,Kathryn L. Evans,David J. Porteous,Ben S. Pickard
#t2005
#cBMC Bioinformatics
#index768355
#% 
#!
  
#*Selection of antisense oligonucleotides based on multiple predicted target mRNA structures.
#@Xiaochen Bo,Shaoke Lou,Daochun Sun,Wenjie Shu,Jing Yang,Shengqi Wang
#t2006
#cBMC Bioinformatics
#index768356
#% 
#!
  
#*preAssemble: a tool for automatic sequencer trace data processing.
#@Alexei A. Adzhubei,Jon K. Laerdahl,Anna V. Vlasova
#t2006
#cBMC Bioinformatics
#index768357
#% 
#!
  
#*Re-annotation of genome microbial CoDing-Sequences: finding new genes and inaccurately annotated genes.
#@Stéphanie Bocs,Antoine Danchin,Claudine Médigue
#t2002
#cBMC Bioinformatics
#index768358
#% 
#!
  
#*Importing statistical measures into Artemis enhances gene identification in the genome project.
#@Gautam Aggarwal,E. A. Worthey,Paul D. McDonagh,Peter J. Myler
#t2003
#cBMC Bioinformatics
#index768359
#% 
#!
  
#*Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures.
#@Mikael Bodén,Zheng Yuan,Timothy L. Bailey
#t2006
#cBMC Bioinformatics
#index768360
#% 
#!
  
#*Graph-representation of oxidative folding pathways.
#@Vilmos Ágoston,Masa Cemazar,László Kaján,Sándor Pongor
#t2005
#cBMC Bioinformatics
#index768361
#% 
#!
  
#*Correlation analysis of two-dimensional gel electrophoretic protein patterns and biological variables.
#@Werner W. V. B. Van Belle,Nina N. A. Anensen,Ingvild I. H. Haaland,Oystein O. B. Bruserud,Kjell-Arild K. A. H. Hogda,Bjorn B. T. G. Tore Gjertsen
#t2006
#cBMC Bioinformatics
#index768362
#% 
#!
  
#*In search of functional association from time-series microarray data based on the change trend and level of gene expression.
#@Feng He,An-Ping Zeng
#t2006
#cBMC Bioinformatics
#index768363
#% 
#!
  
#*Robust detection of periodic time series measured from biological systems.
#@Miika Ahdesmäki,Harri Lähdesmäki,Ronald K. Pearson,Heikki Huttunen,Olli Yli-Harja
#t2005
#cBMC Bioinformatics
#index768364
#% 
#!
  
#*Extractor for ESI quadrupole TOF tandem MS data enabled for high throughput batch processing.
#@Andreas M. Boehm,Robert P. Galvin,Albert Sickmann
#t2004
#cBMC Bioinformatics
#index768365
#% 
#!
  
#*: Database and tool for solvent accessibility representation in proteins.
#@Shandar Ahmad,M. Michael Gromiha,Hamed Fawareh,Akinori Sarai
#t2004
#cBMC Bioinformatics
#index768366
#% 
#!
  
#*SIMMAP: Stochastic character mapping of discrete traits on phylogenies.
#@Jonathan P. Bollback
#t2006
#cBMC Bioinformatics
#index768367
#% 
#!
  
#*PSSM-based prediction of DNA binding sites in proteins.
#@Shandar Ahmad,Akinori Sarai
#t2005
#cBMC Bioinformatics
#index768368
#% 
#!
  
#*Prediction of twin-arginine signal peptides.
#@Jannick Dyrløv Bendtsen,Henrik Nielsen,David Widdick,Tracy Palmer,Søren Brunak
#t2005
#cBMC Bioinformatics
#index768369
#% 
#!
  
#*CoPub Mapper: mining MEDLINE based on search term co-publication.
#@Blaise T. F. Alako,Antoine Veldhoven,Sjozef van Baal,Rob Jelier,Stefan Verhoeven,Ton Rullmann,Jan Polman,Guido Jenster
#t2005
#cBMC Bioinformatics
#index768370
#% 
#!
  
#*Visualisation and graph-theoretic analysis of a large-scale protein structural interactome.
#@Dan M. Bolser,Panos Dafas,Richard Harrington,Jong Park,Michael Schroeder
#t2003
#cBMC Bioinformatics
#index768371
#% 
#!
  
#*SIMAGE: simulation of DNA-microarray gene expression data.
#@Casper J. Albers,Ritsert C. Jansen,Jan Kok,Oscar P. Kuipers,Sacha A. F. T. van Hijum
#t2006
#cBMC Bioinformatics
#index768372
#% 
#!
  
#*ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences.
#@Paola Bonizzoni,Raffaella Rizzi,Graziano Pesole
#t2005
#cBMC Bioinformatics
#index768373
#% 
#!
  
#*Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures.
#@Vadim Alexandrov,Mark Gerstein
#t2004
#cBMC Bioinformatics
#index768374
#% 
#!
  
#*Methodological study of affine transformations of gene expression data with proposed robust non-parametric multi-dimensional normalization method.
#@Henrik Bengtsson,Ola Hössjer
#t2006
#cBMC Bioinformatics
#index768375
#% 
#!
  
#*Utilization of two sample -test statistics from redundant probe sets to evaluate different probe set algorithms in GeneChip studies.
#@Zihua Hu,Gail R. Willsky
#t2006
#cBMC Bioinformatics
#index768376
#% 
#!
  
#*PedGenie: an analysis approach for genetic association testing in extended pedigrees and genealogies of arbitrary size.
#@Kristina Allen-Brady,Jathine Wong,Nicola J. Camp
#t2006
#cBMC Bioinformatics
#index768377
#% 
#!
  
#*Full cyclic coordinate descent: solving the protein loop closure problem in C space.
#@Wouter Boomsma,Thomas Hamelryck
#t2005
#cBMC Bioinformatics
#index768378
#% 
#!
  
#*Quantifying the relationship between co-expression, co-regulation and gene function.
#@Dominic J. Allocco,Isaac S. Kohane,Atul J. Butte
#t2004
#cBMC Bioinformatics
#index768379
#% 
#!
  
#*A multistep bioinformatic approach detects putative regulatory elements in gene promoters.
#@Stefania Bortoluzzi,Alessandro Coppe,Andrea Bisognin,Cinzia Pizzi,Gian Antonio Danieli
#t2005
#cBMC Bioinformatics
#index768380
#% 
#!
  
#*Universal sequence map (USM) of arbitrary discrete sequences.
#@Jonas S. Almeida,Susana Vinga
#t2002
#cBMC Bioinformatics
#index768381
#% 
#!
  
#*Microarray image analysis: background estimation using quantile and morphological filters.
#@Anders Bengtsson,Henrik Bengtsson
#t2006
#cBMC Bioinformatics
#index768382
#% 
#!
  
#*The distance-profile representation and its application to detection of distantly related protein families.
#@Chin-Jen Ku,Golan Yona
#t2005
#cBMC Bioinformatics
#index768383
#% 
#!
  
#*Development and implementation of an algorithm for detection of protein complexes in large interaction networks.
#@Md. Altaf-Ul-Amin,Yoko Shinbo,Kenji Mihara,Ken Kurokawa,Shigehiko Kanaya
#t2006
#cBMC Bioinformatics
#index768384
#% 
#!
  
#*Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs.
#@Rehannah H. A. Borup,Stefano Toppo,Yi-Wen Chen,Tanya M. Teslovich,Gerolamo Lanfranchi,Giorgio Valle,Eric P. Hoffman
#t2002
#cBMC Bioinformatics
#index768385
#% 
#!
  
#*Bayesian detection of periodic mRNA time profiles without use of training examples.
#@Claes R. Andersson,Anders Isaksson,Mats G. Gustafsson
#t2006
#cBMC Bioinformatics
#index768386
#% 
#!
  
#*Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding proteins.
#@Michael E. Bradley,Steven A. Benner
#t2006
#cBMC Bioinformatics
#index768387
#% 
#!
  
#*GENOMEMASKER package for designing unique genomic PCR primers.
#@Reidar Andreson,Eric Reppo,Lauris Kaplinski,Maido Remm
#t2006
#cBMC Bioinformatics
#index768388
#% 
#!
  
#*Computer aided analysis of additional chromosome aberrations in Philadelphia chromosome positive acute lymphoblastic leukaemia using a simplified computer readable cytogenetic notation.
#@Jutta Bradtke,Harald Balz,Christa Fonatsch,Barbara Heinze,Anna Jauch,Brigitte Mohr,Claudia Schoch,Harald Rieder
#t2003
#cBMC Bioinformatics
#index768389
#% 
#!
  
#*Detection of transposable elements by their compositional bias.
#@Olivier Andrieu,Anna-Sophie Fiston,Dominique Anxolabéhère,Hadi Quesneville
#t2004
#cBMC Bioinformatics
#index768390
#% 
#!
  
#*Calibration and assessment of channel-specific biases in microarray data with extended dynamical range.
#@Henrik Bengtsson,Göran Jönsson,Johan Vallon-Christersson
#t2004
#cBMC Bioinformatics
#index768391
#% 
#!
  
#*Predicting functional sites with an automated algorithm suitable for heterogeneous datasets.
#@David La,Dennis R. Livesay
#t2005
#cBMC Bioinformatics
#index768392
#% 
#!
  
#*PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information.
#@Florent Angly,Beltran Rodriguez-Brito,David Bangor,Pat McNairnie,Mya Breitbart,Peter Salamon,Ben Felts,James Nulton,Joseph Mahaffy,Forest Rohwer
#t2005
#cBMC Bioinformatics
#index768393
#% 
#!
  
#*Automatic discovery of cross-family sequence features associated with protein function.
#@Markus Brameier,Josien Haan,Andrea Krings,Robert M. MacCallum
#t2006
#cBMC Bioinformatics
#index768394
#% 
#!
  
#*Incidence of "quasi-ditags" in catalogs generated by Serial Analysis of Gene Expression (SAGE).
#@Sergey V. Anisimov,Alexei A. Sharov
#t2004
#cBMC Bioinformatics
#index768395
#% 
#!
  
#*Vector analysis as a fast and easy method to compare gene expression responses between different experimental backgrounds.
#@Rainer Breitling,Patrick Armengaud,Anna Amtmann
#t2005
#cBMC Bioinformatics
#index768396
#% 
#!
  
#*Identification of consensus RNA secondary structures using suffix arrays.
#@Mohammad Anwar,Truong Nguyen,Marcel Turcotte
#t2006
#cBMC Bioinformatics
#index768397
#% 
#!
  
#*Iterative Group Analysis (iGA): A simple tool to enhance sensitivity and facilitate interpretation of microarray experiments.
#@Rainer Breitling,Anna Amtmann,Pawel Herzyk
#t2004
#cBMC Bioinformatics
#index768398
#% 
#!
  
#*GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes.
#@Kazuharu Arakawa,Yohei Yamada,Kosaku Shinoda,Yoichi Nakayama,Masaru Tomita
#t2006
#cBMC Bioinformatics
#index768399
#% 
#!
  
#*Graph-based iterative Group Analysis enhances microarray interpretation.
#@Rainer Breitling,Anna Amtmann,Pawel Herzyk
#t2004
#cBMC Bioinformatics
#index768400
#% 
#!
  
#*Graphical technique for identifying a monotonic variance stabilizing transformation for absolute gene intensity signals.
#@Kellie J. Archer,Catherine I. Dumur,Viswanathan Ramakrishnan
#t2004
#cBMC Bioinformatics
#index768401
#% 
#!
  
#*Comparing functional annotation analyses with Catmap.
#@Thomas Breslin,Patrik Edén,Morten Krogh
#t2004
#cBMC Bioinformatics
#index768402
#% 
#!
  
#*ArrayQuest: a web resource for the analysis of DNA microarray data.
#@Gary L. Argraves,Saurin D. Jani,Jeremy L. Barth,W. Scott Argraves
#t2005
#cBMC Bioinformatics
#index768403
#% 
#!
  
#*Signal transduction pathway profiling of individual tumor samples.
#@Thomas Breslin,Morten Krogh,Carsten Peterson,Carl Troein
#t2005
#cBMC Bioinformatics
#index768404
#% 
#!
  
#*Noise filtering and nonparametric analysis of microarray data underscores discriminating markers of oral, prostate, lung, ovarian and breast cancer.
#@Virginie M. Aris,Michael J. Cody,Jeff Cheng,James J. Dermody,Patricia Soteropoulos,Michael Recce,Peter P. Tolias
#t2004
#cBMC Bioinformatics
#index768405
#% 
#!
  
#*Influence of microarrays experiments missing values on the stability of gene groups by hierarchical clustering.
#@Alexandre G. de Brevern,Serge A. Hazout,Alain Malpertuy
#t2004
#cBMC Bioinformatics
#index768406
#% 
#!
  
#*UVPAR: fast detection of functional shifts in duplicate genes.
#@Vicente Arnau,Miguel Gallach,J. Ignasi Lucas,Ignacio Marín
#t2006
#cBMC Bioinformatics
#index768407
#% 
#!
  
#*Cyclic nucleotide binding proteins in the and genomes.
#@Dave Bridges,Marie E. Fraser,Greg B. G. Moorhead
#t2005
#cBMC Bioinformatics
#index768408
#% 
#!
  
#*DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions.
#@Erik Arner,Martti T. Tammi,Anh-Nhi Tran,Ellen Kindlund,Björn Andersson
#t2006
#cBMC Bioinformatics
#index768409
#% 
#!
  
#*Oligomeric protein structure networks: insights into protein-protein interactions.
#@K. V. Brinda,Saraswathi Vishveshwara
#t2005
#cBMC Bioinformatics
#index768410
#% 
#!
  
#*Determination of the differentially expressed genes in microarray experiments using local FDR.
#@Julie Aubert,Avner Bar-Hen,Jean-Jacques Daudin,Stéphane Robin
#t2004
#cBMC Bioinformatics
#index768411
#% 
#!
  
#*Protein kinases associated with the yeast phosphoproteome.
#@Ross I. Brinkworth,Alan L. Munn,Bostjan Kobe
#t2006
#cBMC Bioinformatics
#index768412
#% 
#!
  
#*Correction: Determination of the differentially expressed genes in microarray experiments using local FDR.
#@Julie Aubert,Avner Bar-Hen,Jean-Jacques Daudin,Stéphane Robin
#t2005
#cBMC Bioinformatics
#index768413
#% 
#!
  
#*A comparative review of estimates of the proportion unchanged genes and the false discovery rate.
#@Per Broberg
#t2005
#cBMC Bioinformatics
#index768414
#% 
#!
  
#*Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets.
#@Marc Aubry,Annabelle Monnier,Celine Chicault,Marie de Tayrac,Marie-Dominique Galibert,Anita Burgun,Jean Mosser
#t2006
#cBMC Bioinformatics
#index768415
#% 
#!
  
#*Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments.
#@Ryan Brodie,Alex J. Smith,Rachel L. Roper,Vasily Tcherepanov,Chris Upton
#t2004
#cBMC Bioinformatics
#index768416
#% 
#!
  
#*SimArray: a user-friendly and user-configurable microarray design tool.
#@Richard P. Auburn,Roslin R. Russell,Bettina Fischer,Lisa A. Meadows,Santiago Sevillano Matilla,Steven Russell
#t2006
#cBMC Bioinformatics
#index768417
#% 
#!
  
#*Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison.
#@C. Titus Brown,Yuan Xie,Eric H. Davidson,R. Andrew Cameron
#t2005
#cBMC Bioinformatics
#index768418
#% 
#!
  
#*Caryoscope: An Open Source Java application for viewing microarray data in a genomic context.
#@Ihab A. B. Awad,Christian A. Rees,Tina Hernandez-Boussard,Catherine A. Ball,Gavin Sherlock
#t2004
#cBMC Bioinformatics
#index768419
#% 
#!
  
#*Fast and sensitive multiple alignment of large genomic sequences.
#@Michael Brudno,Michael Chapman,Berthold Göttgens,Serafim Batzoglou,Burkhard Morgenstern
#t2003
#cBMC Bioinformatics
#index768420
#% 
#!
  
#*Protein secondary structure prediction for a single-sequence using hidden semi-Markov models.
#@Zafer Aydin,Yucel Altunbasak,Mark Borodovsky
#t2006
#cBMC Bioinformatics
#index768421
#% 
#!
  
#*Clustering proteins from interaction networks for the prediction of cellular functions.
#@Christine Brun,Carl Herrmann,Alain Guénoche
#t2004
#cBMC Bioinformatics
#index768422
#% 
#!
  
#*Genomic data sampling and its effect on classification performance assessment.
#@Francisco Azuaje
#t2003
#cBMC Bioinformatics
#index768423
#% 
#!
  
#*FOUNTAIN: A JAVA open-source package to assist large sequencing projects.
#@Jean-Marie Buerstedde,Florian Prill
#t2001
#cBMC Bioinformatics
#index768424
#% 
#!
  
#*Non-linear mapping for exploratory data analysis in functional genomics.
#@Francisco Azuaje,Haiying Wang,Alban Chesneau
#t2005
#cBMC Bioinformatics
#index768425
#% 
#!
  
#*Predicting population coverage of T-cell epitope-based diagnostics and vaccines.
#@Huynh-Hoa Bui,John Sidney,Kenny Dinh,Scott Southwood,Mark J. Newman,Alessandro Sette
#t2006
#cBMC Bioinformatics
#index768426
#% 
#!
  
#*An automated method for finding molecular complexes in large protein interaction networks.
#@Gary D. Bader,Christopher W. V. Hogue
#t2003
#cBMC Bioinformatics
#index768427
#% 
#!
  
#*mRNA: guanine-7 cap methyltransferases: identification of novel members of the family, evolutionary analysis, homology modeling, and analysis of sequence-structure-function relationships.
#@Janusz M. Bujnicki,Marcin Feder,Monika Radlinska,Leszek Rychlewski
#t2001
#cBMC Bioinformatics
#index768428
#% 
#!
  
#*AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysis.
#@Elarbi Badidi,Cristina deSousa,B. Franz Lang,Gertraud Burger
#t2003
#cBMC Bioinformatics
#index768429
#% 
#!
  
#*Optimized LOWESS normalization parameter selection for DNA microarray data.
#@John A. Berger,Sampsa Hautaniemi,Anna-Kaarina Järvinen,Henrik Edgren,Sanjit K. Mitra,Jaakko Astola
#t2004
#cBMC Bioinformatics
#index768430
#% 
#!
  
#*VKCDB: Voltage-gated potassium channel database.
#@Bin Li,Warren J. Gallin
#t2004
#cBMC Bioinformatics
#index768431
#% 
#!
  
#*Visualization and analysis of microarray and gene ontology data with treemaps.
#@Eric H. Baehrecke,Niem Dang,Ketan Babaria,Ben Shneiderman
#t2004
#cBMC Bioinformatics
#index768432
#% 
#!
  
#*RNA: (guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited - bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure.
#@Janusz M. Bujnicki,Leszek Rychlewski
#t2002
#cBMC Bioinformatics
#index768433
#% 
#!
  
#*Overdispersed logistic regression for SAGE: Modelling multiple groups and covariates.
#@Keith A. Baggerly,Li Deng,Jeffrey S. Morris,C. Marcelo Aldaz
#t2004
#cBMC Bioinformatics
#index768434
#% 
#!
  
#*SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms.
#@Tim Van den Bulcke,Koen Van Leemput,Bart Naudts,Piet van Remortel,Hongwu Ma,Alain Verschoren,Bart De Moor,Kathleen Marchal
#t2006
#cBMC Bioinformatics
#index768435
#% 
#!
  
#*Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.
#@Pantelis G. Bagos,Theodore Liakopoulos,Stavros J. Hamodrakas
#t2005
#cBMC Bioinformatics
#index768436
#% 
#!
  
#*Integrating partonomic hierarchies in anatomy ontologies.
#@Albert Burger,Duncan Davidson,Yiya Yang,Richard A. Baldock
#t2004
#cBMC Bioinformatics
#index768437
#% 
#!
  
#*Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins.
#@Pantelis G. Bagos,Theodore D. Liakopoulos,Stavros J. Hamodrakas
#t2006
#cBMC Bioinformatics
#index768438
#% 
#!
  
#*ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files.
#@Konrad Büssow,Steve Hoffmann,Volker Sievert
#t2002
#cBMC Bioinformatics
#index768439
#% 
#!
  
#*A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins.
#@Pantelis G. Bagos,Theodore Liakopoulos,Ioannis C. Spyropoulos,Stavros J. Hamodrakas
#t2004
#cBMC Bioinformatics
#index768440
#% 
#!
  
#*The tissue microarray data exchange specification: implementation by the Cooperative Prostate Cancer Tissue Resource.
#@Jules J. Berman,Milton Datta,Andre Kajdacsy-Balla,Jonathan Melamed,Jan Orenstein,Kevin Dobbin,Ashok Patel,Rajiv Dhir,Michael J. Becich
#t2004
#cBMC Bioinformatics
#index768441
#% 
#!
  
#*PathSys: integrating molecular interaction graphs for systems biology.
#@Michael Baitaluk,Xufei Qian,Shubhada Godbole,Alpan Raval,Animesh Ray,Amarnath Gupta
#t2006
#cBMC Bioinformatics
#index768442
#% 
#!
  
#*libcov: A C++ bioinformatic library to manipulate protein structures, sequence alignments and phylogeny.
#@Davin Butt,Andrew J. Roger,Christian Blouin
#t2005
#cBMC Bioinformatics
#index768443
#% 
#!
  
#*CGMIM: Automated text-mining of Online Mendelian Inheritance in Man (OMIM) to identify genetically-associated cancers and candidate genes.
#@Chris D. Bajdik,Byron Kuo,Shawn Rusaw,Steven Jones,Angela Brooks-Wilson
#t2005
#cBMC Bioinformatics
#index768444
#% 
#!
  
#*PyEvolve: a toolkit for statistical modelling of molecular evolution.
#@Andrew Butterfield,Vivek Vedagiri,Edward Lang,Cath Lawrence,Matthew J. Wakefield,Alexander Isaev,Gavin A. Huttley
#t2004
#cBMC Bioinformatics
#index768445
#% 
#!
  
#*Sources of variability and effect of experimental approach on expression profiling data interpretation.
#@Marina Bakay,Yi-Wen Chen,Rehannah H. A. Borup,Po Zhao,Kanneboyina Nagaraju,Eric P. Hoffman
#t2002
#cBMC Bioinformatics
#index768446
#% 
#!
  
#*MASQOT: a method for cDNA microarray spot quality control.
#@Max Bylesjö,Daniel Eriksson,Andreas Sjödin,Michael Sjöström,Stefan Jansson,Henrik Antti,Johan Trygg
#t2005
#cBMC Bioinformatics
#index768447
#% 
#!
  
#*MuTrack: a genome analysis system for large-scale mutagenesis in the mouse.
#@Erich J. Baker,Leslie Galloway,Barbara Jackson,Denise Schmoyer,Jay Snoddy
#t2004
#cBMC Bioinformatics
#index768448
#% 
#!
  
#*SeqX: a tool to detect, analyze and visualize residue co-locations in protein and nucleic acid structures.
#@Jan C. Biro,Gergely Fördös
#t2005
#cBMC Bioinformatics
#index768449
#% 
#!
  
#*Improving the scaling normalization for high-density oligonucleotide GeneChip expression microarrays.
#@Chao Lu
#t2004
#cBMC Bioinformatics
#index768450
#% 
#!
  
#*Correction of scaling mismatches in oligonucleotide microarray data.
#@Martino Barenco,Jaroslav Stark,Daniel Brewer,Daniela Tomescu,Robin Callard,Michael Hubank
#t2006
#cBMC Bioinformatics
#index768451
#% 
#!
  
#*Support Vector Machines for predicting protein structural class.
#@Yu-Dong Cai,Xiao-Jun Liu,Xue-biao Xu,Guo-Ping Zhou
#t2001
#cBMC Bioinformatics
#index768452
#% 
#!
  
#*Leveraging two-way probe-level block design for identifying differential gene expression with high-density oligonucleotide arrays.
#@Leah Barrera,Chris Benner,Yong-Chuan Tao,Elizabeth A. Winzeler,Yingyao Zhou
#t2004
#cBMC Bioinformatics
#index768453
#% 
#!
  
#*MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution.
#@James J. Cai,David K. Smith,Xuhua Xia,Kwok-yung Yuen
#t2005
#cBMC Bioinformatics
#index768454
#% 
#!
  
#*Network-level analysis of metabolic regulation in the human red blood cell using random sampling and singular value decomposition.
#@Christian L. Barrett,Nathan D. Price,Bernhard O. Palsson
#t2006
#cBMC Bioinformatics
#index768455
#% 
#!
  
#*MatGAT: An application that generates similarity/identity matrices using protein or DNA sequences.
#@James J. Campanella,Ledion Bitincka,John Smalley
#t2003
#cBMC Bioinformatics
#index768456
#% 
#!
  
#*MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences.
#@Harald Barsnes,Svein-Ole Mikalsen,Ingvar Eidhammer
#t2006
#cBMC Bioinformatics
#index768457
#% 
#!
  
#*Profiled support vector machines for antisense oligonucleotide efficacy prediction.
#@Gustavo Camps-Valls,Alistair M. Chalk,Antonio J. Serrano-López,José David Martín-Guerrero,Erik L. L. Sonnhammer
#t2004
#cBMC Bioinformatics
#index768458
#% 
#!
  
#*A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
#@Olivier Bastien,Philippe Ortet,Sylvaine Roy,Eric Maréchal
#t2005
#cBMC Bioinformatics
#index768459
#% 
#!
  
#*OrthoParaMap: Distinguishing orthologs from paralogs by integrating comparative genome data and gene phylogenies.
#@Steven B. Cannon,Nevin D. Young
#t2003
#cBMC Bioinformatics
#index768460
#% 
#!
  
#*The SGS3 protein involved in PTGS finds a family.
#@Alex Bateman
#t2002
#cBMC Bioinformatics
#index768461
#% 
#!
  
#*Information theory-based algorithm for prediction of PCR products with whole genomic sequences as templates.
#@Youfang Cao,Lianjie Wang,Kexue Xu,Chunhai Kou,Yulei Zhang,Guifang Wei,Junjian He,Yunfang Wang,Liping Zhao
#t2005
#cBMC Bioinformatics
#index768462
#% 
#!
  
#*The TROVE module: A common element in Telomerase, Ro and Vault ribonucleoproteins.
#@Alex Bateman,Valerie A. Kickhoefer
#t2003
#cBMC Bioinformatics
#index768463
#% 
#!
  
#*Prediction of protein structural class with Rough Sets.
#@Youfang Cao,Shi Liu,Lida Zhang,Jie Qin,Jiang Wang,Kexuan Tang
#t2006
#cBMC Bioinformatics
#index768464
#% 
#!
  
#*Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data.
#@Florent Baty,Michel P. Bihl,Guy Perrière,Aedín C. Culhane,Martin H. Brutsche
#t2005
#cBMC Bioinformatics
#index768465
#% 
#!
  
#*Frequent occurrence of recognition Site-like sequences in the restriction endonucleases.
#@Jan C. Biro,Josephine M. K. Biro
#t2004
#cBMC Bioinformatics
#index768466
#% 
#!
  
#*Quantifying robustness of biochemical network models.
#@Lan Ma,Pablo A. Iglesias
#t2002
#cBMC Bioinformatics
#index768467
#% 
#!
  
#*IMGT/GeneInfo: T cell receptor gamma TRG and delta TRD genes in database give access to all TR potential V(D)J recombinations.
#@Thierry-Pascal Baum,Vivien Hierle,Nicolas Pasqual,Fatena Bellahcene,Denys Chaume,Marie-Paule Lefranc,Evelyne Jouvin-Marche,Patrice-Noël Marche,Jacques Demongeot
#t2006
#cBMC Bioinformatics
#index768468
#% 
#!
  
#*The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.
#@Jamie J. Cannone,Sankar Subramanian,Murray N. Schnare,James R. Collett,Lisa M. D'Souza,Yushi Du,Brian Feng,Nan Lin,Lakshmi V. Madabusi,Kirsten M. Müller,Nupur Pande,Zhidi Shang,Nan Yu,Robin Ray Gutell
#t2002
#cBMC Bioinformatics
#index768469
#% 
#!
  
#*PubMatrix: a tool for multiplex literature mining.
#@Kevin G. Becker,Douglas A. Hosack,Glynn Dennis Jr.,Richard A. Lempicki,Tiffani J. Bright,Chris Cheadle,James Engel
#t2003
#cBMC Bioinformatics
#index768470
#% 
#!
  
#*Biclustering of gene expression data by non-smooth non-negative matrix factorization.
#@Pedro Carmona-Saez,Roberto D. Pascual-Marqui,Francisco Tirado,José María Carazo,Alberto D. Pascual-Montano
#t2006
#cBMC Bioinformatics
#index768471
#% 
#!
  
#*Metabolite coupling in genome-scale metabolic networks.
#@Scott A. Becker,Nathan D. Price,Bernhard O. Palsson
#t2006
#cBMC Bioinformatics
#index768472
#% 
#!
  
#*Integrated analysis of gene expression by association rules discovery.
#@Pedro Carmona-Saez,Monica Chagoyen,Andrés Rodríguez,Oswaldo Trelles,José María Carazo,Alberto D. Pascual-Montano
#t2006
#cBMC Bioinformatics
#index768473
#% 
#!
  
#*Development of an unbiased statistical method for the analysis of unigenic evolution.
#@Colleen D. Behrsin,Chris J. Brandl,David W. Litchfield,Brian H. Shilton,Lindi M. Wahl
#t2006
#cBMC Bioinformatics
#index768474
#% 
#!
  
#*Instance-based concept learning from multiclass DNA microarray data.
#@Daniel P. Berrar,Ian Bradbury,Werner Dubitzky
#t2006
#cBMC Bioinformatics
#index768475
#% 
#!
  
#*JLIN: A java based linkage disequilibrium plotter.
#@Kim W. Carter,Pamela A. McCaskie,Lyle J. Palmer
#t2006
#cBMC Bioinformatics
#index768476
#% 
#!
  
#*Amino acid empirical contact energy definitions for fold recognition in the space of contact maps.
#@Marco Berrera,Henriette Molinari,Federico Fogolari
#t2003
#cBMC Bioinformatics
#index768477
#% 
#!
  
#*Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.
#@Scott L. Carter,Aron C. Eklund,Brigham H. Mecham,Isaac S. Kohane,Zoltan Szallasi
#t2005
#cBMC Bioinformatics
#index768478
#% 
#!
  
#*Kangaroo - A pattern-matching program for biological sequences.
#@Doron Betel,Christopher W. V. Hogue
#t2002
#cBMC Bioinformatics
#index768479
#% 
#!
  
#*Squid - a simple bioinformatics grid.
#@Paulo C. Carvalho,Rafael V. Glória,Antonio Basílio de Miranda,Wim M. Degrave
#t2005
#cBMC Bioinformatics
#index768480
#% 
#!
  
#*PASS2: an automated database of protein alignments organised as structural superfamilies.
#@Anirban Bhaduri,Ganesan Pugalenthi,Ramanathan Sowdhamini
#t2004
#cBMC Bioinformatics
#index768481
#% 
#!
  
#*Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes.
#@Michele Caselle,Ferdinando Di Cunto,Paolo Provero
#t2002
#cBMC Bioinformatics
#index768482
#% 
#!
  
#*BIPAD: A web server for modeling bipartite sequence elements.
#@Chengpeng Bi,Peter K. Rogan
#t2006
#cBMC Bioinformatics
#index768483
#% 
#!
  
#*A high level interface to SCOP and ASTRAL implemented in Python.
#@James A. Casbon,Gavin E. Crooks,Mansoor A. S. Saqi
#t2006
#cBMC Bioinformatics
#index768484
#% 
#!
  
#*Determination of strongly overlapping signaling activity from microarray data.
#@Ghislain Bidaut,Karsten Suhre,Jean-Michel Claverie,Michael F. Ochs
#t2006
#cBMC Bioinformatics
#index768485
#% 
#!
  
#*Analysis of superfamily specific profile-profile recognition accuracy.
#@James A. Casbon,Mansoor A. S. Saqi
#t2004
#cBMC Bioinformatics
#index768486
#% 
#!
  
#*CisOrtho: A program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting.
#@Henry R. Bigelow,Adam S. Wenick,Allan Wong,Oliver Hobert
#t2004
#cBMC Bioinformatics
#index768487
#% 
#!
  
#*On single and multiple models of protein families for the detection of remote sequence relationships.
#@James A. Casbon,Mansoor A. S. Saqi
#t2006
#cBMC Bioinformatics
#index768488
#% 
#!
  
#*Probabilistic estimation of microarray data reliability and underlying gene expression.
#@Sven Bilke,Thomas Breslin,Mikael Sigvardsson
#t2003
#cBMC Bioinformatics
#index768489
#% 
#!
  
#*Detection of chromosomal regions showing differential gene expression in human skeletal muscle and in alveolar rhabdomyosarcoma.
#@Andrea Bisognin,Stefania Bortoluzzi,Gian Antonio Danieli
#t2004
#cBMC Bioinformatics
#index768490
#% 
#!
  
#*transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
#@Olaf R. P. Bininda-Emonds
#t2005
#cBMC Bioinformatics
#index768491
#% 
#!
  
#*MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa.
#@Domenico Catalano,Flavio Licciulli,Antonio Turi,Giorgio Grillo,Cecilia Saccone,Domenica D'Elia
#t2006
#cBMC Bioinformatics
#index768492
#% 
#!
  
#*BIOZON: a system for unification, management and analysis of heterogeneous biological data.
#@Aaron Birkland,Golan Yona
#t2006
#cBMC Bioinformatics
#index768493
#% 
#!
  
#*Poly: a quantitative analysis tool for simple sequence repeat (SSR) tracts in DNA.
#@Jeff W. Bizzaro,Kenneth A. Marx
#t2003
#cBMC Bioinformatics
#index768494
#% 
#!
  
#*The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction.
#@Jamie J. Cannone,Sankar Subramanian,Murray N. Schnare,James R. Collett,Lisa M. D'Souza,Yushi Du,Brian Feng,Nan Lin,Lakshmi V. Madabusi,Kirsten M. Müller,Nupur Pande,Zhidi Shang,Nan Yu,Robin Ray Gutell
#t2002
#cBMC Bioinformatics
#index768495
#% 
#!
  
#*Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator.
#@Alexander García Castro,Samuel Thoraval,Leyla Jael García-Castro,Mark A. Ragan
#t2005
#cBMC Bioinformatics
#index768496
#% 
#!
  
#*The Hotdog fold: wrapping up a superfamily of thioesterases and dehydratases.
#@Shane C. Dillon,Alex Bateman
#t2004
#cBMC Bioinformatics
#index768497
#% 
#!
  
#*GeneOrder3.0: Software for comparing the order of genes in pairs of small bacterial genomes.
#@Srikanth Celamkoti,Sashidhara Kundeti,Anjan Purkayastha,Raja Mazumder,Charles Buck,Donald Seto
#t2004
#cBMC Bioinformatics
#index768498
#% 
#!
  
#*Tandem machine learning for the identification of genes regulated by transcription factors.
#@Deendayal Dinakarpandian,Venetia Raheja,Saumil Mehta,Erin G. Schuetz,Peter K. Rogan
#t2005
#cBMC Bioinformatics
#index768499
#% 
#!
  
#*Discovering semantic features in the literature: a foundation for building functional associations.
#@Monica Chagoyen,Pedro Carmona-Saez,Hagit Shatkay,José María Carazo,Alberto D. Pascual-Montano
#t2006
#cBMC Bioinformatics
#index768500
#% 
#!
  
#*htSNPer1.0: software for haplotype block partition and htSNPs selection.
#@Keyue Ding,Jing Zhang,Kaixin Zhou,Yan Shen,Xuegong Zhang
#t2005
#cBMC Bioinformatics
#index768501
#% 
#!
  
#*Improvement of alignment accuracy utilizing sequentially conserved motifs.
#@Saikat Chakrabarti,Nitin Bhardwaj,Prem A. Anand,Ramanathan Sowdhamini
#t2004
#cBMC Bioinformatics
#index768502
#% 
#!
  
#*What can we learn from noncoding regions of similarity between genomes?
#@Thomas A. Down,Tim J. P. Hubbard
#t2004
#cBMC Bioinformatics
#index768503
#% 
#!
  
#*Using hexamers to predict cis-regulatory motifs in Drosophila.
#@Bob Y. Chan,Dennis F. Kibler
#t2005
#cBMC Bioinformatics
#index768504
#% 
#!
  
#*EpiJen: a server for multistep T cell epitope prediction.
#@Irini A. Doytchinova,Pingping Guan,Darren R. Flower
#t2006
#cBMC Bioinformatics
#index768505
#% 
#!
  
#*Quantitative inference of dynamic regulatory pathways via microarray data.
#@Wen-Chieh Chang,Chang-Wei Li,Bor-Sen Chen
#t2005
#cBMC Bioinformatics
#index768506
#% 
#!
  
#*Statistical monitoring of weak spots for improvement of normalization and ratio estimates in microarrays.
#@Igor Dozmorov,Nicholas Knowlton,Yuhong Tang,Michael Centola
#t2004
#cBMC Bioinformatics
#index768507
#% 
#!
  
#*INTEGRATOR: interactive graphical search of large protein interactomes over the Web.
#@Aaron N. Chang,Jason McDermott,Zachary Frazier,Michal Guerquin,Ram Samudrala
#t2006
#cBMC Bioinformatics
#index768508
#% 
#!
  
#*Aggregation of topological motifs in the transcriptional regulatory network.
#@Radu Dobrin,Qasim K. Beg,Albert-László Barabási,Zoltán N. Oltvai
#t2004
#cBMC Bioinformatics
#index768509
#% 
#!
  
#*A reinforced merging methodology for mapping unique peptide motifs in members of protein families.
#@Hao-Teng Chang,Tun-Wen Pai,Tan-Chi Fan,Bo-Han Su,Pei-Chih Wu,Chuan Yi Tang,Chun-Tien Chang,Shi-Hwei Liu,Margaret Dah-Tsyr Chang
#t2006
#cBMC Bioinformatics
#index768510
#% 
#!
  
#*Ontological visualization of protein-protein interactions.
#@Harold J. Drabkin,Christopher Hollenbeck,David P. Hill,Judith A. Blake
#t2005
#cBMC Bioinformatics
#index768511
#% 
#!
  
#*SCOPmap: Automated assignment of protein structures to evolutionary superfamilies.
#@Sara Cheek,Yuan Qi,S. Sri Krishna,Lisa N. Kinch,Nick V. Grishin
#t2004
#cBMC Bioinformatics
#index768512
#% 
#!
  
#*NBLAST: a cluster variant of BLAST for NxN comparisons.
#@Michel Dumontier,Christopher W. V. Hogue
#t2002
#cBMC Bioinformatics
#index768513
#% 
#!
  
#*Identification of significant periodic genes in microarray gene expression data.
#@Jie Chen
#t2005
#cBMC Bioinformatics
#index768514
#% 
#!
  
#*Species-specific protein sequence and fold optimizations.
#@Michel Dumontier,Katerina Michalickova,Christopher W. V. Hogue
#t2002
#cBMC Bioinformatics
#index768515
#% 
#!
  
#*Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat.
#@Feng-Chi Chen,Chuang-Jong Chen,Jar-Yi Ho,Trees-Juen Chuang
#t2006
#cBMC Bioinformatics
#index768516
#% 
#!
  
#*The Use of Edge-Betweenness Clustering to Investigate Biological Function in Protein Interaction Networks.
#@Ruth Dunn,Frank Dudbridge,Christopher M. Sanderson
#t2005
#cBMC Bioinformatics
#index768517
#% 
#!
  
#*A multivariate prediction model for microarray cross-hybridization.
#@Yian A. Chen,Cheng-Chung Chou,Xinghua Lu,Elizabeth H. Slate,Konan Peck,Wenying Xu,Eberhard O. Voit,Jonas S. Almeida
#t2006
#cBMC Bioinformatics
#index768518
#% 
#!
  
#*GenoLink: a graph-based querying and browsing system for investigating the function of genes and proteins.
#@Patrick Durand,Laurent Labarre,Alain Meil,Jean-Louis Divol,Yves Vandenbrouck,Alain Viari,Jérôme Wojcik
#t2006
#cBMC Bioinformatics
#index768519
#% 
#!
  
#*CGHPRO - A comprehensive data analysis tool for array CGH.
#@Wei Chen,Fikret Erdogan,H.-Hilger Ropers,Steffen Lenzner,Reinhard Ullmann
#t2005
#cBMC Bioinformatics
#index768520
#% 
#!
  
#*Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics.
#@Julien Dutheil,Sylvain Gaillard,Eric Bazin,Sylvain Glemin,Vincent Ranwez,Nicolas Galtier,Khalid Belkhir
#t2006
#cBMC Bioinformatics
#index768521
#% 
#!
  
#*A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images.
#@Shann-Ching Chen,Robert F. Murphy
#t2006
#cBMC Bioinformatics
#index768522
#% 
#!
  
#*: automated analysis and storage of small RNA cloning data using a dynamic web server.
#@H. Alexander Ebhardt,Kay C. Wiese,Peter J. Unrau
#t2006
#cBMC Bioinformatics
#index768523
#% 
#!
  
#*Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information.
#@Yian A. Chen,David J. Mckillen,Shuyuan Wu,Matthew J. Jenny,Robert Chapman,Paul S. Gross,Gregory W. Warr,Jonas S. Almeida
#t2004
#cBMC Bioinformatics
#index768524
#% 
#!
  
#*A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure.
#@Sean R. Eddy
#t2002
#cBMC Bioinformatics
#index768525
#% 
#!
  
#*Oliz, a suite of Perl scripts that assist in the design of microarrays using 50mer oligonucleotides from the 3' untranslated region.
#@Hao Chen,Burt M. Sharp
#t2002
#cBMC Bioinformatics
#index768526
#% 
#!
  
#*MUSCLE: a multiple sequence alignment method with reduced time and space complexity.
#@Robert C. Edgar
#t2004
#cBMC Bioinformatics
#index768527
#% 
#!
  
#*Content-rich biological network constructed by mining PubMed abstracts.
#@Hao Chen,Burt M. Sharp
#t2004
#cBMC Bioinformatics
#index768528
#% 
#!
  
#*Metabolic flux balance analysis and the analysis of K-12 gene deletions.
#@Jeremy S. Edwards,Bernhard O. Palsson
#t2000
#cBMC Bioinformatics
#index768529
#% 
#!
  
#*On the attenuation and amplification of molecular noise in genetic regulatory networks.
#@Bor-Sen Chen,Yu-Chao Wang
#t2006
#cBMC Bioinformatics
#index768530
#% 
#!
  
#*GASP: Gapped Ancestral Sequence Prediction for proteins.
#@Richard J. Edwards,Denis C. Shields
#t2004
#cBMC Bioinformatics
#index768531
#% 
#!
  
#*GO-Diff: Mining functional differentiation between EST-based transcriptomes.
#@Zuozhou Chen,Weilin Wang,Xuefeng Bruce Ling,Jane Jijun Liu,Liangbiao Chen
#t2006
#cBMC Bioinformatics
#index768532
#% 
#!
  
#*A database for G proteins and their interaction with GPCRs.
#@Antigoni L. Elefsinioti,Pantelis G. Bagos,Ioannis C. Spyropoulos,Stavros J. Hamodrakas
#t2004
#cBMC Bioinformatics
#index768533
#% 
#!
  
#*Structural characterization of genomes by large scale sequence-structure threading.
#@Artem Cherkasov,Steven J. M. Jones
#t2004
#cBMC Bioinformatics
#index768534
#% 
#!
  
#*Conservation of regulatory elements between two species of Drosophila.
#@Eldon Emberly,Nikolaus Rajewsky,Eric D. Siggia
#t2003
#cBMC Bioinformatics
#index768535
#% 
#!
  
#*An approach to large scale identification of non-obvious structural similarities between proteins.
#@Artem Cherkasov,Steven J. M. Jones
#t2004
#cBMC Bioinformatics
#index768536
#% 
#!
  
#*Predicting deleterious nsSNPs: an analysis of sequence and structural attributes.
#@Richard J. B. Dobson,Patricia B. Munroe,Mark J. Caulfield,Mansoor A. S. Saqi
#t2006
#cBMC Bioinformatics
#index768537
#% 
#!
  
#*Structural characterization of genomes by large scale sequence-structure threading: application of reliability analysis in structural genomics.
#@Artem Cherkasov,Shannan J. Ho Sui,Robert C. Brunham,Steven J. M. Jones
#t2004
#cBMC Bioinformatics
#index768538
#% 
#!
  
#*Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis.
#@François Enault,Karsten Suhre,Jean-Michel Claverie
#t2005
#cBMC Bioinformatics
#index768539
#% 
#!
  
#*Implications for domain fusion protein-protein interactions based on structural information.
#@Jer-Ming Chia,Prasanna R. Kolatkar
#t2004
#cBMC Bioinformatics
#index768540
#% 
#!
  
#*GOurmet: A tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributions.
#@Jason M. Doherty,Lynn K. Carmichael,Jason C. Mills
#t2006
#cBMC Bioinformatics
#index768541
#% 
#!
  
#*Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops.
#@Hélène Chiapello,I. Bourgait,F. Sourivong,G. Heuclin,Annie Gendrault-Jacquemard,Marie-Agnès Petit,Meriem El Karoui
#t2005
#cBMC Bioinformatics
#index768542
#% 
#!
  
#*STEM: a tool for the analysis of short time series gene expression data.
#@Jason Ernst,Ziv Bar-Joseph
#t2006
#cBMC Bioinformatics
#index768543
#% 
#!
  
#*SeeGH - A software tool for visualization of whole genome array comparative genomic hybridization data.
#@Bryan Chi,Ronald J. deLeeuw,Bradley P. Coe,Calum MacAulay,Wan L. Lam
#t2004
#cBMC Bioinformatics
#index768544
#% 
#!
  
#*Gene finding in the chicken genome.
#@Eduardo Eyras,Alexandre Reymond,Robert Castelo,Jacqueline M. Bye,Francisco Camara,Paul Flicek,Elizabeth J. Huckle,Genis Parra,David D. Shteynberg,Carine Wyss,Jane Rogers,Stylianos E. Antonarakis,Ewan Birney,Roderic Guigó,Michael R. Brent
#t2005
#cBMC Bioinformatics
#index768545
#% 
#!
  
#*SPdb - a signal peptide database.
#@Khar Heng Choo,Tin Wee Tan,Shoba Ranganathan
#t2005
#cBMC Bioinformatics
#index768546
#% 
#!
  
#*Discover protein sequence signatures from protein-protein interaction data.
#@Jianwen Fang,Ryan J. Haasl,Yinghua Dong,Gerald H. Lushington
#t2005
#cBMC Bioinformatics
#index768547
#% 
#!
  
#*Design of microarray probes for virus identification and detection of emerging viruses at the genus level.
#@Cheng-Chung Chou,Te-Tsui Lee,Chun-Houh Chen,Hsiang-Yun Hsiao,Yi-Ling Lin,Mei-Shang Ho,Pan-Chyr Yang,Konan Peck
#t2006
#cBMC Bioinformatics
#index768548
#% 
#!
  
#*JAtlasView: a Java atlas-viewer for browsing biomedical 3D images and atlases.
#@Guangjie Feng,Nick Burton,Bill Hill,Duncan Davidson,Janet Kerwin,Mark Scott,Susan Lindsay,Richard A. Baldock
#t2005
#cBMC Bioinformatics
#index768549
#% 
#!
  
#*Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network.
#@Wen-Yu Chung,Réka Albert,István Albert,Anton Nekrutenko,Kateryna D. Makova
#t2006
#cBMC Bioinformatics
#index768550
#% 
#!
  
#*An imaging system for standardized quantitative analysis of behavior.
#@Zhaoyang Feng,Christopher J. Cronin,John H. Wittig Jr.,Paul W. Sternberg,William R. Schafer
#t2004
#cBMC Bioinformatics
#index768551
#% 
#!
  
#*Protein family comparison using statistical models and predicted structural information.
#@Richard Chung,Golan Yona
#t2004
#cBMC Bioinformatics
#index768552
#% 
#!
  
#*Applying dynamic Bayesian networks to perturbed gene expression data.
#@Norbert Dojer,Anna Gambin,Andrzej Mizera,Bartek Wilczynski,Jerzy Tiuryn
#t2006
#cBMC Bioinformatics
#index768553
#% 
#!
  
#*A method of precise mRNA/DNA homology-based gene structure prediction.
#@Alexander G. Churbanov,Mark Pauley,Daniel Quest,Hesham H. Ali
#t2005
#cBMC Bioinformatics
#index768554
#% 
#!
  
#*RAG: RNA-As-Graphs web resource.
#@Daniela Fera,Namhee Kim,Nahum Shiffeldrim,Julie Zorn,Uri Laserson,Hin Hark Gan,Tamar Schlick
#t2004
#cBMC Bioinformatics
#index768555
#% 
#!
  
#*RNAmute: RNA secondary structure mutation analysis tool.
#@Alexander Churkin,Danny Barash
#t2006
#cBMC Bioinformatics
#index768556
#% 
#!
  
#*PreBIND and Textomy - mining the biomedical literature for protein-protein interactions using a support vector machine.
#@Ian Donaldson,Joel D. Martin,Berry de Bruijn,Cheryl Wolting,Vicki Lay,Brigitte Tuekam,Shudong Zhang,Berivan Baskin,Gary D. Bader,Katerina Michalickova,Tony Pawson,Christopher W. V. Hogue
#t2003
#cBMC Bioinformatics
#index768557
#% 
#!
  
#*The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold.
#@Francesca Ciccarelli,Elisa Izaurralde,Peer Bork
#t2003
#cBMC Bioinformatics
#index768558
#% 
#!
  
#*Functional annotation by identification of local surface similarities: a novel tool for structural genomics.
#@Fabrizio Ferrè,Gabriele Ausiello,Andreas Zanzoni,Manuela Helmer-Citterich
#t2005
#cBMC Bioinformatics
#index768559
#% 
#!
  
#*Delayed impact: ISI's citation tracking choices are keeping scientists in the dark.
#@Matthew J. Cockerill
#t2004
#cBMC Bioinformatics
#index768560
#% 
#!
  
#*The modeled structure of the RNA dependent RNA polymerase of GBV-C Virus suggests a role for motif E in RNA polymerases.
#@François Ferron,Cécile Bussetta,Hélène Dutartre,Bruno Canard
#t2005
#cBMC Bioinformatics
#index768561
#% 
#!
  
#*BMC Bioinformatics comes of age.
#@Matthew J. Cockerill
#t2005
#cBMC Bioinformatics
#index768562
#% 
#!
  
#*Prediction of MHC class I binding peptides, using SVMHC.
#@Pierre Dönnes,Arne Elofsson
#t2002
#cBMC Bioinformatics
#index768563
#% 
#!
  
#*An application of conditional logistic regression and multifactor dimensionality reduction for detecting gene-gene Interactions on risk of myocardial infarction: The importance of model validation.
#@Christopher S. Coffey,Patricia R. Hebert,Marylyn D. Ritchie,Harlan M. Krumholz,J. Michael Gaziano,Paul M. Ridker,Nancy J. Brown,Douglas E. Vaughan,Jason H. Moore
#t2004
#cBMC Bioinformatics
#index768564
#% 
#!
  
#*An integrated system for genetic analysis.
#@Simon Fiddy,David Cattermole,Dong Xie,Xiao Yuan Duan,Richard Mott
#t2006
#cBMC Bioinformatics
#index768565
#% 
#!
  
#*Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts.
#@Aaron M. Cohen,William R. Hersh,Christopher Dubay,Kent A. Spackman
#t2005
#cBMC Bioinformatics
#index768566
#% 
#!
  
#*Allermatch(tm), a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines.
#@Mark W. E. J. Fiers,Gijs A. Kleter,Herman Nijland,Jan Peter Nap,Roeland C. H. J. van Ham
#t2004
#cBMC Bioinformatics
#index768567
#% 
#!
  
#*Enhanced protein domain discovery using taxonomy.
#@Lachlan James M. Coin,Alex Bateman,Richard Durbin
#t2004
#cBMC Bioinformatics
#index768568
#% 
#!
  
#*Detecting overlapping coding sequences in virus genomes.
#@Andrew E. Firth,Chris M. Brown
#t2006
#cBMC Bioinformatics
#index768569
#% 
#!
  
#*wFleaBase: the genome database.
#@John Colbourne,Vasanth R. Singan,Don G. Gilbert
#t2005
#cBMC Bioinformatics
#index768570
#% 
#!
  
#*XHM: A system for detection of potential cross hybridizations in DNA microarrays.
#@Kristian Flikka,Fekadu Yadetie,Astrid Lægreid,Inge Jonassen
#t2004
#cBMC Bioinformatics
#index768571
#% 
#!
  
#*A fast algorithm for determining the best combination of local alignments to a query sequence.
#@Gavin C. Conant,Andreas Wagner
#t2004
#cBMC Bioinformatics
#index768572
#% 
#!
  
#*A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators.
#@Federico Fogolari,Silvio C. E. Tosatto,Giorgio Colombo
#t2005
#cBMC Bioinformatics
#index768573
#% 
#!
  
#*Bayesian models for pooling microarray studies with multiple sources of replications.
#@Erin M. Conlon,Joon J. Song,Jun S. Liu
#t2006
#cBMC Bioinformatics
#index768574
#% 
#!
  
#*'PACLIMS': A component LIM system for high-throughput functional genomic analysis.
#@Nicole Donofrio,Ravi Rajagopalon,Douglas E. Brown,Stephen E. Diener,Donald Windham,Shelly Nolin,Anna Floyd,Thomas K. Mitchell,Natalia Galadima,Sara Tucker,Marc J. Orbach,Gayatri Patel,Mark L. Farman,Vishal Pampanwar,Cari Soderlund,Yong-Hwan Lee,Ralph A. Dean
#t2005
#cBMC Bioinformatics
#index768575
#% 
#!
  
#*A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks.
#@Holger Conzelmann,Julio Saez-Rodriguez,Thomas Sauter,Boris N. Kholodenko,Ernst Dieter Gilles
#t2006
#cBMC Bioinformatics
#index768576
#% 
#!
  
#*Integrating alternative splicing detection into gene prediction.
#@Sylvain Foissac,Thomas Schiex
#t2005
#cBMC Bioinformatics
#index768577
#% 
#!
  
#*Discovery of protein-protein interactions using a combination of linguistic, statistical and graphical information.
#@James W. Cooper,Aaron Kershenbaum
#t2005
#cBMC Bioinformatics
#index768578
#% 
#!
  
#*SpectralNET - an application for spectral graph analysis and visualization.
#@Joshua J. Forman,Paul A. Clemons,Stuart L. Schreiber,Stephen J. Haggarty
#t2005
#cBMC Bioinformatics
#index768579
#% 
#!
  
#*ABC: software for interactive browsing of genomic multiple sequence alignment data.
#@Gregory M. Cooper,Senthil A. G. Singaravelu,Arend Sidow
#t2004
#cBMC Bioinformatics
#index768580
#% 
#!
  
#*PhosphoregDB: The tissue and sub-cellular distribution of mammalian protein kinases and phosphatases.
#@Alistair R. R. Forrest,Darrin F. Taylor,J. Lynn Fink,M. Milena Gongora,Cameron Flegg,Rohan D. Teasdale,Harukazu Suzuki,Mutsumi Kanamori,Chikatoshi Kai,Yoshihide Hayashizaki,Sean M. Grimmond
#t2006
#cBMC Bioinformatics
#index768581
#% 
#!
  
#*Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrep-resented upstream motifs.
#@Davide Corà,Ferdinando Di Cunto,Paolo Provero,Lorenzo Silengo,Michele Caselle
#t2004
#cBMC Bioinformatics
#index768582
#% 
#!
  
#*Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation.
#@Christian V. Forst,Christoph Flamm,Ivo L. Hofacker,Peter F. Stadler
#t2006
#cBMC Bioinformatics
#index768583
#% 
#!
  
#*Ab initio identification of putative human transcription factor binding sites by comparative genomics.
#@Davide Corà,Carl Herrmann,Christoph Dieterich,Ferdinando Di Cunto,Paolo Provero,Michele Caselle
#t2005
#cBMC Bioinformatics
#index768584
#% 
#!
  
#*Use of a structural alphabet for analysis of short loops connecting repetitive structures.
#@Laurent Fourrier,Cristina Benros,Alexandre G. de Brevern
#t2004
#cBMC Bioinformatics
#index768585
#% 
#!
  
#*The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries.
#@Richard G. Côté,Philip Jones,Rolf Apweiler,Henning Hermjakob
#t2006
#cBMC Bioinformatics
#index768586
#% 
#!
  
#*Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction.
#@Kishore J. Doshi,Jamie J. Cannone,Christian W. Cobaugh,Robin Ray Gutell
#t2004
#cBMC Bioinformatics
#index768587
#% 
#!
  
#*A study of quality measures for protein threading models.
#@Susana Cristobal,Adam Zemla,Daniel Fischer,Leszek Rychlewski,Arne Elofsson
#t2001
#cBMC Bioinformatics
#index768588
#% 
#!
  
#*A two-sample Bayesian -test for microarray data.
#@Richard J. Fox,Matthew W. Dimmic
#t2006
#cBMC Bioinformatics
#index768589
#% 
#!
  
#*Querying the public databases for sequences using complex keywords contained in the feature lines.
#@Olivier Croce,Michaël Lamarre,Richard Christen
#t2006
#cBMC Bioinformatics
#index768590
#% 
#!
  
#*A comparison of RNA folding measures.
#@Eva Freyhult,Paul P. Gardner,Vincent Moulton
#t2005
#cBMC Bioinformatics
#index768591
#% 
#!
  
#*SeqDoC: rapid SNP and mutation detection by direct comparison of DNA sequence chromatograms.
#@Mark L. Crowe
#t2005
#cBMC Bioinformatics
#index768592
#% 
#!
  
#*Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling.
#@Eva Freyhult,Peteris Prusis,Maris Lapinsh,Jarl E. S. Wikberg,Vincent Moulton,Mats G. Gustafsson
#t2005
#cBMC Bioinformatics
#index768593
#% 
#!
  
#*Esub8: A novel tool to predict protein subcellular localizations in eukaryotic organisms.
#@Qinghua Cui,Tianzi Jiang,Bing Liu,Songde Ma
#t2004
#cBMC Bioinformatics
#index768594
#% 
#!
  
#*Scoring functions for transcription factor binding site prediction.
#@Markus T. Friberg,Peter von Rohr,Gaston H. Gonnet
#t2005
#cBMC Bioinformatics
#index768595
#% 
#!
  
#*Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.
#@Aedín C. Culhane,Guy Perrière,Desmond G. Higgins
#t2003
#cBMC Bioinformatics
#index768596
#% 
#!
  
#*Entropy-based gene ranking without selection bias for the predictive classification of microarray data.
#@Cesare Furlanello,Maria Serafini,Stefano Merler,Giuseppe Jurman
#t2003
#cBMC Bioinformatics
#index768597
#% 
#!
  
#*Simple statistical models predict C-to-U edited sites in plant mitochondrial RNA.
#@Michael P. Cummings,Daniel S. Myers
#t2004
#cBMC Bioinformatics
#index768598
#% 
#!
  
#*Genome-wide prediction, display and refinement of binding sites with information theory-based models.
#@Sashidhar Gadiraju,Carrie A. Vyhlidal,J. Steven Leeder,Peter K. Rogan
#t2003
#cBMC Bioinformatics
#index768599
#% 
#!
  
#*Few amino acid positions in are associated with most of the rifampin resistance in .
#@Michael P. Cummings,Mark R. Segal
#t2004
#cBMC Bioinformatics
#index768600
#% 
#!
  
#*Iterative approach to model identification of biological networks.
#@Kapil G. Gadkar,Rudiyanto Gunawan,Francis J. Doyle III
#t2005
#cBMC Bioinformatics
#index768601
#% 
#!
  
#*Providing visualisation support for the analysis of anatomy ontology data.
#@Aba-Sah Dadzie,Albert Burger
#t2005
#cBMC Bioinformatics
#index768602
#% 
#!
  
#*Computation of elementary modes: a unifying framework and the new binary approach.
#@Julien Gagneur,Steffen Klamt
#t2004
#cBMC Bioinformatics
#index768603
#% 
#!
  
#*Evaluating concentration estimation errors in ELISA microarray experiments.
#@Don Simone Daly,Amanda M. White,Susan M. Varnum,Kevin K. Anderson,Richard C. Zangar
#t2005
#cBMC Bioinformatics
#index768604
#% 
#!
  
#*Sex genes for genomic analysis in human brain: internal controls for comparison of probe level data extraction.
#@Hanga C. Galfalvy,Loubna Erraji-Benchekroun,Peggy Smyrniotopoulos,Paul Pavlidis,Steven P. Ellis,J. John Mann,Etienne Sibille,Victoria Arango
#t2003
#cBMC Bioinformatics
#index768605
#% 
#!
  
#*Estimating mutual information using B-spline functions - an improved similarity measure for analysing gene expression data.
#@Carsten O. Daub,Ralf Steuer,Joachim Selbig,Sebastian Kloska
#t2004
#cBMC Bioinformatics
#index768606
#% 
#!
  
#*Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).
#@Scot E. Dowd,Joaquin Zaragoza,Javier R. Rodriguez,Melvin J. Oliver,Paxton R. Payton
#t2005
#cBMC Bioinformatics
#index768607
#% 
#!
  
#*AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis -regulatory elements and transcription factors.
#@Ramana V. Davuluri,Hao Sun,Saranyan K. Palaniswamy,Nicole Matthews,Carlos Molina,Mike Kurtz,Erich Grotewold
#t2003
#cBMC Bioinformatics
#index768608
#% 
#!
  
#*Finding biological process modifications in cancer tissues by mining gene expression correlations.
#@Giacomo Gamberoni,Sergio Storari,Stefano Volinia
#t2006
#cBMC Bioinformatics
#index768609
#% 
#!
  
#*Sample phenotype clusters in high-density oligonucleotide microarray data sets are revealed using Isomap, a nonlinear algorithm.
#@Kevin Dawson,Raymond L. Rodriguez,Wasyl Malyj
#t2005
#cBMC Bioinformatics
#index768610
#% 
#!
  
#*Comparative analysis of chromatin landscape in regulatory regions of human housekeeping and tissue specific genes.
#@Mythily Ganapathi,Pragya Srivastava,Sushanta Kumar Das Sutar,Kaushal Kumar,Dipayan Dasgupta,Gajinder Pal Singh,Vani Brahmachari,Samir K. Brahmachari
#t2005
#cBMC Bioinformatics
#index768611
#% 
#!
  
#*Normal uniform mixture differential gene expression detection for cDNA microarrays.
#@Nema Dean,Adrian E. Raftery
#t2005
#cBMC Bioinformatics
#index768612
#% 
#!
  
#*Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.
#@Feng Gao,Barrett C. Foat,Harmen J. Bussemaker
#t2004
#cBMC Bioinformatics
#index768613
#% 
#!
  
#*A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database.
#@Paramvir S. Dehal,Jeffrey L. Boore
#t2006
#cBMC Bioinformatics
#index768614
#% 
#!
  
#*Nonparametric tests for differential gene expression and interaction effects in multi-factorial microarray experiments.
#@Xin Gao,Peter X. K. Song
#t2005
#cBMC Bioinformatics
#index768615
#% 
#!
  
#*Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains : a web-based resource.
#@France Denoeud,Gilles Vergnaud
#t2004
#cBMC Bioinformatics
#index768616
#% 
#!
  
#*: software to identify domains responsible for functional divergence in protein family.
#@Xiang Gao,Kent Vander Velden,Daniel F. Voytas,Xun Gu
#t2005
#cBMC Bioinformatics
#index768617
#% 
#!
  
#*COPASAAR - A database for proteomic analysis of single amino acid repeats.
#@Daniel P. Depledge,Andrew R. Dalby
#t2005
#cBMC Bioinformatics
#index768618
#% 
#!
  
#*A comprehensive comparison of comparative RNA structure prediction approaches.
#@Paul P. Gardner,Robert Giegerich
#t2004
#cBMC Bioinformatics
#index768619
#% 
#!
  
#*A new mixture model approach to analyzing allelic-loss data using Bayes factors.
#@Manisha Desai,Mary J. Emond
#t2004
#cBMC Bioinformatics
#index768620
#% 
#!
  
#*TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins.
#@Andrew G. Garrow,Alison Agnew,David R. Westhead
#t2005
#cBMC Bioinformatics
#index768621
#% 
#!
  
#*Differences in codon bias cannot explain differences in translational power among microbes.
#@Les Dethlefsen,Thomas M. Schmidt
#t2005
#cBMC Bioinformatics
#index768622
#% 
#!
  
#*Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction.
#@Robin D. Dowell,Sean R. Eddy
#t2004
#cBMC Bioinformatics
#index768623
#% 
#!
  
#*Gene selection and classification of microarray data using random forest.
#@Ramón Díaz-Uriarte,Sara Alvarez de Andrés
#t2006
#cBMC Bioinformatics
#index768624
#% 
#!
  
#*The Distributed Annotation System.
#@Robin D. Dowell,Rodney M. Jokerst,Allen Day,Sean R. Eddy,Lincoln Stein
#t2001
#cBMC Bioinformatics
#index768625
#% 
#!
  
#*Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins.
#@Francesca Diella,Scott Cameron,Christine Gemünd,Rune Linding,Allegra Via,Bernhard Küster,Thomas Sicheritz-Pontén,Nikolaj Blom,Toby J. Gibson
#t2004
#cBMC Bioinformatics
#index768626
#% 
#!
  
#*MIDAS: software for analysis and visualisation of interallelic disequilibrium between multiallelic markers.
#@Tom R. Gaunt,Santiago Rodríguez,Carlos Zapata,Ian N. M. Day
#t2006
#cBMC Bioinformatics
#index768627
#% 
#!
  
#*MolTalk - a programming library for protein structures and structure analysis.
#@Alexander V. Diemand,Holger Scheib
#t2004
#cBMC Bioinformatics
#index768628
#% 
#!
  
#*Alkahest NuclearBLAST: a user-friendly BLAST management and analysis system.
#@Stephen E. Diener,Thomas D. Houfek,Sam E. Kalat,D. E. Windham,Mark Burke,Charles Opperman,Ralph A. Dean
#t2005
#cBMC Bioinformatics
#index768629
#% 
#!
  
#*Alternative mapping of probes to genes for chips.
#@Laurent Gautier,Morten Møller,Lennart Friis-Hansen,Steen Knudsen
#t2004
#cBMC Bioinformatics
#index768630
#% 
#!
  
#*EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments.
#@Jean-Christophe Gelly,Laurent Chiche,Jérôme Gracy
#t2005
#cBMC Bioinformatics
#index768631
#% 
#!
  
#*GenClust: A genetic algorithm for clustering gene expression data.
#@Vito Di Gesù,Raffaele Giancarlo,Giosuè Lo Bosco,Alessandra Raimondi,Davide Scaturro
#t2005
#cBMC Bioinformatics
#index768632
#% 
#!
  
#*GenomeViz: visualizing microbial genomes.
#@Rohit Ghai,Torsten Hain,Trinad Chakraborty
#t2004
#cBMC Bioinformatics
#index768633
#% 
#!
  
#*Individual sequences in large sets of gene sequences may be distinguished efficiently by combinations of shared sub-sequences.
#@Mark J. Gibbs,John S. Armstrong,Adrian J. Gibbs
#t2005
#cBMC Bioinformatics
#index768634
#% 
#!
  
#*Expression profiling of human renal carcinomas with functional taxonomic analysis.
#@Michael A. Gieseg,Theresa Cody,Michael Z. Man,Steven J. Madore,Mark A. Rubin,Eric P. Kaldjian
#t2002
#cBMC Bioinformatics
#index768635
#% 
#!
  
#*HotSwap for bioinformatics: A STRAP tutorial.
#@Christoph Gille,Peter N. Robinson
#t2006
#cBMC Bioinformatics
#index768636
#% 
#!
  
#*Functionally specified protein signatures distinctive for each of the different blue copper proteins.
#@Anuradha Vivekanandan Giri,Sharmila Anishetty,Pennathur Gautam
#t2004
#cBMC Bioinformatics
#index768637
#% 
#!
  
#*SUPERFICIAL - Surface mapping of proteins via structure-based peptide library design.
#@Andrean Goede,Ines S. Jaeger,Robert Preissner
#t2005
#cBMC Bioinformatics
#index768638
#% 
#!
  
#*SuperMimic - Fitting peptide mimetics into protein structures.
#@Andrean Goede,Elke Michalsky,Ulrike Schmidt,Robert Preissner
#t2006
#cBMC Bioinformatics
#index768639
#% 
#!
  
#*Evaluation of absolute quantitation by nonlinear regression in probe-based real-time PCR.
#@Rasmus Goll,Trine Olsen,Guanglin Cui,Jon Florholmen
#t2006
#cBMC Bioinformatics
#index768640
#% 
#!
  
#*A protein domain interaction interface database: InterPare.
#@Sungsam Gong,Changbum Park,Hansol Choi,Junsu Ko,Insoo Jang,Jungsul Lee,Dan M. Bolser,Donghoon Oh,Deok-Soo Kim,Jong Bhak
#t2005
#cBMC Bioinformatics
#index768641
#% 
#!
  
#*FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform.
#@Philippe Gouret,Vérane Vitiello,Nathalie Balandraud,André Gilles,Pierre Pontarotti,Etienne G. J. Danchin
#t2005
#cBMC Bioinformatics
#index768642
#% 
#!
  
#*Multipolar representation of protein structure.
#@Apostol Gramada,Philip E. Bourne
#t2006
#cBMC Bioinformatics
#index768643
#% 
#!
  
#*Many accurate small-discriminatory feature subsets exist in microarray transcript data: biomarker discovery.
#@Leslie Grate
#t2005
#cBMC Bioinformatics
#index768644
#% 
#!
  
#*A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases.
#@Michelle L. Green,Peter D. Karp
#t2004
#cBMC Bioinformatics
#index768645
#% 
#!
  
#*CARMA: A platform for analyzing microarray datasets that incorporate replicate measures.
#@Kevin A. Greer,Matthew R. McReynolds,Heddwen L. Brooks,James B. Hoying
#t2006
#cBMC Bioinformatics
#index768646
#% 
#!
  
#*Efficient analysis and extraction of MS/MS result data from Mascot result files.
#@Florian Grosse-Coosmann,Andreas M. Boehm,Albert Sickmann
#t2005
#cBMC Bioinformatics
#index768647
#% 
#!
  
#*PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics.
#@Marcin von Grotthuss,Dariusz Plewczynski,Krzysztof Ginalski,Leszek Rychlewski,Eugene I. Shakhnovich
#t2006
#cBMC Bioinformatics
#index768648
#% 
#!
  
#*Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization.
#@Marcin Grynberg,Lukasz Jaroszewski,Adam Godzik
#t2003
#cBMC Bioinformatics
#index768649
#% 
#!
  
#*ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes.
#@Feng-Biao Guo,Chun-Ting Zhang
#t2006
#cBMC Bioinformatics
#index768650
#% 
#!
  
#*Towards precise classification of cancers based on robust gene functional expression profiles.
#@Zheng Guo,Tianwen Zhang,Xia Li,Qi Wang,Jianzhen Xu,Hui Yu,Jing Zhu,Haiyun Wang,Chenguang Wang,Eric J. Topol,Qing Wang,Shaoqi Rao
#t2005
#cBMC Bioinformatics
#index768651
#% 
#!
  
#*Detailed protein sequence alignment based on Spectral Similarity Score (SSS).
#@Kshitiz Gupta,Dina Thomas,S. V. Vidya,K. V. Venkatesh,S. Ramakumar
#t2005
#cBMC Bioinformatics
#index768652
#% 
#!
  
#*Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant moment digital representations.
#@Rajalakshmi Gurunathan,Bernard Van Emden,Sethuraman Panchanathan,Sudhir Kumar
#t2004
#cBMC Bioinformatics
#index768653
#% 
#!
  
#*Biologically relevant effects of mRNA amplification on gene expression profiles.
#@Rachel I. M. van Haaften,Blanche Schroen,Ben J. A. Janssen,Arie van Erk,Jacques J. M. Debets,Hubert J. M. Smeets,Jos F. M. Smits,Arthur van den Wijngaard,Yigal M. Pinto,Chris T. A. Evelo
#t2006
#cBMC Bioinformatics
#index768654
#% 
#!
  
#*Confirmation of human protein interaction data by human expression data.
#@Andreas Hahn,Jörg Rahnenführer,Priti Talwar,Thomas Lengauer
#t2005
#cBMC Bioinformatics
#index768655
#% 
#!
  
#*Detection of compound mode of action by computational integration of whole-genome measurements and genetic perturbations.
#@Kristofer Hallén,Johan Björkegren,Jesper Tegnér
#t2006
#cBMC Bioinformatics
#index768656
#% 
#!
  
#*Fast-Find: A novel computational approach to analyzing combinatorial motifs.
#@Micah Hamady,Erin Peden,Rob Knight,Ravinder Singh
#t2006
#cBMC Bioinformatics
#index768657
#% 
#!
  
#*Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking.
#@Shugo Hamahashi,Shuichi Onami,Hiroaki Kitano
#t2005
#cBMC Bioinformatics
#index768658
#% 
#!
  
#*PentaPlot: A software tool for the illustration of genome mosaicism.
#@Lutz Hamel,Olga Zhaxybayeva,J. Peter Gogarten
#t2005
#cBMC Bioinformatics
#index768659
#% 
#!
  
#*Identification of novel prognostic markers in cervical intraepithelial neoplasia using LDMAS (LOH Data Management and Analysis Software).
#@Rifat A. Hamoudi,Amina El-Hamidi,Ming-Qing Du
#t2005
#cBMC Bioinformatics
#index768660
#% 
#!
  
#*AtRTPrimer: database for Arabidopsis genome-wide homogeneous and specific RT-PCR primer-pairs.
#@Sangjo Han,Dongsup Kim
#t2006
#cBMC Bioinformatics
#index768661
#% 
#!
  
#*maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination.
#@David Hancock,Michael Wilson,Giles Velarde,Norman Morrison,Andrew Hayes,Helen Hulme,A. Joseph Wood,Karim Nashar,Douglas B. Kell,Andy Brass
#t2005
#cBMC Bioinformatics
#index768662
#% 
#!
  
#*A hybrid clustering approach to recognition of protein families in 114 microbial genomes.
#@Timothy J. Harlow,J. Peter Gogarten,Mark A. Ragan
#t2004
#cBMC Bioinformatics
#index768663
#% 
#!
  
#*Genome comparison without alignment using shortest unique substrings.
#@Bernhard Haubold,Nora Pierstorff,Friedrich Möller,Thomas Wiehe
#t2005
#cBMC Bioinformatics
#index768664
#% 
#!
  
#*A quantitative analysis of secondary RNA structure using domination based parameters on trees.
#@Teresa W. Haynes,Debra J. Knisley,Edith Seier,Yue Zou
#t2006
#cBMC Bioinformatics
#index768665
#% 
#!
  
#*Comparison of mode estimation methods and application in molecular clock analysis.
#@S. Blair Hedges,Prachi Shah
#t2003
#cBMC Bioinformatics
#index768666
#% 
#!
  
#*AnovArray: a set of SAS macros for the analysis of variance of gene expression data.
#@Christelle Hennequet-Antier,Hélène Chiapello,Karine Piot,Séverine Degrelle,Isabelle Hue,Jean-Paul Renard,François Rodolphe,Stéphane Robin
#t2005
#cBMC Bioinformatics
#index768667
#% 
#!
  
#*MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation.
#@Leandro Hermida,Olivier Schaad,Philippe Demougin,Patrick Descombes,Michael Primig
#t2006
#cBMC Bioinformatics
#index768668
#% 
#!
  
#*Visualization methods for statistical analysis of microarray clusters.
#@Matthew A. Hibbs,Nathaniel C. Dirksen,Kai Li,Olga G. Troyanskaya
#t2005
#cBMC Bioinformatics
#index768669
#% 
#!
  
#*STING Millennium Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes.
#@Roberto H. Higa,Roberto C. Togawa,Arnaldo J. Montagner,Juliana F. Palandrani,Igor K. S. Okimoto,Paula R. Kuser,Michel E. B. Yamagishi,Adauto L. Mancini,Goran Neshich
#t2004
#cBMC Bioinformatics
#index768670
#% 
#!
  
#*Spectral embedding finds meaningful (relevant) structure in image and microarray data.
#@Brandon W. Higgs,Jennifer W. Weller,Jeffrey L. Solka
#t2006
#cBMC Bioinformatics
#index768671
#% 
#!
  
#*SNP haplotype tagging from DNA pools of two individuals.
#@Josephine Hoh,Fumihiko Matsuda,Xu Peng,Daniela Markovic,Mark G. Lathrop,Jürg Ott
#t2003
#cBMC Bioinformatics
#index768672
#% 
#!
  
#*WEBnm@: a web application for normal mode analyses of proteins.
#@Siv Midtun Hollup,Gisle Sælensminde,Nathalie Reuter
#t2005
#cBMC Bioinformatics
#index768673
#% 
#!
  
#*A probabilistic model for the evolution of RNA structure.
#@Ian Holmes
#t2004
#cBMC Bioinformatics
#index768674
#% 
#!
  
#*Accelerated probabilistic inference of RNA structure evolution.
#@Ian Holmes
#t2005
#cBMC Bioinformatics
#index768675
#% 
#!
  
#*The InDeVal insertion/deletion evaluation tool: a program for finding target regions in DNA sequences and for aiding in sequence comparison.
#@Sierra D. Stoneberg Holt,Jason A. Holt
#t2004
#cBMC Bioinformatics
#index768676
#% 
#!
  
#*A format for databasing and comparison of AFLP fingerprint profiles.
#@Yan Hong,Aaron Chuah
#t2003
#cBMC Bioinformatics
#index768677
#% 
#!
  
#*GeneNotes - A novel information management software for biologists.
#@Pengyu Hong,Wing Hung Wong
#t2005
#cBMC Bioinformatics
#index768678
#% 
#!
  
#*TF Target Mapper: A BLAST search tool for the identification of Transcription Factor target genes.
#@Sebastiaan Horsman,Michael J. Moorhouse,Victor C. L. de Jager,Peter van der Spek,Frank Grosveld,John Strouboulis,Eleni Z. Katsantoni
#t2006
#cBMC Bioinformatics
#index768679
#% 
#!
  
#*Modeling of cell signaling pathways in macrophages by semantic networks.
#@Michael Hsing,Joel L. Bellenson,Conor Shankey,Artem Cherkasov
#t2004
#cBMC Bioinformatics
#index768680
#% 
#!
  
#*SeqVISTA: a graphical tool for sequence feature visualization and comparison.
#@Zhenjun Hu,Martin C. Frith,Tianhua Niu,Zhiping Weng
#t2003
#cBMC Bioinformatics
#index768681
#% 
#!
  
#*Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models.
#@Pingzhao Hu,Celia M. T. Greenwood,Joseph Beyene
#t2005
#cBMC Bioinformatics
#index768682
#% 
#!
  
#*VisANT: an online visualization and analysis tool for biological interaction data.
#@Zhenjun Hu,Joseph C. Mellor,Jie Wu,Charles DeLisi
#t2004
#cBMC Bioinformatics
#index768683
#% 
#!
  
#*PATTERNFINDER: combined analysis of DNA regulatory sequences and double-helix stability.
#@Yanlin Huang,David Kowalski
#t2004
#cBMC Bioinformatics
#index768684
#% 
#!
  
#*Boosting accuracy of automated classification of fluorescence microscope images for location proteomics.
#@Kai Huang,Robert F. Murphy
#t2004
#cBMC Bioinformatics
#index768685
#% 
#!
  
#*A comparative study of discriminating human heart failure etiology using gene expression profiles.
#@Xiaohong Huang,Wei Pan,Suzanne Grindle,Xinqiang Han,Yingjie Chen,Soon J. Park,Leslie W. Miller,Jennifer Hall
#t2005
#cBMC Bioinformatics
#index768686
#% 
#!
  
#*Auto-validation of fluorescent primer extension genotyping assay using signal clustering and neural networks.
#@Ching Yu Austin Huang,Joel F. Studebaker,Anton Yuryev,Jianping Huang,Kathryn E. Scott,Jennifer Kuebler,Shobha Varde,Steven Alfisi,Craig A. Gelfand,Mark Pohl,Michael T. Boyce-Jacino
#t2004
#cBMC Bioinformatics
#index768687
#% 
#!
  
#*CARAT: A novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays.
#@Jing Huang,Wen Wei,Joyce Chen,Jane Zhang,Guoying Liu,Xiaojun Di,Rui Mei,Shumpei Ishikawa,Hiroyuki Aburatani,Keith W. Jones,Michael H. Shapero
#t2006
#cBMC Bioinformatics
#index768688
#% 
#!
  
#*Selecting additional tag SNPs for tolerating missing data in genotyping.
#@Yao-Ting Huang,Kui Zhang,Ting Chen,Kun-Mao Chao
#t2005
#cBMC Bioinformatics
#index768689
#% 
#!
  
#*Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data.
#@Bertrand R. Huber,Martha L. Bulyk
#t2006
#cBMC Bioinformatics
#index768690
#% 
#!
  
#*Evolutionary algorithms for the selection of single nucleotide polymorphisms.
#@Robert M. Hubley,Eckart Zitzler,Jared C. Roach
#t2003
#cBMC Bioinformatics
#index768691
#% 
#!
  
#*Ancestral sequence alignment under optimal conditions.
#@Alexander K. Hudek,Daniel G. Brown
#t2005
#cBMC Bioinformatics
#index768692
#% 
#!
  
#*Visualising very large phylogenetic trees in three dimensional hyperbolic space.
#@Timothy Hughes,Young Hyun,David A. Liberles
#t2004
#cBMC Bioinformatics
#index768693
#% 
#!
  
#*Species-specific analysis of protein sequence motifs using mutual information.
#@Jan Hummel,Nima Keshvari,Wolfram Weckwerth,Joachim Selbig
#t2005
#cBMC Bioinformatics
#index768694
#% 
#!
  
#*Combining gene expression data from different generations of oligonucleotide arrays.
#@Kyu Baek Hwang,Sek Won Kong,Steven A. Greenberg,Peter J. Park
#t2004
#cBMC Bioinformatics
#index768695
#% 
#!
  
#*Lower expression of genes near microRNA in germline.
#@Hidenori Inaoka,Yutaka Fukuoka,Isaac S. Kohane
#t2006
#cBMC Bioinformatics
#index768696
#% 
#!
  
#*Analysis of concordance of different haplotype block partitioning algorithms.
#@Amit R. Indap,Gabor T. Marth,Craig A. Struble,Peter J. Tonellato,Michael Olivier
#t2005
#cBMC Bioinformatics
#index768697
#% 
#!
  
#*BAMarray: Java software for Bayesian analysis of variance for microarray data.
#@Hemant Ishwaran,J. Sunil Rao,Udaya B. Kogalur
#t2006
#cBMC Bioinformatics
#index768698
#% 
#!
  
#*Rank-invariant resampling based estimation of false discovery rate for analysis of small sample microarray data.
#@Nitin Jain,HyungJun Cho,Michael O'Connell,Jae K. Lee
#t2005
#cBMC Bioinformatics
#index768699
#% 
#!
  
#*Performance of a genetic algorithm for mass spectrometry proteomics.
#@Neal O. Jeffries
#t2004
#cBMC Bioinformatics
#index768700
#% 
#!
  
#*Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes.
#@Hongying Jiang,Youping Deng,Huann-Sheng Chen,Lin Tao,Qiuying Sha,Jun Chen,Chung-Jui Tsai,Shuanglin Zhang
#t2004
#cBMC Bioinformatics
#index768701
#% 
#!
  
#*AVID: An integrative framework for discovering functional relationships among proteins.
#@Taijiao Jiang,Amy E. Keating
#t2005
#cBMC Bioinformatics
#index768702
#% 
#!
  
#*Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs.
#@Victor X. Jin,Gregory A. Singer,Francisco J. Agosto-Perez,Sandya Liyanarachchi,Ramana V. Davuluri
#t2006
#cBMC Bioinformatics
#index768703
#% 
#!
  
#*Feature selection and classification for microarray data analysis: Evolutionary methods for identifying predictive genes.
#@Thanyaluk Jirapech-Umpai,J. Stuart Aitken
#t2005
#cBMC Bioinformatics
#index768704
#% 
#!
  
#*JColorGrid: software for the visualization of biological measurements.
#@Marcin P. Joachimiak,Jennifer L. Weissman,Barnaby C. H. May
#t2006
#cBMC Bioinformatics
#index768705
#% 
#!
  
#*mlstdbNet - distributed multi-locus sequence typing (MLST) databases.
#@Keith A. Jolley,Man-Suen Chan,Martin C. J. Maiden
#t2004
#cBMC Bioinformatics
#index768706
#% 
#!
  
#*Genome-wide identification of the regulatory targets of a transcription factor using biochemical characterization and computational genomic analysis.
#@Emmitt R. Jolly,Chen-Shan Chin,Ira Herskowitz,Hao Li
#t2005
#cBMC Bioinformatics
#index768707
#% 
#!
  
#*Automated methods of predicting the function of biological sequences using GO and BLAST.
#@Craig E. Jones,Ute Baumann,Alfred L. Brown
#t2005
#cBMC Bioinformatics
#index768708
#% 
#!
  
#*Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data.
#@Lesley Jones,Darlene R. Goldstein,Gareth P. Hughes,Andrew Strand,Francois Collin,Stephen B. Dunnett,Charles L. Kooperberg,Aaron Aragaki,James M. Olson,Sarah J. Augood,Richard L. M. Faull,Ruth Luthi-Carter,Valentina Moskvina,Angela K. Hodges
#t2006
#cBMC Bioinformatics
#index768709
#% 
#!
  
#*An analysis of extensible modelling for functional genomics data.
#@Andrew R. Jones,Norman W. Paton
#t2005
#cBMC Bioinformatics
#index768710
#% 
#!
  
#*Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasis.
#@Pall F. Jonsson,Tamara Cavanna,Daniel Zicha,Paul A. Bates
#t2006
#cBMC Bioinformatics
#index768711
#% 
#!
  
#*Chaos game representation for comparison of whole genomes.
#@Jijoy Joseph,Roschen Sasikumar
#t2006
#cBMC Bioinformatics
#index768712
#% 
#!
  
#*GDR (enome atabase for osaceae): integrated web resources for Rosaceae genomics and genetics research.
#@Sook Jung,Christopher Jesudurai,Margaret Staton,Zhidian Du,Stephen Ficklin,Ilhyung Cho,Albert Abbott,Jeffrey Tomkins,Dorrie Main
#t2004
#cBMC Bioinformatics
#index768713
#% 
#!
  
#*VANTED: A system for advanced data analysis and visualization in the context of biological networks.
#@Björn H. Junker,Christian Klukas,Falk Schreiber
#t2006
#cBMC Bioinformatics
#index768714
#% 
#!
  
#*Exploration of biological network centralities with CentiBiN.
#@Björn H. Junker,Dirk Koschützki,Falk Schreiber
#t2006
#cBMC Bioinformatics
#index768715
#% 
#!
  
#*A normalization strategy applied to HiCEP (an AFLP-based expression profiling) analysis: Toward the strict alignment of valid fragments across electrophoretic patterns.
#@Koji Kadota,Ryutaro Fukumura,Joseph J. Rodrigue,Ryoko Araki,Masumi Abe
#t2005
#cBMC Bioinformatics
#index768716
#% 
#!
  
#*A novel method for prokaryotic promoter prediction based on DNA stability.
#@Aditi Kanhere,Manju Bansal
#t2005
#cBMC Bioinformatics
#index768717
#% 
#!
  
#*A functional hierarchical organization of the protein sequence space.
#@Noam Kaplan,Moriah Friedlich,Menachem Fromer,Michal Linial
#t2004
#cBMC Bioinformatics
#index768718
#% 
#!
  
#*Automatic detection of false annotations via binary property clustering.
#@Noam Kaplan,Michal Linial
#t2005
#cBMC Bioinformatics
#index768719
#% 
#!
  
#*mGrid: A load-balanced distributed computing environment for the remote execution of the user-defined Matlab code.
#@Yuliya V. Karpievitch,Jonas S. Almeida
#t2006
#cBMC Bioinformatics
#index768720
#% 
#!
  
#*Homology Induction: the use of machine learning to improve sequence similarity searches.
#@Andreas Karwath,Ross D. King
#t2002
#cBMC Bioinformatics
#index768721
#% 
#!
  
#*Trustworthiness and metrics in visualizing similarity of gene expression.
#@Samuel Kaski,Janne Nikkilä,Merja Oja,Jarkko Venna,Petri Törönen,Eero Castrén
#t2003
#cBMC Bioinformatics
#index768722
#% 
#!
  
#*Processing methods for differential analysis of LC/MS profile data.
#@Mikko Katajamaa,Matej Oresic
#t2005
#cBMC Bioinformatics
#index768723
#% 
#!
  
#*Eval: A software package for analysis of genome annotations.
#@Evan Keibler,Michael R. Brent
#t2003
#cBMC Bioinformatics
#index768724
#% 
#!
  
#*Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.
#@Céline Keime,Francesca Damiola,Dominique Mouchiroud,Laurent Duret,Olivier Gandrillon
#t2004
#cBMC Bioinformatics
#index768725
#% 
#!
  
#*Haplotype frequency estimation error analysis in the presence of missing genotype data.
#@Enda D. Kelly,Fabian Sievers,Ross McManus
#t2004
#cBMC Bioinformatics
#index768726
#% 
#!
  
#*Empirical validation of the S-Score algorithm in the analysis of gene expression data.
#@Richard E. Kennedy,Kellie J. Archer,Michael F. Miles
#t2006
#cBMC Bioinformatics
#index768727
#% 
#!
  
#*Identifying metabolic enzymes with multiple types of association evidence.
#@Peter Kharchenko,Lifeng Chen,Yoav Freund,Dennis Vitkup,George M. Church
#t2006
#cBMC Bioinformatics
#index768728
#% 
#!
  
#*A stepwise framework for the normalization of array CGH data.
#@Mehrnoush Khojasteh,Wan L. Lam,Rabab Kreidieh Ward,Calum MacAulay
#t2005
#cBMC Bioinformatics
#index768729
#% 
#!
  
#*Measuring similarities between transcription factor binding sites.
#@Szymon M. Kielbasa,Didier Gonze,Hanspeter Herzel
#t2005
#cBMC Bioinformatics
#index768730
#% 
#!
  
#*Coronavirus 3CLproteinase cleavage sites: Possible relevance to SARS virus pathology.
#@Lars Kiemer,Ole Lund,Søren Brunak,Nikolaj Blom
#t2004
#cBMC Bioinformatics
#index768731
#% 
#!
  
#*The Longhorn Array Database (LAD): An Open-Source, MIAME compliant implementation of the Stanford Microarray Database (SMD).
#@Patrick J. Killion,Gavin Sherlock,Vishwanath R. Iyer
#t2003
#cBMC Bioinformatics
#index768732
#% 
#!
  
#*Internet-based profiler system as integrative framework to support translational research.
#@Robert Kim,Francesca Demichelis,Jeffery Tang,Alberto Riva,Ronglai Shen,Doug F. Gibbs,Vasudeva Mahavishno,Arul M. Chinnaiyan,Mark A. Rubin
#t2005
#cBMC Bioinformatics
#index768733
#% 
#!
  
#*Significance analysis of lexical bias in microarray data.
#@Charles C. Kim,Stanley Falkow
#t2003
#cBMC Bioinformatics
#index768734
#% 
#!
  
#*Unraveling condition specific gene transcriptional regulatory networks in Saccharomyces cerevisiae.
#@Hyunsoo Kim,William Hu,Yuval Kluger
#t2006
#cBMC Bioinformatics
#index768735
#% 
#!
  
#*An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse.
#@Ryung S. Kim,Hongkai Ji,Wing Hung Wong
#t2006
#cBMC Bioinformatics
#index768736
#% 
#!
  
#*Reuse of imputed data in microarray analysis increases imputation efficiency.
#@Ki-Yeol Kim,Byoung-Jin Kim,Gwan-Su Yi
#t2004
#cBMC Bioinformatics
#index768737
#% 
#!
  
#*Effect of data normalization on fuzzy clustering of DNA microarray data.
#@Seo Young Kim,Jae Won Lee,Jong Sung Bae
#t2006
#cBMC Bioinformatics
#index768738
#% 
#!
  
#*A proposed metric for assessing the measurement quality of individual microarrays.
#@Kyoungmi Kim,Grier P. Page,T. Mark Beasley,Stephen Barnes,Katherine E. Scheirer,David B. Allison
#t2006
#cBMC Bioinformatics
#index768739
#% 
#!
  
#*PAGE: Parametric Analysis of Gene Set Enrichment.
#@Seon-Young Kim,David J. Volsky
#t2005
#cBMC Bioinformatics
#index768740
#% 
#!
  
#*Metabolomic database annotations viaquery of elemental compositions: Mass accuracy is insufficient even at less than 1 ppm.
#@Tobias Kind,Oliver Fiehn
#t2006
#cBMC Bioinformatics
#index768741
#% 
#!
  
#*GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environments.
#@S. A. Kirov,X. Peng,E. Baker,D. Schmoyer,B. Zhang,J. Snoddy
#t2005
#cBMC Bioinformatics
#index768742
#% 
#!
  
#*A methodology for the structural and functional analysis of signaling and regulatory networks.
#@Steffen Klamt,Julio Saez-Rodriguez,Jonathan A. Lindquist,Luca Simeoni,Ernst Dieter Gilles
#t2006
#cBMC Bioinformatics
#index768743
#% 
#!
  
#*Evaluating eukaryotic secreted protein prediction.
#@Eric W. Klee,Lynda B. M. Ellis
#t2005
#cBMC Bioinformatics
#index768744
#% 
#!
  
#*RSEARCH: Finding homologs of single structured RNA sequences.
#@Robert J. Klein,Sean R. Eddy
#t2003
#cBMC Bioinformatics
#index768745
#% 
#!
  
#*A web services choreography scenario for interoperating bioinformatics applications.
#@Remko de Knikker,Youjun Guo,Jin-long Li,Albert K. H. Kwan,Kevin Y. Yip,David W. Cheung,Kei-Hoi Cheung
#t2004
#cBMC Bioinformatics
#index768746
#% 
#!
  
#*Quality control for terms and definitions in ontologies and taxonomies.
#@Jacob Köhler,Katherine Munn,Alexander Rüegg,Andre Skusa,Barry Smith
#t2006
#cBMC Bioinformatics
#index768747
#% 
#!
  
#*- a framework for the functional interpretation of high-throughput experiments.
#@Felix Kokocinski,Nicolas Delhomme,Gunnar Wrobel,Lars Hummerich,Grischa Toedt,Peter Lichter
#t2005
#cBMC Bioinformatics
#index768748
#% 
#!
  
#*Discovering functional gene expression patterns in the metabolic network of with wavelets transforms.
#@Rainer König,Gunnar Schramm,Marcus Oswald,Hanna Seitz,Sebastian Sager,Marc Zapatka,Gerhard Reinelt,Roland Eils
#t2006
#cBMC Bioinformatics
#index768749
#% 
#!
  
#*Three-parameter lognormal distribution ubiquitously found in cDNA microarray data and its application to parametric data treatment.
#@Tomokazu Konishi
#t2004
#cBMC Bioinformatics
#index768750
#% 
#!
  
#*Correction: Three-parameter lognormal distribution ubiquitously found in cDNA microarray data and its application to parametric data treatment.
#@Tomokazu Konishi
#t2004
#cBMC Bioinformatics
#index768751
#% 
#!
  
#*Gene finding in novel genomes.
#@Ian Korf
#t2004
#cBMC Bioinformatics
#index768752
#% 
#!
  
#*The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function.
#@Jan Kosinski,Marcin Feder,Janusz M. Bujnicki
#t2005
#cBMC Bioinformatics
#index768753
#% 
#!
  
#*AutoFACT: An matic unctional nnotation and lassification ool.
#@Liisa B. Koski,Michael W. Gray,B. Franz Lang,Gertraud Burger
#t2005
#cBMC Bioinformatics
#index768754
#% 
#!
  
#*Microarray results: how accurate are they?
#@Ravi Kothapalli,Sean J. Yoder,Shrikant Mane,Thomas P. Loughran Jr
#t2002
#cBMC Bioinformatics
#index768755
#% 
#!
  
#*A note on generalized Genome Scan Meta-Analysis statistics.
#@James A. Koziol,Anne C. Feng
#t2005
#cBMC Bioinformatics
#index768756
#% 
#!
  
#*Large scale hierarchical clustering of protein sequences.
#@Antje Krause,Jens Stoye,Martin Vingron
#t2005
#cBMC Bioinformatics
#index768757
#% 
#!
  
#*ESTIMA, a tool for EST management in a multi-project environment.
#@Charu G. Kumar,Richard LeDuc,George Gong,Levan Roinishivili,Harris A. Lewin,Lei Liu
#t2004
#cBMC Bioinformatics
#index768758
#% 
#!
  
#*Graphical representation of ribosomal RNA probe accessibility data using ARB software package.
#@Yadhu Kumar,Ralf Westram,Sebastian Behrens,Bernhard Fuchs,Frank Oliver Glöckner,Rudolf Amann,Harald Meier,Wolfgang Ludwig
#t2005
#cBMC Bioinformatics
#index768759
#% 
#!
  
#*Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package.
#@Yadhu Kumar,Ralf Westram,Peter Kipfer,Harald Meier,Wolfgang Ludwig
#t2006
#cBMC Bioinformatics
#index768760
#% 
#!
  
#*Clustering the annotation space of proteins.
#@Victor Kunin,Christos A. Ouzounis
#t2005
#cBMC Bioinformatics
#index768761
#% 
#!
  
#*Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking of -adenosylmethionine to three crystal structures.
#@Michal A. Kurowski,Joanna M. Sasin,Marcin Feder,Janusz Debski,Janusz M. Bujnicki
#t2003
#cBMC Bioinformatics
#index768762
#% 
#!
  
#*A factor analysis model for functional genomics.
#@Rafal Kustra,Romy Shioda,Mu Zhu
#t2006
#cBMC Bioinformatics
#index768763
#% 
#!
  
#*microdissection of microarray data from heterogeneous cell populations.
#@Harri Lähdesmäki,Ilya Shmulevich,Valerie Dunmire,Olli Yli-Harja,Wei Zhang
#t2005
#cBMC Bioinformatics
#index768764
#% 
#!
  
#*A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets.
#@Carmen Lai,Marcel J. T. Reinders,Laura J. van't Veer,Lodewyk F. A. Wessels
#t2006
#cBMC Bioinformatics
#index768765
#% 
#!
  
#*Computing expectation values for RNA motifs using discrete convolutions.
#@André Lambert,Matthieu Legendre,Jean-Fred Fontaine,Daniel Gautheret
#t2005
#cBMC Bioinformatics
#index768766
#% 
#!
  
#*A computational approach to discovering the functions of bacterial phytochromes by analysis of homolog distributions.
#@Tilman Lamparter
#t2006
#cBMC Bioinformatics
#index768767
#% 
#!
  
#*A standard curve based method for relative real time PCR data processing.
#@Alexey Larionov,Andreas Krause,William Miller
#t2005
#cBMC Bioinformatics
#index768768
#% 
#!
  
#*Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns".
#@Etienne Larsabal,Antoine Danchin
#t2005
#cBMC Bioinformatics
#index768769
#% 
#!
  
#*EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance.
#@Thomas Schou Larsen,Anders Krogh
#t2003
#cBMC Bioinformatics
#index768770
#% 
#!
  
#*Considerations when using the significance analysis of microarrays (SAM) algorithm.
#@Ola Larsson,Claes Wahlestedt,James A. Timmons
#t2005
#cBMC Bioinformatics
#index768771
#% 
#!
  
#*Kalign - an accurate and fast multiple sequence alignment algorithm.
#@Timo Lassmann,Erik L. L. Sonnhammer
#t2005
#cBMC Bioinformatics
#index768772
#% 
#!
  
#*ErmineJ: Tool for functional analysis of gene expression data sets.
#@Homin K. Lee,William Braynen,Kiran Keshav,Paul Pavlidis
#t2005
#cBMC Bioinformatics
#index768773
#% 
#!
  
#*GObar: A Gene Ontology based analysis and visualization tool for gene sets.
#@Jason S. M. Lee,Gurpreet Katari,Ravi Sachidanandam
#t2005
#cBMC Bioinformatics
#index768774
#% 
#!
  
#*The yeast kinome displays scale free topology with functional hub clusters.
#@Robin E. C. Lee,Lynn A. Megeney
#t2005
#cBMC Bioinformatics
#index768775
#% 
#!
  
#*BioWarehouse: a bioinformatics database warehouse toolkit.
#@Thomas J. Lee,Yannick Pouliot,Valerie Wagner,Priyanka Gupta,David W. J. Stringer-Calvert,Jessica D. Tenenbaum,Peter D. Karp
#t2006
#cBMC Bioinformatics
#index768776
#% 
#!
  
#*Components of the antigen processing and presentation pathway revealed by gene expression microarray analysis following B cell antigen receptor (BCR) stimulation.
#@Jamie A. Lee,Robert S. Sinkovits,Dennis Mock,Eva L. Rab,Jennifer Cai,Peng Yang,Brian Saunders,Robert C. Hsueh,Sangdun Choi,Shankar Subramaniam,Richard H. Scheuermann
#t2006
#cBMC Bioinformatics
#index768777
#% 
#!
  
#*DEDB: a database of exons in splicing graph form.
#@Bernett T. K. Lee,Tin Wee Tan,Shoba Ranganathan
#t2004
#cBMC Bioinformatics
#index768778
#% 
#!
  
#*Exploring supervised and unsupervised methods to detect topics in biomedical text.
#@Minsuk Lee,Weiqing Wang,Hong Yu
#t2006
#cBMC Bioinformatics
#index768779
#% 
#!
  
#*An SVM-based system for predicting protein subnuclear localizations.
#@Zhengdeng Lei,Yang Dai
#t2005
#cBMC Bioinformatics
#index768780
#% 
#!
  
#*MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states.
#@Gaëlle Lelandais,Philippe Marc,Pierre Vincens,Claude Jacq,Stéphane Vialette
#t2004
#cBMC Bioinformatics
#index768781
#% 
#!
  
#*Assessing local structural perturbations in proteins.
#@Martin A. Lema,Julian Echave
#t2005
#cBMC Bioinformatics
#index768782
#% 
#!
  
#*Interaction profile-based protein classification of death domain.
#@Drew Lett,Michael Hsing,Frederic Pio
#t2004
#cBMC Bioinformatics
#index768783
#% 
#!
  
#*Statistical significance for hierarchical clustering in genetic association and microarray expression studies.
#@Mark A. Levenstien,Yaning Yang,Jürg Ott
#t2003
#cBMC Bioinformatics
#index768784
#% 
#!
  
#*Feature selection and nearest centroid classification for protein mass spectrometry.
#@Ilya Levner
#t2005
#cBMC Bioinformatics
#index768785
#% 
#!
  
#*Probabilistic annotation of protein sequences based on functional classifications.
#@Emmanuel D. Levy,Christos A. Ouzounis,Walter R. Gilks,Benjamin Audit
#t2005
#cBMC Bioinformatics
#index768786
#% 
#!
  
#*Construction of a nasopharyngeal carcinoma 2D/MS repository with Open Source XML Database - Xindice.
#@Feng Li,Maoyu Li,Zhiqiang Xiao,Pengfei Zhang,Jianling Li,Zhuchu Chen
#t2006
#cBMC Bioinformatics
#index768787
#% 
#!
  
#*discovery of human natural antisense transcripts.
#@Yuan-Yuan Li,Lei Qin,Zong-Ming Guo,Lei Liu,Hao Xu,Pei Hao,Jiong Su,Yixiang Shi,Wei-Zhong He,Yi-Xue Li
#t2006
#cBMC Bioinformatics
#index768788
#% 
#!
  
#*Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling.
#@Xia Li,Shaoqi Rao,Wei Jiang,Chuanxing Li,Yun Xiao,Zheng Guo,Qingpu Zhang,Lihong Wang,Lei Du,Jing Li,Li Li,Tianwen Zhang,Qing K. Wang
#t2006
#cBMC Bioinformatics
#index768789
#% 
#!
  
#*Analysis of oligonucleotide array experiments with repeated measures using mixed models.
#@Hao Li,Constance L. Wood,Thomas V. Getchell,Marilyn L. Getchell,Arnold J. Stromberg
#t2004
#cBMC Bioinformatics
#index768790
#% 
#!
  
#*Identification of gene expression patterns using planned linear contrasts.
#@Hao Li,Constance L. Wood,Yushu Liu,Thomas V. Getchell,Marilyn L. Getchell,Arnold J. Stromberg
#t2006
#cBMC Bioinformatics
#index768791
#% 
#!
  
#*MAGIC-SPP: a database-driven DNA sequence processing package with associated management tools.
#@Chun Liang,Feng Sun,Haiming Wang,Junfeng Qu,Robert M. Freeman Jr,Lee H. Pratt,Marie-Michèle Cordonnier-Pratt
#t2006
#cBMC Bioinformatics
#index768792
#% 
#!
  
#*Network analysis of metabolic enzyme evolution in .
#@Sara Light,Per Kraulis
#t2004
#cBMC Bioinformatics
#index768793
#% 
#!
  
#*Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification.
#@Li-Hsieh Lin,Hsiao-Ching Lee,Wen-Hsiung Li,Bor-Sen Chen
#t2005
#cBMC Bioinformatics
#index768794
#% 
#!
  
#*A joint model for nonparametric functional mapping of longitudinal trajectory and time-to-event.
#@Min Lin,Rongling Wu
#t2006
#cBMC Bioinformatics
#index768795
#% 
#!
  
#*Information assessment on predicting protein-protein interactions.
#@Nan Lin,Baolin Wu,Ronald Jansen,Mark Gerstein,Hongyu Zhao
#t2004
#cBMC Bioinformatics
#index768796
#% 
#!
  
#*Are scale-free networks robust to measurement errors?
#@Nan Lin,Hongyu Zhao
#t2005
#cBMC Bioinformatics
#index768797
#% 
#!
  
#*A combinational feature selection and ensemble neural network method for classification of gene expression data.
#@Bing Liu,Qinghua Cui,Tianzi Jiang,Songde Ma
#t2004
#cBMC Bioinformatics
#index768798
#% 
#!
  
#*Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation.
#@Donglin Liu,Joel H. Graber
#t2006
#cBMC Bioinformatics
#index768799
#% 
#!
  
#*DynGO: a tool for visualizing and mining of Gene Ontology and its associations.
#@Hongfang Liu,Zhang-Zhi Hu,Cathy H. Wu
#t2005
#cBMC Bioinformatics
#index768800
#% 
#!
  
#*CoSMoS: Conserved Sequence Motif Search in the proteome.
#@Xiao I. Liu,Neeraj Korde,Ursula Jakob,Lars I. Leichert
#t2006
#cBMC Bioinformatics
#index768801
#% 
#!
  
#*An Entropy-based gene selection method for cancer classification using microarray data.
#@Xiaoxing Liu,Arun Krishnan,Adrian Mondry
#t2005
#cBMC Bioinformatics
#index768802
#% 
#!
  
#*Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models.
#@Wen Liu,Xiangshan Meng,Qiqi Xu,Darren R. Flower,Tongbin Li
#t2006
#cBMC Bioinformatics
#index768803
#% 
#!
  
#*Phase analysis of circadian-related genes in two tissues.
#@Delong Liu,Shyamal D. Peddada,Leping Li,Clarice R. Weinberg
#t2006
#cBMC Bioinformatics
#index768804
#% 
#!
  
#*Multiclass discovery in array data.
#@Yingchun Liu,Markus Ringnér
#t2004
#cBMC Bioinformatics
#index768805
#% 
#!
  
#*Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein.
#@Jiajian Liu,Gary D. Stormo
#t2005
#cBMC Bioinformatics
#index768806
#% 
#!
  
#*Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments.
#@Hua Liu,Sergey Tarima,Aaron S. Borders,Thomas V. Getchell,Marilyn L. Getchell,Arnold J. Stromberg
#t2005
#cBMC Bioinformatics
#index768807
#% 
#!
  
#*Principal component analysis for predicting transcription-factor binding motifs from array-derived data.
#@Yunlong Liu,Matthew P. Vincenti,Hiroki Yokota
#t2005
#cBMC Bioinformatics
#index768808
#% 
#!
  
#*A method for aligning RNA secondary structures and its application to RNA motif detection.
#@Jianghui Liu,Jason Tsong-Li Wang,Jun Hu,Bin Tian
#t2005
#cBMC Bioinformatics
#index768809
#% 
#!
  
#*A computational approach for ordering signal transduction pathway components from genomics and proteomics Data.
#@Yin Liu,Hongyu Zhao
#t2004
#cBMC Bioinformatics
#index768810
#% 
#!
  
#*Visualizing the genome: techniques for presenting human genome data and annotations.
#@Ann E. Loraine,Gregg A. Helt
#t2002
#cBMC Bioinformatics
#index768811
#% 
#!
  
#*Simplifying gene trees for easier comprehension.
#@Paul-Ludwig Lott,Marvin Mundry,Christoph Sassenberg,Stefan Lorkowski,Georg Fuellen
#t2006
#cBMC Bioinformatics
#index768812
#% 
#!
  
#*stam - a Bioconductor compliant R package for structured analysis of microarray data.
#@Claudio Lottaz,Rainer Spang
#t2005
#cBMC Bioinformatics
#index768813
#% 
#!
  
#*Can Zipf's law be adapted to normalize microarrays?
#@Timothy Lu,Christine M. Costello,Peter J. P. Croucher,Robert Häsler,Günther Deuschl,Stefan Schreiber
#t2005
#cBMC Bioinformatics
#index768814
#% 
#!
  
#*Incremental genetic K-means algorithm and its application in gene expression data analysis.
#@Yi Lu,Shiyong Lu,Farshad Fotouhi,Youping Deng,Susan J. Brown
#t2004
#cBMC Bioinformatics
#index768815
#% 
#!
  
#*K-SPMM: a database of murine spermatogenic promoters modules & motifs.
#@Yi Lu,Adrian E. Platts,G. Charles Ostermeier,Stephen A. Krawetz
#t2006
#cBMC Bioinformatics
#index768816
#% 
#!
  
#*Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach.
#@Jun Lu,John K. Tomfohr,Thomas B. Kepler
#t2005
#cBMC Bioinformatics
#index768817
#% 
#!
  
#*Automatic annotation of protein motif function with Gene Ontology terms.
#@Xinghua Lu,Chengxiang Zhai,Vanathi Gopalakrishnan,Bruce G. Buchanan
#t2004
#cBMC Bioinformatics
#index768818
#% 
#!
  
#*Bayesian coestimation of phylogeny and sequence alignment.
#@Gerton Lunter,István Miklós,Alexei Drummond,Jens Ledet Jensen,Jotun Hein
#t2005
#cBMC Bioinformatics
#index768819
#% 
#!
  
#*pdb-care (PDB CArbohydrate REsidue check): a program to support annotation of complex carbohydrate structures in PDB files.
#@Thomas Lütteke,Claus-Wilhelm von der Lieth
#t2004
#cBMC Bioinformatics
#index768820
#% 
#!
  
#*Tests for finding complex patterns of differential expression in cancers: towards individualized medicine.
#@James Lyons-Weiler,Satish Patel,Michael J. Becich,Tony E. Godfrey
#t2004
#cBMC Bioinformatics
#index768821
#% 
#!
  
#*Hierarchical structure and modules in the transcriptional regulatory network revealed by a new top-down approach.
#@Hongwu Ma,Jan Buer,An-Ping Zeng
#t2004
#cBMC Bioinformatics
#index768822
#% 
#!
  
#*Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural networks.
#@Qicheng Ma,Gung-Wei Chirn,Richard Cai,Joseph D. Szustakowski,N. R. Nirmala
#t2005
#cBMC Bioinformatics
#index768823
#% 
#!
  
#*Regularized binormal ROC method in disease classificationusing microarray data.
#@Shuangge Ma,Xiao Song,Jian Huang
#t2006
#cBMC Bioinformatics
#index768824
#% 
#!
  
#*Using large-scale perturbations in gene network reconstruction.
#@Thomas MacCarthy,Andrew Pomiankowski,Robert Seymour
#t2005
#cBMC Bioinformatics
#index768825
#% 
#!
  
#*An improved map of conserved regulatory sites for .
#@Kenzie D. MacIsaac,Ting Wang,D. Benjamin Gordon,David K. Gifford,Gary D. Stormo,Ernest Fraenkel
#t2006
#cBMC Bioinformatics
#index768826
#% 
#!
  
#*cuticleDB: a relational database of Arthropod cuticular proteins.
#@Christiana K. Magkrioti,Ioannis C. Spyropoulos,Vassiliki A. Iconomidou,Judith H. Willis,Stavros J. Hamodrakas
#t2004
#cBMC Bioinformatics
#index768827
#% 
#!
  
#*Sequence variation in ligand binding sites in proteins.
#@Thomas J. Magliery,Lynne Regan
#t2005
#cBMC Bioinformatics
#index768828
#% 
#!
  
#*Construction and validation of the APOCHIP, a spotted oligo-microarray for the study of beta-cell apoptosis.
#@Nils E. Magnusson,Alessandra K. Cardozo,Mogens Kruhøffer,Decio L. Eizirik,Torben F. Ørntoft,Jens L. Jensen
#t2005
#cBMC Bioinformatics
#index768829
#% 
#!
  
#*Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models.
#@Shaun Mahony,James O. McInerney,Terry J. Smith,Aaron Golden
#t2004
#cBMC Bioinformatics
#index768830
#% 
#!
  
#*Recrafting the neighbor-joining method.
#@Thomas Mailund,Gerth Stølting Brodal,Rolf Fagerberg,Christian N. S. Pedersen,Derek Phillips
#t2006
#cBMC Bioinformatics
#index768831
#% 
#!
  
#*CoaSim: A flexible environment for simulating genetic data under coalescent models.
#@Thomas Mailund,Mikkel H. Schierup,Christian N. S. Pedersen,Peter J. M. Mechlenborg,Jesper N. Madsen,Leif Schauser
#t2005
#cBMC Bioinformatics
#index768832
#% 
#!
  
#*AbMiner: A bioinformatic resource on available monoclonal antibodies and corresponding gene identifiers for genomic, proteomic, and immunologic studies.
#@Sylvia M. Major,Satoshi Nishizuka,Daisaku Morita,Rick Rowland,Margot Sunshine,Uma T. Shankavaram,Frank Washburn,Daniel Asin,Hosein Kouros-Mehr,David W. Kane,John N. Weinstein
#t2006
#cBMC Bioinformatics
#index768833
#% 
#!
  
#*Efficient decoding algorithms for generalized hidden Markov model gene finders.
#@William H. Majoros,Mihaela Pertea,Arthur L. Delcher,Steven Salzberg
#t2005
#cBMC Bioinformatics
#index768834
#% 
#!
  
#*An empirical analysis of training protocols for probabilistic gene finders.
#@William H. Majoros,Steven Salzberg
#t2004
#cBMC Bioinformatics
#index768835
#% 
#!
  
#*An empirical analysis of training protocols for probabilistic gene finders.
#@William H. Majoros,Steven Salzberg
#t2005
#cBMC Bioinformatics
#index768836
#% 
#!
  
#*PALSSE: A program to delineate linear secondary structural elements from protein structures.
#@Indraneel Majumdar,S. Sri Krishna,Nick V. Grishin
#t2005
#cBMC Bioinformatics
#index768837
#% 
#!
  
#*2DDB - a bioinformatics solution for analysis of quantitative proteomics data.
#@Lars Malmström,György Marko-Varga,Gunilla Westergren-Thorsson,Thomas Laurell,Johan Malmström
#t2006
#cBMC Bioinformatics
#index768838
#% 
#!
  
#*tacg - a for DNA.
#@Harry Mangalam
#t2002
#cBMC Bioinformatics
#index768839
#% 
#!
  
#*PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability.
#@Mindaugas Margelevicius,Ceslovas Venclovas
#t2005
#cBMC Bioinformatics
#index768840
#% 
#!
  
#*MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
#@Voichita D. Marinescu,Isaac S. Kohane,Alberto Riva
#t2005
#cBMC Bioinformatics
#index768841
#% 
#!
  
#*GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes.
#@David M. A. Martin,Matthew Berriman,Geoffrey J. Barton
#t2004
#cBMC Bioinformatics
#index768842
#% 
#!
  
#*REtools: A laboratory program for restriction enzyme work: enzyme selection and reaction condition assistance.
#@Patrick Martin,Kim E. Boulukos,Philippe Pognonec
#t2006
#cBMC Bioinformatics
#index768843
#% 
#!
  
#*Rank Difference Analysis of Microarrays (RDAM), a novel approach to statistical analysis of microarray expression profiling data.
#@Dietmar E. Martin,Philippe Demougin,Michael N. Hall,Michel Bellis
#t2004
#cBMC Bioinformatics
#index768844
#% 
#!
  
#*Spotting effect in microarray experiments.
#@Tristan Mary-Huard,Jean-Jacques Daudin,Stéphane Robin,Frédérique Bitton,Eric Cabannes,Pierre Hilson
#t2004
#cBMC Bioinformatics
#index768845
#% 
#!
  
#*Parameter estimation for stiff equations of biosystems using radial basis function networks.
#@Yoshiya Matsubara,Shinichi Kikuchi,Masahiro Sugimoto,Masaru Tomita
#t2006
#cBMC Bioinformatics
#index768846
#% 
#!
  
#*Predicting survival outcomes using subsets of significant genes in prognostic marker studies with microarrays.
#@Shigeyuki Matsui
#t2006
#cBMC Bioinformatics
#index768847
#% 
#!
  
#*Application of machine learning in SNP discovery.
#@Lakshmi K. Matukumalli,John J. Grefenstette,David L. Hyten,Ik-Young Choi,Perry B. Cregan,Curtis P. Van Tassell
#t2006
#cBMC Bioinformatics
#index768848
#% 
#!
  
#*Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome.
#@Olga V. Matveeva,Brian T. Foley,Vladimir A. Nemtsov,Raymond F. Gesteland,Senya Matsufuji,John F. Atkins,Aleksey Y. Ogurtsov,Svetlana A. Shabalina
#t2004
#cBMC Bioinformatics
#index768849
#% 
#!
  
#*MARS: Microarray analysis, retrieval, and storage system.
#@Michael Maurer,Robert Molidor,Alexander Sturn,Jürgen Hartler,Hubert Hackl,Gernot Stocker,Andreas Prokesch,Marcel Scheideler,Zlatko Trajanoski
#t2005
#cBMC Bioinformatics
#index768850
#% 
#!
  
#*Linking enzyme sequence to function using conserved property difference locator to identify and annotate positions likely to control specific functionality.
#@Kimberly M. Mayer,Sean R. McCorkle,John Shanklin
#t2005
#cBMC Bioinformatics
#index768851
#% 
#!
  
#*Computational identification of strain-, species- and genus-specific proteins.
#@Raja Mazumder,Darren A. Natale,Sudhir Murthy,Rathi Thiagarajan,Cathy H. Wu
#t2005
#cBMC Bioinformatics
#index768852
#% 
#!
  
#*Effects of filtering by Present call on analysis of microarray experiments.
#@Jeanette N. McClintick,Howard J. Edenberg
#t2006
#cBMC Bioinformatics
#index768853
#% 
#!
  
#*Comparative analysis of haplotype association mapping algorithms.
#@Phillip McClurg,Mathew T. Pletcher,Tim Wiltshire,Andrew I. Su
#t2006
#cBMC Bioinformatics
#index768854
#% 
#!
  
#*Human promoter genomic composition demonstrates non-random groupings that reflect general cellular function.
#@Markey C. McNutt,Ron Tongbai,Wenwu Cui,Irene Collins,Wendy J. Freebern,Idalia Montano,Cynthia M. Haggerty,G. V. R. Chandramouli,Kevin Gardner
#t2005
#cBMC Bioinformatics
#index768855
#% 
#!
  
#*PCOGR: Phylogenetic COG ranking as an online tool to judge the specificity of COGs with respect to freely definable groups of organisms.
#@Florian Meereis,Michael Kaufmann
#t2004
#cBMC Bioinformatics
#index768856
#% 
#!
  
#*Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites.
#@Peter Meinicke,Maike Tech,Burkhard Morgenstern,Rainer Merkl
#t2004
#cBMC Bioinformatics
#index768857
#% 
#!
  
#*Optimized Particle Swarm Optimization (OPSO) and its application to artificial neural network training.
#@Michael Meissner,Michael Schmuker,Gisbert Schneider
#t2006
#cBMC Bioinformatics
#index768858
#% 
#!
  
#*arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays.
#@Björn Menten,Filip Pattyn,Katleen De Preter,Piet Robbrecht,Evi Michels,Karen Buysse,Geert Mortier,Anne De Paepe,Steven Van Vooren,Joris Robert Vermeesch,Yves Moreau,Bart De Moor,Stefan Vermeulen,Frank Speleman,Jo Vandesompele
#t2005
#cBMC Bioinformatics
#index768859
#% 
#!
  
#*SIGI: score-based identification of genomic islands.
#@Rainer Merkl
#t2004
#cBMC Bioinformatics
#index768860
#% 
#!
  
#*SeqHound: biological sequence and structure database as a platform for bioinformatics research.
#@Katerina Michalickova,Gary D. Bader,Michel Dumontier,Hao Lieu,Doron Betel,Ruth Isserlin,Christopher W. V. Hogue
#t2002
#cBMC Bioinformatics
#index768861
#% 
#!
  
#*SuperLigands - a database of ligand structures derived from the Protein Data Bank.
#@Elke Michalsky,Mathias Dunkel,Andrean Goede,Robert Preissner
#t2005
#cBMC Bioinformatics
#index768862
#% 
#!
  
#*Discriminative topological features reveal biological network mechanisms.
#@Manuel Middendorf,Etay Ziv,Carter Adams,Jen Hom,Robin Koytcheff,Chaya Levovitz,Gregory Woods,Linda Chen,Chris Wiggins
#t2004
#cBMC Bioinformatics
#index768863
#% 
#!
  
#*A linear memory algorithm for Baum-Welch training.
#@István Miklós,Irmtraud M. Meyer
#t2005
#cBMC Bioinformatics
#index768864
#% 
#!
  
#*How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results.
#@Frank F. Millenaar,John Okyere,Sean T. May,Martijn van Zanten,Laurentius A. C. J. Voesenek,Anton J. M. Peeters
#t2006
#cBMC Bioinformatics
#index768865
#% 
#!
  
#*Prediction of beta-barrel membrane proteins by searching for restricted domains.
#@Oliver Mirus,Enrico Schleiff
#t2005
#cBMC Bioinformatics
#index768866
#% 
#!
  
#*Satellog: A database for the identification and prioritization of satellite repeats in disease association studies.
#@Perseus I. Missirlis,Carri-Lyn R. Mead,Stefanie L. Butland,B. F. Francis Ouellette,Rebecca S. Devon,Blair R. Leavitt,Robert A. Holt
#t2005
#cBMC Bioinformatics
#index768867
#% 
#!
  
#*A restraint molecular dynamics and simulated annealing approach for protein homology modeling utilizing mean angles.
#@Andreas Möglich,Daniel Weinfurtner,Till Maurer,Wolfram Gronwald,Hans Robert Kalbitzer
#t2005
#cBMC Bioinformatics
#index768868
#% 
#!
  
#*T.I.M.S: TaqMan Information Management System, tools to organize data flow in a genotyping laboratory.
#@Stéphanie Monnier,David G. Cox,Tim Albion,Federico Canzian
#t2005
#cBMC Bioinformatics
#index768869
#% 
#!
  
#*Which gene did you mean?
#@Barend Mons
#t2005
#cBMC Bioinformatics
#index768870
#% 
#!
  
#*More robust detection of motifs in coexpressed genes by using phylogenetic information.
#@Pieter Monsieurs,Gert Thijs,Abeer A. Fadda,Sigrid C. J. De Keersmaecker,Jozef Vanderleyden,Bart De Moor,Kathleen Marchal
#t2006
#cBMC Bioinformatics
#index768871
#% 
#!
  
#*The functional importance of disease-associated mutation.
#@Sean D. Mooney,Teri E. Klein
#t2002
#cBMC Bioinformatics
#index768872
#% 
#!
  
#*The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications.
#@John L. Moreland,Apostol Gramada,Oleksandr V. Buzko,Qing Zhang,Philip E. Bourne
#t2005
#cBMC Bioinformatics
#index768873
#% 
#!
  
#*GeneRank: Using search engine technology for the analysis of microarray experiments.
#@Julie L. Morrison,Rainer Breitling,Desmond J. Higham,David R. Gilbert
#t2005
#cBMC Bioinformatics
#index768874
#% 
#!
  
#*GPNN: Power studies and applications of a neural network method for detecting gene-gene interactions in studies of human disease.
#@Alison A. Motsinger,Stephen L. Lee,George Mellick,Marylyn D. Ritchie
#t2006
#cBMC Bioinformatics
#index768875
#% 
#!
  
#*Detecting outliers when fitting data with nonlinear regression - a new method based on robust nonlinear regression and the false discovery rate.
#@Harvey J. Motulsky,Ronald E. Brown
#t2006
#cBMC Bioinformatics
#index768876
#% 
#!
  
#*PREP-Mt: predictive RNA editor for plant mitochondrial genes.
#@Jeffrey P. Mower
#t2005
#cBMC Bioinformatics
#index768877
#% 
#!
  
#*Cancer characterization and feature set extraction by discriminative margin clustering.
#@Kamesh Munagala,Robert Tibshirani,Patrick O. Brown
#t2004
#cBMC Bioinformatics
#index768878
#% 
#!
  
#*A hidden Markov model approach for determining expression from genomic tiling micro arrays.
#@Kasper Munch,Paul P. Gardner,Peter Arctander,Anders Krogh
#t2006
#cBMC Bioinformatics
#index768879
#% 
#!
  
#*Amplification of the Gene Ontology annotation of Affymetrix probe sets.
#@Enrique M. Muro,Carolina Perez-Iratxeta,Miguel A. Andrade-Navarro
#t2006
#cBMC Bioinformatics
#index768880
#% 
#!
  
#*Chemistry in Bioinformatics.
#@Peter Murray-Rust,John B. O. Mitchell,Henry S. Rzepa
#t2005
#cBMC Bioinformatics
#index768881
#% 
#!
  
#*Communication and re-use of chemical information in bioscience.
#@Peter Murray-Rust,John B. O. Mitchell,Henry S. Rzepa
#t2005
#cBMC Bioinformatics
#index768882
#% 
#!
  
#*The limit fold change model: A practical approach for selecting differentially expressed genes from microarray data.
#@David M. Mutch,Alvin Berger,Robert Mansourian,Andreas Rytz,Matthew-Alan Roberts
#t2002
#cBMC Bioinformatics
#index768883
#% 
#!
  
#*Genome wide identification of regulatory motifs in Bacillus subtilis.
#@Michael M. Mwangi,Eric D. Siggia
#t2003
#cBMC Bioinformatics
#index768884
#% 
#!
  
#*Visualization-based discovery and analysis of genomic aberrations in microarray data.
#@Chad L. Myers,Xing Chen,Olga G. Troyanskaya
#t2005
#cBMC Bioinformatics
#index768885
#% 
#!
  
#*Clustering under the line graph transformation: application to reaction network.
#@Jose C. Nacher,Nobuhisa Ueda,Takuji Yamada,Minoru Kanehisa,Tatsuya Akutsu
#t2004
#cBMC Bioinformatics
#index768886
#% 
#!
  
#*Comparison of computational methods for identifying translation initiation sites in EST data.
#@Afshin Nadershahi,Scott C. Fahrenkrug,Lynda B. M. Ellis
#t2004
#cBMC Bioinformatics
#index768887
#% 
#!
  
#*A novel Mixture Model Method for identification of differentially expressed genes from DNA microarray data.
#@Kayvan Najarian,Maryam Zaheri,Ali Ajdari Rad,Siamak Najarian,Javad Dargahi
#t2004
#cBMC Bioinformatics
#index768888
#% 
#!
  
#*MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data.
#@Mahendra Navarange,Laurence Game,Derek Fowler,Vihar Wadekar,Helen Banks,Nicola Cooley,Fatimah Rahman,Justin Hinshelwood,Peter Broderick,Helen C. Causton
#t2005
#cBMC Bioinformatics
#index768889
#% 
#!
  
#*BioBuilder as a database development and functional annotation platform for proteins.
#@J. Daniel Navarro,Naveen Talreja,Suraj Peri,B. M. Vrushabendra,B. P. Rashmi,N. Padma,Vineeth Surendranath,Chandra Kiran Jonnalagadda,P. S. Kousthub,Nandan Deshpande,K. Shanker,Akhilesh Pandey
#t2004
#cBMC Bioinformatics
#index768890
#% 
#!
  
#*Statistical extraction of -regulatory modules using exhaustive assessment of local word frequency.
#@Anna G. Nazina,Dmitri A. Papatsenko
#t2003
#cBMC Bioinformatics
#index768891
#% 
#!
  
#*eL-DASionator: an LDAS upload file generator.
#@Vincent Nègre,Christoph Grunau
#t2004
#cBMC Bioinformatics
#index768892
#% 
#!
  
#*Two-part permutation tests for DNA methylation and microarray data.
#@Markus Neuhäuser,Tanja Boes,Karl-Heinz Jöckel
#t2005
#cBMC Bioinformatics
#index768893
#% 
#!
  
#*Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model.
#@Andrew F. Neuwald,Jun S. Liu
#t2004
#cBMC Bioinformatics
#index768894
#% 
#!
  
#*Alternative splicing and protein function.
#@A. D. Neverov,Irena I. Artamonova,Ramil N. Nurtdinov,Dmitrij Frishman,Mikhail S. Gelfand,Andrey A. Mironov
#t2005
#cBMC Bioinformatics
#index768895
#% 
#!
  
#*Approaching the taxonomic affiliation of unidentified sequences in public databases - an example from the mycorrhizal fungi.
#@R. Henrik Nilsson,Erik Kristiansson,Martin Ryberg,Karl-Henrik Larsson
#t2005
#cBMC Bioinformatics
#index768896
#% 
#!
  
#*galaxieEST: addressing EST identity through automated phylogenetic analysis.
#@R. Henrik Nilsson,Balaji Rajashekar,Karl-Henrik Larsson,Björn M. Ursing
#t2004
#cBMC Bioinformatics
#index768897
#% 
#!
  
#*Reproducibility of gene expression across generations of Affymetrix microarrays.
#@Ashish Nimgaonkar,Despina Sanoudou,Atul J. Butte,Judith N. Haslett,Louis M. Kunkel,Alan H. Beggs,Isaac S. Kohane
#t2003
#cBMC Bioinformatics
#index768898
#% 
#!
  
#*GATA: a graphic alignment tool for comparative sequence analysis.
#@David A. Nix,Michael B. Eisen
#t2005
#cBMC Bioinformatics
#index768899
#% 
#!
  
#*Improved hit criteria for DNA local alignment.
#@Laurent Noé,Gregory Kucherov
#t2004
#cBMC Bioinformatics
#index768900
#% 
#!
  
#*Avoiding inconsistencies over time and tracking difficulties in Applied Biosystems AB1700/Panther probe-to-gene annotations.
#@Sebastian Noth,Arndt Benecke
#t2005
#cBMC Bioinformatics
#index768901
#% 
#!
  
#*Proteins with two SUMO-like domains in chromatin-associated complexes: The RENi (Rad60-Esc2-NIP45) family.
#@Maria Novatchkova,Andreas Bachmair,Birgit Eisenhaber,Frank Eisenhaber
#t2005
#cBMC Bioinformatics
#index768902
#% 
#!
  
#*The Molecular Pages of the mesotelencephalic dopamine consortium (DopaNet).
#@Nicolas Le Novère,Marco Donizelli
#t2004
#cBMC Bioinformatics
#index768903
#% 
#!
  
#*An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments.
#@Eugene Novikov,Emmanuel Barillot
#t2005
#cBMC Bioinformatics
#index768904
#% 
#!
  
#*Neural network analysis of lymphoma microarray data: prognosis and diagnosis near-perfect.
#@Michael C. O'Neill,Li Song
#t2003
#cBMC Bioinformatics
#index768905
#% 
#!
  
#*No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions.
#@Marc N. Offman,Ramil N. Nurtdinov,Mikhail S. Gelfand,Dmitrij Frishman
#t2004
#cBMC Bioinformatics
#index768906
#% 
#!
  
#*ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related proteins.
#@Tomas Ohlson,Arne Elofsson
#t2005
#cBMC Bioinformatics
#index768907
#% 
#!
  
#*Tools for loading MEDLINE into a local relational database.
#@Diane E. Oliver,Gaurav Bhalotia,Ariel S. Schwartz,Russ B. Altman,Marti A. Hearst
#t2004
#cBMC Bioinformatics
#index768908
#% 
#!
  
#*Handling multiple testing while interpreting microarrays with the Gene Ontology Database.
#@Michael V. Osier,Hongyu Zhao,Kei-Hoi Cheung
#t2004
#cBMC Bioinformatics
#index768909
#% 
#!
  
#*A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for .
#@Svetlana Pacifico,Guozhen Liu,Stephen Guest,Jodi R. Parrish,Farshad Fotouhi,Russell L. Finley Jr.
#t2006
#cBMC Bioinformatics
#index768910
#% 
#!
  
#*A Taxonomic Search Engine: Federating taxonomic databases using web services.
#@Roderic D. M. Page
#t2005
#cBMC Bioinformatics
#index768911
#% 
#!
  
#*The : a power and sample size atlas for microarray experimental design and research.
#@Grier P. Page,Jode W. Edwards,Gary L. Gadbury,Prashanth Yelisetti,Jelai Wang,Prinal Trivedi,David B. Allison
#t2006
#cBMC Bioinformatics
#index768912
#% 
#!
  
#*An edit script for taxonomic classifications.
#@Roderic D. M. Page,Gabriel Valiente
#t2005
#cBMC Bioinformatics
#index768913
#% 
#!
  
#*Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation.
#@Tapio Pahikkala,Filip Ginter,Jorma Boberg,Jouni Järvinen,Tapio Salakoski
#t2005
#cBMC Bioinformatics
#index768914
#% 
#!
  
#*Taxonomic colouring of phylogenetic trees of protein sequences.
#@Gareth Palidwor,Emmanuel G. Reynaud,Miguel A. Andrade-Navarro
#t2006
#cBMC Bioinformatics
#index768915
#% 
#!
  
#*Constraint Logic Programming approach to protein structure prediction.
#@Alessandro Dal Palù,Agostino Dovier,Federico Fogolari
#t2004
#cBMC Bioinformatics
#index768916
#% 
#!
  
#*PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for .
#@Deyun Pan,Ning Sun,Kei-Hoi Cheung,Zhong Guan,Ligeng Ma,Matthew Holford,Xingwang Deng,Hongyu Zhao
#t2003
#cBMC Bioinformatics
#index768917
#% 
#!
  
#*SUPFAM: A database of sequence superfamilies of protein domains.
#@Shashi B. Pandit,Rana Bhadra,V. S. Gowri,S. Balaji,B. Anand,Narayanaswamy Srinivasan
#t2004
#cBMC Bioinformatics
#index768918
#% 
#!
  
#*SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution.
#@Andy Pang,Andrew D. Smith,Paulo A. S. Nuin,Elisabeth R. M. Tillier
#t2005
#cBMC Bioinformatics
#index768919
#% 
#!
  
#*Statistical distributions of optimal global alignment scores of random protein sequences.
#@Hongxia Pang,Jiaowei Tang,Su-Shing Chen,Shiheng Tao
#t2005
#cBMC Bioinformatics
#index768920
#% 
#!
  
#*Evaluation of normalization methods for microarray data.
#@Taesung Park,Sung-Gon Yi,Sung-Hyun Kang,Seung Yeoun Lee,Yong-Sung Lee,Richard Simon
#t2003
#cBMC Bioinformatics
#index768921
#% 
#!
  
#*Making sense of EST sequences by CLOBBing them.
#@John Parkinson,David B. Guiliano,Mark L. Blaxter
#t2002
#cBMC Bioinformatics
#index768922
#% 
#!
  
#*XcisClique: analysis of regulatory bicliques.
#@Amrita Pati,Cecilia Vasquez-Robinet,Lenwood S. Heath,Ruth Grene,T. M. Murali
#t2006
#cBMC Bioinformatics
#index768923
#% 
#!
  
#*Filtering high-throughput protein-protein interaction data using a combination of genomic features.
#@Ashwini Patil,Haruki Nakamura
#t2005
#cBMC Bioinformatics
#index768924
#% 
#!
  
#*Evolutionary programming as a platform for metabolic engineering.
#@Kiran Raosaheb Patil,Isabel Rocha,Jochen Förster,Jens Nielsen
#t2005
#cBMC Bioinformatics
#index768925
#% 
#!
  
#*Transcriptomic response to differentiation induction.
#@G. W. Patton,Robert M. Stephens,I. A. Sidorov,X. Xiao,Richard A. Lempicki,D. S. Dimitrov,Robert H. Shoemaker,G. Tudor
#t2006
#cBMC Bioinformatics
#index768926
#% 
#!
  
#*A power law global error model for the identification of differentially expressed genes in microarray data.
#@Norman Pavelka,Mattia Pelizzola,Caterina Vizzardelli,Monica Capozzoli,Andrea Splendiani,Francesca Granucci,Paola Ricciardi-Castagnoli
#t2004
#cBMC Bioinformatics
#index768927
#% 
#!
  
#*Bioinformatics analysis of SARS coronavirus genome polymorphism.
#@Gordana Pavlovic-Lazetic,Nenad S. Mitic,Milos V. Beljanski
#t2004
#cBMC Bioinformatics
#index768928
#% 
#!
  
#*Theme discovery from gene lists for identification and viewing of multiple functional groups.
#@Petri Pehkonen,Garry Wong,Petri Törönen
#t2005
#cBMC Bioinformatics
#index768929
#% 
#!
  
#*CLOE: Identification of putative functional relationships among genes by comparison of expression profiles between two species.
#@Maurizio Pellegrino,Paolo Provero,Lorenzo Silengo,Ferdinando Di Cunto
#t2004
#cBMC Bioinformatics
#index768930
#% 
#!
  
#*Length-dependent prediction of protein intrinsic disorder.
#@Kang Peng,Predrag Radivojac,Slobodan Vucetic,A. Keith Dunker,Zoran Obradovic
#t2006
#cBMC Bioinformatics
#index768931
#% 
#!
  
#*Statistical implications of pooling RNA samples for microarray experiments.
#@Xuejun Peng,Constance L. Wood,Eric M. Blalock,Kuey Chu Chen,Philip W. Landfield,Arnold J. Stromberg
#t2003
#cBMC Bioinformatics
#index768932
#% 
#!
  
#*Inconsistencies over time in 5% of NetAffx probe-to-gene annotations.
#@Carolina Perez-Iratxeta,Miguel A. Andrade
#t2005
#cBMC Bioinformatics
#index768933
#% 
#!
  
#*Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method.
#@Björn Peters,Alessandro Sette
#t2005
#cBMC Bioinformatics
#index768934
#% 
#!
  
#*Array-A-Lizer: A serial DNA microarray quality analyzer.
#@Andreas Petri,Jan Fleckner,Mads Wichmann Matthiessen
#t2004
#cBMC Bioinformatics
#index768935
#% 
#!
  
#*A statistical approach for array CGH data analysis.
#@Franck Picard,Stéphane Robin,Marc Lavielle,Christian Vaisse,Jean-Jacques Daudin
#t2005
#cBMC Bioinformatics
#index768936
#% 
#!
  
#*Mathematical design of prokaryotic clone-based microarrays.
#@Bart Pieterse,Elisabeth J. Quirijns,Frank H. J. Schuren,Mariët J. van der Werf
#t2005
#cBMC Bioinformatics
#index768937
#% 
#!
  
#*Variation in structural location and amino acid conservation of functional sites in protein domain families.
#@Birgit Pils,Richard R. Copley,Jörg Schultz
#t2005
#cBMC Bioinformatics
#index768938
#% 
#!
  
#*Integrative investigation of metabolic and transcriptomic data.
#@Pinar Pir,Betül Kirdar,Andrew Hayes,Z. Ilsen Önsan,Kutlu Ö. Ülgen,Stephen G. Oliver
#t2006
#cBMC Bioinformatics
#index768939
#% 
#!
  
#*Integrated web service for improving alignment quality based on segments comparison.
#@Dariusz Plewczynski,Leszek Rychlewski,Yuzhen Ye,Lukasz Jaroszewski,Adam Godzik
#t2004
#cBMC Bioinformatics
#index768940
#% 
#!
  
#*Correlation test to assess low-level processing of high-density oligonucleotide microarray data.
#@Alexander Ploner,Lance D. Miller,Per Hall,Jonas Bergh,Yudi Pawitan
#t2005
#cBMC Bioinformatics
#index768941
#% 
#!
  
#*Benchmarking tools for the alignment of functional noncoding DNA.
#@Daniel A. Pollard,Casey M. Bergman,Jens Stoye,Susan E. Celniker,Michael B. Eisen
#t2004
#cBMC Bioinformatics
#index768942
#% 
#!
  
#*Correction: Benchmarking tools for the alignment of functional noncodingDNA.
#@Daniel A. Pollard,Casey M. Bergman,Jens Stoye,Susan E. Celniker,Michael B. Eisen
#t2004
#cBMC Bioinformatics
#index768943
#% 
#!
  
#*Automation of gene assignments to metabolic pathways using high-throughput expression data.
#@Liviu Popescu,Golan Yona
#t2005
#cBMC Bioinformatics
#index768944
#% 
#!
  
#*Online tool for the discrimination of equi-distributions.
#@Thorsten Pöschel,Cornelius Frömmel,Christoph Gille
#t2003
#cBMC Bioinformatics
#index768945
#% 
#!
  
#*Similarity-based gene detection: using COGs to find evolutionarily-conserved ORFs.
#@Bradford C. Powell,Clyde A. Hutchison III
#t2006
#cBMC Bioinformatics
#index768946
#% 
#!
  
#*An algorithm for the determination and quantification of components of nucleic acid mixtures based on single sequencing reactions.
#@Alexander E. Pozhitkov,Kathryn Stemshorn,Diethard Tautz
#t2005
#cBMC Bioinformatics
#index768947
#% 
#!
  
#*An algorithm and program for finding sequence specific oligo-nucleotide probes for species identification.
#@Alexander E. Pozhitkov,Diethard Tautz
#t2002
#cBMC Bioinformatics
#index768948
#% 
#!
  
#*Molecular phylogeny of the kelch-repeat superfamily reveals an expansion of BTB/kelch proteins in animals.
#@Soren Prag,Josephine C. Adams
#t2003
#cBMC Bioinformatics
#index768949
#% 
#!
  
#*OpWise: Operons aid the identification of differentially expressed genes in bacterial microarray experiments.
#@Morgan N. Price,Adam P. Arkin,Eric J. Alm
#t2006
#cBMC Bioinformatics
#index768950
#% 
#!
  
#*Prediction of indirect interactions in proteins.
#@Peteris Prusis,Staffan Uhlén,Ramona Petrovska,Maris Lapinsh,Jarl E. S. Wikberg
#t2006
#cBMC Bioinformatics
#index768951
#% 
#!
  
#*Identification of signature and primers specific to genus using mismatched patterns of 16S rDNA sequences.
#@Hemant J. Purohit,Dhananjay V. Raje,A. Kapley
#t2003
#cBMC Bioinformatics
#index768952
#% 
#!
  
#*Micro-Mar: a database for dynamic representation of marine microbial biodiversity.
#@Ravindra Pushker,Giuseppe D'Auria,Jose Carlos Alba-Casado,Francisco Rodríguez-Valera
#t2005
#cBMC Bioinformatics
#index768953
#% 
#!
  
#*Genetic interaction motif finding by expectation maximization - a novel statistical model for inferring gene modules from synthetic lethality.
#@Yan Qi,Ping Ye,Joel S. Bader
#t2005
#cBMC Bioinformatics
#index768954
#% 
#!
  
#*A computer simulation analysis of the accuracy of partial genome sequencing and restriction fragment analysis in estimating genetic relationships: an application to papillomavirus DNA sequences.
#@Baozhen Qiao,Ronald M. Weigel
#t2004
#cBMC Bioinformatics
#index768955
#% 
#!
  
#*Evaluation of methods for oligonucleotide array data via quantitative real-time PCR.
#@Li-Xuan Qin,Richard P. Beyer,Francesca N. Hudson,Nancy J. Linford,Daryl E. Morris,Kathleen F. Kerr
#t2006
#cBMC Bioinformatics
#index768956
#% 
#!
  
#*The effects of normalization on the correlation structure of microarray data.
#@Xing Qiu,Andrew I. Brooks,Lev Klebanov,Andrei Yakovlev
#t2005
#cBMC Bioinformatics
#index768957
#% 
#!
  
#*Assessing stability of gene selection in microarray data analysis.
#@Xing Qiu,Yuanhui Xiao,Alexander Gordon,Andrei Yakovlev
#t2006
#cBMC Bioinformatics
#index768958
#% 
#!
  
#*A case study in pathway knowledgebase verification.
#@Stephen A. Racunas,Nigam Shah,Nina V. Fedoroff
#t2006
#cBMC Bioinformatics
#index768959
#% 
#!
  
#*A two-way interface between limited Systems Biology Markup Language and R.
#@Tomas Radivoyevitch
#t2004
#cBMC Bioinformatics
#index768960
#% 
#!
  
#*Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein.
#@Gajendra P. S. Raghava,Joon H. Han
#t2005
#cBMC Bioinformatics
#index768961
#% 
#!
  
#*OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy.
#@G. P. S. Raghava,Stephen M. J. Searle,Patrick C. Audley,Jonathan D. Barber,Geoffrey J. Barton
#t2003
#cBMC Bioinformatics
#index768962
#% 
#!
  
#*Hybrid clustering for microarray image analysis combining intensity and shape features.
#@Jörg Rahnenführer,Daniel Bozinov
#t2004
#cBMC Bioinformatics
#index768963
#% 
#!
  
#*Computational detection of genomic regulatory modules applied to body patterning in the early embryo.
#@Nikolaus Rajewsky,Massimo Vergassola,Ulrike Gaul,Eric D. Siggia
#t2002
#cBMC Bioinformatics
#index768964
#% 
#!
  
#*Visualization of comparative genomic analyses by BLAST score ratio.
#@David A. Rasko,Garry S. A. Myers,Jacques Ravel
#t2005
#cBMC Bioinformatics
#index768965
#% 
#!
  
#*Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics.
#@Jens Reeder,Robert Giegerich
#t2004
#cBMC Bioinformatics
#index768966
#% 
#!
  
#*Effective ambiguity checking in biosequence analysis.
#@Janina Reeder,Peter Steffen,Robert Giegerich
#t2005
#cBMC Bioinformatics
#index768967
#% 
#!
  
#*GeneXplorer: an interactive web application for microarray data visualization and analysis.
#@Christian A. Rees,Janos Demeter,John C. Matese,David Botstein,Gavin Sherlock
#t2004
#cBMC Bioinformatics
#index768968
#% 
#!
  
#*Quality assessment of microarrays: Visualization of spatial artifacts and quantitation of regional biases.
#@Mark Reimers,John N. Weinstein
#t2005
#cBMC Bioinformatics
#index768969
#% 
#!
  
#*Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection.
#@David J. Reiss,Iliana Avila-Campillo,Vesteinn Thorsson,Benno Schwikowski,Timothy Galitski
#t2005
#cBMC Bioinformatics
#index768970
#% 
#!
  
#*Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals.
#@Jeff Reneker,Chi-Ren Shyu
#t2005
#cBMC Bioinformatics
#index768971
#% 
#!
  
#*Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns.
#@Oleg N. Reva,Burkhard Tümmler
#t2004
#cBMC Bioinformatics
#index768972
#% 
#!
  
#*Differentiation of regions with atypical oligonucleotide composition in bacterial genomes.
#@Oleg N. Reva,Burkhard Tümmler
#t2005
#cBMC Bioinformatics
#index768973
#% 
#!
  
#*Optimizationof neural network architecture using genetic programming improvesdetection and modeling of gene-gene interactions in studies of humandiseases.
#@Marylyn D. Ritchie,Bill C. White,Joel S. Parker,Lance W. Hahn,Jason H. Moore
#t2003
#cBMC Bioinformatics
#index768974
#% 
#!
  
#*A SNP-centric database for the investigation of the human genome.
#@Alberto Riva,Isaac S. Kohane
#t2004
#cBMC Bioinformatics
#index768975
#% 
#!
  
#*Evolutionary models for insertions and deletions in a probabilistic modeling framework.
#@Elena Rivas
#t2005
#cBMC Bioinformatics
#index768976
#% 
#!
  
#*Noncoding RNA gene detection using comparative sequence analysis.
#@Elena Rivas,Sean R. Eddy
#t2001
#cBMC Bioinformatics
#index768977
#% 
#!
  
#*FunSpec: a web-based cluster interpreter for yeast.
#@Mark D. Robinson,Jörg Grigull,Naveed Mohammad,Timothy R. Hughes
#t2002
#cBMC Bioinformatics
#index768978
#% 
#!
  
#*Mining gene expression data by interpreting principal components.
#@Joseph C. Roden,Brandon W. King,Diane Trout,Ali Mortazavi,Barbara J. Wold,Christopher E. Hart
#t2006
#cBMC Bioinformatics
#index768979
#% 
#!
  
#*An application of statistics to comparative metagenomics.
#@Beltran Rodriguez-Brito,Forest Rohwer,Robert Edwards
#t2006
#cBMC Bioinformatics
#index768980
#% 
#!
  
#*The gene family of species has a unique combination of S1 and GTP-binding domains.
#@Lisa C. Romero,Thanh Vinh Nguyen,Benoit Deville,Oluwasanmi Ogunjumo,Anthony A. James
#t2004
#cBMC Bioinformatics
#index768981
#% 
#!
  
#*Evolutionary distance estimation and fidelity of pair wise sequence alignment.
#@Michael S. Rosenberg
#t2005
#cBMC Bioinformatics
#index768982
#% 
#!
  
#*Multiple sequence alignment accuracy and evolutionary distance estimation.
#@Michael S. Rosenberg
#t2005
#cBMC Bioinformatics
#index768983
#% 
#!
  
#*Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data.
#@Roald Rossnes,Ingvar Eidhammer,David A. Liberles
#t2005
#cBMC Bioinformatics
#index768984
#% 
#!
  
#*MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays.
#@Eric C. Rouchka,Abdelnaby Khalyfa,Nigel G. F. Cooper
#t2005
#cBMC Bioinformatics
#index768985
#% 
#!
  
#*DNA microarray data and contextual analysis of correlation graphs.
#@Jacques Rougemont,Pascal Hingamp
#t2003
#cBMC Bioinformatics
#index768986
#% 
#!
  
#*CAGER: classification analysis of gene expression regulation using multiple information sources.
#@Jianhua Ruan,Weixiong Zhang
#t2005
#cBMC Bioinformatics
#index768987
#% 
#!
  
#*MILANO - custom annotation of microarray results using automatic literature searches.
#@Ran Rubinstein,Itamar Simon
#t2005
#cBMC Bioinformatics
#index768988
#% 
#!
  
#*GNU polyxmass: a software framework for mass spectrometric simulations of linear (bio-)polymeric analytes.
#@Filippo Rusconi
#t2006
#cBMC Bioinformatics
#index768989
#% 
#!
  
#*An interactive tool for visualization of relationships between gene expression profiles.
#@Peter Ruzanov,Steven J. M. Jones
#t2006
#cBMC Bioinformatics
#index768990
#% 
#!
  
#*Estimates of statistical significance for comparison of individual positions in multiple sequence alignments.
#@Ruslan Sadreyev,Nick V. Grishin
#t2004
#cBMC Bioinformatics
#index768991
#% 
#!
  
#*Protein protein interactions, evolutionary rate, abundance and age.
#@Ramazan Saeed,Charlotte M. Deane
#t2006
#cBMC Bioinformatics
#index768992
#% 
#!
  
#*Feature selection for splice site prediction: A new method using EDA-based feature ranking.
#@Yvan Saeys,Sven Degroeve,Dirk Aeyels,Pierre Rouzé,Yves Van de Peer
#t2004
#cBMC Bioinformatics
#index768993
#% 
#!
  
#*Optimizing amino acid substitution matrices with a local alignment kernel.
#@Hiroto Saigo,Jean-Philippe Vert,Tatsuya Akutsu
#t2006
#cBMC Bioinformatics
#index768994
#% 
#!
  
#*Genome SEGE: A database for 'intronless' genes in eukaryotic genomes.
#@Meena K. Sakharkar,Pandjassarame Kangueane
#t2004
#cBMC Bioinformatics
#index768995
#% 
#!
  
#*The comprehensive updated regulatory network of K-12.
#@Heladia Salgado,Alberto Santos-Zavaleta,Socorro Gama-Castro,Martín Peralta-Gil,Mónica I. Peñaloza-Spínola,Agustino Martínez-Antonio,Peter D. Karp,Julio Collado-Vides
#t2006
#cBMC Bioinformatics
#index768996
#% 
#!
  
#*Multiscale Hy3S: Hybrid stochastic simulation for supercomputers.
#@Howard Salis,Vassilios Sotiropoulos,Yiannis N. Kaznessis
#t2006
#cBMC Bioinformatics
#index768997
#% 
#!
  
#*ROC and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification.
#@Vichetra Sam,Chin-Hsien Tai,Jean Garnier,Jean-François Gibrat,Byungkook Lee,Peter J. Munson
#t2006
#cBMC Bioinformatics
#index768998
#% 
#!
  
#*Low degree metabolites explain essential reactions and enhance modularity in biological networks.
#@Areejit Samal,Shalini Singh,Varun Giri,Sandeep Krishna,Nandula Raghuram,Sanjay Jain
#t2006
#cBMC Bioinformatics
#index768999
#% 
#!
  
#*SPOC: A widely distributed domain associated with cancer, apoptosis and transcription.
#@Luis Sánchez-Pulido,Ana María Rojas,Karel H. M. van Wely,Carlos Martínez-A,Alfonso Valencia
#t2004
#cBMC Bioinformatics
#index769000
#% 
#!
  
#*Local protein structure prediction using discriminative models.
#@Oliver Sander,Ingolf Sommer,Thomas Lengauer
#t2006
#cBMC Bioinformatics
#index769001
#% 
#!
  
#*pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties.
#@Deepak Sarda,Gek Huey Chua,Kuo-Bin Li,Arun Krishnan
#t2005
#cBMC Bioinformatics
#index769002
#% 
#!
  
#*Prediction of a common structural scaffold for proteasome lid, COP9-signalosome and eIF3 complexes.
#@Hartmut Scheel,Kay Hofmann
#t2005
#cBMC Bioinformatics
#index769003
#% 
#!
  
#*Total sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases.
#@Catherine H. Schein,Numan Özgün,Tadahide Izumi,Werner Braun
#t2002
#cBMC Bioinformatics
#index769004
#% 
#!
  
#*Thesaurus-based disambiguation of gene symbols.
#@Bob J. A. Schijvenaars,Barend Mons,Marc Weeber,Martijn J. Schuemie,Erik M. van Mulligen,Hester M. Wain,Jan A. Kors
#t2005
#cBMC Bioinformatics
#index769005
#% 
#!
  
#*DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors.
#@Martin Schmollinger,Kay Nieselt,Michael Kaufmann,Burkhard Morgenstern
#t2004
#cBMC Bioinformatics
#index769006
#% 
#!
  
#*Empirical codon substitution matrix.
#@Adrian Schneider,Gina Cannarozzi,Gaston H. Gonnet
#t2005
#cBMC Bioinformatics
#index769007
#% 
#!
  
#*Application of a sensitive collection heuristic for very large protein families: Evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases.
#@Georg Schneider,Georg Neuberger,Michael Wildpaner,Sun Tian,Igor N. Berezovsky,Frank Eisenhaber
#t2006
#cBMC Bioinformatics
#index769008
#% 
#!
  
#*CGH-Profiler: Data mining based on genomic aberration profiles.
#@Falk Schubert,Bernhard Tausch,Stefan Joos,Roland Eils
#t2005
#cBMC Bioinformatics
#index769009
#% 
#!
  
#*HMM Logos for visualization of protein families.
#@Benjamin Schuster-Böckler,Jörg Schultz,Sven Rahmann
#t2004
#cBMC Bioinformatics
#index769010
#% 
#!
  
#*Efficient Boolean implementation of universal sequence maps (bUSM).
#@John Schwacke,Jonas S. Almeida
#t2002
#cBMC Bioinformatics
#index769011
#% 
#!
  
#*Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis.
#@Jean-Marc Schwartz,Minoru Kanehisa
#t2006
#cBMC Bioinformatics
#index769012
#% 
#!
  
#*YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities.
#@Roland Schwarz,Patrick Musch,Axel von Kamp,Bernd Engels,R. Heiner Schirmer,Stefan Schuster,Thomas Dandekar
#t2005
#cBMC Bioinformatics
#index769013
#% 
#!
  
#*d-matrix - database exploration, visualization and analysis.
#@Dominik Seelow,Raffaello Galli,Siegrun Mebus,Hans-Peter Sperling,Hans Lehrach,Silke Sperling
#t2004
#cBMC Bioinformatics
#index769014
#% 
#!
  
#*FastGroup: A program to dereplicate libraries of 16S rDNA sequences.
#@Victor Seguritan,Forest Rohwer
#t2001
#cBMC Bioinformatics
#index769015
#% 
#!
  
#*Retrieval with gene queries.
#@Aditya Kumar Sehgal,Padmini Srinivasan
#t2006
#cBMC Bioinformatics
#index769016
#% 
#!
  
#*The 3of5 web application for complex and comprehensive pattern matching in protein sequences.
#@Markus Seiler,Alexander Mehrle,Annemarie Poustka,Stefan Wiemann
#t2006
#cBMC Bioinformatics
#index769017
#% 
#!
  
#*Ensemble attribute profile clustering: discovering and characterizing groups of genes with similar patterns of biological features.
#@J. R. Semeiks,A. Rizki,Mina J. Bissell,I. Saira Mian
#t2006
#cBMC Bioinformatics
#index769018
#% 
#!
  
#*Predicting binding sites of hydrolase-inhibitor complexes by combining several methods.
#@Taner Z. Sen,Andrzej Kloczkowski,Robert L. Jernigan,Changhui Yan,Vasant Honavar,Kai-Ming Ho,Cai-Zhuang Wang,Yungok Ihm,Haibo Cao,Xun Gu,Drena Dobbs
#t2004
#cBMC Bioinformatics
#index769019
#% 
#!
  
#*Identification of clustered microRNAs using an prediction method.
#@Alain Sewer,Nicodème Paul,Pablo Landgraf,Alexei Aravin,Sébastien Pfeffer,Michael J. Brownstein,Thomas Tuschl,Erik van Nimwegen,Mihaela Zavolan
#t2005
#cBMC Bioinformatics
#index769020
#% 
#!
  
#*A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models.
#@Nikolaos G. Sgourakis,Pantelis G. Bagos,Panagiotis K. Papasaikas,Stavros J. Hamodrakas
#t2005
#cBMC Bioinformatics
#index769021
#% 
#!
  
#*Computational models with thermodynamic and composition features improve siRNA design.
#@Svetlana A. Shabalina,Alexey N. Spiridonov,Aleksey Y. Ogurtsov
#t2006
#cBMC Bioinformatics
#index769022
#% 
#!
  
#*Hubs of knowledge: using the functional link structure in Biozon to mine for biologically significant entities.
#@Paul Shafer,Timothy Isganitis,Golan Yona
#t2006
#cBMC Bioinformatics
#index769023
#% 
#!
  
#*Pegasys: software for executing and integrating analyses of biological sequences.
#@Sohrab P. Shah,David Y. M. He,Jessica N. Sawkins,Jeffrey C. Druce,Gerald Quon,Drew Lett,Grace X. Y. Zheng,Tao Xu,B. F. Francis Ouellette
#t2004
#cBMC Bioinformatics
#index769024
#% 
#!
  
#*Atlas - a data warehouse for integrative bioinformatics.
#@Sohrab P. Shah,Yong Huang,Tao Xu,Macaire M. S. Yuen,John Ling,B. F. Francis Ouellette
#t2005
#cBMC Bioinformatics
#index769025
#% 
#!
  
#*Information extraction from full text scientific articles: Where are the keywords?
#@Parantu K. Shah,Carolina Perez-Iratxeta,Peer Bork,Miguel A. Andrade
#t2003
#cBMC Bioinformatics
#index769026
#% 
#!
  
#*SNP-VISTA: An interactive SNP visualization tool.
#@Nameeta Shah,Michael V. Teplitsky,Simon Minovitsky,Len A. Pennacchio,Philip Hugenholtz,Bernd Hamann,Inna Dubchak
#t2005
#cBMC Bioinformatics
#index769027
#% 
#!
  
#*ELISA: Structure-Function Inferences based on statistically significant and evolutionarily inspired observations.
#@Boris E. Shakhnovich,John M. Harvey,Steve Comeau,David Lorenz,Charles DeLisi,Eugene I. Shakhnovich
#t2003
#cBMC Bioinformatics
#index769028
#% 
#!
  
#*- an integrative program suite for microarray data analysis.
#@Ron Shamir,Adi Maron-Katz,Amos Tanay,Chaim Linhart,Israel Steinfeld,Roded Sharan,Yosef Shiloh,Ran Elkon
#t2005
#cBMC Bioinformatics
#index769029
#% 
#!
  
#*The Gaggle: An open-source software system for integrating bioinformatics software and data sources.
#@Paul T. Shannon,David J. Reiss,Richard Bonneau,Nitin S. Baliga
#t2006
#cBMC Bioinformatics
#index769030
#% 
#!
  
#*Dynamic covariation between gene expression and proteome characteristics.
#@Mansour Taghavi Azar Sharabiani,Markku Siermala,Tommi O. Lehtinen,Mauno Vihinen
#t2005
#cBMC Bioinformatics
#index769031
#% 
#!
  
#*TmaDB: a repository for tissue microarray data.
#@Archana Sharma-Oates,Philip Quirke,David R. Westhead
#t2005
#cBMC Bioinformatics
#index769032
#% 
#!
  
#*ArrayD: A general purpose software for Microarray design.
#@Anu Sharma,Gyan Prakash Srivastava,Vineet K. Sharma,Srinivasan Ramachandran
#t2004
#cBMC Bioinformatics
#index769033
#% 
#!
  
#*Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data.
#@Kerby Shedden,Wei Chen,Rork Kuick,Debashis Ghosh,James W. MacDonald,Kathleen R. Cho,Thomas J. Giordano,Stephen B. Gruber,Eric R. Fearon,Jeremy M. G. Taylor,Samir Hanash
#t2005
#cBMC Bioinformatics
#index769034
#% 
#!
  
#*Integration of the Gene Ontology into an object-oriented architecture.
#@Daniel Shegogue,W. Jim Zheng
#t2005
#cBMC Bioinformatics
#index769035
#% 
#!
  
#*Building a protein name dictionary from full text: a machine learning term extraction approach.
#@Lei Shi,Fabien Campagne
#t2005
#cBMC Bioinformatics
#index769036
#% 
#!
  
#*SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools.
#@Arthur Chun-Chieh Shih,D. T. Lee,Laurent Lin,Chin-Lin Peng,Shiang-Heng Chen,Yu-Wei Wu,Chun-Yi Wong,Meng-Yuan Chou,Tze-Chang Shiao,Mu-Fen Hsieh
#t2006
#cBMC Bioinformatics
#index769037
#% 
#!
  
#*QPath: a method for querying pathways in a protein-protein interaction network.
#@Tomer Shlomi,Daniel Segal,Eytan Ruppin,Roded Sharan
#t2006
#cBMC Bioinformatics
#index769038
#% 
#!
  
#*An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem.
#@Alena Shmygelska,Holger H. Hoos
#t2005
#cBMC Bioinformatics
#index769039
#% 
#!
  
#*Sigma: multiple alignment of weakly-conserved non-coding DNA sequence.
#@Rahul Siddharthan
#t2006
#cBMC Bioinformatics
#index769040
#% 
#!
  
#*PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences.
#@Saurabh Sinha,Mathieu Blanchette,Martin Tompa
#t2004
#cBMC Bioinformatics
#index769041
#% 
#!
  
#*Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila.
#@Saurabh Sinha,Mark D. Schroeder,Ulrich Unnerstall,Ulrike Gaul,Eric D. Siggia
#t2004
#cBMC Bioinformatics
#index769042
#% 
#!
  
#*The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison.
#@Allan A. Sioson,Shrinivasrao P. Mane,Pinghua Li,Wei Sha,Lenwood S. Heath,Hans J. Bohnert,Ruth Grene
#t2006
#cBMC Bioinformatics
#index769043
#% 
#!
  
#*Automated generation of heuristics for biological sequence comparison.
#@Guy St. C. Slater,Ewan Birney
#t2005
#cBMC Bioinformatics
#index769044
#% 
#!
  
#*A population-based statistical approach identifies parameters characteristic of human microRNA-mRNA interactions.
#@Neil R. Smalheiser,Vetle I. Torvik
#t2004
#cBMC Bioinformatics
#index769045
#% 
#!
  
#*Cluster stability scores for microarray data in cancer studies.
#@Mark Smolkin,Debashis Ghosh
#t2003
#cBMC Bioinformatics
#index769046
#% 
#!
  
#*Detection of divergent genes in microbial aCGH experiments.
#@Lars Snipen,Dirk Repsilber,Ludvig Nyquist,Ågot Aakra,Andreas Ziegler,Are Halvor Aastveit
#t2006
#cBMC Bioinformatics
#index769047
#% 
#!
  
#*Domain-based small molecule binding site annotation.
#@Kevin A. Snyder,Howard J. Feldman,Michel Dumontier,John J. Salama,Christopher W. V. Hogue
#t2006
#cBMC Bioinformatics
#index769048
#% 
#!
  
#*Linear fuzzy gene network models obtained from microarray data by exhaustive search.
#@Bahrad A. Sokhansanj,J. Patrick Fitch,Judy N. Quong,Andrew A. Quong
#t2004
#cBMC Bioinformatics
#index769049
#% 
#!
  
#*Prediction of /isomerization in proteins using PSI-BLAST profiles and secondary structure information.
#@Jiangning Song,Kevin Burrage,Zheng Yuan,Thomas Huber
#t2006
#cBMC Bioinformatics
#index769050
#% 
#!
  
#*: A simple and robust protein sequence distance estimator.
#@Erik L. L. Sonnhammer,Volker Hollich
#t2005
#cBMC Bioinformatics
#index769051
#% 
#!
  
#*A data review and re-assessment of ovarian cancer serum proteomic profiling.
#@James M. Sorace,Min Zhan
#t2003
#cBMC Bioinformatics
#index769052
#% 
#!
  
#*Modeling the emergence of multi-protein dynamic structures by principles of self-organization through the use of 3DSpi, a multi-agent-based software.
#@Hédi Soula,Céline Robardet,François Perrin,Sébastien Gripon,Guillaume Beslon,Olivier Gandrillon
#t2005
#cBMC Bioinformatics
#index769053
#% 
#!
  
#*JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture.
#@Peter Sperisen,Marco Pagni
#t2005
#cBMC Bioinformatics
#index769054
#% 
#!
  
#*IsoSVM - Distinguishing isoforms and paralogs on the protein level.
#@Michael Spitzer,Stefan Lorkowski,Paul Cullen,Alexander Sczyrba,Georg Fuellen
#t2006
#cBMC Bioinformatics
#index769055
#% 
#!
  
#*Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases.
#@Marko Srdanovic,Ulf Schenk,Michael Schwieger,Fabien Campagne
#t2005
#cBMC Bioinformatics
#index769056
#% 
#!
  
#*GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures.
#@Daron M. Standley,Hiroyuki Toh,Haruki Nakamura
#t2005
#cBMC Bioinformatics
#index769057
#% 
#!
  
#*An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results.
#@Romesh Stanislaus,Liu Hong Jiang,Martha Swartz,John M. Arthur,Jonas S. Almeida
#t2004
#cBMC Bioinformatics
#index769058
#% 
#!
  
#*Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources.
#@Mario Stanke,Oliver Schöffmann,Burkhard Morgenstern,Stephan Waack
#t2006
#cBMC Bioinformatics
#index769059
#% 
#!
  
#*GONOME: measuring correlations between GO terms and genomic positions.
#@Stefan M. Stanley,Timothy L. Bailey,John S. Mattick
#t2006
#cBMC Bioinformatics
#index769060
#% 
#!
  
#*Versatile and declarative dynamic programming using pair algebras.
#@Peter Steffen,Robert Giegerich
#t2005
#cBMC Bioinformatics
#index769061
#% 
#!
  
#*Correction: versatile and declarative dynamic programming using pair algebras.
#@Peter Steffen,Robert Giegerich
#t2006
#cBMC Bioinformatics
#index769062
#% 
#!
  
#*Automated modelling of signal transduction networks.
#@Martin Steffen,Allegra Petti,John Aach,Patrik D'haeseleer,George M. Church
#t2002
#cBMC Bioinformatics
#index769063
#% 
#!
  
#*ProbeMaker: an extensible framework for design of sets of oligonucleotide probes.
#@Johan Stenberg,Mats Nilsson,Ulf Landegren
#t2005
#cBMC Bioinformatics
#index769064
#% 
#!
  
#*Sequence signature analysis of chromosome identity in three species.
#@Per Stenberg,Fredrik Pettersson,Anja O. Saura,Anders Berglund,Jan Larsson
#t2005
#cBMC Bioinformatics
#index769065
#% 
#!
  
#*Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser.
#@Judith E. Stenger,Hong Xu,Carol Haynes,Elizabeth R. Hauser,Margaret A. Pericak-Vance,Pascal J. Goldschmidt-Clermont,Jeffery M. Vance
#t2005
#cBMC Bioinformatics
#index769066
#% 
#!
  
#*Combining Affymetrix microarray results.
#@John R. Stevens,R. W. Doerge
#t2005
#cBMC Bioinformatics
#index769067
#% 
#!
  
#*An algorithm for mapping positively selected members of quasispecies-type viruses.
#@Jeffrey J. Stewart,Perry Watts,Samuel Litwin
#t2001
#cBMC Bioinformatics
#index769068
#% 
#!
  
#*Multiple sequence alignments of partially coding nucleic acid sequences.
#@Roman R. Stocsits,Ivo L. Hofacker,Claudia Fried,Peter F. Stadler
#t2005
#cBMC Bioinformatics
#index769069
#% 
#!
  
#*Modeling gene expression measurement error: a quasi-likelihood approach.
#@Korbinian Strimmer
#t2003
#cBMC Bioinformatics
#index769070
#% 
#!
  
#*An SVD-based comparison of nine whole eukaryotic genomes supports a coelomate rather than ecdysozoan lineage.
#@Gary W. Stuart,Michael W. Berry
#t2004
#cBMC Bioinformatics
#index769071
#% 
#!
  
#*A comparison of Pfam and MEROPS: Two databases, one comprehensive, and one specialised.
#@David J. Studholme,Neil D. Rawlings,Alan J. Barrett,Alex Bateman
#t2003
#cBMC Bioinformatics
#index769072
#% 
#!
  
#*"Harshlighting" small blemishes on microarrays.
#@Mayte Suárez-Fariñas,Asifa Haider,Knut M. Wittkowski
#t2005
#cBMC Bioinformatics
#index769073
#% 
#!
  
#*Harshlight: a "corrective make-up" program for microarray chips.
#@Mayte Suárez-Fariñas,Maurizio Pellegrino,Knut M. Wittkowski,Marcelo O. Magnasco
#t2005
#cBMC Bioinformatics
#index769074
#% 
#!
  
#*DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment.
#@Amarendran R. Subramanian,Jan Weyer-Menkhoff,Michael Kaufmann,Burkhard Morgenstern
#t2005
#cBMC Bioinformatics
#index769075
#% 
#!
  
#*Choosing the best heuristic for seeded alignment of DNA sequences.
#@Yanni Sun,Jeremy Buhler
#t2006
#cBMC Bioinformatics
#index769076
#% 
#!
  
#*IdentiCS - Identification of coding sequence and reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence.
#@Jibin Sun,An-Ping Zeng
#t2004
#cBMC Bioinformatics
#index769077
#% 
#!
  
#*Ranking the whole MEDLINE database according to a large training set using text indexing.
#@Brian P. Suomela,Miguel A. Andrade
#t2005
#cBMC Bioinformatics
#index769078
#% 
#!
  
#*Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity.
#@Fran Supek,Kristian Vlahovicek
#t2005
#cBMC Bioinformatics
#index769079
#% 
#!
  
#*Dissecting systems-wide data using mixture models: application to identify affected cellular processes.
#@J. Peter Svensson,Renée X. de Menezes,Ingela Turesson,Micheline Giphart-Gassler,Harry Vrieling
#t2005
#cBMC Bioinformatics
#index769080
#% 
#!
  
#*FRAGS: estimation of coding sequence substitution rates from fragmentary data.
#@Estienne C. Swart,Winston A. Hide,Cathal Seoighe
#t2004
#cBMC Bioinformatics
#index769081
#% 
#!
  
#*Wildfire: distributed, Grid-enabled workflow construction and execution.
#@Francis Tang,Ching Lian Chua,Liang-Yoong Ho,Yun-Ping Lim,Praveen Issac,Arun Krishnan
#t2005
#cBMC Bioinformatics
#index769082
#% 
#!
  
#*Gene selection algorithms for microarray data based on least squares support vector machine.
#@E. Ke Tang,Ponnuthurai N. Suganthan,Xin Yao
#t2006
#cBMC Bioinformatics
#index769083
#% 
#!
  
#*Identifying functional relationships among human genes by systematic analysis of biological literature.
#@Yong-Chuan Tao,Rudolph L. Leibel
#t2002
#cBMC Bioinformatics
#index769084
#% 
#!
  
#*The COG database: an updated version includes eukaryotes.
#@Roman L. Tatusov,Natalie D. Fedorova,John D. Jackson,Aviva R. Jacobs,Boris Kiryutin,Eugene V. Koonin,Dmitri M. Krylov,Raja Mazumder,Sergei L. Mekhedov,Anastasia N. Nikolskaya,B. Sridhar Rao,Sergei Smirnov,Alexander V. Sverdlov,Sona Vasudevan,Yuri I. Wolf,Jodie J. Yin,Darren A. Natale
#t2003
#cBMC Bioinformatics
#index769085
#% 
#!
  
#*Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration.
#@Erdahl T. Teber,Edward Crawford,Kent B. Bolton,Derek Van Dyk,Peter R. Schofield,Vimal Kapoor,W. Bret Church
#t2006
#cBMC Bioinformatics
#index769086
#% 
#!
  
#*An unsupervised classification scheme for improving predictions of prokaryotic TIS.
#@Maike Tech,Peter Meinicke
#t2006
#cBMC Bioinformatics
#index769087
#% 
#!
  
#*RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits.
#@Hanno Teeling,Frank Oliver Glöckner
#t2006
#cBMC Bioinformatics
#index769088
#% 
#!
  
#*TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences.
#@Hanno Teeling,Jost Waldmann,Thierry Lombardot,Margarete Bauer,Frank Oliver Glöckner
#t2004
#cBMC Bioinformatics
#index769089
#% 
#!
  
#*DCD - a novel plant specific domain in proteins involved in development and programmed cell death.
#@Raimund Tenhaken,Tobias Doerks,Peer Bork
#t2005
#cBMC Bioinformatics
#index769090
#% 
#!
  
#*Super paramagnetic clustering of protein sequences.
#@Igor V. Tetko,Axel Facius,Andreas Ruepp,Hans-Werner Mewes
#t2005
#cBMC Bioinformatics
#index769091
#% 
#!
  
#*AltTrans: Transcript pattern variants annotated for both alternative splicing and alternative polyadenylation.
#@Vincent Le Texier,Jean-Jack M. Riethoven,Vasudev Kumanduri,Chellappa Gopalakrishnan,Fabrice Lopez,Daniel Gautheret,Thangavel Alphonse Thanaraj
#t2006
#cBMC Bioinformatics
#index769092
#% 
#!
  
#*SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.
#@Joan Teyra,Andreas Doms,Michael Schroeder,M. Teresa Pisabarro
#t2006
#cBMC Bioinformatics
#index769093
#% 
#!
  
#*GECKO: a complete large-scale gene expression analysis platform.
#@Joachim Theilhaber,Anatoly Ulyanov,Anish Malanthara,Jack Cole,Dapeng Xu,Robert Nahf,Michael Heuer,Christoph Brockel,Steven Bushnell
#t2004
#cBMC Bioinformatics
#index769094
#% 
#!
  
#*Improved prediction of critical residues for protein function based on network and phylogenetic analyses.
#@Boris Thibert,Dale E. Bredesen,Gabriel del Rio
#t2005
#cBMC Bioinformatics
#index769095
#% 
#!
  
#*A new pooling strategy for high-throughput screening: the Shifted Transversal Design.
#@Nicolas Thierry-Mieg
#t2006
#cBMC Bioinformatics
#index769096
#% 
#!
  
#*Genetic algorithm learning as a robust approach to RNA editing site prediction.
#@James Thompson,Shuba Gopal
#t2006
#cBMC Bioinformatics
#index769097
#% 
#!
  
#*Dissecting trait heterogeneity: a comparison of three clustering methods applied to genotypic data.
#@Tricia A. Thornton-Wells,Jason H. Moore,Jonathan L. Haines
#t2006
#cBMC Bioinformatics
#index769098
#% 
#!
  
#*Comparing transformation methods for DNA microarray data.
#@Helene H. Thygesen,Aeilko H. Zwinderman
#t2004
#cBMC Bioinformatics
#index769099
#% 
#!
  
#*Modelling the correlation between the activities of adjacent genes in drosophila.
#@Helene H. Thygesen,Aeilko H. Zwinderman
#t2005
#cBMC Bioinformatics
#index769100
#% 
#!
  
#*Modeling Sage data with a truncated gamma-Poisson model.
#@Helene H. Thygesen,Aeilko H. Zwinderman
#t2006
#cBMC Bioinformatics
#index769101
#% 
#!
  
#*A simple method for assessing sample sizes in microarray experiments.
#@Robert Tibshirani
#t2006
#cBMC Bioinformatics
#index769102
#% 
#!
  
#*Analysis and visualization of chromosomal abnormalities in SNP data with SNPscan.
#@Jason C. Ting,Ying Ye,George H. Thomas,Ingo Ruczinski,Jonathan Pevsner
#t2006
#cBMC Bioinformatics
#index769103
#% 
#!
  
#*Computational verification of protein-protein interactions by orthologous co-expression.
#@Itay Tirosh,Naama Barkai
#t2005
#cBMC Bioinformatics
#index769104
#% 
#!
  
#*An approach for clustering gene expression data with error information.
#@Brian Tjaden
#t2006
#cBMC Bioinformatics
#index769105
#% 
#!
  
#*Quality determination and the repair of poor quality spots in array experiments.
#@Brian D. M. Tom,Walter R. Gilks,Elizabeth T. Brooke-Powell,James W. Ajioka
#t2005
#cBMC Bioinformatics
#index769106
#% 
#!
  
#*Pathway level analysis of gene expression using singular value decomposition.
#@John K. Tomfohr,Jun Lu,Thomas B. Kepler
#t2005
#cBMC Bioinformatics
#index769107
#% 
#!
  
#*Artificial neural network approach for selection of susceptible single nucleotide polymorphisms and construction of prediction model on childhood allergic asthma.
#@Yasuyuki Tomita,Shuta Tomida,Yuko Hasegawa,Yoichi Suzuki,Taro Shirakawa,Takeshi Kobayashi,Hiroyuki Honda
#t2004
#cBMC Bioinformatics
#index769108
#% 
#!
  
#*Selection of informative clusters from hierarchical cluster tree with gene classes.
#@Petri Törönen
#t2004
#cBMC Bioinformatics
#index769109
#% 
#!
  
#*DSD - An integrated, web-accessible database of Dehydrogenase Enzyme Stereospecificities.
#@Christopher P. Toseland,Helen M. McSparron,Darren R. Flower
#t2005
#cBMC Bioinformatics
#index769110
#% 
#!
  
#*Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays.
#@Jeffrey P. Townsend
#t2004
#cBMC Bioinformatics
#index769111
#% 
#!
  
#*An analysis of the Sargasso Sea resource and the consequences for database composition.
#@Michael L. Tress,Domenico Cozzetto,Anna Tramontano,Alfonso Valencia
#t2006
#cBMC Bioinformatics
#index769112
#% 
#!
  
#*Columba: an integrated database of proteins, structures, and annotations.
#@Silke Trißl,Kristian Rother,Heiko Müller,Thomas Steinke,Ina Koch,Robert Preissner,Cornelius Frömmel,Ulf Leser
#t2005
#cBMC Bioinformatics
#index769113
#% 
#!
  
#*HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data.
#@Prinal Trivedi,Jode W. Edwards,Jelai Wang,Gary L. Gadbury,Vinodh Srinivasasainagendra,Stanislav O. Zakharkin,Kyoungmi Kim,Tapan Mehta,Jacob P. L. Brand,Amit Patki,Grier P. Page,David B. Allison
#t2005
#cBMC Bioinformatics
#index769114
#% 
#!
  
#*Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model approach.
#@Kevin Truong,Mitsuhiko Ikura
#t2002
#cBMC Bioinformatics
#index769115
#% 
#!
  
#*Domain fusion analysis by applying relational algebra to protein sequence and domain databases.
#@Kevin Truong,Mitsuhiko Ikura
#t2003
#cBMC Bioinformatics
#index769116
#% 
#!
  
#*Various criteria in the evaluation of biomedical named entity recognition.
#@Richard Tzong-Han Tsai,Shih-Hung Wu,Wen-Chi Chou,Yu-Chun Lin,Ding He,Jieh Hsiang,Ting-Yi Sung,Wen-Lian Hsu
#t2006
#cBMC Bioinformatics
#index769117
#% 
#!
  
#*Characterizing disease states from topological properties of transcriptional regulatory networks.
#@David Tuck,Harriet Kluger,Yuval Kluger
#t2006
#cBMC Bioinformatics
#index769118
#% 
#!
  
#*Metabolic pathways variability and sequence/networks comparisons.
#@Kyaw Tun,Pawan K. Dhar,Maria Concetta Palumbo,Alessandro Giuliani
#t2006
#cBMC Bioinformatics
#index769119
#% 
#!
  
#*SNA - a toolbox for the stoichiometric analysis of metabolic networks.
#@Robert Urbanczik
#t2006
#cBMC Bioinformatics
#index769120
#% 
#!
  
#*Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change.
#@Andrew V. Uzilov,Joshua M. Keegan,David H. Mathews
#t2006
#cBMC Bioinformatics
#index769121
#% 
#!
  
#*cDNA2Genome: A tool for mapping and annotating cDNAs.
#@Coral del Val,Karl-Heinz Glatting,Sándor Suhai
#t2003
#cBMC Bioinformatics
#index769122
#% 
#!
  
#*Iterative class discovery and feature selection using Minimal Spanning Trees.
#@Sudhir Varma,Richard Simon
#t2004
#cBMC Bioinformatics
#index769123
#% 
#!
  
#*Bias in error estimation when using cross-validation for model selection.
#@Sudhir Varma,Richard Simon
#t2006
#cBMC Bioinformatics
#index769124
#% 
#!
  
#*Storing, linking, and mining microarray databases using SRS.
#@Antoine Veldhoven,Don de Lange,Marcel Smid,Victor de Jager,Jan A. Kors,Guido Jenster
#t2005
#cBMC Bioinformatics
#index769125
#% 
#!
  
#*Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE).
#@Ricardo Z. N. Vêncio,Helena Brentani,Diogo F. C. Patrão,Carlos A. de B. Pereira
#t2004
#cBMC Bioinformatics
#index769126
#% 
#!
  
#*BayGO: Bayesian analysis of ontology term enrichment in microarray data.
#@Ricardo Z. N. Vêncio,Tie Koide,Suely L. Gomes,Carlos A. de B. Pereira
#t2006
#cBMC Bioinformatics
#index769127
#% 
#!
  
#*The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies.
#@Roel G. W. Verhaak,Frank J. T. Staal,Peter J. M. Valk,Bob Löwenberg,Marcel J. T. Reinders,Dick de Ridder
#t2006
#cBMC Bioinformatics
#index769128
#% 
#!
  
#*GeneViTo: Visualizing gene-product functional and structural features in genomic datasets.
#@Georgios S. Vernikos,Christos G. Gkogkas,Vassilis J. Promponas,Stavros J. Hamodrakas
#t2003
#cBMC Bioinformatics
#index769129
#% 
#!
  
#*A structural study for the optimisation of functional motifs encoded in protein sequences.
#@Allegra Via,Manuela Helmer-Citterich
#t2004
#cBMC Bioinformatics
#index769130
#% 
#!
  
#*Use of physiological constraints to identify quantitative design principles for gene expression in yeast adaptation to heat shock.
#@Ester Vilaprinyó,Rui Alves,Albert Sorribas
#t2006
#cBMC Bioinformatics
#index769131
#% 
#!
  
#*Applying Support Vector Machines for Gene ontology based gene function prediction.
#@Arunachalam Vinayagam,Rainer König,Jutta Moormann,Falk Schubert,Roland Eils,Karl-Heinz Glatting,Sándor Suhai
#t2004
#cBMC Bioinformatics
#index769132
#% 
#!
  
#*GOPET: A tool for automated predictions of Gene Ontology terms.
#@Arunachalam Vinayagam,Coral del Val,Falk Schubert,Roland Eils,Karl-Heinz Glatting,Sándor Suhai,Rainer König
#t2006
#cBMC Bioinformatics
#index769133
#% 
#!
  
#*Exploiting the full power of temporal gene expression profiling through a new statistical test: Application to the analysis of muscular dystrophy data.
#@Veronica Vinciotti,Xiaohui Liu,Rolf Turk,Emile J. de Meijer,Peter A. C. 't Hoen
#t2006
#cBMC Bioinformatics
#index769134
#% 
#!
  
#*Shortest triplet clustering: reconstructing large phylogenies using representative sets.
#@Le Sy Vinh,Arndt von Haeseler
#t2005
#cBMC Bioinformatics
#index769135
#% 
#!
  
#*Approximation properties of haplotype tagging.
#@Staal A. Vinterbo,Stephan Dreiseitl,Lucila Ohno-Machado
#t2006
#cBMC Bioinformatics
#index769136
#% 
#!
  
#*InterferenceAnalyzer: Tools for the analysis and simulation of multi-locus genetic data.
#@Lalitha Viswanath,Elizabeth A. Housworth
#t2005
#cBMC Bioinformatics
#index769137
#% 
#!
  
#*Chromosomal clustering of a human transcriptome reveals regulatory background.
#@Jan H. Vogel,Anja von Heydebreck,Antje Purmann,Silke Sperling
#t2005
#cBMC Bioinformatics
#index769138
#% 
#!
  
#*A two-stage approach for improved prediction of residue contact maps.
#@Alessandro Vullo,Ian Walsh,Gianluca Pollastri
#t2006
#cBMC Bioinformatics
#index769139
#% 
#!
  
#*Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models.
#@Stephan Waack,Oliver Keller,Roman Asper,Thomas Brodag,Carsten Damm,Wolfgang Florian Fricke,Katharina Surovcik,Peter Meinicke,Rainer Merkl
#t2006
#cBMC Bioinformatics
#index769140
#% 
#!
  
#*Computational protein biomarker prediction: a case study for prostate cancer.
#@Michael Wagner,Dayanand N. Naik,Alex Pothen,Srinivas Kasukurti,Raghu Ram Devineni,Bao-Ling Adam,O. John Semmes,George L. Wright Jr.
#t2004
#cBMC Bioinformatics
#index769141
#% 
#!
  
#*Vestige: Maximum likelihood phylogenetic footprinting.
#@Matthew J. Wakefield,Peter Maxwell,Gavin A. Huttley
#t2005
#cBMC Bioinformatics
#index769142
#% 
#!
  
#*Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress.
#@Huiquan Wang,Craig J. Benham
#t2006
#cBMC Bioinformatics
#index769143
#% 
#!
  
#*Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data.
#@Junbai Wang,Trond Hellem Bø,Inge Jonassen,Ola Myklebost,Eivind Hovig
#t2003
#cBMC Bioinformatics
#index769144
#% 
#!
  
#*Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study.
#@Junbai Wang,Jan Delabie,Hans Christian Aasheim,Erlend Smeland,Ola Myklebost
#t2002
#cBMC Bioinformatics
#index769145
#% 
#!
  
#*SED, a normalization free method for DNA microarray data analysis.
#@Huajun Wang,Hui Huang
#t2004
#cBMC Bioinformatics
#index769146
#% 
#!
  
#*Generalizations of Markov model to characterize biological sequences.
#@Junwen Wang,Sridhar Hannenhalli
#t2005
#cBMC Bioinformatics
#index769147
#% 
#!
  
#*A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage.
#@Jianmin Wang,Xiaoqiu Huang
#t2005
#cBMC Bioinformatics
#index769148
#% 
#!
  
#*A robust two-way semi-linear model for normalization of cDNA microarray data.
#@Deli Wang,Jian Huang,Hehuang Xie,Liliana Manzella,Marcelo Bento Soares
#t2005
#cBMC Bioinformatics
#index769149
#% 
#!
  
#*LS-NMF: A modified non-negative matrix factorization algorithm utilizing uncertainty estimates.
#@Guoli Wang,Andrew V. Kossenkov,Michael F. Ochs
#t2006
#cBMC Bioinformatics
#index769150
#% 
#!
  
#*SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters.
#@Chunlin Wang,Elliot J. Lefkowitz
#t2004
#cBMC Bioinformatics
#index769151
#% 
#!
  
#*Genomic multiple sequence alignments: refinement using a genetic algorithm.
#@Chunlin Wang,Elliot J. Lefkowitz
#t2005
#cBMC Bioinformatics
#index769152
#% 
#!
  
#*Missing value estimation for DNA microarray gene expression data by Support Vector Regression imputation and orthogonal coding scheme.
#@Xian Wang,Ao Li,Zhaohui Jiang,Huanqing Feng
#t2006
#cBMC Bioinformatics
#index769153
#% 
#!
  
#*Identification and utilization of inter-species conserved (ISC) probesets on Affymetrix human GeneChip platforms for the optimization of the assessment of expression patterns in non human primate (NHP) samples.
#@Zhining Wang,Mark G. Lewis,Martin E. Nau,Alma Arnold,Maryanne T. Vahey
#t2004
#cBMC Bioinformatics
#index769154
#% 
#!
  
#*SNPHunter: a bioinformatic software for single nucleotide polymorphism data acquisition and management.
#@Lin Wang,Simin Liu,Tianhua Niu,Xin Xu
#t2005
#cBMC Bioinformatics
#index769155
#% 
#!
  
#*M-CGH: Analysing microarray-based CGH experiments.
#@Junbai Wang,Leonardo A. Meza-Zepeda,Stine H. Kresse,Ola Myklebost
#t2004
#cBMC Bioinformatics
#index769156
#% 
#!
  
#*Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines.
#@Jiren Wang,Wing-Kin Sung,Arun Krishnan,Kuo-Bin Li
#t2005
#cBMC Bioinformatics
#index769157
#% 
#!
  
#*Machine learning approaches to supporting the identification of photoreceptor-enriched genes based on expression data.
#@Haiying Wang,Huiru Zheng,David Simpson,Francisco Azuaje
#t2006
#cBMC Bioinformatics
#index769158
#% 
#!
  
#*The relationship between the L1 and L2 domains of the insulin and epidermal growth factor receptors and leucine-rich repeat modules.
#@Colin W. Ward,Thomas P. J. Garrett
#t2001
#cBMC Bioinformatics
#index769159
#% 
#!
  
#*Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes.
#@Patrick Warnat,Roland Eils,Benedikt Brors
#t2005
#cBMC Bioinformatics
#index769160
#% 
#!
  
#*Reannotation of the CELO genome characterizes a set of previously unassigned open reading frames and points to novel modes of host interaction in avian adenoviruses.
#@Stefan Washietl,Frank Eisenhaber
#t2003
#cBMC Bioinformatics
#index769161
#% 
#!
  
#*prot4EST: Translating Expressed Sequence Tags from neglected genomes.
#@James Wasmuth,Mark L. Blaxter
#t2004
#cBMC Bioinformatics
#index769162
#% 
#!
  
#*ProGenExpress: Visualization of quantitative data on prokaryotic genomes.
#@Michael Watson
#t2005
#cBMC Bioinformatics
#index769163
#% 
#!
  
#*PASBio: predicate-argument structures for event extraction in molecular biology.
#@Tuangthong Wattarujeekrit,Parantu K. Shah,Nigel Collier
#t2004
#cBMC Bioinformatics
#index769164
#% 
#!
  
#*A new dynamical layout algorithm for complex biochemical reaction networks.
#@Katja Wegner,Ursula Kummer
#t2005
#cBMC Bioinformatics
#index769165
#% 
#!
  
#*Computational method for reducing variance with Affymetrix microarrays.
#@Stephen Welle,Andrew I. Brooks,Charles A. Thornton
#t2002
#cBMC Bioinformatics
#index769166
#% 
#!
  
#*Extension of Lander-Waterman theory for sequencing filtered DNA libraries.
#@Michael C. Wendl,W. Bradley Barbazuk
#t2005
#cBMC Bioinformatics
#index769167
#% 
#!
  
#*Recent Hits Acquired by BLAST (ReHAB): A tool to identify new hits in sequence similarity searches.
#@Joe Whitney,David J. Esteban,Chris Upton
#t2005
#cBMC Bioinformatics
#index769168
#% 
#!
  
#*Improved variance estimation of classification performance via reduction of bias caused by small sample size.
#@Ulrika Wickenberg-Bolin,Hanna Göransson,Mårten Fryknäs,Mats G. Gustafsson,Anders Isaksson
#t2006
#cBMC Bioinformatics
#index769169
#% 
#!
  
#*Simulation of DNA array hybridization experiments and evaluation of critical parameters during subsequent image and data analysis.
#@Christoph K. Wierling,Matthias Steinfath,Thorsten Elge,Steffen Schulze-Kremer,Pia Aanstad,Matthew Clark,Hans Lehrach,Ralf Herwig
#t2002
#cBMC Bioinformatics
#index769170
#% 
#!
  
#*Inter-residue distances derived from fold contact propensities correlate with evolutionary substitution costs.
#@Gareth Williams,Patrick Doherty
#t2004
#cBMC Bioinformatics
#index769171
#% 
#!
  
#*LEAping to conclusions: A computational reanalysis of late embryogenesis abundant proteins and their possible roles.
#@Michael J. Wise
#t2003
#cBMC Bioinformatics
#index769172
#% 
#!
  
#*Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER.
#@Markus Wistrand,Erik L. L. Sonnhammer
#t2005
#cBMC Bioinformatics
#index769173
#% 
#!
  
#*Target SNP selection in complex disease association studies.
#@Matthias Wjst
#t2004
#cBMC Bioinformatics
#index769174
#% 
#!
  
#*Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks.
#@Cecily J. Wolfe,Isaac S. Kohane,Atul J. Butte
#t2005
#cBMC Bioinformatics
#index769175
#% 
#!
  
#*Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants.
#@Witold E. Wolski,Maciej Lalowski,Peter Jungblut,Knut Reinert
#t2005
#cBMC Bioinformatics
#index769176
#% 
#!
  
#*Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process.
#@Witold E. Wolski,Maciej Lalowski,Peter Martus,Ralf Herwig,Patrick Giavalisco,Johan Gobom,Albert Sickmann,Hans Lehrach,Knut Reinert
#t2005
#cBMC Bioinformatics
#index769177
#% 
#!
  
#*Identification of physicochemical selective pressure on protein encoding nucleotide sequences.
#@Wendy S. W. Wong,Raazesh Sainudiin,Rasmus Nielsen
#t2006
#cBMC Bioinformatics
#index769178
#% 
#!
  
#*Extending the mutual information measure to rank inferred literature relationships.
#@Jonathan D. Wren
#t2004
#cBMC Bioinformatics
#index769179
#% 
#!
  
#*Comparison of normalization methods for CodeLink Bioarray data.
#@Wei Wu,Nilesh Dave,George C. Tseng,Thomas Richards,Eric P. Xing,Naftali Kaminski
#t2005
#cBMC Bioinformatics
#index769180
#% 
#!
  
#*Gene annotation and network inference by phylogenetic profiling.
#@Jie Wu,Zhenjun Hu,Charles DeLisi
#t2006
#cBMC Bioinformatics
#index769181
#% 
#!
  
#*Evaluation of normalization methods for cDNA microarray data by -NN classification.
#@Wei Wu,Eric P. Xing,Connie Myers,I. Saira Mian,Mina J. Bissell
#t2005
#cBMC Bioinformatics
#index769182
#% 
#!
  
#*WebArray: an online platform for microarray data analysis.
#@Xiaoqin Xia,Michael McClelland,Yipeng Wang
#t2005
#cBMC Bioinformatics
#index769183
#% 
#!
  
#*Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine.
#@Chenghai Xue,Fei Li,Tao He,Guo-Ping Liu,Yanda Li,Xuegong Zhang
#t2005
#cBMC Bioinformatics
#index769184
#% 
#!
  
#*PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory.
#@Yu Xue,Ao Li,Lirong Wang,Huanqing Feng,Xuebiao Yao
#t2006
#cBMC Bioinformatics
#index769185
#% 
#!
  
#*Extraction of phylogenetic network modules from the metabolic network.
#@Takuji Yamada,Minoru Kanehisa,Susumu Goto
#t2006
#cBMC Bioinformatics
#index769186
#% 
#!
  
#*A stable gene selection in microarray data analysis.
#@Kun Yang,Zhipeng Cai,Jianzhong Li,Guohui Lin
#t2006
#cBMC Bioinformatics
#index769187
#% 
#!
  
#*PDA: Pooled DNA analyzer.
#@Hsin-Chou Yang,Chia-Ching Pan,Chin-Yu Lin,Cathy S. J. Fann
#t2006
#cBMC Bioinformatics
#index769188
#% 
#!
  
#*An improved procedure for gene selection from microarray experiments using false discovery rate criterion.
#@James J. Yang,Mark C. K. Yang
#t2006
#cBMC Bioinformatics
#index769189
#% 
#!
  
#*Accuracy of cDNA microarray methods to detect small gene expression changes induced by neuregulin on breast epithelial cells.
#@Bin Yao,Sanjay N. Rakhade,Qunfang Li,Sharlin Ahmed,Raul Krauss,Sorin Draghici,Jeffrey A. Loeb
#t2004
#cBMC Bioinformatics
#index769190
#% 
#!
  
#*Relationship of SARS-CoV to other pathogenic RNA viruses explored by tetranucleotide usage profiling.
#@Yee Leng Yap,Xue Wu Zhang,Antoine Danchin
#t2003
#cBMC Bioinformatics
#index769191
#% 
#!
  
#*Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast.
#@Ping Ye,Brian D. Peyser,Forrest A. Spencer,Joel S. Bader
#t2005
#cBMC Bioinformatics
#index769192
#% 
#!
  
#*WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data.
#@Ming Yi,Jay D. Horton,Jonathan C. Cohen,Helen H. Hobbs,Robert M. Stephens
#t2006
#cBMC Bioinformatics
#index769193
#% 
#!
  
#*PSE: A tool for browsing a large amount of MEDLINE/PubMed abstracts with gene names and common words as the keywords.
#@Takashi Yoneya
#t2005
#cBMC Bioinformatics
#index769194
#% 
#!
  
#*A computational approach for identifying pathogenicity islands in prokaryotic genomes.
#@Sung Ho Yoon,Cheol-Goo Hur,Ho-Young Kang,Yeoun Hee Kim,Tae Kwang Oh,Jihyun F. Kim
#t2005
#cBMC Bioinformatics
#index769195
#% 
#!
  
#*Two-stage normalization using background intensities in cDNA microarray data.
#@Dankyu Yoon,Sung-Gon Yi,Ju-Han Kim,Taesung Park
#t2004
#cBMC Bioinformatics
#index769196
#% 
#!
  
#*GapCoder automates the use of indel characters in phylogenetic analysis.
#@Nelson D. Young,John Healy
#t2003
#cBMC Bioinformatics
#index769197
#% 
#!
  
#*FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries.
#@Yanan Yu,Mya Breitbart,Pat McNairnie,Forest Rohwer
#t2006
#cBMC Bioinformatics
#index769198
#% 
#!
  
#*Classification of protein quaternary structure by functional domain composition.
#@Xiaojing Yu,Chuan Wang,Yixue Li
#t2006
#cBMC Bioinformatics
#index769199
#% 
#!
  
#*Better prediction of protein contact number using a support vector regression analysis of amino acid sequence.
#@Zheng Yuan
#t2005
#cBMC Bioinformatics
#index769200
#% 
#!
  
#*Statistical analysis of real-time PCR data.
#@Joshua S. Yuan,Ann Reed,Feng Chen,C. Neal Stewart Jr.
#t2006
#cBMC Bioinformatics
#index769201
#% 
#!
  
#*SNPs3D: Candidate gene and SNP selection for association studies.
#@Peng Yue,Eugene Melamud,John Moult
#t2006
#cBMC Bioinformatics
#index769202
#% 
#!
  
#*A microarray data-based semi-kinetic method for predicting quantitative dynamics of genetic networks.
#@Katsuyuki Yugi,Yoichi Nakayama,Shigen Kojima,Tomoya Kitayama,Masaru Tomita
#t2005
#cBMC Bioinformatics
#index769203
#% 
#!
  
#*Automatic pathway building in biological association networks.
#@Anton Yuryev,Zufar Mulyukov,Ekaterina Kotelnikova,Sergei Maslov,Sergei Egorov,Alexander Nikitin,Nikolai Daraselia,Ilya Mazo
#t2006
#cBMC Bioinformatics
#index769204
#% 
#!
  
#*The Gene Set Builder: collation, curation, and distribution of sets of genes.
#@Dimas Yusuf,Jonathan S. Lim,Wyeth W. Wasserman
#t2005
#cBMC Bioinformatics
#index769205
#% 
#!
  
#*CoreGenes: A computational tool for identifying and cataloging "core" genes in a set of small genomes.
#@Nikhat Zafar,Raja Mazumder,Donald Seto
#t2002
#cBMC Bioinformatics
#index769206
#% 
#!
  
#*Sources of variation in Affymetrix microarray experiments.
#@Stanislav O. Zakharkin,Kyoungmi Kim,Tapan Mehta,Lang Chen,Stephen Barnes,Katherine E. Scheirer,Rudolph S. Parrish,David B. Allison,Grier P. Page
#t2005
#cBMC Bioinformatics
#index769207
#% 
#!
  
#*FiatFlux - a software for metabolic flux analysis from C-glucose experiments.
#@Nicola Zamboni,Eliane Fischer,Uwe Sauer
#t2005
#cBMC Bioinformatics
#index769208
#% 
#!
  
#*Mistaken Identifiers: Gene name errors can be introduced inadvertently when using Excel in bioinformatics.
#@Barry Zeeberg,Joseph Riss,David W. Kane,Kimberly J. Bussey,Edward Uchio,W. Marston Linehan,J. Carl Barrett,John N. Weinstein
#t2004
#cBMC Bioinformatics
#index769209
#% 
#!
  
#*Comparative mapping of sequence-based and structure-based protein domains.
#@Ya Zhang,John-Marc Chandonia,Chris H. Q. Ding,Stephen R. Holbrook
#t2005
#cBMC Bioinformatics
#index769210
#% 
#!
  
#*Microbial identification by mass cataloging.
#@Zhengdong Zhang,George W. Jackson,George E. Fox,Richard C. Willson
#t2006
#cBMC Bioinformatics
#index769211
#% 
#!
  
#*Profiling alternatively spliced mRNA isoforms for prostate cancer classification.
#@Chaolin Zhang,Hai-Ri Li,Jian-Bing Fan,Jessica Wang-Rodriguez,Tracy Downs,Xiang-Dong Fu,Michael Q. Zhang
#t2006
#cBMC Bioinformatics
#index769212
#% 
#!
  
#*Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data.
#@Xuegong Zhang,Xin Lu,Qian Shi,Xiu-qin Xu,Hon-chiu E. Leung,Lyndsay N. Harris,James D. Iglehart,Alexander Miron,Jun S. Liu,Wing Hung Wong
#t2006
#cBMC Bioinformatics
#index769213
#% 
#!
  
#*GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies.
#@Bing Zhang,Denise Schmoyer,Stefan Kirov,Jay Snoddy
#t2004
#cBMC Bioinformatics
#index769214
#% 
#!
  
#*Optimal Step Length EM Algorithm (OSLEM) for the estimation of haplotype frequency and its application in lipoprotein lipase genotyping.
#@Peisen Zhang,Huitao Sheng,Alfredo Morabia,T. Conrad Gilliam
#t2003
#cBMC Bioinformatics
#index769215
#% 
#!
  
#*A double classification tree search algorithm for index SNP selection.
#@Peisen Zhang,Huitao Sheng,Ryuhei Uehara
#t2004
#cBMC Bioinformatics
#index769216
#% 
#!
  
#*A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data.
#@Zhuo Zhang,Shiwei Sun,Xiaopeng Zhu,Suhua Chang,Xiaofei Liu,Chungong Yu,Dongbo Bu,Runsheng Chen
#t2006
#cBMC Bioinformatics
#index769217
#% 
#!
  
#*Predicting co-complexed protein pairs using genomic and proteomic data integration.
#@Lan V. Zhang,Sharyl L. Wong,Oliver D. King,Frederick P. Roth
#t2004
#cBMC Bioinformatics
#index769218
#% 
#!
  
#*An adaptive method for cDNA microarray normalization.
#@Yingdong Zhao,Ming-Chung Li,Richard Simon
#t2005
#cBMC Bioinformatics
#index769219
#% 
#!
  
#*Phylogenetic detection of conserved gene clusters in microbial genomes.
#@Yu Zheng,Brian P. Anton,Richard J. Roberts,Simon Kasif
#t2005
#cBMC Bioinformatics
#index769220
#% 
#!
  
#*Identifying biological concepts from a protein-related corpus with a probabilistic topic model.
#@Bin Zheng,David C. McLean Jr,Xinghua Lu
#t2006
#cBMC Bioinformatics
#index769221
#% 
#!
  
#*OligoSpawn: a software tool for the design of overgo probes from large unigene datasets.
#@Jie Zheng,Jan T. Svensson,Kavitha Madishetty,Timothy J. Close,Tao Jiang,Stefano Lonardi
#t2006
#cBMC Bioinformatics
#index769222
#% 
#!
  
#*Match-Only Integral Distribution (MOID) Algorithm for high-density oligonucleotide array analysis.
#@Yingyao Zhou,Ruben Abagyan
#t2002
#cBMC Bioinformatics
#index769223
#% 
#!
  
#*Protein structure similarity from principle component correlation analysis.
#@Xiaobo Zhou,James Chou,Stephen T. C. Wong
#t2006
#cBMC Bioinformatics
#index769224
#% 
#!
  
#*B.E.A.R. GeneInfo: A tool for identifying gene-related biomedical publications through user modifiable queries.
#@Guohui Zhou,Xinyu Wen,Hang Liu,Michael J. Schlicht,Martin J. Hessner,Peter J. Tonellato,Milton W. Datta
#t2004
#cBMC Bioinformatics
#index769225
#% 
#!
  
#*Support vector machine for classification of meiotic recombination hotspots and coldspots in Saccharomyces cerevisiaebased on codon composition.
#@Tong Zhou,Jianhong Weng,Xiao Sun,Zuhong Lu
#t2006
#cBMC Bioinformatics
#index769226
#% 
#!
  
#*NOXclass: prediction of protein-protein interaction types.
#@Hongbo Zhu,Francisco S. Domingues,Ingolf Sommer,Thomas Lengauer
#t2006
#cBMC Bioinformatics
#index769227
#% 
#!
  
#*Asynchronous adaptive time step in quantitative cellular automata modeling.
#@Hao Zhu,Peter Y. H. Pang,Yan Sun,Pawan Dhar
#t2004
#cBMC Bioinformatics
#index769228
#% 
#!
  
#*Structural comparison of metabolic networks in selected single cell organisms.
#@Dongxiao Zhu,Zhaohui S. Qin
#t2005
#cBMC Bioinformatics
#index769229
#% 
#!
  
#*RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs.
#@Christian M. Zmasek,Sean R. Eddy
#t2002
#cBMC Bioinformatics
#index769230
#% 
#!
  
#*A knowledge discovery object model API for Java.
#@Scott D. Zuyderduyn,Steven J. M. Jones
#t2003
#cBMC Bioinformatics
#index769231
#% 
#!
  
#*Phylophenetic properties of metabolic pathway topologies as revealed by global analysis.
#@Yong Zhang,Shaojuan Li,Geir Skogerbø,Zhihua Zhang,Xiaopeng Zhu,Zefeng Zhang,Shiwei Sun,Hongchao Lu,Baochen Shi,Runsheng Chen
#t2006
#cBMC Bioinformatics
#index769232
#% 
#!
  
#*Multivariate search for differentially expressed gene combinations.
#@Yuanhui Xiao,Robert D. Frisina,Alexander Gordon,Lev Klebanov,Andrei Yakovlev
#t2004
#cBMC Bioinformatics
#index769233
#% 
#!
  
#*Gene functional similarity search tool (GFSST).
#@Peisen Zhang,Jinghui Zhang,Huitao Sheng,James J. Russo,Brian Osborne,Kenneth H. Buetow
#t2006
#cBMC Bioinformatics
#index769234
#% 
#!
  
#*High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID).
#@Barry Zeeberg,Haiying Qin,Sudarshan Narasimhan,Margot Sunshine,Hong Cao,David W. Kane,Mark Reimers,Robert M. Stephens,David Bryant,Stanley K. Burt,Eldad Elnekave,Danielle M. Hari,Thomas A. Wynn,Charlotte Cunningham-Rundles,Donn M. Stewart,David Nelson,John N. Weinstein
#t2005
#cBMC Bioinformatics
#index769235
#% 
#!
  
#*Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries.
#@Ji-Ping Z. Wang,Bruce G. Lindsay,Liying Cui,P. Kerr Wall,Josh Marion,Jiaxuan Zhang,Claude W. dePamphilis
#t2005
#cBMC Bioinformatics
#index769236
#% 
#!
  
#*Mining and state-space modeling and verification of sub-networks from large-scale biomolecular networks.
#@Xiaohua Hu,Fang-Xiang Wu
#t2007
#cBMC Bioinformatics
#index1220065
#% 
#!
  
#*Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks.
#@Chang Sik Kim
#t2007
#cBMC Bioinformatics
#index1220066
#% 
#!
  
#*Inferring activity changes of transcription factors by binding association with sorted expression profiles.
#@Chao Cheng,Xiting Yan,Fengzhu Sun,Lei M. Li
#t2007
#cBMC Bioinformatics
#index1220067
#% 
#!
  
#*GraphDNA: a Java program for graphical display of DNA composition analyses.
#@Jamie M. Thomas,Daniel Horspool,Gordon Brown,Vasily Tcherepanov,Chris Upton
#t2007
#cBMC Bioinformatics
#index1220068
#% 
#!
  
#*FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data.
#@Limin Fu,Enzo Medico
#t2007
#cBMC Bioinformatics
#index1220069
#% 
#!
  
#*A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data.
#@Hua Xu,Michael A. Freitas
#t2007
#cBMC Bioinformatics
#index1220070
#% 
#!
  
#*Re-sampling strategy to improve the estimation of number of null hypotheses in FDR control under strong correlation structures.
#@Xin Lu,David L. Perkins
#t2007
#cBMC Bioinformatics
#index1220071
#% 
#!
  
#*Additive risk survival model with microarray data.
#@Shuangge Ma,Jian Huang
#t2007
#cBMC Bioinformatics
#index1220072
#% 
#!
  
#*Identifying allosteric fluctuation transitions between different protein conformational states as applied to Cyclin Dependent Kinase 2.
#@Jenny Gu,Philip E. Bourne
#t2007
#cBMC Bioinformatics
#index1220073
#% 
#!
  
#*Prediction of potential drug targets based on simple sequence properties.
#@Qingliang Li,Luhua Lai
#t2007
#cBMC Bioinformatics
#index1220074
#% 
#!
  
#*Identification of deleterious non-synonymous single nucleotide polymorphisms using sequence-derived information.
#@Jing Hu,Changhui Yan
#t2008
#cBMC Bioinformatics
#index1220075
#% 
#!
  
#*Automating dChip: toward reproducible sharing of microarray data analysis.
#@Cheng Li
#t2008
#cBMC Bioinformatics
#index1220076
#% 
#!
  
#*Baseline Correction for NMR Spectroscopic Metabolomics Data Analysis.
#@Yuanxin Xi,David M. Rocke
#t2008
#cBMC Bioinformatics
#index1220077
#% 
#!
  
#*Generating samples for association studies based on HapMap data.
#@Jing Li,Yixuan Chen
#t2008
#cBMC Bioinformatics
#index1220078
#% 
#!
  
#*Systematic identification of yeast cell cycle transcription factors using multiple data sources.
#@Wei-Sheng Wu,Wen-Hsiung Li
#t2008
#cBMC Bioinformatics
#index1220079
#% 
#!
  
#*PageRank without hyperlinks: Reranking with PubMed related article networks for biomedical text retrieval.
#@Jimmy J. Lin
#t2008
#cBMC Bioinformatics
#index1220080
#% 
#!
  
#*Supervised inference of gene-regulatory networks.
#@Cuong To,Jiri Vohradsky
#t2008
#cBMC Bioinformatics
#index1220081
#% 
#!
  
#*rMotifGen: random motif generator for DNA and protein sequences.
#@Eric C. Rouchka,C. Timothy Hardin
#t2007
#cBMC Bioinformatics
#index1220082
#% 
#!
  
#*CLUSS: Clustering of protein sequences based on a new similarity measure.
#@Abdellali Kelil,Shengrui Wang,Ryszard Brzezinski,Alain Fleury
#t2007
#cBMC Bioinformatics
#index1220083
#% 
#!
  
#*Predicting mostly disordered proteins by using structure-unknown protein data.
#@Kana Shimizu,Yoichi Muraoka,Shuichi Hirose,Kentaro Tomii,Tamotsu Noguchi
#t2007
#cBMC Bioinformatics
#index1220084
#% 
#!
  
#*Absolute estimation of initial concentrations of amplicon in a real-time RT-PCR process.
#@Marjo V. Smith,Chris R. Miller,Michael Kohn,Nigel J. Walker,Chris J. Portier
#t2007
#cBMC Bioinformatics
#index1220085
#% 
#!
  
#*SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML).
#@Nicolas Rodriguez,Marco Donizelli,Nicolas Le Novère
#t2007
#cBMC Bioinformatics
#index1220086
#% 
#!
  
#*Protein structure search and local structure characterization.
#@Shih-Yen Ku,Yuh-Jyh Hu
#t2008
#cBMC Bioinformatics
#index1220087
#% 
#!
  
#*Convergent algorithms for protein structural alignment.
#@Leandro Martínez,Roberto Andreani,José Mario Martínez
#t2007
#cBMC Bioinformatics
#index1220088
#% 
#!
  
#*Genomorama: genome visualization and analysis.
#@Jason D. Gans,Murray Wolinsky
#t2007
#cBMC Bioinformatics
#index1220089
#% 
#!
  
#*TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences.
#@Manjunatha R. Karpenahalli,Andrei N. Lupas,Johannes Söding
#t2007
#cBMC Bioinformatics
#index1220090
#% 
#!
  
#*RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules.
#@Yair Horesh,Tirza Doniger,Shulamit Michaeli,Ron Unger
#t2007
#cBMC Bioinformatics
#index1220091
#% 
#!
  
#*A Latent Variable Approach for Meta-Analysis of Gene Expression Data from Multiple Microarray Experiments.
#@Hyungwon Choi,Ronglai Shen,Arul M. Chinnaiyan,Debashis Ghosh
#t2007
#cBMC Bioinformatics
#index1220092
#% 
#!
  
#*Kernel-imbedded Gaussian processes for disease classification using microarray gene expression data.
#@Xin Zhao,Leo Wang-Kit Cheung
#t2007
#cBMC Bioinformatics
#index1220093
#% 
#!
  
#*Classification of premalignant pancreatic cancer mass-spectrometry data using decision tree ensembles.
#@Guangtao Ge,G. William Wong
#t2008
#cBMC Bioinformatics
#index1220094
#% 
#!
  
#*Constructing a meaningful evolutionary average at the phylogenetic center of mass.
#@Eric A. Stone,Arend Sidow
#t2007
#cBMC Bioinformatics
#index1220095
#% 
#!
  
#*FUNC: a package for detecting significant associations between gene sets and ontological annotations.
#@Kay Prüfer,Bjoern Muetzel,Hong Hai Do,Gunter Weiss,Philipp Khaitovich,Erhard Rahm,Svante Pääbo,Michael Lachmann,Wolfgang Enard
#t2007
#cBMC Bioinformatics
#index1220096
#% 
#!
  
#*Genetic weighted k-means algorithm for clustering large-scale gene expression data.
#@Fang-Xiang Wu
#t2008
#cBMC Bioinformatics
#index1220097
#% 
#!
  
#*Comparative evaluation of gene-set analysis methods.
#@Qi Liu,Irina Dinu,Adeniyi J. Adewale,John D. Potter,Yutaka Yasui
#t2007
#cBMC Bioinformatics
#index1220098
#% 
#!
  
#*A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microarray experiments.
#@Peter Larsen,Eyad Almasri,Guanrao Chen,Yang Dai
#t2007
#cBMC Bioinformatics
#index1220099
#% 
#!
  
#*Novel definition files for human GeneChips based on GeneAnnot.
#@Francesco Ferrari,Stefania Bortoluzzi,Alessandro Coppe,Alexandra Sirota,Marilyn Safran,Michael Shmoish,Sergio Ferrari,Doron Lancet,Gian Antonio Danieli,Silvio Bicciato
#t2007
#cBMC Bioinformatics
#index1220100
#% 
#!
  
#*Comparing sequences without using alignments: application to HIV/SIV subtyping.
#@Gilles Didier,Laurent Debomy,Maude Pupin,Ming Zhang,Alexander Grossmann,Claudine Devauchelle,Ivan Laprevotte
#t2007
#cBMC Bioinformatics
#index1220101
#% 
#!
  
#*Seahawk: moving beyond HTML in Web-based bioinformatics analysis.
#@Paul M. K. Gordon,Christoph W. Sensen
#t2007
#cBMC Bioinformatics
#index1220102
#% 
#!
  
#*Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms.
#@Amit U. Sinha,Jaroslaw Meller
#t2007
#cBMC Bioinformatics
#index1220103
#% 
#!
  
#*Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines.
#@Huynh-Hoa Bui,John Sidney,Wei Li,Nicholas Fusseder,Alessandro Sette
#t2007
#cBMC Bioinformatics
#index1220104
#% 
#!
  
#*A domain-based approach to predict protein-protein interactions.
#@Mudita Singhal,Haluk Resat
#t2007
#cBMC Bioinformatics
#index1220105
#% 
#!
  
#*Automatic generation of 3D motifs for classification of protein binding sites.
#@Jean-Christophe Nebel,Pawel Herzyk,David R. Gilbert
#t2007
#cBMC Bioinformatics
#index1220106
#% 
#!
  
#*A feature selection approach for identification of signature genes from SAGE data.
#@Junior Barrera,Roberto M. Cesar Jr.,Carlos Humes Jr.,David Correa Martins Jr.,Diogo F. C. Patrão,Paulo J. S. Silva,Helena Brentani
#t2007
#cBMC Bioinformatics
#index1220107
#% 
#!
  
#*GEVALT: An integrated software tool for genotype analysis.
#@Ofir Davidovich,Gad Kimmel,Ron Shamir
#t2007
#cBMC Bioinformatics
#index1220108
#% 
#!
  
#*A network perspective on the topological importance of enzymes and their phylogenetic conservation.
#@Wei-chung Liu,Wen-hsien Lin,Andrew J. Davis,Ferenc Jordán,Hsih-te Yang,Ming-jing Hwang
#t2007
#cBMC Bioinformatics
#index1220109
#% 
#!
  
#*PathFinder: mining signal transduction pathway segments from protein-protein interaction networks.
#@Gürkan Bebek,Jiong Yang
#t2007
#cBMC Bioinformatics
#index1220110
#% 
#!
  
#*PARE: A tool for comparing protein abundance and mRNA expression data.
#@Eric Z. Yu,Anne E. Counterman Burba,Mark Gerstein
#t2007
#cBMC Bioinformatics
#index1220111
#% 
#!
  
#*Benchmarking consensus model quality assessment for protein fold recognition.
#@Liam J. McGuffin
#t2007
#cBMC Bioinformatics
#index1220112
#% 
#!
  
#*ASMPKS: an analysis system for modular polyketide synthases.
#@Hongseok Tae,Eun-Bae Kong,Kiejung Park
#t2007
#cBMC Bioinformatics
#index1220113
#% 
#!
  
#*Background frequencies for residue variability estimates: BLOSUM revisited.
#@I. Mihalek,I. Res,Olivier Lichtarge
#t2007
#cBMC Bioinformatics
#index1220114
#% 
#!
  
#*Computational analysis of the relationship between allergenicity and digestibility of allergenic proteins in simulated gastric fluid.
#@Bingjun Jiang,Hong Qu,Yuanlei Hu,Ting Ni,Zhongping Lin
#t2007
#cBMC Bioinformatics
#index1220115
#% 
#!
  
#*Characterization of protein-interaction networks in tumors.
#@Alexander Platzer,Paul Perco,Arno Lukas,Bernd Mayer
#t2007
#cBMC Bioinformatics
#index1220116
#% 
#!
  
#*NeuroTerrain - a client-server system for browsing 3D biomedical image data sets.
#@Carl Gustafson,William J. Bug,Jonathan Nissanov
#t2007
#cBMC Bioinformatics
#index1220117
#% 
#!
  
#*Benchmarking natural-language parsers for biological applications using dependency graphs.
#@Andrew B. Clegg,Adrian J. Shepherd
#t2007
#cBMC Bioinformatics
#index1220118
#% 
#!
  
#*msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation.
#@Michael J. Hickerson,Eli Stahl,Naoki Takebayashi
#t2007
#cBMC Bioinformatics
#index1220119
#% 
#!
  
#*The EIPeptiDi tool: enhancing peptide discovery in ICAT-based LC MS/MS experiments.
#@Mario Cannataro,Giovanni Cuda,Marco Gaspari,Sergio Greco,Giuseppe Tradigo,Pierangelo Veltri
#t2007
#cBMC Bioinformatics
#index1220120
#% 
#!
  
#*How accurate and statistically robust are catalytic site predictions based on closeness centrality?
#@Eric Chea,Dennis R. Livesay
#t2007
#cBMC Bioinformatics
#index1220121
#% 
#!
  
#*Detecting microsatellites within genomes: significant variation among algorithms.
#@Sébastien Leclercq,Eric Rivals,Philippe Jarne
#t2007
#cBMC Bioinformatics
#index1220122
#% 
#!
  
#*Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies.
#@Robert Hoehndorf,Frank Loebe,Janet Kelso,Heinrich Herre
#t2007
#cBMC Bioinformatics
#index1220123
#% 
#!
  
#*Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context.
#@Jeremiah J. Faith,Andrew J. Olson,Timothy S. Gardner,Ravi Sachidanandam
#t2007
#cBMC Bioinformatics
#index1220124
#% 
#!
  
#*EDISA: extracting biclusters from multiple time-series of gene expression profiles.
#@Jochen Supper,Martin Strauch,Dierk Wanke,Klaus Harter,Andreas Zell
#t2007
#cBMC Bioinformatics
#index1220125
#% 
#!
  
#*Fast automated cell phenotype image classification.
#@Nicholas A. Hamilton,Radosav S. Pantelic,Kelly Hanson,Rohan D. Teasdale
#t2007
#cBMC Bioinformatics
#index1220126
#% 
#!
  
#*Predicting active site residue annotations in the Pfam database.
#@Jaina Mistry,Alex Bateman,Robert D. Finn
#t2007
#cBMC Bioinformatics
#index1220127
#% 
#!
  
#*Classification of heterogeneous microarray data by maximum entropy kernel.
#@Wataru Fujibuchi,Tsuyoshi Kato
#t2007
#cBMC Bioinformatics
#index1220128
#% 
#!
  
#*Influence of degree correlations on network structure and stability in protein-protein interaction networks.
#@Caroline C. Friedel,Ralf Zimmer
#t2007
#cBMC Bioinformatics
#index1220129
#% 
#!
  
#*Importance of data structure in comparing two dimension reduction methods for classification of microarray gene expression data.
#@Caroline Truntzer,Catherine Mercier,Jacques Estève,Christian Gautier,Pascal Roy
#t2007
#cBMC Bioinformatics
#index1220130
#% 
#!
  
#*Colony size measurement of the yeast gene deletion strains for functional genomics.
#@Negar Memarian,Matthew Jessulat,Javad Alirezaie,Nadereh Mir-Rashed,Jianhua Xu,Mehri Zareie,Myron Smith,Ashkan Golshani
#t2007
#cBMC Bioinformatics
#index1220131
#% 
#!
  
#*Detecting multivariate differentially expressed genes.
#@Roland Nilsson,José M. Peña,Johan Björkegren,Jesper Tegnér
#t2007
#cBMC Bioinformatics
#index1220132
#% 
#!
  
#*Joint mapping of genes and conditions via multidimensional unfolding analysis.
#@Katrijn Van Deun,Kathleen Marchal,Willem J. Heiser,Kristof Engelen,Iven Van Mechelen
#t2007
#cBMC Bioinformatics
#index1220133
#% 
#!
  
#*Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases.
#@Karolina L. Tkaczuk,Stanislaw Dunin-Horkawicz,Elzbieta Purta,Janusz M. Bujnicki
#t2007
#cBMC Bioinformatics
#index1220134
#% 
#!
  
#*A topological algorithm for identification of structural domains of proteins.
#@Frank Emmert-Streib,Arcady R. Mushegian
#t2007
#cBMC Bioinformatics
#index1220135
#% 
#!
  
#*Considerations in the identification of functional RNA structural elements in genomic alignments.
#@Tomas Babak,Benjamin J. Blencowe,Timothy R. Hughes
#t2007
#cBMC Bioinformatics
#index1220136
#% 
#!
  
#*A unified framework for finding differentially expressed genes from microarray experiments.
#@Jahangheer S. Shaik,Mohammed Yeasin
#t2007
#cBMC Bioinformatics
#index1220137
#% 
#!
  
#*antiCODE: a natural sense-antisense transcripts database.
#@Yifei Yin,Yi Zhao,Jie Wang,Changning Liu,Shuguang Chen,Runsheng Chen,Haitao Zhao
#t2007
#cBMC Bioinformatics
#index1220138
#% 
#!
  
#*From genes to functional classes in the study of biological systems.
#@Fátima Al-Shahrour,Leonardo Arbiza,Hernán Dopazo,Jaime Huerta-Cepas,Pablo Minguez,David Montaner,Joaquín Dopazo
#t2007
#cBMC Bioinformatics
#index1220139
#% 
#!
  
#*Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins.
#@Qiwen Dong,Xiaolong Wang,Lei Lin,Yi Guan
#t2007
#cBMC Bioinformatics
#index1220140
#% 
#!
  
#*Evaluation of gene-expression clustering via mutual information distance measure.
#@Ido Priness,Oded Maimon,Irad E. Ben-Gal
#t2007
#cBMC Bioinformatics
#index1220141
#% 
#!
  
#*A procedure for identifying homologous alternative splicing events.
#@David Talavera,Adam Hospital,Modesto Orozco,Xavier de la Cruz
#t2007
#cBMC Bioinformatics
#index1220142
#% 
#!
  
#*Measuring similarities between gene expression profiles through new data transformations.
#@Kyungpil Kim,Shibo Zhang,Keni Jiang,Li Cai,In-Beum Lee,Lewis J. Feldman,Haiyan Huang
#t2007
#cBMC Bioinformatics
#index1220143
#% 
#!
  
#*A robust measure of correlation between two genes on a microarray.
#@Johanna S. Hardin,Aya Mitani,Leanne Hicks,Brian VanKoten
#t2007
#cBMC Bioinformatics
#index1220144
#% 
#!
  
#*A procedure for the estimation over time of metabolic fluxes in scenarios where measurements are uncertain and/or insufficient.
#@Francisco Llaneras,Jesús Picó
#t2007
#cBMC Bioinformatics
#index1220145
#% 
#!
  
#*miRAS: a data processing system for miRNA expression profiling study.
#@Feng Tian,Huayue Zhang,Xinyu Zhang,Chi Song,Yongjing Xia,Yiqing Wu,Xiangjun Liu
#t2007
#cBMC Bioinformatics
#index1220146
#% 
#!
  
#*HMM-ModE - Improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences.
#@Prashant K. Srivastava,Dhwani K. Desai,Soumyadeep Nandi,Andrew M. Lynn
#t2007
#cBMC Bioinformatics
#index1220147
#% 
#!
  
#*FlexOracle: predicting flexible hinges by identification of stable domains.
#@Samuel Flores,Mark Gerstein
#t2007
#cBMC Bioinformatics
#index1220148
#% 
#!
  
#*TABASCO: A single molecule, base-pair resolved gene expression simulator.
#@Sriram Kosuri,Jason R. Kelly,Drew Endy
#t2007
#cBMC Bioinformatics
#index1220149
#% 
#!
  
#*A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression data.
#@Reuben Thomas,Carlos J. Paredes,Sanjay Mehrotra,Vassily Hatzimanikatis,Eleftherios T. Papoutsakis
#t2007
#cBMC Bioinformatics
#index1220150
#% 
#!
  
#*Reduced modeling of signal transduction - a modular approach.
#@Markus Koschorreck,Holger Conzelmann,Sybille Ebert,Michael Ederer,Ernst Dieter Gilles
#t2007
#cBMC Bioinformatics
#index1220151
#% 
#!
  
#*PASSIM - an open source software system for managing information in biomedical studies.
#@Juris Viksna,Edgars Celms,Martins Opmanis,Karlis Podnieks,Peteris Rucevskis,Andris Zarins,Amy Barrett,Sudeshna Guha Neogi,Maria Krestyaninova,Mark I. McCarthy,Alvis Brazma,Ugis Sarkans
#t2007
#cBMC Bioinformatics
#index1220152
#% 
#!
  
#*In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation.
#@Tineke Casneuf,Yves Van de Peer,Wolfgang Huber
#t2007
#cBMC Bioinformatics
#index1220153
#% 
#!
  
#*HoxPred: automated classification of Hox proteins using combinations of generalised profiles.
#@Morgane Thomas-Chollier,Luc Leyns,Valérie Ledent
#t2007
#cBMC Bioinformatics
#index1220154
#% 
#!
  
#*A new advance in alternative splicing databases: from catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants.
#@Pierre de la Grange,Martin Dutertre,Margot Correa,Didier Auboeuf
#t2007
#cBMC Bioinformatics
#index1220155
#% 
#!
  
#*Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation.
#@Marija Cvijovic,Daniel Dalevi,Elizabeth Bilsland,Graham J. L. Kemp,Per Sunnerhagen
#t2007
#cBMC Bioinformatics
#index1220156
#% 
#!
  
#*SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis.
#@Ari B. Kahn,Michael C. Ryan,Hongfang Liu,Barry Zeeberg,D. Curtis Jamison,John N. Weinstein
#t2007
#cBMC Bioinformatics
#index1220157
#% 
#!
  
#*Publishing perishing? Towards tomorrow's information architecture.
#@Michael R. Seringhaus,Mark B. Gerstein
#t2007
#cBMC Bioinformatics
#index1220158
#% 
#!
  
#*GEDI: a user-friendly toolbox for analysis of large-scale gene expression data.
#@André Fujita,João Ricardo Sato,Carlos Eduardo Ferreira,Mari Cleide Sogayar
#t2007
#cBMC Bioinformatics
#index1220159
#% 
#!
  
#*Normalization method for metabolomics data using optimal selection of multiple internal standards.
#@Marko Sysi-Aho,Mikko Katajamaa,Laxman Yetukuri,Matej Oresic
#t2007
#cBMC Bioinformatics
#index1220160
#% 
#!
  
#*MaxAlign: maximizing usable data in an alignment.
#@Rodrigo Gouveia-Oliveira,Peter Wad Sackett,Anders Gorm Pedersen
#t2007
#cBMC Bioinformatics
#index1220161
#% 
#!
  
#*Automating document classification for the Immune Epitope Database.
#@Peng Wang,Alexander A. Morgan,Qing Zhang,Alessandro Sette,Björn Peters
#t2007
#cBMC Bioinformatics
#index1220162
#% 
#!
  
#*BPhyOG: An interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes.
#@Yingqin Luo,Cong Fu,Da-Yong Zhang,Kui Lin
#t2007
#cBMC Bioinformatics
#index1220163
#% 
#!
  
#*Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases.
#@Seth I. Berger,Jeremy M. Posner,Avi Ma'ayan
#t2007
#cBMC Bioinformatics
#index1220164
#% 
#!
  
#*Including probe-level uncertainty in model-based gene expression clustering.
#@Xuejun Liu,Kevin K. Lin,Bogi Andersen,Magnus Rattray
#t2007
#cBMC Bioinformatics
#index1220165
#% 
#!
  
#*PARPs database: A LIMS systems for protein-protein interaction data mining or laboratory information management system.
#@Arnaud Droit,Joanna M. Hunter,Michèle Rouleau,Chantal Ethier,Aude Picard-Cloutier,David Bourgais,Guy G. Poirier
#t2007
#cBMC Bioinformatics
#index1220166
#% 
#!
  
#*Primique: automatic design of specific PCR primers for each sequence in a family.
#@Jakob Fredslund,Mette Lange
#t2007
#cBMC Bioinformatics
#index1220167
#% 
#!
  
#*Novel and simple transformation algorithm for combining microarray data sets.
#@Ki-Yeol Kim,Dong Hyuk Ki,Ha Jin Jeong,Hei-Cheul Jeung,Hyun Cheol Chung,Sun Young Rha
#t2007
#cBMC Bioinformatics
#index1220168
#% 
#!
  
#*Predicting zinc binding at the proteome level.
#@Andrea Passerini,Claudia Andreini,Sauro Menchetti,Antonio Rosato,Paolo Frasconi
#t2007
#cBMC Bioinformatics
#index1220169
#% 
#!
  
#*Analysis of feedback loops and robustness in network evolution based on Boolean models.
#@Yung-Keun Kwon,Kwang-Hyun Cho
#t2007
#cBMC Bioinformatics
#index1220170
#% 
#!
  
#*Statistical analysis and significance testing of serial analysis of gene expression data using a Poisson mixture model.
#@Scott D. Zuyderduyn
#t2007
#cBMC Bioinformatics
#index1220171
#% 
#!
  
#*DNA-based watermarks using the DNA-Crypt algorithm.
#@Dominik Heider,Angelika Barnekow
#t2007
#cBMC Bioinformatics
#index1220172
#% 
#!
  
#*Efficient classification of complete parameter regions based on semidefinite programming.
#@Lars Kuepfer,Uwe Sauer,Pablo A. Parrilo
#t2007
#cBMC Bioinformatics
#index1220173
#% 
#!
  
#*Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data.
#@Xiangdong Liu,Walter J. Jessen,Siva Sivaganesan,Bruce J. Aronow,Mario Medvedovic
#t2007
#cBMC Bioinformatics
#index1220174
#% 
#!
  
#*A machine learning approach for the identification of odorant binding proteins from sequence-derived properties.
#@Ganesan Pugalenthi,E. Ke Tang,Ponnuthurai N. Suganthan,Govindaraju Archunan,Ramanathan Sowdhamini
#t2007
#cBMC Bioinformatics
#index1220175
#% 
#!
  
#*Improved precision and accuracy for microarrays using updated probe set definitions.
#@Rickard Sandberg,Ola Larsson
#t2007
#cBMC Bioinformatics
#index1220176
#% 
#!
  
#*Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices.
#@Roger A. Craig,Li Liao
#t2007
#cBMC Bioinformatics
#index1220177
#% 
#!
  
#*Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement.
#@Francisco R. Pinto,João A. Carriço,Mário Ramirez,Jonas S. Almeida
#t2007
#cBMC Bioinformatics
#index1220178
#% 
#!
  
#*Semantic integration to identify overlapping functional modules in protein interaction networks.
#@Young-Rae Cho,Woochang Hwang,Murali Ramanathan,Aidong Zhang
#t2007
#cBMC Bioinformatics
#index1220179
#% 
#!
  
#*Probabilistic prediction and ranking of human protein-protein interactions.
#@Michelle S. Scott,Geoffrey J. Barton
#t2007
#cBMC Bioinformatics
#index1220180
#% 
#!
  
#*Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.
#@Jeff W. Chou,Tong Zhou,William K. Kaufmann,Richard S. Paules,Pierre R. Bushel
#t2007
#cBMC Bioinformatics
#index1220181
#% 
#!
  
#*Analysis on multi-domain cooperation for predicting protein-protein interactions.
#@Rui-Sheng Wang,Yong Wang,Ling-Yun Wu,Xiang-Sun Zhang,Luonan Chen
#t2007
#cBMC Bioinformatics
#index1220182
#% 
#!
  
#*HoughFeature, a novel method for assessing drug effects in three-color cDNA microarray experiments.
#@Hongya Zhao,Hong Yan
#t2007
#cBMC Bioinformatics
#index1220183
#% 
#!
  
#*A cross-species alignment tool ().
#@Heng Li,Liang Guan,Tao Liu,Yiran Guo,Wei-Mou Zheng,Gane Ka-Shu Wong,Jun Wang
#t2007
#cBMC Bioinformatics
#index1220184
#% 
#!
  
#*Modular co-evolution of metabolic networks.
#@Jing Zhao,Guohui Ding,Lin Tao,Hong Yu,Zhong-Hao Yu,Jianhua Luo,Zhi-Wei Cao,Yi-Xue Li
#t2007
#cBMC Bioinformatics
#index1220185
#% 
#!
  
#*Composition Profiler: a tool for discovery and visualization of amino acid composition differences.
#@Vladimir Vacic,Vladimir N. Uversky,A. Keith Dunker,Stefano Lonardi
#t2007
#cBMC Bioinformatics
#index1220186
#% 
#!
  
#*CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks.
#@Jan Baumbach
#t2007
#cBMC Bioinformatics
#index1220187
#% 
#!
  
#*Protein subcellular localization prediction based on compartment-specific features and structure conservation.
#@Emily Chia-Yu Su,Hua-Sheng Chiu,Allan Lo,Jenn-Kang Hwang,Ting-Yi Sung,Wen-Lian Hsu
#t2007
#cBMC Bioinformatics
#index1220188
#% 
#!
  
#*GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest.
#@Ramón Díaz-Uriarte
#t2007
#cBMC Bioinformatics
#index1220189
#% 
#!
  
#*SAT, a flexible and optimized Web application for SSR marker development.
#@Alexis Dereeper,Xavier Argout,Claire Billot,Jean-François Rami,Manuel Ruiz
#t2007
#cBMC Bioinformatics
#index1220190
#% 
#!
  
#*A framework for significance analysis of gene expression data using dimension reduction methods.
#@Lars Halvor Gidskehaug,Endre Anderssen,Arnar Flatberg,Bjørn K. Alsberg
#t2007
#cBMC Bioinformatics
#index1220191
#% 
#!
  
#*PedGenie: meta genetic association testing in mixed family and case-control designs.
#@Karen Curtin,Jathine Wong,Kristina Allen-Brady,Nicola J. Camp
#t2007
#cBMC Bioinformatics
#index1220192
#% 
#!
  
#*MetaLook: a 3D visualisation software for marine ecological genomics.
#@Thierry Lombardot,Renzo Kottmann,Gregory Giuliani,Andrea de Bono,Nans Addor,Frank Oliver Glöckner
#t2007
#cBMC Bioinformatics
#index1220193
#% 
#!
  
#*Bayesian refinement of protein functional site matching.
#@Kanti V. Mardia,Vysaul B. Nyirongo,Peter J. Green,Nicola D. Gold,David R. Westhead
#t2007
#cBMC Bioinformatics
#index1220194
#% 
#!
  
#*Unexpected observations after mapping LongSAGE tags to the human genome.
#@Céline Keime,Marie Sémon,Dominique Mouchiroud,Laurent Duret,Olivier Gandrillon
#t2007
#cBMC Bioinformatics
#index1220195
#% 
#!
  
#*Strainer: software for analysis of population variation in community genomic datasets.
#@John M. Eppley,Gene W. Tyson,Wayne M. Getz,Jillian F. Banfield
#t2007
#cBMC Bioinformatics
#index1220196
#% 
#!
  
#*A computational survey of candidate exonic splicing enhancer motifs in the model plant .
#@Mihaela Pertea,Stephen M. Mount,Steven L. Salzberg
#t2007
#cBMC Bioinformatics
#index1220197
#% 
#!
  
#*Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
#@Amelia B. Bellamy-Royds,Marcel Turcotte
#t2007
#cBMC Bioinformatics
#index1220198
#% 
#!
  
#*Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes.
#@Yuko Makita,Michiel J. L. de Hoon,Antoine Danchin
#t2007
#cBMC Bioinformatics
#index1220199
#% 
#!
  
#*GenMAPP 2: new features and resources for pathway analysis.
#@Nathan Salomonis,Kristina Hanspers,Alexander C. Zambon,Karen Vranizan,Steven C. Lawlor,Kam D. Dahlquist,Scott Doniger,Joshua M. Stuart,Bruce R. Conklin,Alexander R. Pico
#t2007
#cBMC Bioinformatics
#index1220200
#% 
#!
  
#*Spatial location and its relevance for terminological inferences in bio-ontologies.
#@Stefan Schulz,Kornél G. Markó,Udo Hahn
#t2007
#cBMC Bioinformatics
#index1220201
#% 
#!
  
#*Generating confidence intervals on biological networks.
#@Thomas Thorne,Michael P. H. Stumpf
#t2007
#cBMC Bioinformatics
#index1220202
#% 
#!
  
#*A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality.
#@G. Traver Hart,Insuk Lee,Edward M. Marcotte
#t2007
#cBMC Bioinformatics
#index1220203
#% 
#!
  
#*Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption with 3D visualization.
#@Namshin Kim,Christopher Lee
#t2007
#cBMC Bioinformatics
#index1220204
#% 
#!
  
#*: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences.
#@Arthur Chun-Chieh Shih,D. T. Lee,Chin-Lin Peng,Yu-Wei Wu
#t2007
#cBMC Bioinformatics
#index1220205
#% 
#!
  
#*Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining.
#@Xochitl C. Morgan,Shulin Ni,Daniel P. Miranker,Vishwanath R. Iyer
#t2007
#cBMC Bioinformatics
#index1220206
#% 
#!
  
#*TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets.
#@Renato Vicentini,Marcelo Menossi
#t2007
#cBMC Bioinformatics
#index1220207
#% 
#!
  
#*A Bayesian nonparametric method for prediction in EST analysis.
#@Antonio Lijoi,Ramsés H. Mena,Igor Prünster
#t2007
#cBMC Bioinformatics
#index1220208
#% 
#!
  
#*Integrated olfactory receptor and microarray gene expression databases.
#@Nian Liu,Chiquito J. Crasto,Minghong Ma
#t2007
#cBMC Bioinformatics
#index1220209
#% 
#!
  
#*Improving model predictions for RNA interference activities that use support vector machine regression by combining and filtering features.
#@Andrew S. Peek
#t2007
#cBMC Bioinformatics
#index1220210
#% 
#!
  
#*BioInfer: a corpus for information extraction in the biomedical domain.
#@Sampo Pyysalo,Filip Ginter,Juho Heimonen,Jari Björne,Jorma Boberg,Jouni Järvinen,Tapio Salakoski
#t2007
#cBMC Bioinformatics
#index1220211
#% 
#!
  
#*Growing functional modules from a seed protein via integration of protein interaction and gene expression data.
#@Ioannis A. Maraziotis,Konstantina Dimitrakopoulou,Anastasios Bezerianos
#t2007
#cBMC Bioinformatics
#index1220212
#% 
#!
  
#*Visualization of three-way comparisons of omics data.
#@Richard Baran,Martin Robert,Makoto Suematsu,Tomoyoshi Soga,Masaru Tomita
#t2007
#cBMC Bioinformatics
#index1220213
#% 
#!
  
#*Glycosylation site prediction using ensembles of Support Vector Machine classifiers.
#@Cornelia Caragea,Jivko Sinapov,Adrian Silvescu,Drena Dobbs,Vasant Honavar
#t2007
#cBMC Bioinformatics
#index1220214
#% 
#!
  
#*Supervised multivariate analysis of sequence groups to identify specificity determining residues.
#@Iain M. Wallace,Desmond G. Higgins
#t2007
#cBMC Bioinformatics
#index1220215
#% 
#!
  
#*Bounds on the distribution of the number of gaps when circles and lines are covered by fragments: Theory and practical application to genomic and metagenomic projects.
#@John Moriarty,Julian R. Marchesi,Anthony Metcalfe
#t2007
#cBMC Bioinformatics
#index1220216
#% 
#!
  
#*ZPS: visualization of recent adaptive evolution of proteins.
#@Sujay Chattopadhyay,Daniel E. Dykhuizen,Evgeni V. Sokurenko
#t2007
#cBMC Bioinformatics
#index1220217
#% 
#!
  
#*AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction.
#@Ayumu Saito,Masao Nagasaki,Masaaki Oyama,Hiroko Kozuka-Hata,Kentaro Semba,Sumio Sugano,Tadashi Yamamoto,Satoru Miyano
#t2007
#cBMC Bioinformatics
#index1220218
#% 
#!
  
#*PepBank - a database of peptides based on sequence text mining and public peptide data sources.
#@Timur Shtatland,Daniel Guettler,Misha Kossodo,Misha Pivovarov,Ralph Weissleder
#t2007
#cBMC Bioinformatics
#index1220219
#% 
#!
  
#*Applying negative rule mining to improve genome annotation.
#@Irena I. Artamonova,Goar Frishman,Dmitrij Frishman
#t2007
#cBMC Bioinformatics
#index1220220
#% 
#!
  
#*Genome bioinformatic analysis of nonsynonymous SNPs.
#@David F. Burke,Catherine L. Worth,Eva-Maria Priego,Tammy M. K. Cheng,Luc J. Smink,John A. Todd,Tom L. Blundell
#t2007
#cBMC Bioinformatics
#index1220221
#% 
#!
  
#*identification of NF-kappaB-regulated genes in pancreatic beta-cells.
#@Najib Naamane,Jacques van Helden,Decio L. Eizirik
#t2007
#cBMC Bioinformatics
#index1220222
#% 
#!
  
#*Large-scale clustering of CAGE tag expression data.
#@Kazuro Shimokawa,Yuko Okamura-Oho,Takio Kurita,Martin C. Frith,Jun Kawai,Piero Carninci,Yoshihide Hayashizaki
#t2007
#cBMC Bioinformatics
#index1220223
#% 
#!
  
#*BioPP: a tool for web-publication of biological networks.
#@Ganesh A. Viswanathan,German Nudelman,Sonali Patil,Stuart C. Sealfon
#t2007
#cBMC Bioinformatics
#index1220224
#% 
#!
  
#*PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results.
#@Ji He,Xinbin Dai,Xuechun Zhao
#t2007
#cBMC Bioinformatics
#index1220225
#% 
#!
  
#*Flexible mapping of homology onto structure with Homolmapper.
#@Nathan C. Rockwell,J. Clark Lagarias
#t2007
#cBMC Bioinformatics
#index1220226
#% 
#!
  
#*Missing channels in two-colour microarray experiments: Combining single-channel and two-channel data.
#@Andy G. Lynch,David E. Neal,John D. Kelly,Glyn J. Burtt,Natalie P. Thorne
#t2007
#cBMC Bioinformatics
#index1220227
#% 
#!
  
#*Analysis of the role of retrotransposition in gene evolution in vertebrates.
#@Zhan Yu,David Morais,Mahine Ivanga,Paul M. Harrison
#t2007
#cBMC Bioinformatics
#index1220228
#% 
#!
  
#*Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis.
#@Chun-Chi Liu,Chin-Chung Lin,Ker-Chau Li,Wen-Shyen E. Chen,Jiun-Ching Chen,Ming-Te Yang,Pan-Chyr Yang,Pei-Chun Chang,Jeremy J. W. Chen
#t2007
#cBMC Bioinformatics
#index1220229
#% 
#!
  
#*Orthogonal projections to latent structures as a strategy for microarray data normalization.
#@Max Bylesjö,Daniel Eriksson,Andreas Sjödin,Stefan Jansson,Thomas Moritz,Johan Trygg
#t2007
#cBMC Bioinformatics
#index1220230
#% 
#!
  
#*A novel approach to sequence validating protein expression clones with automated decision making.
#@Elena Taycher,Andreas Rolfs,Yanhui Hu,Dongmei Zuo,Stephanie E. Mohr,Janice Williamson,Joshua LaBaer
#t2007
#cBMC Bioinformatics
#index1220231
#% 
#!
  
#*Direct maximum parsimony phylogeny reconstruction from genotype data.
#@Srinath Sridhar,Fumei Lam,Guy E. Blelloch,R. Ravi,Russell Schwartz
#t2007
#cBMC Bioinformatics
#index1220232
#% 
#!
  
#*Reconstruction of human protein interolog network using evolutionary conserved network.
#@Tao-Wei Huang,Chung-Yen Lin,Cheng-Yan Kao
#t2007
#cBMC Bioinformatics
#index1220233
#% 
#!
  
#*Statistical significance of cis-regulatory modules.
#@Dustin E. Schones,Andrew D. Smith,Michael Q. Zhang
#t2007
#cBMC Bioinformatics
#index1220234
#% 
#!
  
#*GOSim - an R-package for computation of information theoretic GO similarities between terms and gene products.
#@Holger Fröhlich,Nora Speer,Annemarie Poustka,Tim Beißbarth
#t2007
#cBMC Bioinformatics
#index1220235
#% 
#!
  
#*- software for chromosome walking in unassembled genomes.
#@Qunfeng Dong,Matthew D. Wilkerson,Volker Brendel
#t2007
#cBMC Bioinformatics
#index1220236
#% 
#!
  
#*Toxicogenomic analysis incorporating operon-transcriptional coupling and toxicant concentration-expression response: analysis of MX-treated .
#@William O. Ward,Carol D. Swartz,Steffen Porwollik,Sarah H. Warren,Nancy M. Hanley,Geremy W. Knapp,Michael McClelland,David M. DeMarini
#t2007
#cBMC Bioinformatics
#index1220237
#% 
#!
  
#*Automated smoother for the numerical decoupling of dynamics models.
#@Marco Vilela,Carlos Cristiano H. Borges,Susana Vinga,Ana Tereza R. Vasconcelos,Helena Santos,Eberhard O. Voit,Jonas S. Almeida
#t2007
#cBMC Bioinformatics
#index1220238
#% 
#!
  
#*High-throughput identification of interacting protein-protein binding sites.
#@Jo-Lan Chung,Wei Wang,Philip E. Bourne
#t2007
#cBMC Bioinformatics
#index1220239
#% 
#!
  
#*Identifying protein complexes directly from high-throughput TAP data with Markov random fields.
#@Wasinee Rungsarityotin,Roland Krause,Arno Schödl,Alexander Schliep
#t2007
#cBMC Bioinformatics
#index1220240
#% 
#!
  
#*The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data.
#@B. D. Pascal,M. J. Chalmers,S. A. Busby,C. C. Mader,M. R. Southern,N. F. Tsinoremas,P. R. Griffin
#t2007
#cBMC Bioinformatics
#index1220241
#% 
#!
  
#*Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries.
#@Corinne Dahinden,Giovanni Parmigiani,Mark C. Emerick,Peter Bühlmann
#t2007
#cBMC Bioinformatics
#index1220242
#% 
#!
  
#*Bioinformatic identification of novel putative photoreceptor specific -elements.
#@Charles G. Danko,Vera A. McIlvain,Maochun Qin,Barry E. Knox,Arkady M. Pertsov
#t2007
#cBMC Bioinformatics
#index1220243
#% 
#!
  
#*Bioinformatics analysis of the early inflammatory response in a rat thermal injury model.
#@Eric Yang,Timothy Maguire,Martin L. Yarmush,Francois Berthiaume,Ioannis P. Androulakis
#t2007
#cBMC Bioinformatics
#index1220244
#% 
#!
  
#*Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing.
#@Tobias Wittkop,Jan Baumbach,Francisco P. Lobo,Sven Rahmann
#t2007
#cBMC Bioinformatics
#index1220245
#% 
#!
  
#*Genome Expression Pathway Analysis Tool - Analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context.
#@Markus Weniger,Julia C. Engelmann,Jörg Schultz
#t2007
#cBMC Bioinformatics
#index1220246
#% 
#!
  
#*'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools.
#@Yao Qing Shen,Gertraud Burger
#t2007
#cBMC Bioinformatics
#index1220247
#% 
#!
  
#*Application of a correlation correction factor in a microarray cross-platform reproducibility study.
#@Kellie J. Archer,Catherine I. Dumur,G. Scott Taylor,Michael D. Chaplin,Anthony Guiseppi-Elie,Geraldine Grant,Andrea Ferreira-Gonzalez,Carleton T. Garrett
#t2007
#cBMC Bioinformatics
#index1220248
#% 
#!
  
#*TagSmart: analysis and visualization for yeast mutant fitness data measured by tag microarrays.
#@Chulyun Kim,Sangkyum Kim,Russell Dorer,Dan Xie,Jiawei Han,Sheng Zhong
#t2007
#cBMC Bioinformatics
#index1220249
#% 
#!
  
#*Integrating sequence and structural biology with DAS.
#@Andreas Prlic,Thomas A. Down,Eugene Kulesha,Robert D. Finn,Andreas Kähäri,Tim J. P. Hubbard
#t2007
#cBMC Bioinformatics
#index1220250
#% 
#!
  
#*GeneBins: a database for classifying gene expression data, with application to plant genome arrays.
#@Nicolas Goffard,Georg Weiller
#t2007
#cBMC Bioinformatics
#index1220251
#% 
#!
  
#*Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment.
#@Paolo Ferragina,Raffaele Giancarlo,Valentina Greco,Giovanni Manzini,Gabriel Valiente
#t2007
#cBMC Bioinformatics
#index1220252
#% 
#!
  
#*Haplotype-based score test for linkage in nuclear families.
#@Chung Mo Nam,Dae Ryong Kang,Jinheum Kim
#t2007
#cBMC Bioinformatics
#index1220253
#% 
#!
  
#*A comprehensive evaluation of SAM, the SAM R-package and a simple modification to improve its performance.
#@Shunpu Zhang
#t2007
#cBMC Bioinformatics
#index1220254
#% 
#!
  
#*Meta-analysis of several gene lists for distinct types of cancer: A simple way to reveal common prognostic markers.
#@Xinan Yang,Xiao Sun
#t2007
#cBMC Bioinformatics
#index1220255
#% 
#!
  
#*Prediction potential of candidate biomarker sets identified and validated on gene expression data from multiple datasets.
#@Michael Gormley,William Dampier,Adam Ertel,Bilge Karaçali,Aydin Tozeren
#t2007
#cBMC Bioinformatics
#index1220256
#% 
#!
  
#*Relationship between insertion/deletion (indel) frequency of proteins and essentiality.
#@Simon K. Chan,Michael Hsing,Fereydoun Hormozdiari,Artem Cherkasov
#t2007
#cBMC Bioinformatics
#index1220257
#% 
#!
  
#*TMM@: a web application for the analysis of transmembrane helix mobility.
#@Lars Skjaerven,Inge Jonassen,Nathalie Reuter
#t2007
#cBMC Bioinformatics
#index1220258
#% 
#!
  
#*A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments.
#@Mark D. Robinson,David P. De Souza,Woon Wai Keen,Eleanor C. Saunders,Malcolm J. McConville,Terence P. Speed,Vladimir A. Likic
#t2007
#cBMC Bioinformatics
#index1220259
#% 
#!
  
#*Large scale statistical inference of signaling pathways from RNAi and microarray data.
#@Holger Fröhlich,Mark Fellmann,Holger Sültmann,Annemarie Poustka,Tim Beißbarth
#t2007
#cBMC Bioinformatics
#index1220260
#% 
#!
  
#*msmsEval: tandem mass spectral quality assignment for high-throughput proteomics.
#@Jason W. H. Wong,Matthew J. Sullivan,Hugh M. Cartwright,Gerard Cagney
#t2007
#cBMC Bioinformatics
#index1220261
#% 
#!
  
#*Regulation of metabolic networks by small molecule metabolites.
#@Alex Gutteridge,Minoru Kanehisa,Susumu Goto
#t2007
#cBMC Bioinformatics
#index1220262
#% 
#!
  
#*Highlighting computations in bioscience and bioinformatics: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB07).
#@Guoqing Lu,Jun Ni
#t2008
#cBMC Bioinformatics
#index1220263
#% 
#!
  
#*Dynamic simulation of regulatory networks using SQUAD.
#@Alessandro Di Cara,Abhishek Garg,Giovanni De Micheli,Ioannis Xenarios,Luis Mendoza
#t2007
#cBMC Bioinformatics
#index1220264
#% 
#!
  
#*Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions.
#@Davide Corà,Ferdinando Di Cunto,Michele Caselle,Paolo Provero
#t2007
#cBMC Bioinformatics
#index1220265
#% 
#!
  
#*Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms.
#@Menaka Rajapakse,Bertil Schmidt,Lin Feng,Vladimir Brusic
#t2007
#cBMC Bioinformatics
#index1220266
#% 
#!
  
#*Impact of image segmentation on high-content screening data quality for SK-BR-3 cells.
#@Andrew A. Hill,Peter LaPan,Yizheng Li,Steve Haney
#t2007
#cBMC Bioinformatics
#index1220267
#% 
#!
  
#*Hinge Atlas: relating protein sequence to sites of structural flexibility.
#@Samuel Flores,Long J. Lu,Julie Yang,Nicholas Carriero,Mark Gerstein
#t2007
#cBMC Bioinformatics
#index1220268
#% 
#!
  
#*Insertions and the emergence of novel protein structure: a structure-based phylogenetic study of insertions.
#@Haiyan Jiang,Christian Blouin
#t2007
#cBMC Bioinformatics
#index1220269
#% 
#!
  
#*PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments.
#@Daniel R. Caffrey,Paul H. Dana,Vidhya Mathur,Marco Ocano,Eun-Jong Hong,Yaoyu E. Wang,Shyamal Somaroo,Brian E. Caffrey,Shobha Potluri,Enoch S. Huang
#t2007
#cBMC Bioinformatics
#index1220270
#% 
#!
  
#*A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks.
#@Asawari Samant,Babatunde A. Ogunnaike,Dionisios G. Vlachos
#t2007
#cBMC Bioinformatics
#index1220271
#% 
#!
  
#*TBMap: a taxonomic perspective on the phylogenetic database TreeBASE.
#@Roderic D. M. Page
#t2007
#cBMC Bioinformatics
#index1220272
#% 
#!
  
#*DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.
#@Brad T. Sherman,Da Wei Huang,Qina Tan,Yongjian Guo,Stephan Bour,David Liu,Robert M. Stephens,Michael W. Baseler,H. Clifford Lane,Richard A. Lempicki
#t2007
#cBMC Bioinformatics
#index1220273
#% 
#!
  
#*Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation.
#@Kathrin Klee,Rebecca Ernst,Manuel Spannagl,Klaus F. X. Mayer
#t2007
#cBMC Bioinformatics
#index1220274
#% 
#!
  
#*Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model.
#@Ryoko Morioka,Shigehiko Kanaya,Masami Y. Hirai,Mitsuru Yano,Naotake Ogasawara,Kazuki Saito
#t2007
#cBMC Bioinformatics
#index1220275
#% 
#!
  
#*Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts.
#@Joern Toedling,Oleg Sklyar,Tammo Krueger,Jenny J. Fischer,Silke Sperling,Wolfgang Huber
#t2007
#cBMC Bioinformatics
#index1220276
#% 
#!
  
#*Statistical validation of megavariate effects in ASCA.
#@Daniel J. Vis,Johan A. Westerhuis,Age K. Smilde,Jan van der Greef
#t2007
#cBMC Bioinformatics
#index1220277
#% 
#!
  
#*An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network.
#@Brian J. Holden,John W. Pinney,Simon C. Lovell,Grigoris Amoutzias,David L. Robertson
#t2007
#cBMC Bioinformatics
#index1220278
#% 
#!
  
#*Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation.
#@Helen M. Parsons,Christian Ludwig,Ulrich L. Günther,Mark R. Viant
#t2007
#cBMC Bioinformatics
#index1220279
#% 
#!
  
#*ProCKSI: a decision support system for Protein (Structure) Comparison, Knowledge, Similarity and Information.
#@Daniel Barthel,Jonathan D. Hirst,Jacek Blazewicz,Edmund K. Burke,Natalio Krasnogor
#t2007
#cBMC Bioinformatics
#index1220280
#% 
#!
  
#*AT excursion: a new approach to predict replication origins in viral genomes by locating AT-rich regions.
#@David S. H. Chew,Ming-Ying Leung,Kwok Pui Choi
#t2007
#cBMC Bioinformatics
#index1220281
#% 
#!
  
#*TAMEE: data management and analysis for tissue microarrays.
#@Gerhard G. Thallinger,Kerstin Baumgartner,Martin Pirklbauer,Martina Uray,Elke Pauritsch,Gabor Mehes,Charles R. Buck,Kurt Zatloukal,Zlatko Trajanoski
#t2007
#cBMC Bioinformatics
#index1220282
#% 
#!
  
#*Factor analysis for gene regulatory networks and transcription factor activity profiles.
#@Iosifina Pournara,Lorenz Wernisch
#t2007
#cBMC Bioinformatics
#index1220283
#% 
#!
  
#*HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing.
#@Erik Larsson,Per Lindahl,Petter Mostad
#t2007
#cBMC Bioinformatics
#index1220284
#% 
#!
  
#*Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool.
#@Daniel Dalevi,Todd Z. DeSantis,Jakob Fredslund,Gary L. Andersen,Victor M. Markowitz,Philip Hugenholtz
#t2007
#cBMC Bioinformatics
#index1220285
#% 
#!
  
#*RECOVIR: An application package to automatically identify some single stranded RNA viruses using capsid protein residues that uniquely distinguish among these viruses.
#@Dianhui Zhu,George E. Fox,Sugoto Chakravarty
#t2007
#cBMC Bioinformatics
#index1220286
#% 
#!
  
#*Reconstruction of cell population dynamics using CFSE.
#@Andrew Yates,Cliburn Chan,Jessica Strid,Simon Moon,Robin Callard,Andrew J. T. George,Jaroslav Stark
#t2007
#cBMC Bioinformatics
#index1220287
#% 
#!
  
#*pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data.
#@Randall Hulshizer,Eric M. Blalock
#t2007
#cBMC Bioinformatics
#index1220288
#% 
#!
  
#*BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features.
#@Richard Tzong-Han Tsai,Wen-Chi Chou,Ying-Shan Su,Yu-Chun Lin,Cheng-Lung Sung,Hong-Jie Dai,Irene Tzu-Hsuan Yeh,Wei Ku,Ting-Yi Sung,Wen-Lian Hsu
#t2007
#cBMC Bioinformatics
#index1220289
#% 
#!
  
#*Recognition of interferon-inducible sites, promoters, and enhancers.
#@Elena A. Ananko,Yury V. Kondrakhin,Tatyana I. Merkulova,Nikolay A. Kolchanov
#t2007
#cBMC Bioinformatics
#index1220290
#% 
#!
  
#*Identifications of conserved 7-mers in 3'-UTRs and microRNAs in .
#@Jin Gu,Hu Fu,Xuegong Zhang,Yanda Li
#t2007
#cBMC Bioinformatics
#index1220291
#% 
#!
  
#*Integrated network reconstruction, visualization and analysis using YANAsquare.
#@Roland Schwarz,Chunguang Liang,Christoph Kaleta,Mark Kühnel,Eik Hoffmann,Sergei Kuznetsov,Michael Hecker,Gareth Griffiths,Stefan Schuster,Thomas Dandekar
#t2007
#cBMC Bioinformatics
#index1220292
#% 
#!
  
#*AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site.
#@Alexey V. Kochetov,Andrey Palyanov,Igor I. Titov,Dmitry A. Grigorovich,Akinori Sarai,Nikolay A. Kolchanov
#t2007
#cBMC Bioinformatics
#index1220293
#% 
#!
  
#*MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data.
#@Jürgen Hartler,Gerhard G. Thallinger,Gernot Stocker,Alexander Sturn,Thomas R. Burkard,Erik Körner,Robert Rader,Andreas Schmidt,Karl Mechtler,Zlatko Trajanoski
#t2007
#cBMC Bioinformatics
#index1220294
#% 
#!
  
#*Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint.
#@Russell L. Marsden,Tony A. Lewis,Christine A. Orengo
#t2007
#cBMC Bioinformatics
#index1220295
#% 
#!
  
#*Prediction of the burial status of transmembrane residues of helical membrane proteins.
#@Yungki Park,Sikander Hayat,Volkhard Helms
#t2007
#cBMC Bioinformatics
#index1220296
#% 
#!
  
#*Reuse of structural domain-domain interactions in protein networks.
#@Benjamin Schuster-Böckler,Alex Bateman
#t2007
#cBMC Bioinformatics
#index1220297
#% 
#!
  
#*High-throughput sequence alignment using Graphics Processing Units.
#@Michael C. Schatz,Cole Trapnell,Arthur L. Delcher,Amitabh Varshney
#t2007
#cBMC Bioinformatics
#index1220298
#% 
#!
  
#*Sequence similarity is more relevant than species specificity in probabilistic backtranslation.
#@Alfredo Ferro,Rosalba Giugno,Giuseppe Pigola,Alfredo Pulvirenti,Cinzia Di Pietro,Michele Purrello,Marco Ragusa
#t2007
#cBMC Bioinformatics
#index1220299
#% 
#!
  
#*Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data.
#@Ágnes Baross,Allen D. Delaney,H. Irene Li,Tarun Nayar,Stephane Flibotte,Hong Qian,Susanna Y. Chan,Jennifer Asano,Adrian Ally,Manqiu Cao,Patricia Birch,Mabel Brown-John,Nicole Fernandes,Anne Go,Giulia C. Kennedy,Sylvie Langlois,Patrice Eydoux,J. M. Friedman,Marco A. Marra
#t2007
#cBMC Bioinformatics
#index1220300
#% 
#!
  
#*Improved residue contact prediction using support vector machines and a large feature set.
#@Jianlin Cheng,Pierre Baldi
#t2007
#cBMC Bioinformatics
#index1220301
#% 
#!
  
#*Detailed estimation of bioinformatics prediction reliability through the Fragmented Prediction Performance Plots.
#@Oliviero Carugo
#t2007
#cBMC Bioinformatics
#index1220302
#% 
#!
  
#*PADB : Published Association Database.
#@Hwanseok Rhee,Jin-Sung Lee
#t2007
#cBMC Bioinformatics
#index1220303
#% 
#!
  
#*Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics.
#@Xinning Jiang,Xiaogang Jiang,Guanghui Han,Mingliang Ye,Hanfa Zou
#t2007
#cBMC Bioinformatics
#index1220304
#% 
#!
  
#*Correction: Inference of miRNA targets using evolutionary conservation and pathway analysis.
#@Dimos Gaidatzis,Erik van Nimwegen,Jean Hausser,Mihaela Zavolan
#t2007
#cBMC Bioinformatics
#index1220305
#% 
#!
  
#*Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data.
#@Miika Ahdesmäki,Harri Lähdesmäki,Andrew Gracey,Ilya Shmulevich,Olli Yli-Harja
#t2007
#cBMC Bioinformatics
#index1220306
#% 
#!
  
#*Bioclipse: an open source workbench for chemo- and bioinformatics.
#@Ola Spjuth,Tobias Helmus,Egon L. Willighagen,Stefan Kuhn,Martin Eklund,Johannes Wagener,Peter Murray-Rust,Christoph Steinbeck,Jarl E. S. Wikberg
#t2007
#cBMC Bioinformatics
#index1220307
#% 
#!
  
#*A transversal approach to predict gene product networks from ontology-based similarity.
#@Julie Chabalier,Jean Mosser,Anita Burgun
#t2007
#cBMC Bioinformatics
#index1220308
#% 
#!
  
#*A comprehensive system for evaluation of remote sequence similarity detection.
#@Yuan Qi,Ruslan Sadreyev,Yong Wang,Bong-Hyun Kim,Nick V. Grishin
#t2007
#cBMC Bioinformatics
#index1220309
#% 
#!
  
#*A Three Stage Integrative Pathway Search () framework to identify toxicity relevant genes and pathways.
#@Zheng Li,Shireesh Srivastava,Sheenu Mittal,Xuerui Yang,Lufang Sheng,Christina Chan
#t2007
#cBMC Bioinformatics
#index1220310
#% 
#!
  
#*Boolean networks using the chi-square test for inferring large-scale gene regulatory networks.
#@Haseong Kim,Jae K. Lee,Taesung Park
#t2007
#cBMC Bioinformatics
#index1220311
#% 
#!
  
#*Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.
#@James J. Chen,Huey-miin Hsueh,Robert R. Delongchamp,Chien-Ju Lin,Chen-An Tsai
#t2007
#cBMC Bioinformatics
#index1220312
#% 
#!
  
#*Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base.
#@Lucy Skrabanek,Marta Murcia,Michel Bouvier,Lakshmi Devi,Susan R. George,Martin J. Lohse,Graeme Milligan,Richard R. Neubig,Krzysztof Palczewski,Marc Parmentier,Jean-Philippe Pin,Gerrit Vriend,Jonathan A. Javitch,Fabien Campagne,Marta Filizola
#t2007
#cBMC Bioinformatics
#index1220313
#% 
#!
  
#*Improving model construction of profile HMMs for remote homology detection through structural alignment.
#@Juliana S. Bernardes,Alberto M. R. Dávila,Vítor Santos Costa,Gerson Zaverucha
#t2007
#cBMC Bioinformatics
#index1220314
#% 
#!
  
#*A constrained polynomial regression procedure for estimating the local False Discovery Rate.
#@Cyril Dalmasso,Avner Bar-Hen,Philippe Broët
#t2007
#cBMC Bioinformatics
#index1220315
#% 
#!
  
#*Characterization and simulation of cDNA microarray spots using a novel mathematical model.
#@Hye Young Kim,Seo Eun Lee,Min Jung Kim,Jin Il Han,Bo Kyung Kim,Yong-Sung Lee,Young Seek Lee,Jin Hyuk Kim
#t2007
#cBMC Bioinformatics
#index1220316
#% 
#!
  
#*OReFiL: an online resource finder for life sciences.
#@Yasunori Yamamoto,Toshihisa Takagi
#t2007
#cBMC Bioinformatics
#index1220317
#% 
#!
  
#*An efficient grid layout algorithm for biological networks utilizing various biological attributes.
#@Kaname Kojima,Masao Nagasaki,Euna Jeong,Mitsuru Kato,Satoru Miyano
#t2007
#cBMC Bioinformatics
#index1220318
#% 
#!
  
#*Discovering biomarkers from gene expression data for predicting cancer subgroups using neural networks and relational fuzzy clustering.
#@Nikhil R. Pal,Kripamoy Aguan,Animesh Sharma,Shun-ichi Amari
#t2007
#cBMC Bioinformatics
#index1220319
#% 
#!
  
#*160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA).
#@Isaac T. S. Li,Warren Shum,Kevin Truong
#t2007
#cBMC Bioinformatics
#index1220320
#% 
#!
  
#*MATLIGN: a motif clustering, comparison and matching tool.
#@Matti Kankainen,Ari Löytynoja
#t2007
#cBMC Bioinformatics
#index1220321
#% 
#!
  
#*RepSeq - A database of amino acid repeats present in lower eukaryotic pathogens.
#@Daniel P. Depledge,Ryan P. J. Lower,Deborah F. Smith
#t2007
#cBMC Bioinformatics
#index1220322
#% 
#!
  
#*Precise protein quantification based on peptide quantification using iTRAQ.
#@Andreas M. Boehm,Stephanie Pütz,Daniela Altenhöfer,Albert Sickmann,Michael Falk
#t2007
#cBMC Bioinformatics
#index1220323
#% 
#!
  
#*Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory.
#@Feng Luo,Yunfeng Yang,Jianxin Zhong,Haichun Gao,Latifur Khan,Dorothea K. Thompson,Jizhong Zhou
#t2007
#cBMC Bioinformatics
#index1220324
#% 
#!
  
#*A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.
#@Rudi Alberts,Peter Terpstra,Menno Hardonk,Leonid V. Bystrykh,Gerald de Haan,Rainer Breitling,Jan Peter Nap,Ritsert C. Jansen
#t2007
#cBMC Bioinformatics
#index1220325
#% 
#!
  
#*Improving gene set analysis of microarray data by SAM-GS.
#@Irina Dinu,John D. Potter,Thomas Mueller,Qi Liu,Adeniyi J. Adewale,Gian S. Jhangri,Gunilla Einecke,Konrad S. Famulski,Philip Halloran,Yutaka Yasui
#t2007
#cBMC Bioinformatics
#index1220326
#% 
#!
  
#*An open source infrastructure for managing knowledge and finding potential collaborators in a domain-specific subset of PubMed, with an example from human genome epidemiology.
#@Wei Yu,Ajay Yesupriya,Anja Wulf,Junfeng Qu,Muin J. Khoury,Marta Gwinn
#t2007
#cBMC Bioinformatics
#index1220327
#% 
#!
  
#*SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets.
#@Carmen Lai,Hugo M. Horlings,Marc J. van de Vijver,Eric H. van Beers,Petra M. Nederlof,Lodewyk F. A. Wessels,Marcel J. T. Reinders
#t2007
#cBMC Bioinformatics
#index1220328
#% 
#!
  
#*Algebraic correction methods for computational assessment of clone overlaps in DNA fingerprint mapping.
#@Michael C. Wendl
#t2007
#cBMC Bioinformatics
#index1220329
#% 
#!
  
#*An adaptive bin framework search method for a beta-sheet protein homopolymer model.
#@Alena Shmygelska,Holger H. Hoos
#t2007
#cBMC Bioinformatics
#index1220330
#% 
#!
  
#*Comparing segmentations by applying randomization techniques.
#@Niina Haiminen,Heikki Mannila,Evimaria Terzi
#t2007
#cBMC Bioinformatics
#index1220331
#% 
#!
  
#*Statistical tests to compare motif count exceptionalities.
#@Stéphane Robin,Sophie Schbath,Vincent Vandewalle
#t2007
#cBMC Bioinformatics
#index1220332
#% 
#!
  
#*Dendroscope: An interactive viewer for large phylogenetic trees.
#@Daniel H. Huson,Daniel C. Richter,Christian Rausch,Tobias Dezulian,Markus Franz,Regula Rupp
#t2007
#cBMC Bioinformatics
#index1220333
#% 
#!
  
#*Weighted analysis of general microarray experiments.
#@Anders Sjögren,Erik Kristiansson,Mats Rudemo,Olle Nerman
#t2007
#cBMC Bioinformatics
#index1220334
#% 
#!
  
#*Computer-aided identification of polymorphism sets diagnostic for groups of bacterial and viral genetic variants.
#@Erin P. Price,John Inman-Bamber,Venugopal Thiruvenkataswamy,Flavia Huygens,Philip M. Giffard
#t2007
#cBMC Bioinformatics
#index1220335
#% 
#!
  
#*Identifying dynamical modules from genetic regulatory systems: applications to the segment polarity network.
#@David J. Irons,Nicholas A. M. Monk
#t2007
#cBMC Bioinformatics
#index1220336
#% 
#!
  
#*MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans.
#@Ting-Hua Huang,Bin Fan,Max F. Rothschild,Zhi-Liang Hu,Kui Li,Shu-Hong Zhao
#t2007
#cBMC Bioinformatics
#index1220337
#% 
#!
  
#*Multivariate Analysis and Visualization of Splicing Correlations in Single-Gene Transcriptomes.
#@Mark C. Emerick,Giovanni Parmigiani,William S. Agnew
#t2007
#cBMC Bioinformatics
#index1220338
#% 
#!
  
#*Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data.
#@Zailong Wang,Pearlly Yan,Dustin P. Potter,Charis Eng,Tim Hui-Ming Huang,Shili Lin
#t2007
#cBMC Bioinformatics
#index1220339
#% 
#!
  
#*Accuracy of structure-based sequence alignment of automatic methods.
#@Changhoon Kim,Byungkook Lee
#t2007
#cBMC Bioinformatics
#index1220340
#% 
#!
  
#*False positive reduction in protein-protein interaction predictions using gene ontology annotations.
#@Mahmood A. Mahdavi,Yen-Han Lin
#t2007
#cBMC Bioinformatics
#index1220341
#% 
#!
  
#*A novel ensemble learning method for computational identification of DNA binding sites.
#@Arijit Chakravarty,Jonathan M. Carlson,Radhika S. Khetani,Robert H. Gross
#t2007
#cBMC Bioinformatics
#index1220342
#% 
#!
  
#*LIMPIC: a computational method for the separation of protein MALDI-TOF-MS signals from noise.
#@Dante Mantini,Francesca Petrucci,Damiana Pieragostino,Piero Del Boccio,Marta Di Nicola,Carmine Di Ilio,Giorgio Federici,Paolo Sacchetta,Silvia Comani,Andrea Urbani
#t2007
#cBMC Bioinformatics
#index1220343
#% 
#!
  
#*Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory.
#@Abdallah Sayyed-Ahmad,Kagan Tuncay,Peter J. Ortoleva
#t2007
#cBMC Bioinformatics
#index1220344
#% 
#!
  
#*Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach.
#@Masashi Fujita,Hisaaki Mihara,Susumu Goto,Nobuyoshi Esaki,Minoru Kanehisa
#t2007
#cBMC Bioinformatics
#index1220345
#% 
#!
  
#*Progressive multiple sequence alignments from triplets.
#@Matthias Kruspe,Peter F. Stadler
#t2007
#cBMC Bioinformatics
#index1220346
#% 
#!
  
#*ProbCD: enrichment analysis accounting for categorization uncertainty.
#@Ricardo Z. N. Vêncio,Ilya Shmulevich
#t2007
#cBMC Bioinformatics
#index1220347
#% 
#!
  
#*On the detection of functionally coherent groups of protein domains with an extension to protein annotation.
#@William A. McLaughlin,Ken Chen,Tingjun Hou,Wei Wang
#t2007
#cBMC Bioinformatics
#index1220348
#% 
#!
  
#*Statistical significance of quantitative PCR.
#@Yann Karlen,Alan McNair,Sébastien Perseguers,Christian Mazza,Nicolas Mermod
#t2007
#cBMC Bioinformatics
#index1220349
#% 
#!
  
#*Domain motions of Argonaute, the catalytic engine of RNA interference.
#@Dengming Ming,Michael E. Wall,Kevin Y. Sanbonmatsu
#t2007
#cBMC Bioinformatics
#index1220350
#% 
#!
  
#*Bayesian meta-analysis models for microarray data: a comparative study.
#@Erin M. Conlon,Joon J. Song,Anna Liu
#t2007
#cBMC Bioinformatics
#index1220351
#% 
#!
  
#*TomoJ: tomography software for three-dimensional reconstruction in transmission electron microscopy.
#@Cédric Messaoudi,Thomas Boudier,Carlos Oscar Sánchez Sorzano,Sergio Marco
#t2007
#cBMC Bioinformatics
#index1220352
#% 
#!
  
#*Bio: : NEXUS: a Perl API for the NEXUS format for comparative biological data.
#@Thomas Hladish,Vivek Gopalan,Chengzhi Liang,Wei-Gang Qiu,Peter Yang,Arlin Stoltzfus
#t2007
#cBMC Bioinformatics
#index1220353
#% 
#!
  
#*Gene selection with multiple ordering criteria.
#@James J. Chen,Chen-An Tsai,ShengLi Tzeng,Chun-Houh Chen
#t2007
#cBMC Bioinformatics
#index1220354
#% 
#!
  
#*Estimating genealogies from linked marker data: a Bayesian approach.
#@Dario Gasbarra,Matti Pirinen,Mikko J. Sillanpää,Elja Arjas
#t2007
#cBMC Bioinformatics
#index1220355
#% 
#!
  
#*On the analysis of glycomics mass spectrometry data via the regularized area under the ROC curve.
#@Jingjing Ye,Hao Liu,Crystal Kirmiz,Carlito B. Lebrilla,David M. Rocke
#t2007
#cBMC Bioinformatics
#index1220356
#% 
#!
  
#*MetaQTL: a package of new computational methods for the meta-analysis of QTL mapping experiments.
#@Jean-Baptiste Veyrieras,Bruno Goffinet,Alain Charcosset
#t2007
#cBMC Bioinformatics
#index1220357
#% 
#!
  
#*The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications.
#@J. Christopher Bare,Paul T. Shannon,Amy K. Schmid,Nitin S. Baliga
#t2007
#cBMC Bioinformatics
#index1220358
#% 
#!
  
#*Single TNFtrimers mediating NF-B activation: stochastic robustness of NF-B signaling.
#@Tomasz Lipniacki,Krzysztof Puszynski,Pawel Paszek,Allan R. Brasier,Marek Kimmel
#t2007
#cBMC Bioinformatics
#index1220359
#% 
#!
  
#*PubMed related articles: a probabilistic topic-based model for content similarity.
#@Jimmy J. Lin,W. John Wilbur
#t2007
#cBMC Bioinformatics
#index1220360
#% 
#!
  
#*Application of amino acid occurrence for discriminating different folding types of globular proteins.
#@Y.-h. Taguchi,M. Michael Gromiha
#t2007
#cBMC Bioinformatics
#index1220361
#% 
#!
  
#*Gene selection for classification of microarray data based on the Bayes error.
#@Ji-Gang Zhang,Hong-Wen Deng
#t2007
#cBMC Bioinformatics
#index1220362
#% 
#!
  
#*Correction: Splice site identification using probabilistic parameters and SVM classification.
#@A. K. M. A. Baten,Bill C. H. Chang,Saman K. Halgamuge,Jason Li
#t2007
#cBMC Bioinformatics
#index1220363
#% 
#!
  
#*Nearest Neighbor Networks: clustering expression data based on gene neighborhoods.
#@Curtis Huttenhower,Avi I. Flamholz,Jessica N. Landis,Sauhard Sahi,Chad L. Myers,Kellen L. Olszewski,Matthew A. Hibbs,Nathan O. Siemers,Olga G. Troyanskaya,Hilary A. Coller
#t2007
#cBMC Bioinformatics
#index1220364
#% 
#!
  
#*The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.
#@Richard G. Côté,Philip Jones,Lennart Martens,Samuel Kerrien,Florian Reisinger,Quan Lin,Rasko Leinonen,Rolf Apweiler,Henning Hermjakob
#t2007
#cBMC Bioinformatics
#index1220365
#% 
#!
  
#*Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition.
#@Takeyuki Tamura,Tatsuya Akutsu
#t2007
#cBMC Bioinformatics
#index1220366
#% 
#!
  
#*The Personal Sequence Database: a suite of tools to create and maintain web-accessible sequence databases.
#@Scott A. Givan,Christopher M. Sullivan,James C. Carrington
#t2007
#cBMC Bioinformatics
#index1220367
#% 
#!
  
#*Toward the automated generation of genome-scale metabolic networks in the SEED.
#@Matthew DeJongh,Kevin Formsma,Paul Boillot,John Gould,Matthew Rycenga,Aaron A. Best
#t2007
#cBMC Bioinformatics
#index1220368
#% 
#!
  
#*Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation.
#@Rob Jelier,Guido Jenster,Lambert C. J. Dorssers,Bas J. Wouters,Peter J. M. Hendriksen,Barend Mons,Ruud Delwel,Jan A. Kors
#t2007
#cBMC Bioinformatics
#index1220369
#% 
#!
  
#*Selecting dissimilar genes for multi-class classification, an application in cancer subtyping.
#@Zhipeng Cai,Randy Goebel,Mohammad R. Salavatipour,Guohui Lin
#t2007
#cBMC Bioinformatics
#index1220370
#% 
#!
  
#*A general and efficient method for estimating continuous IBD functions for use in genome scans for QTL.
#@Francois Besnier,Örjan Carlborg
#t2007
#cBMC Bioinformatics
#index1220371
#% 
#!
  
#*TAP score: torsion angle propensity normalization applied to local protein structure evaluation.
#@Silvio C. E. Tosatto,Roberto Battistutta
#t2007
#cBMC Bioinformatics
#index1220372
#% 
#!
  
#*Relating destabilizing regions to known functional sites in proteins.
#@Benoit H. Dessailly,Marc F. Lensink,Shoshana J. Wodak
#t2007
#cBMC Bioinformatics
#index1220373
#% 
#!
  
#*Large-scale integration of cancer microarray data identifies a robust common cancer signature.
#@Lei Xu,Donald Geman,Raimond L. Winslow
#t2007
#cBMC Bioinformatics
#index1220374
#% 
#!
  
#*Fast computation of distance estimators.
#@Isaac Elias,Jens Lagergren
#t2007
#cBMC Bioinformatics
#index1220375
#% 
#!
  
#*A survey of orphan enzyme activities.
#@Yannick Pouliot,Peter D. Karp
#t2007
#cBMC Bioinformatics
#index1220376
#% 
#!
  
#*Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D.
#@Aleksey A. Porollo,Jaroslaw Meller
#t2007
#cBMC Bioinformatics
#index1220377
#% 
#!
  
#*Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control.
#@Ana P. Teixeira,Carlos Alves,Paula M. Alves,Manuel J. T. Carrondo,Rui Oliveira
#t2007
#cBMC Bioinformatics
#index1220378
#% 
#!
  
#*An evolutionary method for learning HMM structure: prediction of protein secondary structure.
#@Kyoung-Jae Won,Thomas Hamelryck,Adam Prügel-Bennett,Anders Krogh
#t2007
#cBMC Bioinformatics
#index1220379
#% 
#!
  
#*XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences.
#@Aaron M. Newman,James B. Cooper
#t2007
#cBMC Bioinformatics
#index1220380
#% 
#!
  
#*Conceptual-level workflow modeling of scientific experiments using NMR as a case study.
#@Kacy K. Verdi,Heidi J. C. Ellis,Michael R. Gryk
#t2007
#cBMC Bioinformatics
#index1220381
#% 
#!
  
#*eQTL Viewer: visualizing how sequence variation affects genome-wide transcription.
#@Wei Zou,David L. Aylor,Zhao-Bang Zeng
#t2007
#cBMC Bioinformatics
#index1220382
#% 
#!
  
#*False occurrences of functional motifs in protein sequences highlight evolutionary constraints.
#@Allegra Via,Pier Federico Gherardini,Enrico Ferraro,Gabriele Ausiello,Gianpaolo Scalia Tomba,Manuela Helmer-Citterich
#t2007
#cBMC Bioinformatics
#index1220383
#% 
#!
  
#*Identification of sequence motifs significantly associated with antisense activity.
#@Kyle A. McQuisten,Andrew S. Peek
#t2007
#cBMC Bioinformatics
#index1220384
#% 
#!
  
#*Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions.
#@Victor G. Levitsky,Elena V. Ignatieva,Elena A. Ananko,Igor I. Turnaev,Tatyana I. Merkulova,Nikolay A. Kolchanov,T. Charles Hodgman
#t2007
#cBMC Bioinformatics
#index1220385
#% 
#!
  
#*Use of DNA melting simulation software for diagnostic assay design: targeting regions with complex melting curves and confirmation by real-time PCR using intercalating dyes.
#@John P. Rasmussen,Christopher P. Saint,Paul T. Monis
#t2007
#cBMC Bioinformatics
#index1220386
#% 
#!
  
#*Optimization based automated curation of metabolic reconstructions.
#@Vinay Satish Kumar,Madhukar S. Dasika,Costas D. Maranas
#t2007
#cBMC Bioinformatics
#index1220387
#% 
#!
  
#*sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database.
#@Jyoti K. Shah,Harold R. Garner,Michael A. White,David S. Shames,John D. Minna
#t2007
#cBMC Bioinformatics
#index1220388
#% 
#!
  
#*A multiresolution approach to automated classification of protein subcellular location images.
#@Amina Chebira,Yann Barbotin,Charles Jackson,Thomas E. Merryman,Gowri Srinivasa,Robert F. Murphy,Jelena Kovacevic
#t2007
#cBMC Bioinformatics
#index1220389
#% 
#!
  
#*Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach.
#@Carson M. Andorf,Drena Dobbs,Vasant Honavar
#t2007
#cBMC Bioinformatics
#index1220390
#% 
#!
  
#*Stratification bias in low signal microarray studies.
#@Brian J. Parker,Simon Günter,Justin Bedo
#t2007
#cBMC Bioinformatics
#index1220391
#% 
#!
  
#*AGGRESCAN: a server for the prediction and evaluation of "hot spots" of aggregation in polypeptides.
#@Oscar Conchillo-Solé,Natalia S. de Groot,Francesc X. Avilés,Josep Vendrell,Xavier Daura,Salvador Ventura
#t2007
#cBMC Bioinformatics
#index1220392
#% 
#!
  
#*Difference-based clustering of short time-course microarray data with replicates.
#@Jihoon Kim,Ju Han Kim
#t2007
#cBMC Bioinformatics
#index1220393
#% 
#!
  
#*Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences.
#@Stefan Engelen,Fariza Tahi
#t2007
#cBMC Bioinformatics
#index1220394
#% 
#!
  
#*Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties.
#@Jos Boekhorst,Berend Snel
#t2007
#cBMC Bioinformatics
#index1220395
#% 
#!
  
#*Pre-processing Agilent microarray data.
#@Marianna Zahurak,Giovanni Parmigiani,Wayne Yu,Robert B. Scharpf,David Berman,Edward Schaeffer,Shabana Shabbeer,Leslie Cope
#t2007
#cBMC Bioinformatics
#index1220396
#% 
#!
  
#*Identification of DNA-binding proteins using support vector machines and evolutionary profiles.
#@Manish Kumar,Michael M. Gromiha,Gajendra P. S. Raghava
#t2007
#cBMC Bioinformatics
#index1220397
#% 
#!
  
#*Computational RNA secondary structure design: empirical complexity and improved methods.
#@Rosalía Aguirre-Hernández,Holger H. Hoos,Anne Condon
#t2007
#cBMC Bioinformatics
#index1220398
#% 
#!
  
#*Discriminative motif discovery in DNA and protein sequences using the DEME algorithm.
#@Emma Redhead,Timothy L. Bailey
#t2007
#cBMC Bioinformatics
#index1220399
#% 
#!
  
#*Minimus: a fast, lightweight genome assembler.
#@Daniel D. Sommer,Arthur L. Delcher,Steven L. Salzberg,Mihai Pop
#t2007
#cBMC Bioinformatics
#index1220400
#% 
#!
  
#*MPHASYS: a mouse phenotype analysis system.
#@R. Brent Calder,Rudolf B. Beems,Harry van Steeg,I. Saira Mian,Paul H. M. Lohman,Jan Vijg
#t2007
#cBMC Bioinformatics
#index1220401
#% 
#!
  
#*Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.
#@Nikolai Daraselia,Anton Yuryev,Sergei Egorov,Ilya Mazo,Iaroslav Ispolatov
#t2007
#cBMC Bioinformatics
#index1220402
#% 
#!
  
#*Gene network interconnectedness and the generalized topological overlap measure.
#@Andy M. Yip,Steve Horvath
#t2007
#cBMC Bioinformatics
#index1220403
#% 
#!
  
#*A comparison of Affymetrix gene expression arrays.
#@Mark D. Robinson,Terence P. Speed
#t2007
#cBMC Bioinformatics
#index1220404
#% 
#!
  
#*Investigations into the relationship between feedback loops and functional importance of a signal transduction network based on Boolean network modeling.
#@Yung-Keun Kwon,Sun Shim Choi,Kwang-Hyun Cho
#t2007
#cBMC Bioinformatics
#index1220405
#% 
#!
  
#*Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign.
#@Arif Ozgun Harmanci,Gaurav Sharma,David H. Mathews
#t2007
#cBMC Bioinformatics
#index1220406
#% 
#!
  
#*AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip expression arrays with respect to SNPs.
#@Sunita Kumari,Lalit K. Verma,Jennifer W. Weller
#t2007
#cBMC Bioinformatics
#index1220407
#% 
#!
  
#*Orthology prediction at scalable resolution by phylogenetic tree analysis.
#@René T. J. M. van der Heijden,Berend Snel,Vera van Noort,Martijn A. Huynen
#t2007
#cBMC Bioinformatics
#index1220408
#% 
#!
  
#*Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts.
#@Joern Toedling,Oleg Sklyar,Wolfgang Huber
#t2007
#cBMC Bioinformatics
#index1220409
#% 
#!
  
#*A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays.
#@Philippe Lamy,Claus L. Andersen,Lars Dyrskjot,Niels Torring,Carsten Wiuf
#t2007
#cBMC Bioinformatics
#index1220410
#% 
#!
  
#*UbiProt: a database of ubiquitylated proteins.
#@Alexander L. Chernorudskiy,Alejandro Garcia,Eugene V. Eremin,Anastasia S. Shorina,Ekaterina V. Kondratieva,Murat R. Gainullin
#t2007
#cBMC Bioinformatics
#index1220411
#% 
#!
  
#*A cis-regulatory logic simulator.
#@Robert D. Zeigler,Jason Gertz,Barak A. Cohen
#t2007
#cBMC Bioinformatics
#index1220412
#% 
#!
  
#*A full Bayesian hierarchical mixture model for the variance of gene differential expression.
#@Samuel O. M. Manda,Rebecca E. Walls,Mark S. Gilthorpe
#t2007
#cBMC Bioinformatics
#index1220413
#% 
#!
  
#*In silico segmentations of lentivirus envelope sequences.
#@Aurélia Boissin-Quillon,Didier Piau,Caroline Leroux
#t2007
#cBMC Bioinformatics
#index1220414
#% 
#!
  
#*Detecting differential expression in microarray data: comparison of optimal procedures.
#@Elena Perelman,Alexander Ploner,Stefano Calza,Yudi Pawitan
#t2007
#cBMC Bioinformatics
#index1220415
#% 
#!
  
#*Correlation-maximizing surrogate gene space for visual mining of gene expression patterns in developing barley endosperm tissue.
#@Marc Strickert,Nese Sreenivasulu,Björn Usadel,Udo Seiffert
#t2007
#cBMC Bioinformatics
#index1220416
#% 
#!
  
#*Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL.
#@Mikel Egaña Aranguren,Sean Bechhofer,Phillip W. Lord,Ulrike Sattler,Robert D. Stevens
#t2007
#cBMC Bioinformatics
#index1220417
#% 
#!
  
#*Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool 'CubeX'.
#@Tom R. Gaunt,Santiago Rodríguez,Ian N. M. Day
#t2007
#cBMC Bioinformatics
#index1220418
#% 
#!
  
#*panning for a non-competitive peptide inhibitor.
#@Yukiko Yagi,Kotaro Terada,Takahisa Noma,Kazunori Ikebukuro,Koji Sode
#t2007
#cBMC Bioinformatics
#index1220419
#% 
#!
  
#*primetv: a viewer for reconciled trees.
#@Bengt Sennblad,Eva Schreil,Ann-Charlotte Berglund Sonnhammer,Jens Lagergren,Lars Arvestad
#t2007
#cBMC Bioinformatics
#index1220420
#% 
#!
  
#*A response to Yu et al. "A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array", BMC Bioinformatics 2007, 8: 145.
#@Oscar M. Rueda,Ramón Díaz-Uriarte
#t2007
#cBMC Bioinformatics
#index1220421
#% 
#!
  
#*Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online).
#@Chun-Nan Hsu,Jin-Mei Lai,Chia-Hung Liu,Huei-Hun Tseng,Chih-Yun Lin,Kuan-Ting Lin,Hsu-Hua Yeh,Ting-Yi Sung,Wen-Lian Hsu,Li-Jen Su,Sheng-An Lee,Chang-Han Chen,Gen-Cher Lee,D. T. Lee,Yow-Ling Shiue,Chang-Wei Yeh,Chao-Hui Chang,Cheng-Yan Kao,Chi-Ying F. Huang
#t2007
#cBMC Bioinformatics
#index1220422
#% 
#!
  
#*Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization.
#@Markus Bauer,Gunnar W. Klau,Knut Reinert
#t2007
#cBMC Bioinformatics
#index1220423
#% 
#!
  
#*Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets.
#@Guillaume Launay,Raul Mendez,Shoshana J. Wodak,Thomas Simonson
#t2007
#cBMC Bioinformatics
#index1220424
#% 
#!
  
#*Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics.
#@Nico Pfeifer,Andreas Leinenbach,Christian G. Huber,Oliver Kohlbacher
#t2007
#cBMC Bioinformatics
#index1220425
#% 
#!
  
#*PILER-CR: Fast and accurate identification of CRISPR repeats.
#@Robert C. Edgar
#t2007
#cBMC Bioinformatics
#index1220426
#% 
#!
  
#*Evaluation of sample size effect on the identification of haplotype blocks.
#@Dai Osabe,Toshihito Tanahashi,Kyoko Nomura,Shuichi Shinohara,Naoto Nakamura,Toshikazu Yoshikawa,Hiroshi Shiota,Parvaneh Keshavarz,Yuka Yamaguchi,Kiyoshi Kunika,Maki Moritani,Hiroshi Inoue,Mitsuo Itakura
#t2007
#cBMC Bioinformatics
#index1220427
#% 
#!
  
#*Blast sampling for structural and functional analyses.
#@Anne Friedrich,Raymond Ripp,Nicolas Garnier,Emmanuel Bettler,Gilbert Deléage,Olivier Poch,Luc Moulinier
#t2007
#cBMC Bioinformatics
#index1220428
#% 
#!
  
#*BIRCH: A user-oriented, locally-customizable, bioinformatics system.
#@Brian Fristensky
#t2007
#cBMC Bioinformatics
#index1220429
#% 
#!
  
#*SAMPI: Protein Identification with Mass Spectra Alignments.
#@Hans-Michael Kaltenbach,Andreas Wilke,Sebastian Böcker
#t2007
#cBMC Bioinformatics
#index1220430
#% 
#!
  
#*Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements.
#@Sung Tae Doh,Yunyu Zhang,Matthew H. Temple,Li Cai
#t2007
#cBMC Bioinformatics
#index1220431
#% 
#!
  
#*Selective prediction of interaction sites in protein structures with THEMATICS.
#@Ying Wei,Jaeju Ko,Leonel F. Murga,Mary Jo Ondrechen
#t2007
#cBMC Bioinformatics
#index1220432
#% 
#!
  
#*ASH structure alignment package: Sensitivity and selectivity in domain classification.
#@Daron M. Standley,Hiroyuki Toh,Haruki Nakamura
#t2007
#cBMC Bioinformatics
#index1220433
#% 
#!
  
#*VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines.
#@Irini A. Doytchinova,Darren R. Flower
#t2007
#cBMC Bioinformatics
#index1220434
#% 
#!
  
#*Differential analysis for high density tiling microarray data.
#@Srinka Ghosh,Heather A. Hirsch,Edward A. Sekinger,Philipp Kapranov,Kevin Struhl,Thomas R. Gingeras
#t2007
#cBMC Bioinformatics
#index1220435
#% 
#!
  
#*Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips.
#@Andrew P. Harrison,Caroline E. Johnston,Christine A. Orengo
#t2007
#cBMC Bioinformatics
#index1220436
#% 
#!
  
#*A structural analysis of catalytic activities of hammerhead ribozymes.
#@Yu Shao,Susan Wu,Chi Yu Chan,Jessie R. Klapper,Erasmus Schneider,Ye Ding
#t2007
#cBMC Bioinformatics
#index1220437
#% 
#!
  
#*Statistical power of phylo-HMM for evolutionarily conserved element detection.
#@Xiaodan Fan,Jun Zhu,Eric E. Schadt,Jun S. Liu
#t2007
#cBMC Bioinformatics
#index1220438
#% 
#!
  
#*Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide reductases.
#@César L. Avila,Viviana A. Rapisarda,Ricardo N. Farías,Javier De Las Rivas,Rosana Chehín
#t2007
#cBMC Bioinformatics
#index1220439
#% 
#!
  
#*Improved benchmarks for computational motif discovery.
#@Geir Kjetil Sandve,Osman Abul,Vegard Walseng,Finn Drabløs
#t2007
#cBMC Bioinformatics
#index1220440
#% 
#!
  
#*Modeling SAGE tag formation and its effects on data interpretation within a Bayesian framework.
#@Michael A. Gilchrist,Hong Qin,Russell L. Zaretzki
#t2007
#cBMC Bioinformatics
#index1220441
#% 
#!
  
#*Combination of scoring schemes for protein docking.
#@Philipp Heuser,Dietmar Schomburg
#t2007
#cBMC Bioinformatics
#index1220442
#% 
#!
  
#*Gene analogue finder: a GRID solution for finding functionally analogous gene products.
#@Angelica Tulipano,Giacinto Donvito,Flavio Licciulli,Giorgio Pietro Maggi,Andreas Gisel
#t2007
#cBMC Bioinformatics
#index1220443
#% 
#!
  
#*Correlation between structure and temperature in prokaryotic metabolic networks.
#@Kazuhiro Takemoto,Jose C. Nacher,Tatsuya Akutsu
#t2007
#cBMC Bioinformatics
#index1220444
#% 
#!
  
#*SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA sequences.
#@Fathi Elloumi,Martha Nason
#t2007
#cBMC Bioinformatics
#index1220445
#% 
#!
  
#*VSGdb: a database for trypanosome variant surface glycoproteins, a large and diverse family of coiled coil proteins.
#@Lucio Marcello,Suraj Menon,Pauline Ward,Jonathan M. Wilkes,Nicola G. Jones,Mark Carrington,J. David Barry
#t2007
#cBMC Bioinformatics
#index1220446
#% 
#!
  
#*Model based analysis of real-time PCR data from DNA binding dye protocols.
#@Mariano J. Alvarez,Guillermo J. Vila-Ortiz,Mariano C. Salibe,Osvaldo L. Podhajcer,Fernando J. Pitossi
#t2007
#cBMC Bioinformatics
#index1220447
#% 
#!
  
#*Topology independent protein structural alignment.
#@Joe Dundas,T. Andrew Binkowski,Bhaskar DasGupta,Jie Liang
#t2007
#cBMC Bioinformatics
#index1220448
#%861924
#%609971
#!
  
#*Efficacy of different protein descriptors in predicting protein functional families.
#@Serene A. K. Ong,Hong Huang Lin,Yu Zong Chen,Ze-Rong Li,Zhi Wei Cao
#t2007
#cBMC Bioinformatics
#index1220449
#% 
#!
  
#*Effective selection of informative SNPs and classification on the HapMap genotype data.
#@Nina Zhou,Lipo Wang
#t2007
#cBMC Bioinformatics
#index1220450
#% 
#!
  
#*BNDB - The Biochemical Network Database.
#@Jan Küntzer,Christina Backes,Torsten Blum,Andreas Gerasch,Michael Kaufmann,Oliver Kohlbacher,Hans-Peter Lenhof
#t2007
#cBMC Bioinformatics
#index1220451
#% 
#!
  
#*A comparative study of S/MAR prediction tools.
#@Kenneth Evans,Sascha Ott,Annika Hansen,Georgy Koentges,Lorenz Wernisch
#t2007
#cBMC Bioinformatics
#index1220452
#% 
#!
  
#*Locational distribution of gene functional classes in .
#@Michael C. Riley,Amanda Clare,Ross D. King
#t2007
#cBMC Bioinformatics
#index1220453
#% 
#!
  
#*fREDUCE: Detection of degenerate regulatory elements using correlation with expression.
#@Randy Z. Wu,Christina Chaivorapol,Jiashun Zheng,Hao Li,Shoudan Liang
#t2007
#cBMC Bioinformatics
#index1220454
#% 
#!
  
#*Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information.
#@Gianluca Pollastri,Alberto J. M. Martin,Catherine Mooney,Alessandro Vullo
#t2007
#cBMC Bioinformatics
#index1220455
#% 
#!
  
#*Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors.
#@Xueping Yu,Jimmy J. Lin,Donald J. Zack,Jiang Qian
#t2007
#cBMC Bioinformatics
#index1220456
#% 
#!
  
#*Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs.
#@Mamoon Rashid,Sudipto Saha,Gajendra P. S. Raghava
#t2007
#cBMC Bioinformatics
#index1220457
#% 
#!
  
#*How to decide which are the most pertinent overly-represented features during gene set enrichment analysis.
#@Roland Barriot,David J. Sherman,Isabelle Dutour
#t2007
#cBMC Bioinformatics
#index1220458
#% 
#!
  
#*Predicting the phenotypic effects of non-synonymous single nucleotide polymorphisms based on support vector machines.
#@Jian Tian,Ningfeng Wu,Xuexia Guo,Jun Guo,Juhua Zhang,Yunliu Fan
#t2007
#cBMC Bioinformatics
#index1220459
#% 
#!
  
#*A replica exchange Monte Carlo algorithm for protein folding in the HP model.
#@Chris Thachuk,Alena Shmygelska,Holger H. Hoos
#t2007
#cBMC Bioinformatics
#index1220460
#% 
#!
  
#*How accurately is ncRNA aligned within whole-genome multiple alignments?
#@Adrienne X. Wang,Walter L. Ruzzo,Martin Tompa
#t2007
#cBMC Bioinformatics
#index1220461
#% 
#!
  
#*AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa.
#@Alexandros Stamatakis,Alexander F. Auch,Jan P. Meier-Kolthoff,Markus Göker
#t2007
#cBMC Bioinformatics
#index1220462
#% 
#!
  
#*Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements.
#@Hui Lan,Rachel Carson,Nicholas J. Provart,Anthony J. Bonner
#t2007
#cBMC Bioinformatics
#index1220463
#% 
#!
  
#*Use of genomic DNA control features and predicted operon structure in microarray data analysis: ArrayLeaRNA - a Bayesian approach.
#@Carmen Pin,Mark Reuter
#t2007
#cBMC Bioinformatics
#index1220464
#% 
#!
  
#*Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data.
#@Wei-Sheng Wu,Wen-Hsiung Li,Bor-Sen Chen
#t2007
#cBMC Bioinformatics
#index1220465
#% 
#!
  
#*Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis.
#@Tae-Min Kim,Yeun-Jun Chung,Mun-Gan Rhyu,Myeong Ho Jung
#t2007
#cBMC Bioinformatics
#index1220466
#% 
#!
  
#*Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry.
#@Tobias Kind,Oliver Fiehn
#t2007
#cBMC Bioinformatics
#index1220467
#% 
#!
  
#*Multiple non-collinear TF-map alignments of promoter regions.
#@Enrique Blanco,Roderic Guigó,Xavier Messeguer
#t2007
#cBMC Bioinformatics
#index1220468
#% 
#!
  
#*Ab initio identification of human microRNAs based on structure motifs.
#@Markus Brameier,Carsten Wiuf
#t2007
#cBMC Bioinformatics
#index1220469
#% 
#!
  
#*Local Renyi entropic profiles of DNA sequences.
#@Susana Vinga,Jonas S. Almeida
#t2007
#cBMC Bioinformatics
#index1220470
#% 
#!
  
#*A systematic approach to detecting transcription factors in response to environmental stresses.
#@Li-Hsieh Lin,Hsiao-Ching Lee,Wen-Hsiung Li,Bor-Sen Chen
#t2007
#cBMC Bioinformatics
#index1220471
#% 
#!
  
#*BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips.
#@Ernest Turro,Natalia Bochkina,Anne-Mette K. Hein,Sylvia Richardson
#t2007
#cBMC Bioinformatics
#index1220472
#% 
#!
  
#*Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction.
#@Mette V. Larsen,Claus Lundegaard,Kasper Lamberth,Søren Buus,Ole Lund,Morten Nielsen
#t2007
#cBMC Bioinformatics
#index1220473
#% 
#!
  
#*Predictive modeling of plant messenger RNA polyadenylation sites.
#@Guoli Ji,Jianti Zheng,Yingjia Shen,Xiaohui Wu,Ronghan Jiang,Yun Lin,Johnny C. Loke,Kimberly M. Davis,Greg J. Reese,Qingshun Quinn Li
#t2007
#cBMC Bioinformatics
#index1220474
#% 
#!
  
#*The topology of metabolic isotope labeling networks.
#@Michael Weitzel,Wolfgang Wiechert,Katharina Nöh
#t2007
#cBMC Bioinformatics
#index1220475
#% 
#!
  
#*Analysis of probe level patterns in Affymetrix microarray data.
#@Alexander C. Cambon,Abdelnaby Khalyfa,Nigel G. F. Cooper,Caryn M. Thompson
#t2007
#cBMC Bioinformatics
#index1220476
#% 
#!
  
#*qPIPSA: Relating enzymatic kinetic parameters and interaction fields.
#@Razif R. Gabdoulline,Matthias Stein,Rebecca C. Wade
#t2007
#cBMC Bioinformatics
#index1220477
#% 
#!
  
#*CGKB: an annotation knowledge base for cowpea (.) methylation filtered genomic genespace sequences.
#@Xianfeng Chen,Thomas W. Laudeman,Paul J. Rushton,Thomas A. Spraggins,Michael P. Timko
#t2007
#cBMC Bioinformatics
#index1220478
#% 
#!
  
#*PlnTFDB: an integrative plant transcription factor database.
#@Diego Mauricio Riaño-Pachón,Slobodan Ruzicic,Ingo Dreyer,Bernd Mueller-Roeber
#t2007
#cBMC Bioinformatics
#index1220479
#% 
#!
  
#*Spectral estimation in unevenly sampled space of periodically expressed microarray time series data.
#@Alan Wee-Chung Liew,Jun Xian,Shuanhu Wu,David Keith Smith,Hong Yan
#t2007
#cBMC Bioinformatics
#index1220480
#% 
#!
  
#*Predicting and improving the protein sequence alignment quality by support vector regression.
#@Minho Lee,Chan-seok Jeong,Dongsup Kim
#t2007
#cBMC Bioinformatics
#index1220481
#% 
#!
  
#*Analysis and prediction of antibacterial peptides.
#@Sneh Lata,B. K. Sharma,G. P. S. Raghava
#t2007
#cBMC Bioinformatics
#index1220482
#% 
#!
  
#*A meta-data based method for DNA microarray imputation.
#@Rebecka Jörnsten,Ming Ouyang,Hui-Yu Wang
#t2007
#cBMC Bioinformatics
#index1220483
#% 
#!
  
#*Simcluster: clustering enumeration gene expression data on the simplex space.
#@Ricardo Z. N. Vêncio,Leonardo Varuzza,Carlos A. de B. Pereira,Helena Brentani,Ilya Shmulevich
#t2007
#cBMC Bioinformatics
#index1220484
#% 
#!
  
#*Computational genes: a tool for molecular diagnosis and therapy of aberrant mutational phenotype.
#@Israel Mark Martínez-Pérez,Gong Zhang,Zoya Ignatova,Karl-Heinz Zimmermann
#t2007
#cBMC Bioinformatics
#index1220485
#% 
#!
  
#*Using contextual and lexical features to restructure and validate the classification of biomedical concepts.
#@Jung-Wei Fan,Hua Xu,Carol Friedman
#t2007
#cBMC Bioinformatics
#index1220486
#% 
#!
  
#*Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method.
#@Morten Nielsen,Claus Lundegaard,Ole Lund
#t2007
#cBMC Bioinformatics
#index1220487
#% 
#!
  
#*Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment.
#@Raja Jothi,Teresa M. Przytycka,L. Aravind
#t2007
#cBMC Bioinformatics
#index1220488
#% 
#!
  
#*Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography.
#@Miguel Arenas,David Posada
#t2007
#cBMC Bioinformatics
#index1220489
#% 
#!
  
#*Userscripts for the Life Sciences.
#@Egon L. Willighagen,Noel M. O'Boyle,Harini Gopalakrishnan,Dazhi Jiao,Rajarshi Guha,Christoph Steinbeck,David J. Wild
#t2007
#cBMC Bioinformatics
#index1220490
#% 
#!
  
#*Features generated for computational splice-site prediction correspond to functional elements.
#@Rezarta Islamaj Dogan,Lise Getoor,W. John Wilbur,Stephen M. Mount
#t2007
#cBMC Bioinformatics
#index1220491
#% 
#!
  
#*Extended analysis of benchmark datasets for Agilent two-color microarrays.
#@Kathleen F. Kerr
#t2007
#cBMC Bioinformatics
#index1220492
#% 
#!
  
#*Motif kernel generated by genetic programming improves remote homology and fold detection.
#@Tony Håndstad,Arne J. H. Hestnes,Pål Sætrom
#t2007
#cBMC Bioinformatics
#index1220493
#% 
#!
  
#*Estimating the annotation error rate of curated GO database sequence annotations.
#@Craig E. Jones,Alfred L. Brown,Ute Baumann
#t2007
#cBMC Bioinformatics
#index1220494
#% 
#!
  
#*Dependence of paracentric inversion rate on tract length.
#@Thomas L. York,Richard Durrett,Rasmus Nielsen
#t2007
#cBMC Bioinformatics
#index1220495
#% 
#!
  
#*Accelerated search for biomolecular network models to interpret high-throughput experimental data.
#@Suman Datta,Bahrad A. Sokhansanj
#t2007
#cBMC Bioinformatics
#index1220496
#% 
#!
  
#*A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array.
#@Tianwei Yu,Hui Ye,Wei Sun,Ker-Chau Li,Zugen Chen,Sharoni Jacobs,Dione K. Bailey,David T. Wong,Xiaofeng Zhou
#t2007
#cBMC Bioinformatics
#index1220497
#% 
#!
  
#*Scoring functions and enrichment: a case study on Hsp90.
#@Chrysi Konstantinou-Kirtay,John B. O. Mitchell,James A. Lumley
#t2007
#cBMC Bioinformatics
#index1220498
#% 
#!
  
#*Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of .
#@Gunnar Schramm,Marc Zapatka,Roland Eils,Rainer König
#t2007
#cBMC Bioinformatics
#index1220499
#% 
#!
  
#*Recruitment of rare -grams at functional sites: Is this a mechanism for increasing enzyme specificity?
#@Dror Tobi,Ivet Bahar
#t2007
#cBMC Bioinformatics
#index1220500
#% 
#!
  
#*A general strategy to determine the congruence between a hierarchical and a non-hierarchical classification.
#@Antonio Marco,Ignacio Marín
#t2007
#cBMC Bioinformatics
#index1220501
#% 
#!
  
#*MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs.
#@Mamoru Kato,Tatsuhiko Tsunoda
#t2007
#cBMC Bioinformatics
#index1220502
#% 
#!
  
#*Using expression arrays for copy number detection: an example from E. coli.
#@Dmitriy Skvortsov,Diana Abdueva,Michael E. Stitzer,Steven E. Finkel,Simon Tavaré
#t2007
#cBMC Bioinformatics
#index1220503
#% 
#!
  
#*Design and implementation of a generalized laboratory data model.
#@Michael C. Wendl,Scott Smith,Craig S. Pohl,David J. Dooling,Asif T. Chinwalla,Kevin Crouse,Todd Hepler,Shin Leong,Lynn K. Carmichael,Mike Nhan,Benjamin J. Oberkfell,Elaine R. Mardis,LaDeana W. Hillier,Richard K. Wilson
#t2007
#cBMC Bioinformatics
#index1220504
#% 
#!
  
#*IDconverter and IDClight: Conversion and annotation of gene and protein IDs.
#@Andreu Alibés,Patricio Yankilevich,Andrés Cañada,Ramón Díaz-Uriarte
#t2007
#cBMC Bioinformatics
#index1220505
#% 
#!
  
#*Recursive Cluster Elimination (RCE) for classification and feature selection from gene expression data.
#@Malik Yousef,Segun Jung,Louise C. Showe,Michael K. Showe
#t2007
#cBMC Bioinformatics
#index1220506
#% 
#!
  
#*Annotation and query of tissue microarray data using the NCI Thesaurus.
#@Nigam H. Shah,Daniel L. Rubin,Inigo Espinosa,Kelli Montgomery,Mark A. Musen
#t2007
#cBMC Bioinformatics
#index1220507
#% 
#!
  
#*Permutation test for periodicity in short time series data.
#@Andrey A. Ptitsyn,Sanjin Zvonic,Jeffrey M. Gimble
#t2007
#cBMC Bioinformatics
#index1220508
#% 
#!
  
#*MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data.
#@Eider B. Moore,Andrew V. Poliakov,Peter Lincoln,James F. Brinkley
#t2007
#cBMC Bioinformatics
#index1220509
#% 
#!
  
#*Setting up a large set of protein-ligand PDB complexes for the development and validation of knowledge-based docking algorithms.
#@Luis A. Diago,Persy Morell,Longendri Aguilera,Ernesto Moreno
#t2007
#cBMC Bioinformatics
#index1220510
#% 
#!
  
#*Modeling biochemical transformation processes and information processing with Narrator.
#@Johannes J. Mandel,Hendrik Fuß,Niall M. Palfreyman,Werner Dubitzky
#t2007
#cBMC Bioinformatics
#index1220511
#% 
#!
  
#*Evaluation of 3D-Jury on CASP7 models.
#@László Kaján,Leszek Rychlewski
#t2007
#cBMC Bioinformatics
#index1220512
#% 
#!
  
#*Peptide ligand screening of alpha-synuclein aggregation modulators by panning.
#@Koichi Abe,Natsuki Kobayashi,Koji Sode,Kazunori Ikebukuro
#t2007
#cBMC Bioinformatics
#index1220513
#% 
#!
  
#*Tandem mass spectrometry data quality assessment by self-convolution.
#@Keng Wah Choo,Wai Mun Tham
#t2007
#cBMC Bioinformatics
#index1220514
#% 
#!
  
#*OntologyWidget - a reusable, embeddable widget for easily locating ontology terms.
#@Catherine Beauheim,Farrell Wymore,Michael Nitzberg,Zachariah K. Zachariah,Heng Jin,J. H. Pate Skene,Catherine A. Ball,Gavin Sherlock
#t2007
#cBMC Bioinformatics
#index1220515
#% 
#!
  
#*Quantitative sequence-function relationships in proteins based on gene ontology.
#@Vineet Sangar,Daniel J. Blankenberg,Naomi Altman,Arthur M. Lesk
#t2007
#cBMC Bioinformatics
#index1220516
#% 
#!
  
#*Modeling human cancer-related regulatory modules by GA-RNN hybrid algorithms.
#@Jung-Hsien Chiang,Shih-Yi Chao
#t2007
#cBMC Bioinformatics
#index1220517
#% 
#!
  
#*Least-squares methods for identifying biochemical regulatory networks from noisy measurements.
#@Jongrae Kim,Declan G. Bates,Ian Postlethwaite,Pat Heslop-Harrison,Kwang-Hyun Cho
#t2007
#cBMC Bioinformatics
#index1220518
#% 
#!
  
#*Robust detection and verification of linear relationships to generate metabolic networks using estimates of technical errors.
#@Frank Kose,Jan Budczies,Matthias Holschneider,Oliver Fiehn
#t2007
#cBMC Bioinformatics
#index1220519
#% 
#!
  
#*Artificial neural network models for prediction of intestinal permeability of oligopeptides.
#@Eunkyoung Jung,Junhyoung Kim,Minkyoung Kim,Dong Hyun Jung,Hokyoung Rhee,Jae-Min Shin,Kihang Choi,Sang-Kee Kang,Min-Kook Kim,Cheol-Heui Yun,Yun-Jaie Choi,Seung-Hoon Choi
#t2007
#cBMC Bioinformatics
#index1220520
#% 
#!
  
#*Incremental and unifying modelling formalism for biological interaction networks.
#@Anastasia Yartseva,Hanna Klaudel,Raymond R. Devillers,François Képès
#t2007
#cBMC Bioinformatics
#index1220521
#% 
#!
  
#*Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips.
#@Maria A. Stalteri,Andrew P. Harrison
#t2007
#cBMC Bioinformatics
#index1220522
#% 
#!
  
#*A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures.
#@Konstantin Yu Popadin,Leila A. Mamirova,Fyodor A. Kondrashov
#t2007
#cBMC Bioinformatics
#index1220523
#% 
#!
  
#*ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites.
#@Jan Hummel,Michaela Niemann,Stefanie Wienkoop,Waltraud X. Schulze,Dirk Steinhauser,Joachim Selbig,Dirk Walther,Wolfram Weckwerth
#t2007
#cBMC Bioinformatics
#index1220524
#% 
#!
  
#*The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats.
#@Ibtissem Grissa,Gilles Vergnaud,Christine Pourcel
#t2007
#cBMC Bioinformatics
#index1220525
#% 
#!
  
#*Discovering structural motifs using a structural alphabet: Application to magnesium-binding sites.
#@Minko Dudev,Carmay Lim
#t2007
#cBMC Bioinformatics
#index1220526
#% 
#!
  
#*h-Profile plots for the discovery and exploration of patterns in gene expression data with an application to time course data.
#@Yvonne E. Pittelkow,Susan R. Wilson
#t2007
#cBMC Bioinformatics
#index1220527
#% 
#!
  
#*SABERTOOTH: protein structural alignment based on a vectorial structure representation.
#@Florian Teichert,Ugo Bastolla,Markus Porto
#t2007
#cBMC Bioinformatics
#index1220528
#% 
#!
  
#*Computation of significance scores of unweighted Gene Set Enrichment Analyses.
#@Andreas Keller,Christina Backes,Hans-Peter Lenhof
#t2007
#cBMC Bioinformatics
#index1220529
#% 
#!
  
#*The reactive metabolite target protein database (TPDB) - a web-accessible resource.
#@Robert P. Hanzlik,Yakov M. Koen,Bhargav Theertham,Yinghua Dong,Jianwen Fang
#t2007
#cBMC Bioinformatics
#index1220530
#% 
#!
  
#*Estimation of the number of extreme pathways for metabolic networks.
#@Matthew Yeung,Ines Thiele,Bernhard O. Palsson
#t2007
#cBMC Bioinformatics
#index1220531
#% 
#!
  
#*BranchClust: a phylogenetic algorithm for selecting gene families.
#@Maria S. Poptsova,J. Peter Gogarten
#t2007
#cBMC Bioinformatics
#index1220532
#% 
#!
  
#*Portraits of breast cancer progression.
#@Gul S. Dalgin,Gabriela Alexe,Daniel Scanfeld,Pablo Tamayo,Jill P. Mesirov,Shridar Ganesan,Charles DeLisi,Gyan Bhanot
#t2007
#cBMC Bioinformatics
#index1220533
#% 
#!
  
#*InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes.
#@Jingchun Sun,Yan Sun,Guohui Ding,Qi Liu,Chuan Wang,Youyu He,Tieliu Shi,Yixue Li,Zhongming Zhao
#t2007
#cBMC Bioinformatics
#index1220534
#% 
#!
  
#*Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays.
#@Jun Lu,Joseph C. Lee,Marc L. Salit,Margaret C. Cam
#t2007
#cBMC Bioinformatics
#index1220535
#% 
#!
  
#*Lower bounds on multiple sequence alignment using exact 3-way alignment.
#@Charles J. Colbourn,Sudhir Kumar
#t2007
#cBMC Bioinformatics
#index1220536
#% 
#!
  
#*CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats.
#@Charles Bland,Teresa L. Ramsey,Fareedah Sabree,Micheal Lowe,Kyndall Brown,Nikos Kyrpides,Philip Hugenholtz
#t2007
#cBMC Bioinformatics
#index1220537
#% 
#!
  
#*Identification of discriminative characteristics for clusters from biologic data with InforBIO software.
#@Naoto Tanaka,Masataka Uchino,Satoru Miyazaki,Hideaki Sugawara
#t2007
#cBMC Bioinformatics
#index1220538
#% 
#!
  
#*Protein structural similarity search by Ramachandran codes.
#@Wei-Cheng Lo,Po-Jung Huang,Chih-Hung Chang,Ping-Chiang Lyu
#t2007
#cBMC Bioinformatics
#index1220539
#% 
#!
  
#*Improved human disease candidate gene prioritization using mouse phenotype.
#@Jing Chen,Huan Xu,Bruce J. Aronow,Anil G. Jegga
#t2007
#cBMC Bioinformatics
#index1220540
#% 
#!
  
#*The utility of MAS5 expression summary and detection call algorithms.
#@Stuart D. Pepper,Emma K. Saunders,Laura E. Edwards,Claire L. Wilson,Crispin J. Miller
#t2007
#cBMC Bioinformatics
#index1220541
#% 
#!
  
#*CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes.
#@Gert Sclep,Joke Allemeersch,Robin Liechti,Björn De Meyer,Jim Beynon,Rishikesh Bhalerao,Yves Moreau,Wilfried Nietfeld,Jean-Pierre Renou,Philippe Reymond,Martin T. R. Kuiper,Pierre Hilson
#t2007
#cBMC Bioinformatics
#index1220542
#% 
#!
  
#*Normalization and experimental design for ChIP-chip data.
#@Shouyong Peng,Artyom A. Alekseyenko,Erica Larschan,Mitzi I. Kuroda,Peter J. Park
#t2007
#cBMC Bioinformatics
#index1220543
#% 
#!
  
#*Classification of microarray data using gene networks.
#@Franck Rapaport,Andrei Zinovyev,Marie Dutreix,Emmanuel Barillot,Jean-Philippe Vert
#t2007
#cBMC Bioinformatics
#index1220544
#% 
#!
  
#*3'-UTR SIRF: A database for identifying clusters of short interspersed repeats in 3' untranslated regions.
#@Benjamin B. Andken,In Lim,Gary Benson,John J. Vincent,Matthew T. Ferenc,Bianca Heinrich,Larissa A. Jarzylo,Heng-Ye Man,James O. Deshler
#t2007
#cBMC Bioinformatics
#index1220545
#% 
#!
  
#*Comparison of protein structures by growing neighborhood alignments.
#@Sourangshu Bhattacharya,Chiranjib Bhattacharyya,Nagasuma Chandra
#t2007
#cBMC Bioinformatics
#index1220546
#% 
#!
  
#*A novel approach to detect hot-spots in large-scale multivariate data.
#@Jianhua Wu,Keith M. Kendrick,Jianfeng Feng
#t2007
#cBMC Bioinformatics
#index1220547
#% 
#!
  
#*Automatic reconstruction of a bacterial regulatory network using Natural Language Processing.
#@Carlos Rodríguez Penagos,Heladia Salgado,Irma Martínez-Flores,Julio Collado-Vides
#t2007
#cBMC Bioinformatics
#index1220548
#% 
#!
  
#*Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana.
#@Henning Redestig,Daniel Weicht,Joachim Selbig,Matthew A. Hannah
#t2007
#cBMC Bioinformatics
#index1220549
#% 
#!
  
#*Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy.
#@Guangan Hu,Manuel Llinás,Jingguang Li,Peter Rainer Preiser,Zbynek Bozdech
#t2007
#cBMC Bioinformatics
#index1220550
#% 
#!
  
#*WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.
#@Giulio Pavesi,Federico Zambelli,Graziano Pesole
#t2007
#cBMC Bioinformatics
#index1220551
#% 
#!
  
#*Predicting gene ontology functions from protein's regional surface structures.
#@Zhi-Ping Liu,Ling-Yun Wu,Yong Wang,Luonan Chen,Xiang-Sun Zhang
#t2007
#cBMC Bioinformatics
#index1220552
#% 
#!
  
#*Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data.
#@Hui Yu,Feng Wang,Kang Tu,Lu Xie,Yuan-Yuan Li,Yi-Xue Li
#t2007
#cBMC Bioinformatics
#index1220553
#% 
#!
  
#*ISHAPE: new rapid and accurate software for haplotyping.
#@Olivier Delaneau,Cédric Coulonges,Pierre-Yves Boëlle,George Nelson,Jean-Louis Spadoni,Jean-François Zagury
#t2007
#cBMC Bioinformatics
#index1220554
#% 
#!
  
#*Context based mixture model for cell phase identification in automated fluorescence microscopy.
#@Meng Wang,Xiaobo Zhou,Randy W. King,Stephen T. C. Wong
#t2007
#cBMC Bioinformatics
#index1220555
#% 
#!
  
#*Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Nasymporter family.
#@Dennis R. Livesay,Patrick D. Kidd,Sepehr Eskandari,Usman Roshan
#t2007
#cBMC Bioinformatics
#index1220556
#% 
#!
  
#*MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes.
#@Huaiqiu Zhu,Gang-Qing Hu,Yi-Fan Yang,Jin Wang,Zhen-Su She
#t2007
#cBMC Bioinformatics
#index1220557
#% 
#!
  
#*Discarding duplicate ditags in LongSAGE analysis may introduce significant error.
#@Jeppe Emmersen,Anna M. Heidenblut,Annabeth Laursen Høgh,Stephan A. Hahn,Karen G. Welinder,Kåre L. Nielsen
#t2007
#cBMC Bioinformatics
#index1220558
#% 
#!
  
#*Linking microarray reporters with protein functions.
#@Stan Gaj,Arie van Erk,Rachel I. M. van Haaften,Chris T. A. Evelo
#t2007
#cBMC Bioinformatics
#index1220559
#% 
#!
  
#*Supervised group Lasso with applications to microarray data analysis.
#@Shuangge Ma,Xiao Song,Jian Huang
#t2007
#cBMC Bioinformatics
#index1220560
#% 
#!
  
#*Inference of miRNA targets using evolutionary conservation and pathway analysis.
#@Dimos Gaidatzis,Erik van Nimwegen,Jean Hausser,Mihaela Zavolan
#t2007
#cBMC Bioinformatics
#index1220561
#% 
#!
  
#*Bias in random forest variable importance measures: Illustrations, sources and a solution.
#@Carolin Strobl,Anne-Laure Boulesteix,Achim Zeileis,Torsten Hothorn
#t2007
#cBMC Bioinformatics
#index1220562
#% 
#!
  
#*An efficient pseudomedian filter for tiling microrrays.
#@Thomas E. Royce,Nicholas Carriero,Mark B. Gerstein
#t2007
#cBMC Bioinformatics
#index1220563
#% 
#!
  
#*Natural computation meta-heuristics for the in silico optimization of microbial strains.
#@Miguel Rocha,Paulo Maia,Rui Mendes,José P. Pinto,Eugénio C. Ferreira,Jens Nielsen,Kiran Raosaheb Patil,Isabel Rocha
#t2008
#cBMC Bioinformatics
#index1220564
#% 
#!
  
#*Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm.
#@Jeremy D. DeBarry,Renyi Liu,Jeffrey Bennetzen
#t2008
#cBMC Bioinformatics
#index1220565
#% 
#!
  
#*Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation.
#@Jakub Orzechowski Westholm,Feifei Xu,Hans Ronne,Henryk Jan Komorowski
#t2008
#cBMC Bioinformatics
#index1220566
#% 
#!
  
#*Methodology capture: discriminating between the "best" and the rest of community practice.
#@James M. Eales,John W. Pinney,Robert D. Stevens,David L. Robertson
#t2008
#cBMC Bioinformatics
#index1220567
#% 
#!
  
#*MeInfoText: associated gene methylation and cancer information from text mining.
#@Yu-Ching Fang,Hsuan-Cheng Huang,Hsueh-Fen Juan
#t2008
#cBMC Bioinformatics
#index1220568
#% 
#!
  
#*FUNYBASE: a FUNgal phYlogenomic dataBASE.
#@Sylvain Marthey,Gabriela Aguileta,François Rodolphe,Annie Gendrault,Tatiana Giraud,Elisabeth Fournier,Manuela Lopez-Villavicencio,Angélique Gautier,Marc-Henri Lebrun,Hélène Chiapello
#t2008
#cBMC Bioinformatics
#index1220569
#% 
#!
  
#*Assessment of protein set coherence using functional annotations.
#@Monica Chagoyen,José María Carazo,Alberto D. Pascual-Montano
#t2008
#cBMC Bioinformatics
#index1220570
#% 
#!
  
#*Grammar-based distance in progressive multiple sequence alignment.
#@David J. Russell,Hasan H. Otu,Khalid Sayood
#t2008
#cBMC Bioinformatics
#index1220571
#% 
#!
  
#*R/parallel - speeding up bioinformatics analysis with R.
#@Gonzalo Vera,Ritsert C. Jansen,Remo Suppi
#t2008
#cBMC Bioinformatics
#index1220572
#% 
#!
  
#*SSMap: A new UniProt-PDB mapping resource for the curation of structural-related information in the UniProt/Swiss-Prot Knowledgebase.
#@Fabrice P. A. David,Yum Lina Yip
#t2008
#cBMC Bioinformatics
#index1220573
#% 
#!
  
#*Prediction of regulatory elements in mammalian genomes using chromatin signatures.
#@Kyoung-Jae Won,Iouri Chepelev,Bing Ren,Wei Wang
#t2008
#cBMC Bioinformatics
#index1220574
#% 
#!
  
#*AWclust: point-and-click software for non-parametric population structure analysis.
#@Xiaoyi Gao,Joshua D. Starmer
#t2008
#cBMC Bioinformatics
#index1220575
#% 
#!
  
#*Comparative optimism in models involving both classical clinical and gene expression information.
#@Caroline Truntzer,Delphine Maucort-Boulch,Pascal Roy
#t2008
#cBMC Bioinformatics
#index1220576
#% 
#!
  
#*TiGER: A database for tissue-specific gene expression and regulation.
#@Xiong Liu,Xueping Yu,Donald J. Zack,Heng Zhu,Jiang Qian
#t2008
#cBMC Bioinformatics
#index1220577
#% 
#!
  
#*A new real-time PCR method to overcome significant quantitative inaccuracy due to slight amplification inhibition.
#@Michele Guescini,Davide Sisti,Marco B. L. Rocchi,Laura Stocchi,Vilberto Stocchi
#t2008
#cBMC Bioinformatics
#index1220578
#% 
#!
  
#*Prediction of TF target sites based on atomistic models of protein-DNA complexes.
#@Vladimir Espinosa Angarica,Abel González Pérez,Ana Tereza R. Vasconcelos,Julio Collado-Vides,Bruno Contreras-Moreira
#t2008
#cBMC Bioinformatics
#index1220579
#% 
#!
  
#*Empirical Bayes models for multiple probe type microarrays at the probe level.
#@Magnus Åstrand,Petter Mostad,Mats Rudemo
#t2008
#cBMC Bioinformatics
#index1220580
#% 
#!
  
#*LC-MSsim - a simulation software for liquid chromatography mass spectrometry data.
#@Ole Schulz-Trieglaff,Nico Pfeifer,Clemens Gröpl,Oliver Kohlbacher,Knut Reinert
#t2008
#cBMC Bioinformatics
#index1220581
#% 
#!
  
#*Triad pattern algorithm for predicting strong promoter candidates in bacterial genomes.
#@Michael Dekhtyar,Amelie Morin,Vehary Sakanyan
#t2008
#cBMC Bioinformatics
#index1220582
#% 
#!
  
#*A dynamic Bayesian network approach to protein secondary structure prediction.
#@Xin-Qiu Yao,Huaiqiu Zhu,Zhen-Su She
#t2008
#cBMC Bioinformatics
#index1220583
#% 
#!
  
#*EST Express: PHP/MySQL based automated annotation of ESTs from expression libraries.
#@Robin P. Smith,William J. Buchser,Marcus B. Lemmon,Jose R. Pardinas,John L. Bixby,Vance P. Lemmon
#t2008
#cBMC Bioinformatics
#index1220584
#% 
#!
  
#*SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool.
#@Zhike Zi,Yanan Zheng,Ann E. Rundell,Edda Klipp
#t2008
#cBMC Bioinformatics
#index1220585
#% 
#!
  
#*Barcodes for genomes and applications.
#@Fengfeng Zhou,Victor Olman,Ying Xu
#t2008
#cBMC Bioinformatics
#index1220586
#% 
#!
  
#*BioSAVE: Display of scored annotation within a sequence context.
#@Richard F. Pollock,Boris Adryan
#t2008
#cBMC Bioinformatics
#index1220587
#% 
#!
  
#*Combining Shapley value and statistics to the analysis of gene expression data in children exposed to air pollution.
#@Stefano Moretti,Danitsja van Leeuwen,Hans Gmuender,Stefano Bonassi,Joost van Delft,Jos Kleinjans,Fioravante Patrone,Domenico Franco Merlo
#t2008
#cBMC Bioinformatics
#index1220588
#% 
#!
  
#*Proteochemometric modeling of HIV protease susceptibility.
#@Maris Lapinsh,Martin Eklund,Ola Spjuth,Peteris Prusis,Jarl E. S. Wikberg
#t2008
#cBMC Bioinformatics
#index1220589
#% 
#!
  
#*Neutral network sizes of biological RNA molecules can be computed and are not atypically small.
#@Thomas Jörg,Olivier C. Martin,Andreas Wagner
#t2008
#cBMC Bioinformatics
#index1220590
#% 
#!
  
#*Nonparametric relevance-shifted multiple testing procedures for the analysis of high-dimensional multivariate data with small sample sizes.
#@Cornelia Frömke,Ludwig A. Hothorn,Siegfried Kropf
#t2008
#cBMC Bioinformatics
#index1220591
#% 
#!
  
#*A novel method for high accuracy sumoylation site prediction from protein sequences.
#@Jialin Xu,Yun He,Boqin Qiang,Jiangang Yuan,Xiaozhong Peng,Xian-Ming Pan
#t2008
#cBMC Bioinformatics
#index1220592
#% 
#!
  
#*easyExon - A Java-based GUI tool for processing and visualization of Affymetrix exon array data.
#@Ting-Yu Chang,Yin-Yi Li,Chih-Hung Jen,Tsun-Po Yang,Chi-Hung Lin,Ming-Ta Hsu,Hsei-Wei Wang
#t2008
#cBMC Bioinformatics
#index1220593
#% 
#!
  
#*Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics.
#@Wiebke Timm,Alexandra Scherbart,Sebastian Böcker,Oliver Kohlbacher,Tim W. Nattkemper
#t2008
#cBMC Bioinformatics
#index1220594
#% 
#!
  
#*EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management.
#@Geraint Barton,J. C. Abbott,Norie Chiba,D. W. Huang,Y. Huang,Marko Krznaric,J. Mack-Smith,A. Saleem,B. T. Sherman,B. Tiwari,Chris Tomlinson,Timothy J. Aitman,John Darlington,Laurence Game,Michael J. E. Sternberg,S. A. Butcher
#t2008
#cBMC Bioinformatics
#index1220595
#% 
#!
  
#*Determining significance of pairwise co-occurrences of events in bursty sequences.
#@Niina Haiminen,Heikki Mannila,Evimaria Terzi
#t2008
#cBMC Bioinformatics
#index1220596
#% 
#!
  
#*LOMA: A fast method to generate efficient tagged-random primers despite amplification bias of random PCR on pathogens.
#@Wah-Heng Lee,Christopher W. Wong,Wan Yee Leong,Lance D. Miller,Wing-Kin Sung
#t2008
#cBMC Bioinformatics
#index1220597
#% 
#!
  
#*Analyzing M-CSF dependent monocyte/macrophage differentiation: Expression modes and meta-modes derived from an independent component analysis.
#@Dominik Lutter,Peter Ugocsai,Margot Grandl,Evelyn Orso,Fabian J. Theis,Elmar Wolfgang Lang,Gerd Schmitz
#t2008
#cBMC Bioinformatics
#index1220598
#% 
#!
  
#*Extraction of semantic biomedical relations from text using conditional random fields.
#@Markus Bundschus,Mathäus Dejori,Martin Stetter,Volker Tresp,Hans-Peter Kriegel
#t2008
#cBMC Bioinformatics
#index1220599
#% 
#!
  
#*RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure.
#@Qi Liu,Yu Yang,Chun Chen,Jiajun Bu,Yin Zhang,Xiuzi Ye
#t2008
#cBMC Bioinformatics
#index1220600
#% 
#!
  
#*Designing multiple degenerate primers via consecutive pairwise alignments.
#@Hamed Shateri Najafabadi,Noorossadat Torabi,Mahmood Chamankhah
#t2008
#cBMC Bioinformatics
#index1220601
#% 
#!
  
#*Prediction of glycosylation sites using random forests.
#@Stephen E. Hamby,Jonathan D. Hirst
#t2008
#cBMC Bioinformatics
#index1220602
#% 
#!
  
#*MetaFIND: A feature analysis tool for metabolomics data.
#@Kenneth Bryan,Lorraine Brennan,Padraig Cunningham
#t2008
#cBMC Bioinformatics
#index1220603
#% 
#!
  
#*XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data.
#@Daniel N. Frank
#t2008
#cBMC Bioinformatics
#index1220604
#% 
#!
  
#*Identifying a few foot-and-mouth disease virus signature nucleotide strings for computational genotyping.
#@Guohui Lin,Zhipeng Cai,Junfeng Wu,Xiu-Feng Wan,Lizhe Xu,Randy Goebel
#t2008
#cBMC Bioinformatics
#index1220605
#% 
#!
  
#*Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks.
#@Iaroslav Ispolatov,Sergei Maslov
#t2008
#cBMC Bioinformatics
#index1220606
#% 
#!
  
#*New resampling method for evaluating stability of clusters.
#@Irina Gana Dresen,Tanja Boes,Johannes Hüsing,Markus Neuhäuser,Karl-Heinz Jöckel
#t2008
#cBMC Bioinformatics
#index1220607
#% 
#!
  
#*A novel series of compositionally biased substitution matrices for comparing proteins.
#@Kevin Brick,Elisabetta Pizzi
#t2008
#cBMC Bioinformatics
#index1220608
#% 
#!
  
#*DNAAlignEditor: DNA alignment editor tool.
#@Hector Sanchez-Villeda,Steven G. Schroeder,Sherry Flint-Garcia,Katherine E. Guill,Masanori Yamasaki,Michael D. McMullen
#t2008
#cBMC Bioinformatics
#index1220609
#% 
#!
  
#*The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage.
#@Hamilton Ganesan,Anna S. Rakitianskaia,Colin F. Davenport,Burkhard Tümmler,Oleg N. Reva
#t2008
#cBMC Bioinformatics
#index1220610
#% 
#!
  
#*StAR: a simple tool for the statistical comparison of ROC curves.
#@Ismael A. Vergara,Tomás Norambuena,Evandro Ferrada,Alex W. Slater,Francisco Melo
#t2008
#cBMC Bioinformatics
#index1220611
#% 
#!
  
#*LocateP: Genome-scale subcellular-location predictor for bacterial proteins.
#@Miaomiao Zhou,Jos Boekhorst,Christof Francke,Roland J. Siezen
#t2008
#cBMC Bioinformatics
#index1220612
#% 
#!
  
#*VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays.
#@Hans A. Kestler,André Müller,Johann M. Kraus,Malte Buchholz,Thomas M. Gress,Hongfang Liu,David W. Kane,Barry Zeeberg,John N. Weinstein
#t2008
#cBMC Bioinformatics
#index1220613
#% 
#!
  
#*VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens.
#@Aarti Garg,Dinesh Gupta
#t2008
#cBMC Bioinformatics
#index1220614
#% 
#!
  
#*Computational detection of significant variation in binding affinity across two sets of sequences with application to the analysis of replication origins in yeast.
#@Uri Keich,Hong Gao,Jeffrey S. Garretson,Anand Bhaskar,Ivan Liachko,Justin Donato,Bik K. Tye
#t2008
#cBMC Bioinformatics
#index1220615
#% 
#!
  
#*EzArray: A web-based highly automated Affymetrix expression array data management and analysis system.
#@Yuerong Zhu,Yuelin Zhu,Wei Xu
#t2008
#cBMC Bioinformatics
#index1220616
#% 
#!
  
#*A Population Proportion approach for ranking differentially expressed genes.
#@Mugdha Gadgil
#t2008
#cBMC Bioinformatics
#index1220617
#% 
#!
  
#*Local conservation scores without a priori assumptions on neutral substitution rates.
#@Janis Dingel,Pavol Hanus,Niccolò Leonardi,Joachim Hagenauer,Jürgen Zech,Jakob C. Mueller
#t2008
#cBMC Bioinformatics
#index1220618
#% 
#!
  
#*SNPFile - A software library and file format for large scale association mapping and population genetics studies.
#@Jesper Nielsen,Thomas Mailund
#t2008
#cBMC Bioinformatics
#index1220619
#% 
#!
  
#*Missing value imputation for microarray gene expression data using histone acetylation information.
#@Qian Xiang,Xianhua Dai,Yangyang Deng,Caisheng He,Jiang Wang,Jihua Feng,Zhiming Dai
#t2008
#cBMC Bioinformatics
#index1220620
#% 
#!
  
#*AMMOS: Automated Molecular Mechanics Optimization tool for Screening.
#@Tania Pencheva,David Lagorce,Ilza Pajeva,Bruno O. Villoutreix,Maria A. Miteva
#t2008
#cBMC Bioinformatics
#index1220621
#% 
#!
  
#*ConStruct: Improved construction of RNA consensus structures.
#@Andreas Wilm,Kornelia Linnenbrink,Gerhard Steger
#t2008
#cBMC Bioinformatics
#index1220622
#% 
#!
  
#*Discrimination of outer membrane proteins with improved performance.
#@Changhui Yan,Jing Hu,Yingfeng Wang
#t2008
#cBMC Bioinformatics
#index1220623
#% 
#!
  
#*Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands.
#@Wei Dai,Jens M. Teodoridis,Janet Graham,Constanze Zeller,Tim Hui-Ming Huang,Pearlly Yan,J. Keith Vass,Robert Brown,Jim Paul
#t2008
#cBMC Bioinformatics
#index1220624
#% 
#!
  
#*MiMiR - an integrated platform for microarray data sharing, mining and analysis.
#@Chris Tomlinson,Manjula Thimma,Stelios Alexandrakis,Tito Castillo,Jayne L. Dennis,Anthony Brooks,Thomas Bradley,Carly Turnbull,Ekaterini Blaveri,Geraint Barton,Norie Chiba,Klio Maratou,Pat Soutter,Timothy J. Aitman,Laurence Game
#t2008
#cBMC Bioinformatics
#index1220625
#% 
#!
  
#*Major copy proportion analysis of tumor samples using SNP arrays.
#@Cheng Li,Rameen Beroukhim,Barbara A. Weir,Wendy Winckler,Levi A. Garraway,William R. Sellers,Matthew Meyerson
#t2008
#cBMC Bioinformatics
#index1220626
#% 
#!
  
#*Missing value imputation improves clustering and interpretation of gene expression microarray data.
#@Johannes Tuikkala,Laura Elo,Olli Nevalainen,Tero Aittokallio
#t2008
#cBMC Bioinformatics
#index1220627
#% 
#!
  
#*Pathological rate matrices: from primates to pathogens.
#@Harold W. Schranz,Von Bing Yap,Simon Easteal,Rob Knight,Gavin A. Huttley
#t2008
#cBMC Bioinformatics
#index1220628
#% 
#!
  
#*MetWAMer: eukaryotic translation initiation site prediction.
#@Michael E. Sparks,Volker Brendel
#t2008
#cBMC Bioinformatics
#index1220629
#% 
#!
  
#*Defining functional distances over Gene Ontology.
#@Angela del Pozo,Florencio Pazos,Alfonso Valencia
#t2008
#cBMC Bioinformatics
#index1220630
#% 
#!
  
#*SciDBMaker: new software for computer-aided design of specialized biological databases.
#@Riadh Hammami,Abdelmajid Zouhir,Karim Naghmouchi,Jeannette Ben Hamida,Ismail Fliss
#t2008
#cBMC Bioinformatics
#index1220631
#% 
#!
  
#*- integration of open-access carbohydrate structure databases.
#@René Ranzinger,Stephan Herget,Thomas Wetter,Claus-Wilhelm von der Lieth
#t2008
#cBMC Bioinformatics
#index1220632
#% 
#!
  
#*VisualRepbase: an interface for the study of occurrences of transposable element families.
#@Sébastien Tempel,Matthew Jurka,Jerzy Jurka
#t2008
#cBMC Bioinformatics
#index1220633
#% 
#!
  
#*Bayesian models and meta analysis for multiple tissue gene expression data following corticosteroid administration.
#@Yulan Liang,Arpad Kelemen
#t2008
#cBMC Bioinformatics
#index1220634
#% 
#!
  
#*Improving the prediction accuracy in classification using the combined data sets by ranks of gene expressions.
#@Ki-Yeol Kim,Dong Hyuk Ki,Hei-Cheul Jeung,Hyun Cheol Chung,Sun Young Rha
#t2008
#cBMC Bioinformatics
#index1220635
#% 
#!
  
#*A machine learning approach to explore the spectra intensity pattern of peptides using tandem mass spectrometry data.
#@Cong Zhou,Lucas D. Bowler,Jianfeng Feng
#t2008
#cBMC Bioinformatics
#index1220636
#% 
#!
  
#*ElliPro: a new structure-based tool for the prediction of antibody epitopes.
#@Julia V. Ponomarenko,Huynh-Hoa Bui,Wei Li,Nicholas Fusseder,Philip E. Bourne,Alessandro Sette,Björn Peters
#t2008
#cBMC Bioinformatics
#index1220637
#% 
#!
  
#*BatchPrimer3: A high throughput web application for PCR and sequencing primer design.
#@Frank M. You,Naxin Huo,Yong Qiang Gu,Ming-Cheng Luo,Yaqin Ma,Dave Hane,Gerard R. Lazo,Jan Dvorak,Olin D. Anderson
#t2008
#cBMC Bioinformatics
#index1220638
#% 
#!
  
#*iRefIndex: A consolidated protein interaction database with provenance.
#@Sabry Razick,George Magklaras,Ian M. Donaldson
#t2008
#cBMC Bioinformatics
#index1220639
#% 
#!
  
#*Meta-analysis of breast cancer microarray studies in conjunction with conserved -elements suggest patterns for coordinate regulation.
#@David D. Smith,Pål Sætrom,Ola R. Snøve Jr.,Cathryn Lundberg,Guillermo E. Rivas,Carlotta Glackin,Garrett P. Larson
#t2008
#cBMC Bioinformatics
#index1220640
#% 
#!
  
#*A new protein linear motif benchmark for multiple sequence alignment software.
#@Emmanuel Perrodou,Claudia Chica,Olivier Poch,Toby J. Gibson,Julie Dawn Thompson
#t2008
#cBMC Bioinformatics
#index1220641
#% 
#!
  
#*An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast.
#@Akito Taneda
#t2008
#cBMC Bioinformatics
#index1220642
#% 
#!
  
#*SODa: An Mn/Fe superoxide dismutase prediction and design server.
#@Jean Marc Kwasigroch,René Wintjens,Dimitri Gilis,Marianne Rooman
#t2008
#cBMC Bioinformatics
#index1220643
#% 
#!
  
#*GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments.
#@Andreas Keller,Christina Backes,Maher Al-Awadhi,Andreas Gerasch,Jan Küntzer,Oliver Kohlbacher,Michael Kaufmann,Hans-Peter Lenhof
#t2008
#cBMC Bioinformatics
#index1220644
#% 
#!
  
#*TOBFAC: the database of tobacco transcription factors.
#@Paul J. Rushton,Marta T. Bokowiec,Thomas W. Laudeman,Jennifer F. Brannock,Xianfeng Chen,Michael P. Timko
#t2008
#cBMC Bioinformatics
#index1220645
#% 
#!
  
#*Discovering functional interaction patterns in protein-protein interaction networks.
#@Mehmet E. Turanalp,Tolga Can
#t2008
#cBMC Bioinformatics
#index1220646
#% 
#!
  
#*SPIKE - a database, visualization and analysis tool of cellular signaling pathways.
#@Ran Elkon,Rita Vesterman,Nira Amit,Igor Ulitsky,Idan Zohar,Mali Weisz,Gilad Mass,Nir Orlev,Giora Sternberg,Ran Blekhman,Jackie Assa,Yosef Shiloh,Ron Shamir
#t2008
#cBMC Bioinformatics
#index1220647
#% 
#!
  
#*Combining transcriptional datasets using the generalized singular value decomposition.
#@Andreas W. Schreiber,Neil J. Shirley,Rachel A. Burton,Geoffrey B. Fincher
#t2008
#cBMC Bioinformatics
#index1220648
#% 
#!
  
#*Investigating selection on viruses: a statistical alignment approach.
#@Saskia de Groot,Thomas Mailund,Gerton Lunter,Jotun Hein
#t2008
#cBMC Bioinformatics
#index1220649
#% 
#!
  
#*Information transfer in signaling pathways: A study using coupled simulated and experimental data.
#@Jürgen Pahle,Anne K. Green,C. Jane Dixon,Ursula Kummer
#t2008
#cBMC Bioinformatics
#index1220650
#% 
#!
  
#*Protein contact order prediction from primary sequences.
#@Yi Shi,Jianjun Zhou,David Arndt,David S. Wishart,Guohui Lin
#t2008
#cBMC Bioinformatics
#index1220651
#% 
#!
  
#*Stability analysis of mixtures of mutagenetic trees.
#@Jasmina Bogojeska,Thomas Lengauer,Jörg Rahnenführer
#t2008
#cBMC Bioinformatics
#index1220652
#% 
#!
  
#*BibGlimpse: The case for a light-weight reprint manager in distributed literature research.
#@Thomas Tüchler,Golda Velez,Alexandra Graf,David P. Kreil
#t2008
#cBMC Bioinformatics
#index1220653
#% 
#!
  
#*Developing and validating predictive decision tree models from mining chemical structural fingerprints and high-throughput screening data in PubChem.
#@Lianyi Han,Yanli Wang,Stephen H. Bryant
#t2008
#cBMC Bioinformatics
#index1220654
#% 
#!
  
#*Functional discrimination of membrane proteins using machine learning techniques.
#@M. Michael Gromiha,Yukimitsu Yabuki
#t2008
#cBMC Bioinformatics
#index1220655
#% 
#!
  
#*Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data.
#@Wouter Meuleman,Judith Y. M. N. Engwegen,Marie-Christine W. Gast,Jos H. Beijnen,Marcel J. T. Reinders,Lodewyk F. A. Wessels
#t2008
#cBMC Bioinformatics
#index1220656
#% 
#!
  
#*Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites.
#@Jill L. Wegrzyn,Thomas M. Drudge,Faramarz Valafar,Vivian Hook
#t2008
#cBMC Bioinformatics
#index1220657
#% 
#!
  
#*annot8r: GO, EC and KEGG annotation of EST datasets.
#@Ralf Schmid,Mark L. Blaxter
#t2008
#cBMC Bioinformatics
#index1220658
#% 
#!
  
#*CompMoby: Comparative MobyDick for detection of cis-regulatory motifs.
#@Christina Chaivorapol,Collin Melton,Grace Wei,Ru-Fang Yeh,Miguel Ramalho-Santos,Robert Blelloch,Hao Li
#t2008
#cBMC Bioinformatics
#index1220659
#% 
#!
  
#*Inferring the role of transcription factors in regulatory networks.
#@Philippe Veber,Carito Guziolowski,Michel Le Borgne,Ovidiu Radulescu,Anne Siegel
#t2008
#cBMC Bioinformatics
#index1220660
#% 
#!
  
#*Visualizing and clustering high throughput sub-cellular localization imaging.
#@Nicholas A. Hamilton,Rohan D. Teasdale
#t2008
#cBMC Bioinformatics
#index1220661
#% 
#!
  
#*GBParsy: A GenBank flatfile parser library with high speed.
#@Tae-Ho Lee,Yeon-Ki Kim,Baek Hie Nahm
#t2008
#cBMC Bioinformatics
#index1220662
#% 
#!
  
#*Studying the functional conservation of cis-regulatory modules and their transcriptional output.
#@Denis C. Bauer,Timothy L. Bailey
#t2008
#cBMC Bioinformatics
#index1220663
#% 
#!
  
#*Merging microarray data from separate breast cancer studies provides a robust prognostic test.
#@Lei Xu,Aik Choon Tan,Raimond L. Winslow,Donald Geman
#t2008
#cBMC Bioinformatics
#index1220664
#% 
#!
  
#*Towards a lightweight generic computational grid framework for biological research.
#@Mark D. Halling-Brown,David S. Moss,Adrian J. Shepherd
#t2008
#cBMC Bioinformatics
#index1220665
#% 
#!
  
#*Combining classifiers for improved classification of proteins from sequence or structure.
#@Iain Melvin,Jason Weston,Christina S. Leslie,William Stafford Noble
#t2008
#cBMC Bioinformatics
#index1220666
#% 
#!
  
#*A novel representation of RNA secondary structure based on element-contact graphs.
#@Wenjie Shu,Xiaochen Bo,Zhiqiang Zheng,Shengqi Wang
#t2008
#cBMC Bioinformatics
#index1220667
#% 
#!
  
#*Use of normalization methods for analysis of microarrays containing a high degree of gene effects.
#@Terri T. Ni,William J. Lemon,Yu Shyr,Tao P. Zhong
#t2008
#cBMC Bioinformatics
#index1220668
#% 
#!
  
#*IDEA: Interactive Display for Evolutionary Analyses.
#@Amy Egan,Anup Mahurkar,Jonathan Crabtree,Jonathan H. Badger,Jane M. Carlton,Joana C. Silva
#t2008
#cBMC Bioinformatics
#index1220669
#% 
#!
  
#*Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient.
#@Jianchao Yao,Chunqi Chang,Mari L. Salmi,Yeung Sam Hung,Ann E. Loraine,Stanley J. Roux
#t2008
#cBMC Bioinformatics
#index1220670
#% 
#!
  
#*OpenMS - An open-source software framework for mass spectrometry.
#@Marc Sturm,Andreas Bertsch,Clemens Gröpl,Andreas Hildebrandt,Rene Hussong,Eva Lange,Nico Pfeifer,Ole Schulz-Trieglaff,Alexandra Zerck,Knut Reinert,Oliver Kohlbacher
#t2008
#cBMC Bioinformatics
#index1220671
#% 
#!
  
#*Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering.
#@Shibu Yooseph,Weizhong Li,Granger G. Sutton
#t2008
#cBMC Bioinformatics
#index1220672
#% 
#!
  
#*PURE: A webserver for the prediction of domains in unassigned regions in proteins.
#@Chilamakuri C. S. Reddy,Khader Shameer,Bernard O. Offmann,Ramanathan Sowdhamini
#t2008
#cBMC Bioinformatics
#index1220673
#% 
#!
  
#*ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family.
#@Alberto I. Roca,Albert E. Almada,Aaron C. Abajian
#t2008
#cBMC Bioinformatics
#index1220674
#% 
#!
  
#*Gene and pathway identification with penalized Bayesian logistic regression.
#@Zhenqiu Liu,Ronald B. Gartenhaus,Ming Tan,Feng Jiang,Xiaoli Jiao
#t2008
#cBMC Bioinformatics
#index1220675
#% 
#!
  
#*The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks.
#@Anatolij Potapov,Björn Goemann,Edgar Wingender
#t2008
#cBMC Bioinformatics
#index1220676
#% 
#!
  
#*ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts.
#@Kwangmin Choi,Sun Kim
#t2008
#cBMC Bioinformatics
#index1220677
#% 
#!
  
#*Efficient computation of absent words in genomic sequences.
#@Julia Herold,Stefan Kurtz,Robert Giegerich
#t2008
#cBMC Bioinformatics
#index1220678
#% 
#!
  
#*Modularization of biochemical networks based on classification of Petri net t-invariants.
#@Eva Grafahrend-Belau,Falk Schreiber,Monika Heiner,Andrea Sackmann,Björn H. Junker,Stefanie Grunwald,Astrid Speer,Katja Winder,Ina Koch
#t2008
#cBMC Bioinformatics
#index1220679
#% 
#!
  
#*Prioritization of gene regulatory interactions from large-scale modules in yeast.
#@Ho-Joon Lee,Thomas Manke,Ricardo Bringas,Martin Vingron
#t2008
#cBMC Bioinformatics
#index1220680
#% 
#!
  
#*Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure.
#@Christopher Bystroff,Bobbie-Jo M. Webb-Robertson
#t2008
#cBMC Bioinformatics
#index1220681
#% 
#!
  
#*SPSmart: adapting population based SNP genotype databases for fast and comprehensive web access.
#@Jorge Amigo,Antonio Salas,Christopher Phillips,Ángel Carracedo
#t2008
#cBMC Bioinformatics
#index1220682
#% 
#!
  
#*The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.
#@Folker Meyer,Daniel Paarmann,M. D'Souza,Robert Olson,E. M. Glass,Michael Kubal,Tobias Paczian,A. Rodriguez,Rick Stevens,Andreas Wilke,Jared Wilkening,Robert A. Edwards
#t2008
#cBMC Bioinformatics
#index1220683
#% 
#!
  
#*An incremental approach to automated protein localisation.
#@Marko Tscherepanow,Nickels Jensen,Franz Kummert
#t2008
#cBMC Bioinformatics
#index1220684
#% 
#!
  
#*Using the longest significance run to estimate region-specific p-values in genetic association mapping studies.
#@Ie-Bin Lian,Yi-Hsien Lin,Ying-Chao Lin,Hsin-Chou Yang,Chee-Jang Chang,Cathy S. J. Fann
#t2008
#cBMC Bioinformatics
#index1220685
#% 
#!
  
#*MPDA: Microarray pooled DNA analyzer.
#@Hsin-Chou Yang,Mei-Chu Huang,Ling-Hui Li,Chien-Hsing Lin,Alice L. T. Yu,Mitchell B. Diccianni,Jer-Yuarn Wu,Yuan-Tsong Chen,Cathy S. J. Fann
#t2008
#cBMC Bioinformatics
#index1220686
#% 
#!
  
#*poolHiTS: A Shifted Transversal Design based pooling strategy for high-throughput drug screening.
#@Raghunandan M. Kainkaryam,Peter J. Woolf
#t2008
#cBMC Bioinformatics
#index1220687
#% 
#!
  
#*MausDB: An open source application for phenotype data and mouse colony management in large-scale mouse phenotyping projects.
#@Holger Maier,Christoph Lengger,Bruno Simic,Helmut Fuchs,Valérie Gailus-Durner,Martin Hrabé de Angelis
#t2008
#cBMC Bioinformatics
#index1220688
#% 
#!
  
#*ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data.
#@Nodin Weddington,Alexander Stuy,Ichiro Hiratani,Tyrone Ryba,Tomoki Yokochi,David M. Gilbert
#t2008
#cBMC Bioinformatics
#index1220689
#% 
#!
  
#*Predicting biological system objectives de novo from internal state measurements.
#@Erwin P. Gianchandani,Matthew A. Oberhardt,Anthony P. Burgard,Costas D. Maranas,Jason A. Papin
#t2008
#cBMC Bioinformatics
#index1220690
#% 
#!
  
#*Adaptive diffusion kernel learning from biological networks for protein function prediction.
#@Liang Sun,Shuiwang Ji,Jieping Ye
#t2008
#cBMC Bioinformatics
#index1220691
#% 
#!
  
#*Normalization for triple-target microarray experiments.
#@Marie-Laure Martin-Magniette,Julie Aubert,Avner Bar-Hen,Samira Elftieh,Frederic Magniette,Jean-Pierre Renou,Jean-Jacques Daudin
#t2008
#cBMC Bioinformatics
#index1220692
#% 
#!
  
#*nGASP - the nematode genome annotation assessment project.
#@Avril Coghlan,Tristan J. Fiedler,Sheldon J. McKay,Paul Flicek,Todd W. Harris,Darin Blasiar,Lincoln D. Stein
#t2008
#cBMC Bioinformatics
#index1220693
#% 
#!
  
#*SimHap GUI: An intuitive graphical user interface for genetic association analysis.
#@Kim W. Carter,Pamela A. McCaskie,Lyle J. Palmer
#t2008
#cBMC Bioinformatics
#index1220694
#% 
#!
  
#*Multidimensional scaling for large genomic data sets.
#@Jengnan Tzeng,Henry Horng-Shing Lu,Wen-Hsiung Li
#t2008
#cBMC Bioinformatics
#index1220695
#% 
#!
  
#*WGCNA: an R package for weighted correlation network analysis.
#@Peter Langfelder,Steve Horvath
#t2008
#cBMC Bioinformatics
#index1220696
#% 
#!
  
#*Novel computational methods for increasing PCR primer design effectiveness in directed sequencing.
#@Kelvin Li,Anushka Brownley,Timothy B. Stockwell,Karen Beeson,Tina C. McIntosh,Dana Busam,Steve Ferriera,Sean Murphy,Samuel Levy
#t2008
#cBMC Bioinformatics
#index1220697
#% 
#!
  
#*MS-DOCK: Accurate multiple conformation generator and rigid docking protocol for multi-step virtual ligand screening.
#@Nicolas Sauton,David Lagorce,Bruno O. Villoutreix,Maria A. Miteva
#t2008
#cBMC Bioinformatics
#index1220698
#% 
#!
  
#*NITPICK: peak identification for mass spectrometry data.
#@Bernhard Y. Renard,Marc Kirchner,Hanno Steen,Judith A. J. Steen,Fred A. Hamprecht
#t2008
#cBMC Bioinformatics
#index1220699
#% 
#!
  
#*QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR.
#@Samuel Arvidsson,Miroslaw Kwasniewski,Diego Mauricio Riaño-Pachón,Bernd Mueller-Roeber
#t2008
#cBMC Bioinformatics
#index1220700
#% 
#!
  
#*Signature Evaluation Tool (SET): a Java-based tool to evaluate and visualize the sample discrimination abilities of gene expression signatures.
#@Chih-Hung Jen,Tsun-Po Yang,Chien-Yi Tung,Shu-Han Su,Chi-Hung Lin,Ming-Ta Hsu,Hsei-Wei Wang
#t2008
#cBMC Bioinformatics
#index1220701
#% 
#!
  
#*Simultaneous fitting of real-time PCR data with efficiency of amplification modeled as Gaussian function of target fluorescence.
#@Anke Batsch,Andrea Noetel,Christian Fork,Anita Urban,Daliborka Lazic,Tina Lucas,Julia Pietsch,Andreas Lazar,Edgar Schömig,Dirk Gründemann
#t2008
#cBMC Bioinformatics
#index1220702
#% 
#!
  
#*A visual analytics approach for understanding biclustering results from microarray data.
#@Rodrigo Santamaría,Roberto Therón,Luis Quintales
#t2008
#cBMC Bioinformatics
#index1220703
#% 
#!
  
#*Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer.
#@Raffaele Giancarlo,Davide Scaturro,Filippo Utro
#t2008
#cBMC Bioinformatics
#index1220704
#% 
#!
  
#*MAID : An effect size based model for microarray data integration across laboratories and platforms.
#@Ivan Borozan,Limin Chen,Bryan Paeper,Jenny E. Heathcote,Aled M. Edwards,Michael Katze,Zhaolei Zhang,Ian D. McGilvray
#t2008
#cBMC Bioinformatics
#index1220705
#% 
#!
  
#*Identification of hot-spot residues in protein-protein interactions by computational docking.
#@Solène Grosdidier,Juan Fernández-Recio
#t2008
#cBMC Bioinformatics
#index1220706
#% 
#!
  
#*Multi-agent systems in epidemiology: a first step for computational biology in the study of vector-borne disease transmission.
#@Benjamin Roche,Jean-François Guégan,François Bousquet
#t2008
#cBMC Bioinformatics
#index1220707
#% 
#!
  
#*A comparison of machine learning algorithms for chemical toxicity classification using a simulated multi-scale data model.
#@Richard Judson,Fathi Elloumi,R. Woodrow Setzer,Zhen Li,Imran Shah
#t2008
#cBMC Bioinformatics
#index1220708
#% 
#!
  
#*Extending pathways based on gene lists using InterPro domain signatures.
#@Florian Hahne,Alexander Mehrle,Dorit Arlt,Annemarie Poustka,Stefan Wiemann,Tim Beißbarth
#t2008
#cBMC Bioinformatics
#index1220709
#% 
#!
  
#*The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.
#@Chenggang Yu,Nela Zavaljevski,Valmik Desai,Seth Johnson,Fred J. Stevens,Jaques Reifman
#t2008
#cBMC Bioinformatics
#index1220710
#% 
#!
  
#*, an efficient and flexible software for detection of LTR retrotransposons.
#@David Ellinghaus,Stefan Kurtz,Ute Willhoeft
#t2008
#cBMC Bioinformatics
#index1220711
#% 
#!
  
#*Position dependent mismatch discrimination on DNA microarrays - experiments and model.
#@Thomas Naiser,Jona Kayser,Timo Mai,Wolfgang Michel,Albrecht Ott
#t2008
#cBMC Bioinformatics
#index1220712
#% 
#!
  
#*Algorithm of OMA for large-scale orthology inference.
#@Alexander C. J. Roth,Gaston H. Gonnet,Christophe Dessimoz
#t2008
#cBMC Bioinformatics
#index1220713
#% 
#!
  
#*Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework.
#@Kazutaka Katoh,Hiroyuki Toh
#t2008
#cBMC Bioinformatics
#index1220714
#% 
#!
  
#*Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution.
#@Rekin's Janky,Jacques van Helden
#t2008
#cBMC Bioinformatics
#index1220715
#% 
#!
  
#*Microarray data mining using landmark gene-guided clustering.
#@Pankaj Chopra,Jaewoo Kang,Jiong Yang,HyungJun Cho,Heenam Stanley Kim,Min-Goo Lee
#t2008
#cBMC Bioinformatics
#index1220716
#% 
#!
  
#*Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization.
#@Kin-On Cheng,Ngai-Fong Law,Wan-Chi Siu,Alan Wee-Chung Liew
#t2008
#cBMC Bioinformatics
#index1220717
#% 
#!
  
#*2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments.
#@Jens Allmer,Sebastian Kuhlgert,Michael Hippler
#t2008
#cBMC Bioinformatics
#index1220718
#% 
#!
  
#*Estimating the size of the solution space of metabolic networks.
#@Alfredo Braunstein,Roberto Mulet,Andrea Pagnani
#t2008
#cBMC Bioinformatics
#index1220719
#% 
#!
  
#*Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations.
#@Jukka Corander,Pekka Marttinen,Jukka Sirén,Jing Tang
#t2008
#cBMC Bioinformatics
#index1220720
#% 
#!
  
#*RNAalifold: improved consensus structure prediction for RNA alignments.
#@Stephan H. F. Bernhart,Ivo L. Hofacker,Sebastian Will,Andreas R. Gruber,Peter F. Stadler
#t2008
#cBMC Bioinformatics
#index1220721
#% 
#!
  
#*Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.
#@Yuji Zhang,Jianhua Xuan,Benildo de los Reyes,Robert Clarke,Habtom W. Ressom
#t2008
#cBMC Bioinformatics
#index1220722
#% 
#!
  
#*A method for analyzing censored survival phenotype with gene expression data.
#@Tongtong Wu,Wei Sun,Shinsheng Yuan,Chun-Houh Chen,Ker-Chau Li
#t2008
#cBMC Bioinformatics
#index1220723
#% 
#!
  
#*Standardized high-throughput evaluation of cell-based compound screens.
#@Peter Frommolt,Roman K. Thomas
#t2008
#cBMC Bioinformatics
#index1220724
#% 
#!
  
#*Multi-label literature classification based on the Gene Ontology graph.
#@Bo Jin,Brian Muller,Chengxiang Zhai,Xinghua Lu
#t2008
#cBMC Bioinformatics
#index1220725
#% 
#!
  
#*Exon level integration of proteomics and microarray data.
#@Danny A. Bitton,Michal J. Okoniewski,Yvonne Connolly,Crispin J. Miller
#t2008
#cBMC Bioinformatics
#index1220726
#% 
#!
  
#*A relation based measure of semantic similarity for Gene Ontology annotations.
#@Brendan Sheehan,Aaron J. Quigley,Benoit Gaudin,Simon Dobson
#t2008
#cBMC Bioinformatics
#index1220727
#% 
#!
  
#*Identification of biomarkers for genotyping using non-linear methods for clustering and classification.
#@Irene Kouskoumvekaki,Zhiyong Yang,Svava Óisk Jónsdóttir,Lisbeth Olsson,Gianni Panagiotou
#t2008
#cBMC Bioinformatics
#index1220728
#% 
#!
  
#*Function approximation approach to the inference of reduced NGnet models of genetic networks.
#@Shuhei Kimura,Katsuki Sonoda,Soichiro Yamane,Hideki Maeda,Koki Matsumura,Mariko Hatakeyama
#t2008
#cBMC Bioinformatics
#index1220729
#% 
#!
  
#*DOVIS: an implementation for high-throughput virtual screening using AutoDock.
#@Shuxing Zhang,Kamal Kumar,Xiaohui Jiang,Anders Wallqvist,Jaques Reifman
#t2008
#cBMC Bioinformatics
#index1220730
#% 
#!
  
#*Evaluation of genomic island predictors using a comparative genomics approach.
#@Morgan G. I. Langille,William W. L. Hsiao,Fiona S. L. Brinkman
#t2008
#cBMC Bioinformatics
#index1220731
#% 
#!
  
#*The Second International Symposium on Languages in Biology and Medicine (LBM) 2007.
#@Jian Su,Christopher J. O. Baker
#t2008
#cBMC Bioinformatics
#index1220732
#% 
#!
  
#*A comparison of common programming languages used in bioinformatics.
#@Mathieu Fourment,Michael R. Gillings
#t2008
#cBMC Bioinformatics
#index1220733
#% 
#!
  
#*Goldsurfer2 (Gs2): A comprehensive tool for the analysis and visualization of genome wide association studies.
#@Fredrik Pettersson,Andrew P. Morris,Michael R. Barnes,Lon R. Cardon
#t2008
#cBMC Bioinformatics
#index1220734
#% 
#!
  
#*Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence.
#@Adriano Barbosa-Silva,Venkata P. Satagopam,Reinhard Schneider,J. Miguel Ortega
#t2008
#cBMC Bioinformatics
#index1220735
#% 
#!
  
#*Aspects of coverage in medical DNA sequencing.
#@Michael C. Wendl,Richard K. Wilson
#t2008
#cBMC Bioinformatics
#index1220736
#% 
#!
  
#*Information-based methods for predicting gene function from systematic gene knock-downs.
#@Matthew T. Weirauch,Christopher K. Wong,Alexandra B. Byrne,Joshua M. Stuart
#t2008
#cBMC Bioinformatics
#index1220737
#% 
#!
  
#*Conditional clustering of temporal expression profiles.
#@Ling Wang,Monty Montano,Matt Rarick,Paola Sebastiani
#t2008
#cBMC Bioinformatics
#index1220738
#% 
#!
  
#*Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces.
#@Andrew J. Bordner,Andrey A. Gorin
#t2008
#cBMC Bioinformatics
#index1220739
#% 
#!
  
#*A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification.
#@Alexander R. Statnikov,Lily Wang,Constantin F. Aliferis
#t2008
#cBMC Bioinformatics
#index1220740
#% 
#!
  
#*Modifying the DPClus algorithm for identifying protein complexes based on new topological structures.
#@Min Li,Jianer Chen,Jianxin Wang,Bin Hu,Gang Chen
#t2008
#cBMC Bioinformatics
#index1220741
#% 
#!
  
#*SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies.
#@Michael C. Ryan,Barry Zeeberg,Natasha J. Caplen,James A. Cleland,Ari B. Kahn,Hongfang Liu,John N. Weinstein
#t2008
#cBMC Bioinformatics
#index1220742
#% 
#!
  
#*PseudoGeneQuest - Service for identification of different pseudogene types in the human genome.
#@Csaba P. Ortutay,Mauno Vihinen
#t2008
#cBMC Bioinformatics
#index1220743
#% 
#!
  
#*Automatically extracting functionally equivalent proteins from SwissProt.
#@Lisa E. M. McMillan,Andrew C. R. Martin
#t2008
#cBMC Bioinformatics
#index1220744
#% 
#!
  
#*GenCLiP: a software program for clustering gene lists by literature profiling and constructing gene co-occurrence networks related to custom keywords.
#@Zhong-Xi Huang,Hui-Yong Tian,Zhen-Fu Hu,Yi-Bo Zhou,Jin Zhao,Kai-Tai Yao
#t2008
#cBMC Bioinformatics
#index1220745
#% 
#!
  
#*A phase synchronization clustering algorithm for identifying interesting groups of genes from cell cycle expression data.
#@Chang Sik Kim,Cheol Soo Bae,Hong Joon Tcha
#t2008
#cBMC Bioinformatics
#index1220746
#% 
#!
  
#*Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes.
#@Guy N. Brock,John R. Shaffer,Richard E. Blakesley,Meredith J. Lotz,George C. Tseng
#t2008
#cBMC Bioinformatics
#index1220747
#% 
#!
  
#*IgTM: An algorithm to predict transmembrane domains and topology in proteins.
#@Piedachu Peris,Damián López,Marcelino Campos
#t2008
#cBMC Bioinformatics
#index1220748
#% 
#!
  
#*OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology.
#@Kieran O'Neill,Alexander García Castro,Anita Schwegmann,Rafael C. Jimenez,Dan Jacobson,Henning Hermjakob
#t2008
#cBMC Bioinformatics
#index1220749
#% 
#!
  
#*Examining the significance of fingerprint-based classifiers.
#@Brian T. Luke,Jack R. Collins
#t2008
#cBMC Bioinformatics
#index1220750
#% 
#!
  
#*Using an evolutionary algorithm and parallel computing for haplotyping in a general complex pedigree with multiple marker loci.
#@Sang Hong Lee,Julius H. J. Van der Werf,Brian P. Kinghorn
#t2008
#cBMC Bioinformatics
#index1220751
#% 
#!
  
#*Directed acyclic graph kernels for structural RNA analysis.
#@Kengo Sato,Toutai Mituyama,Kiyoshi Asai,Yasubumi Sakakibara
#t2008
#cBMC Bioinformatics
#index1220752
#% 
#!
  
#*RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database.
#@Mirela Andronescu,Vera Bereg,Holger H. Hoos,Anne Condon
#t2008
#cBMC Bioinformatics
#index1220753
#% 
#!
  
#*Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research.
#@Yoginder S. Dandass,Shane C. Burgess,Mark Lawrence,Susan M. Bridges
#t2008
#cBMC Bioinformatics
#index1220754
#% 
#!
  
#*Using quality scores and longer reads improves accuracy of Solexa read mapping.
#@Andrew D. Smith,Zhenyu Xuan,Michael Q. Zhang
#t2008
#cBMC Bioinformatics
#index1220755
#% 
#!
  
#*Prediction of enzyme function based on 3D templates of evolutionarily important amino acids.
#@David M. Kristensen,R. Matthew Ward,Andreas Martin Lisewski,Serkan Erdin,Brian Y. Chen,Viacheslav Fofanov,Marek Kimmel,Lydia E. Kavraki,Olivier Lichtarge
#t2008
#cBMC Bioinformatics
#index1220756
#% 
#!
  
#*Gene function prediction using labeled and unlabeled data.
#@Xing-Ming Zhao,Yong Wang,Luonan Chen,Kazuyuki Aihara
#t2008
#cBMC Bioinformatics
#index1220757
#% 
#!
  
#*New time-scale criteria for model simplification of bio-reaction systems.
#@Junwon Choi,Kyung-won Yang,Tai-yong Lee,Sang Yup Lee
#t2008
#cBMC Bioinformatics
#index1220758
#% 
#!
  
#*Normalization of oligonucleotide arrays based on the least-variant set of genes.
#@Stefano Calza,Davide Valentini,Yudi Pawitan
#t2008
#cBMC Bioinformatics
#index1220759
#% 
#!
  
#*HECTAR: A method to predict subcellular targeting in heterokonts.
#@Bernhard Gschloessl,Yann Guermeur,J. Mark Cock
#t2008
#cBMC Bioinformatics
#index1220760
#% 
#!
  
#*Evaluation of time profile reconstruction from complex two-color microarray designs.
#@Ana C. Fierro,Raphael Thuret,Kristof Engelen,Gilles Bernot,Kathleen Marchal,Nicolas Pollet
#t2008
#cBMC Bioinformatics
#index1220761
#% 
#!
  
#*Ori-Finder: A web-based system for finding s in unannotated bacterial genomes.
#@Feng Gao,Chun-Ting Zhang
#t2008
#cBMC Bioinformatics
#index1220762
#% 
#!
  
#*Shape based indexing for faster search of RNA family databases.
#@Stefan Janssen,Jens Reeder,Robert Giegerich
#t2008
#cBMC Bioinformatics
#index1220763
#% 
#!
  
#*Simple integrative preprocessing preserves what is shared in data sources.
#@Abhishek Tripathi,Arto Klami,Samuel Kaski
#t2008
#cBMC Bioinformatics
#index1220764
#% 
#!
  
#*CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions.
#@Woochang Hwang,Young-Rae Cho,Aidong Zhang,Murali Ramanathan
#t2008
#cBMC Bioinformatics
#index1220765
#% 
#!
  
#*GeNESiS: gene network evolution simulation software.
#@Anton Kratz,Masaru Tomita,Arun Krishnan
#t2008
#cBMC Bioinformatics
#index1220766
#% 
#!
  
#*Identification of a small optimal subset of CpG sites as bio-markers from high-throughput DNA methylation profiles.
#@Hailong Meng,Edward Lenn Murrelle,Guoya Li
#t2008
#cBMC Bioinformatics
#index1220767
#% 
#!
  
#*GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed.
#@Rong Chen,Rohan Mallelwar,Ajit Thosar,Shivkumar Venkatasubrahmanyam,Atul J. Butte
#t2008
#cBMC Bioinformatics
#index1220768
#% 
#!
  
#*Evolutionary approaches for the reverse-engineering of gene regulatory networks: A study on a biologically realistic dataset.
#@Cédric Auliac,Vincent Frouin,Xavier Gidrol,Florence d'Alché-Buc
#t2008
#cBMC Bioinformatics
#index1220769
#% 
#!
  
#*FCI: an R-based algorithm for evaluating uncertainty of absolute real-time PCR quantification.
#@Paolo Verderio,Sara Pizzamiglio,Fabio Gallo,Simon C. Ramsden
#t2008
#cBMC Bioinformatics
#index1220770
#% 
#!
  
#*Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites.
#@Nak-Kyeong Kim,Kannan Tharakaraman,Leonardo Mariño-Ramírez,John L. Spouge
#t2008
#cBMC Bioinformatics
#index1220771
#% 
#!
  
#*Predicting protein linkages in bacteria: Which method is best depends on task.
#@Anis Karimpour-Fard,Sonia M. Leach,Ryan T. Gill,Lawrence Hunter
#t2008
#cBMC Bioinformatics
#index1220772
#% 
#!
  
#*The Average Mutual Information Profile as a Genomic Signature.
#@Mark Bauer,Sheldon M. Schuster,Khalid Sayood
#t2008
#cBMC Bioinformatics
#index1220773
#% 
#!
  
#*A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge.
#@Young-Rae Cho,Lei Shi,Murali Ramanathan,Aidong Zhang
#t2008
#cBMC Bioinformatics
#index1220774
#% 
#!
  
#*Gene Ontology term overlap as a measure of gene functional similarity.
#@Meeta Mistry,Paul Pavlidis
#t2008
#cBMC Bioinformatics
#index1220775
#% 
#!
  
#*Objective and automated protocols for the evaluation of biomedical search engines using No Title Evaluation protocols.
#@Fabien Campagne
#t2008
#cBMC Bioinformatics
#index1220776
#% 
#!
  
#*Relating gene expression data on two-component systems to functional annotations in .
#@Anne M. Denton,Jianfei Wu,Megan K. Townsend,Preeti Sule,Birgit M. Prüß
#t2008
#cBMC Bioinformatics
#index1220777
#% 
#!
  
#*Binning sequences using very sparse labels within a metagenome.
#@Chon-Kit Kenneth Chan,Arthur L. Hsu,Saman K. Halgamuge,Sen-Lin Tang
#t2008
#cBMC Bioinformatics
#index1220778
#% 
#!
  
#*analysis of methyltransferase domains involved in biosynthesis of secondary metabolites.
#@Mohd. Zeeshan Ansari,Jyoti Sharma,Rajesh S. Gokhale,Debasisa Mohanty
#t2008
#cBMC Bioinformatics
#index1220779
#% 
#!
  
#*A perspective for biomedical data integration: Design of databases for flow cytometry.
#@John Drakos,Marina Karakantza,Nicholas C. Zoumbos,John Lakoumentas,George Nikiforidis,George Sakellaropoulos
#t2008
#cBMC Bioinformatics
#index1220780
#% 
#!
  
#*Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes.
#@Inna Myslyuk,Tirza Doniger,Yair Horesh,Avraham Hury,Ran Hoffer,Yaara Ziporen,Shulamit Michaeli,Ron Unger
#t2008
#cBMC Bioinformatics
#index1220781
#% 
#!
  
#*A simple and robust method for connecting small-molecule drugs using gene-expression signatures.
#@Shu-Dong Zhang,Timothy W. Gant
#t2008
#cBMC Bioinformatics
#index1220782
#% 
#!
  
#*Inferring modules of functionally interacting proteins using the Bond Energy Algorithm.
#@Ryosuke Watanabe,Enrique Morett,Edgar E. Vallejo
#t2008
#cBMC Bioinformatics
#index1220783
#% 
#!
  
#*Classification of drug molecules considering their ICvalues using mixed-integer linear programming based hyper-boxes method.
#@Pelin Armutlu,Muhittin Emre Ozdemir,Fadime Üney Yüksektepe,I. Halil Kavakli,Metin Türkay
#t2008
#cBMC Bioinformatics
#index1220784
#% 
#!
  
#*GENOMEPOP: A program to simulate genomes in populations.
#@Antonio Carvajal-Rodríguez
#t2008
#cBMC Bioinformatics
#index1220785
#% 
#!
  
#*Systems biology driven software design for the research enterprise.
#@John Boyle,Christopher C. Cavnor,Sarah A. Killcoyne,Ilya Shmulevich
#t2008
#cBMC Bioinformatics
#index1220786
#% 
#!
  
#*PocketMatch: A new algorithm to compare binding sites in protein structures.
#@Kalidas Yeturu,Nagasuma Chandra
#t2008
#cBMC Bioinformatics
#index1220787
#% 
#!
  
#*Conserved co-expression for candidate disease gene prioritization.
#@Martin Oti,Jeroen van Reeuwijk,Martijn A. Huynen,Han G. Brunner
#t2008
#cBMC Bioinformatics
#index1220788
#% 
#!
  
#*Combining sequence-based prediction methods and circular dichroism and infrared spectroscopic data to improve protein secondary structure determinations.
#@Jonathan G. Lees,Robert W. Janes
#t2008
#cBMC Bioinformatics
#index1220789
#% 
#!
  
#*SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of .
#@Martin Kostka,Magdalena Uzlikova,Ivan Cepicka,Jaroslav Flegr
#t2008
#cBMC Bioinformatics
#index1220790
#% 
#!
  
#*A unified approach to false discovery rate estimation.
#@Korbinian Strimmer
#t2008
#cBMC Bioinformatics
#index1220791
#% 
#!
  
#*Building pathway clusters from Random Forests classification using class votes.
#@Herbert Pang,Hongyu Zhao
#t2008
#cBMC Bioinformatics
#index1220792
#% 
#!
  
#*Improved identification of conserved cassette exons using Bayesian networks.
#@Rileen Sinha,Michael Hiller,Rainer Pudimat,Ulrike Gausmann,Matthias Platzer,Rolf Backofen
#t2008
#cBMC Bioinformatics
#index1220793
#% 
#!
  
#*Variable selection for large small regression models with incomplete data: Mapping QTL with epistases.
#@Min Zhang,Dabao Zhang,Martin T. Wells
#t2008
#cBMC Bioinformatics
#index1220794
#% 
#!
  
#*A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the algorithm.
#@Sheila Podell,Terry Gaasterland,Eric E. Allen
#t2008
#cBMC Bioinformatics
#index1220795
#% 
#!
  
#*PhySIC_IST: cleaning source trees to infer more informative supertrees.
#@Celine Scornavacca,Vincent Berry,Vincent Lefort,Emmanuel J. P. Douzery,Vincent Ranwez
#t2008
#cBMC Bioinformatics
#index1220796
#% 
#!
  
#*Significance analysis of microarray for relative quantitation of LC/MS data in proteomics.
#@Bryan A. P. Roxas,Qingbo Li
#t2008
#cBMC Bioinformatics
#index1220797
#% 
#!
  
#*SQUAT: A web tool to mine human, murine and avian SAGE data.
#@Johan Leyritz,Stéphane Schicklin,Sylvain Blachon,Céline Keime,Céline Robardet,Jean-François Boulicaut,Jérémy Besson,Ruggero G. Pensa,Olivier Gandrillon
#t2008
#cBMC Bioinformatics
#index1220798
#% 
#!
  
#*The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction.
#@Jonathan R. Manning,Emily R. Jefferson,Geoffrey J. Barton
#t2008
#cBMC Bioinformatics
#index1220799
#% 
#!
  
#*Predicting the Interactome of pathovar oryzae for target selection and DB service.
#@Jeong-Gu Kim,Daeui Park,Byoung-Chul Kim,Seong-Woong Cho,Yeong Tae Kim,Young-Jin Park,Hee Jung Cho,Hyunseok Park,Ki-Bong Kim,Kyong-Oh Yoon,Soo-Jun Park,Byoung-Moo Lee,Jong Bhak
#t2008
#cBMC Bioinformatics
#index1220800
#% 
#!
  
#*Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions.
#@E. Andres Houseman,Brock C. Christensen,Ru-Fang Yeh,Carmen J. Marsit,Margaret R. Karagas,Margaret R. Wrensch,Heather H. Nelson,Joseph Wiemels,Shichun Zheng,John Wiencke,Karl Kelsey
#t2008
#cBMC Bioinformatics
#index1220801
#% 
#!
  
#*Function2Gene: A gene selection tool to increase the power of genetic association studies by utilizing public databases and expert knowledge.
#@Don L. Armstrong,Chaim O. Jacob,Raphael Zidovetzki
#t2008
#cBMC Bioinformatics
#index1220802
#% 
#!
  
#*Using a logical model to predict the growth of yeast.
#@Ken E. Whelan,Ross D. King
#t2008
#cBMC Bioinformatics
#index1220803
#% 
#!
  
#*Reranking candidate gene models with cross-species comparison for improved gene prediction.
#@Qian Liu,Koby Crammer,Fernando C. N. Pereira,David S. Roos
#t2008
#cBMC Bioinformatics
#index1220804
#% 
#!
  
#*Knowledge-guided multi-scale independent component analysis for biomarker identification.
#@Li Chen,Jianhua Xuan,Chen Wang,Ie-Ming Shih,Yue Wang,Zhen Zhang,Eric P. Hoffman,Robert Clarke
#t2008
#cBMC Bioinformatics
#index1220805
#% 
#!
  
#*"TOF2H": A precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an LC-MALDI approach, covering the data pipeline from spectral acquisition to HDX rate analysis.
#@Pornpat Nikamanon,Elroy Pun,Wayne Chou,Marek D. Koter,Paul D. Gershon
#t2008
#cBMC Bioinformatics
#index1220806
#% 
#!
  
#*TileQC: A system for tile-based quality control of Solexa data.
#@Peter C. Dolan,Dee R. Denver
#t2008
#cBMC Bioinformatics
#index1220807
#% 
#!
  
#*Empirical Bayes analysis of single nucleotide polymorphisms.
#@Holger Schwender,Katja Ickstadt
#t2008
#cBMC Bioinformatics
#index1220808
#% 
#!
  
#*Improved machine learning method for analysis of gas phase chemistry of peptides.
#@Allison Gehrke,Shaojun Sun,Lukasz A. Kurgan,Natalie Ahn,Katheryn Resing,Karen Kafadar,Krzysztof J. Cios
#t2008
#cBMC Bioinformatics
#index1220809
#% 
#!
  
#*GBNet: Deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approach.
#@Li Shen,Jie Liu,Wei Wang
#t2008
#cBMC Bioinformatics
#index1220810
#% 
#!
  
#*AMYPdb: A database dedicated to amyloid precursor proteins.
#@Sandrine Pawlicki,Antony Le Béchec,Christian Delamarche
#t2008
#cBMC Bioinformatics
#index1220811
#% 
#!
  
#*EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration.
#@Javier Forment,Francisco Gilabert Villamón,Antonio Robles,Vicente Conejero,Fernando Nuez,Jose M. Blanca
#t2008
#cBMC Bioinformatics
#index1220812
#% 
#!
  
#*Probabilistic base calling of Solexa sequencing data.
#@Jacques Rougemont,Arnaud Amzallag,Christian Iseli,Laurent Farinelli,Ioannis Xenarios,Felix Naef
#t2008
#cBMC Bioinformatics
#index1220813
#% 
#!
  
#*TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model.
#@Mallika Veeramalai,Yuzhen Ye,Adam Godzik
#t2008
#cBMC Bioinformatics
#index1220814
#% 
#!
  
#*Synonym set extraction from the biomedical literature by lexical pattern discovery.
#@John McCrae,Nigel Collier
#t2008
#cBMC Bioinformatics
#index1220815
#% 
#!
  
#*A high-throughput pipeline for designing microarray-based pathogen diagnostic assays.
#@Ravi Vijaya Satya,Nela Zavaljevski,Kamal Kumar,Jaques Reifman
#t2008
#cBMC Bioinformatics
#index1220816
#% 
#!
  
#*Comparison study on k-word statistical measures for protein: From sequence to 'sequence space'.
#@Qi Dai,Tian-Ming Wang
#t2008
#cBMC Bioinformatics
#index1220817
#% 
#!
  
#*ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins.
#@Aarti Garg,Gajendra P. S. Raghava
#t2008
#cBMC Bioinformatics
#index1220818
#% 
#!
  
#*Discovering gene annotations in biomedical text databases.
#@Ali Cakmak,Gultekin Özsoyoglu
#t2008
#cBMC Bioinformatics
#index1220819
#% 
#!
  
#*SCOWLP classification: Structural comparison and analysis of protein binding regions.
#@Joan Teyra,Maciej Paszkowski-Rogacz,Gerd Anders,M. Teresa Pisabarro
#t2008
#cBMC Bioinformatics
#index1220820
#% 
#!
  
#*GenomeMatcher: A graphical user interface for DNA sequence comparison.
#@Yoshiyuki Ohtsubo,Wakako Ikeda-Ohtsubo,Yuji Nagata,Masataka Tsuda
#t2008
#cBMC Bioinformatics
#index1220821
#% 
#!
  
#*SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics.
#@Fabrice Touzain,Sophie Schbath,Isabelle Debled-Rennesson,Bertrand Aigle,Gregory Kucherov,Pierre Leblond
#t2008
#cBMC Bioinformatics
#index1220822
#% 
#!
  
#*E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI).
#@Pere Puigbò,Ignacio G. Bravo,Santiago Garcia-Vallvé
#t2008
#cBMC Bioinformatics
#index1220823
#% 
#!
  
#*A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification.
#@Ning Wei,Erwin Flaschel,Karl Friehs,Tim W. Nattkemper
#t2008
#cBMC Bioinformatics
#index1220824
#% 
#!
  
#*Semantic role labeling for protein transport predicates.
#@Steven Bethard,Zhiyong Lu,James H. Martin,Lawrence Hunter
#t2008
#cBMC Bioinformatics
#index1220825
#% 
#!
  
#*A PATO-compliant zebrafish screening database (MODB): management of morpholino knockdown screen information.
#@Michelle N. Knowlton,Tongbin Li,Yongliang Ren,Brent R. Bill,Lynda B. M. Ellis,Stephen C. Ekker
#t2008
#cBMC Bioinformatics
#index1220826
#% 
#!
  
#*The comparative analysis of statistics, based on the likelihood ratio criterion, in the automated annotation problem.
#@Andrey M. Leontovich,Konstantin Y. Tokmachev,Hans C. van Houwelingen
#t2008
#cBMC Bioinformatics
#index1220827
#% 
#!
  
#*An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories.
#@Hong Sun,Hakan Ferhatosmanoglu,Motonori Ota,Yusu Wang
#t2008
#cBMC Bioinformatics
#index1220828
#% 
#!
  
#*Novel methodology for construction and pruning of quasi-median networks.
#@Sarah C. Ayling,Terence A. Brown
#t2008
#cBMC Bioinformatics
#index1220829
#% 
#!
  
#*CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes.
#@Matthew S. Hestand,Michiel van Galen,Michel P. Villerius,Gert-Jan B. van Ommen,Johan T. den Dunnen,Peter A. C. 't Hoen
#t2008
#cBMC Bioinformatics
#index1220830
#% 
#!
  
#*FERN - a Java framework for stochastic simulation and evaluation of reaction networks.
#@Florian Erhard,Caroline C. Friedel,Ralf Zimmer
#t2008
#cBMC Bioinformatics
#index1220831
#% 
#!
  
#*Unsupervised reduction of random noise in complex data by a row-specific, sorted principal component-guided method.
#@Joseph W. Foley,Fumiaki Katagiri
#t2008
#cBMC Bioinformatics
#index1220832
#% 
#!
  
#*NullHap - a versatile application to estimate haplotype frequencies from unphased genotypes in the presence of null alleles.
#@Robert M. Nowak,Rafal Ploski
#t2008
#cBMC Bioinformatics
#index1220833
#% 
#!
  
#*Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies.
#@Li Ma,H. Birali Runesha,Daniel Dvorkin,John R. Garbe,Yang Da
#t2008
#cBMC Bioinformatics
#index1220834
#% 
#!
  
#*Evolutionary Pareto-optimization of stably folding peptides.
#@Wolfram Gronwald,Tim Hohm,Daniel Hoffmann
#t2008
#cBMC Bioinformatics
#index1220835
#% 
#!
  
#*GAPscreener: An automatic tool for screening human genetic association literature in PubMed using the support vector machine technique.
#@Wei Yu,Melinda Clyne,Siobhan M. Dolan,Ajay Yesupriya,Anja Wulf,Tiebin Liu,Muin J. Khoury,Marta Gwinn
#t2008
#cBMC Bioinformatics
#index1220836
#% 
#!
  
#*Inferring transcriptional compensation interactions in yeast via stepwise structure equation modeling.
#@Grace S. Shieh,Chung-Ming Chen,Ching-Yun Yu,Juiling Huang,Woei-Fuh Wang,Yi-Chen Lo
#t2008
#cBMC Bioinformatics
#index1220837
#% 
#!
  
#*OSIRISv1.2: A named entity recognition system for sequence variants of genes in biomedical literature.
#@Laura Inés Furlong,Holger Dach,Martin Hofmann-Apitius,Ferran Sanz
#t2008
#cBMC Bioinformatics
#index1220838
#% 
#!
  
#*Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments.
#@Stephen W. Tanner,Pankaj Agarwal
#t2008
#cBMC Bioinformatics
#index1220839
#% 
#!
  
#*Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation.
#@Leonid Zaslavsky,Yiming Bao,Tatiana A. Tatusova
#t2008
#cBMC Bioinformatics
#index1220840
#% 
#!
  
#*Increasing the efficiency of bacterial transcription simulations: When to exclude the genome without loss of accuracy.
#@Marco A. J. Iafolla,Guang Qiang Dong,David R. McMillen
#t2008
#cBMC Bioinformatics
#index1220841
#% 
#!
  
#*A nonparametric model for quality control of database search results in shotgun proteomics.
#@Jiyang Zhang,Jianqi Li,Xin Liu,Hongwei Xie,Yunping Zhu,Fuchu He
#t2008
#cBMC Bioinformatics
#index1220842
#% 
#!
  
#*Improving the prediction of mRNA extremities in the parasitic protozoan .
#@Martin Smith,Mathieu Blanchette,Barbara Papadopoulou
#t2008
#cBMC Bioinformatics
#index1220843
#% 
#!
  
#*Prediction of protein-protein binding site by using core interface residue and support vector machine.
#@Nan Li,Zhonghua Sun,Fan Jiang
#t2008
#cBMC Bioinformatics
#index1220844
#% 
#!
  
#*Highly sensitive feature detection for high resolution LC/MS.
#@Ralf Tautenhahn,Christoph Böttcher,Steffen Neumann
#t2008
#cBMC Bioinformatics
#index1220845
#% 
#!
  
#*miRNAminer: A tool for homologous microRNA gene search.
#@Shay Artzi,Adam Kiezun,Noam Shomron
#t2008
#cBMC Bioinformatics
#index1220846
#% 
#!
  
#*Snagger: A user-friendly program for incorporating additional information for tagSNP selection.
#@Christopher K. Edlund,Won H. Lee,Dalin Li,David J. Van Den Berg,David V. Conti
#t2008
#cBMC Bioinformatics
#index1220847
#% 
#!
  
#*Kismeth: Analyzer of plant methylation states through bisulfite sequencing.
#@Eyal Gruntman,Yijun Qi,R. Keith Slotkin,Ted Roeder,Robert A. Martienssen,Ravi Sachidanandam
#t2008
#cBMC Bioinformatics
#index1220848
#% 
#!
  
#*Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species.
#@Oliver Keller,Florian Odronitz,Mario Stanke,Martin Kollmar,Stephan Waack
#t2008
#cBMC Bioinformatics
#index1220849
#% 
#!
  
#*Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens.
#@Zheng Yin,Xiaobo Zhou,Chris Bakal,Fuhai Li,Youxian Sun,Norbert Perrimon,Stephen T. C. Wong
#t2008
#cBMC Bioinformatics
#index1220850
#% 
#!
  
#*MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data.
#@Bryan Chi,Ronald J. deLeeuw,Bradley P. Coe,Raymond T. Ng,Calum MacAulay,Wan L. Lam
#t2008
#cBMC Bioinformatics
#index1220851
#% 
#!
  
#*A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions.
#@Martin Bader,Mohamed Ibrahim Abouelhoda,Enno Ohlebusch
#t2008
#cBMC Bioinformatics
#index1220852
#% 
#!
  
#*A simple and fast heuristic for protein structure comparison.
#@David A. Pelta,Juan Ramón González,Marcos Moreno Vega
#t2008
#cBMC Bioinformatics
#index1220853
#% 
#!
  
#*A general modeling and visualization tool for comparing different members of a group: application to studying tau-mediated regulation of microtubule dynamics.
#@Arnab Bhattacharya,Sasha Levy,Adria LeBoeuf,Michelle Gaylord,Leslie Wilson,Ambuj K. Singh,Stuart C. Feinstein
#t2008
#cBMC Bioinformatics
#index1220854
#% 
#!
  
#*SynBlast: Assisting the analysis of conserved synteny information.
#@Jörg Lehmann,Peter F. Stadler,Sonja J. Prohaska
#t2008
#cBMC Bioinformatics
#index1220855
#% 
#!
  
#*Rank-based edge reconstruction for scale-free genetic regulatory networks.
#@Guanrao Chen,Peter Larsen,Eyad Almasri,Yang Dai
#t2008
#cBMC Bioinformatics
#index1220856
#% 
#!
  
#*Computational identification of ubiquitylation sites from protein sequences.
#@Chun-Wei Tung,Shinn-Ying Ho
#t2008
#cBMC Bioinformatics
#index1220857
#% 
#!
  
#*Not proper ROC curves as new tool for the analysis of differentially expressed genes in microarray experiments.
#@Stefano Parodi,Vito Pistoia,Marco Muselli
#t2008
#cBMC Bioinformatics
#index1220858
#% 
#!
  
#*The combination approach of SVM and ECOC for powerful identification and classification of transcription factor.
#@Guangyong Zheng,Ziliang Qian,Qing Yang,Chaochun Wei,Lu Xie,Yangyong Zhu,Yixue Li
#t2008
#cBMC Bioinformatics
#index1220859
#% 
#!
  
#*Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis.
#@Shameek Biswas,John D. Storey,Joshua M. Akey
#t2008
#cBMC Bioinformatics
#index1220860
#% 
#!
  
#*VariVis: a visualisation toolkit for variation databases.
#@Timothy D. Smith,Richard G. H. Cotton
#t2008
#cBMC Bioinformatics
#index1220861
#% 
#!
  
#*MetaboMiner - semi-automated identification of metabolites from 2D NMR spectra of complex biofluids.
#@Jianguo Xia,Trent C. Bjorndahl,Peter Tang,David S. Wishart
#t2008
#cBMC Bioinformatics
#index1220862
#% 
#!
  
#*Identification and correction of abnormal, incomplete and mispredicted proteins in public databases.
#@Alinda Nagy,Hédi Hegyi,Krisztina Farkas,Hedvig Tordai,Evelin Kozma,László Bányai,László Patthy
#t2008
#cBMC Bioinformatics
#index1220863
#% 
#!
  
#*Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
#@Jean-François Taly,Antoine Marin,Jean-François Gibrat
#t2008
#cBMC Bioinformatics
#index1220864
#% 
#!
  
#*GraphCrunch: A tool for large network analyses.
#@Tijana Milenkovic,Jason Lai,Natasa Przulj
#t2008
#cBMC Bioinformatics
#index1220865
#% 
#!
  
#*A gene pattern mining algorithm using interchangeable gene sets for prokaryotes.
#@Meng Hu,Kwangmin Choi,Wei Su,Sun Kim,Jiong Yang
#t2008
#cBMC Bioinformatics
#index1220866
#% 
#!
  
#*A Bayesian method for calculating real-time quantitative PCR calibration curves using absolute plasmid DNA standards.
#@Mano Sivaganesan,Shawn Seifring,Manju Varma,Richard A. Haugland,Orin C. Shanks
#t2008
#cBMC Bioinformatics
#index1220867
#% 
#!
  
#*PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes.
#@Christine Fong,Laurence Rohmer,Matthew Radey,Michael Wasnick,Mitchell J. Brittnacher
#t2008
#cBMC Bioinformatics
#index1220868
#% 
#!
  
#*Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking.
#@Jung Soh,Paul M. K. Gordon,Morgan L. Taschuk,Anguo Dong,Andrew C. Ah-Seng,Andrei L. Turinsky,Christoph W. Sensen
#t2008
#cBMC Bioinformatics
#index1220869
#% 
#!
  
#*Assessment of composite motif discovery methods.
#@Kjetil Klepper,Geir Kjetil Sandve,Osman Abul,Jostein Johansen,Finn Drabløs
#t2008
#cBMC Bioinformatics
#index1220870
#% 
#!
  
#*MSDmotif: exploring protein sites and motifs.
#@Adel Golovin,Kim Henrick
#t2008
#cBMC Bioinformatics
#index1220871
#% 
#!
  
#*Chromhome: A rich internet application for accessing comparative chromosome homology maps.
#@Sridevi Nagarajan,Willem Rens,James Stalker,Tony Cox,Malcolm A. Ferguson-Smith
#t2008
#cBMC Bioinformatics
#index1220872
#% 
#!
  
#*High-throughput bioinformatics with the Cyrille2 pipeline system.
#@Mark W. E. J. Fiers,Ate van der Burgt,Erwin Datema,Joost C. W. de Groot,Roeland C. H. J. van Ham
#t2008
#cBMC Bioinformatics
#index1220873
#% 
#!
  
#*MetaMQAP: A meta-server for the quality assessment of protein models.
#@Marcin Pawlowski,Michal J. Gajda,Ryszard Matlak,Janusz M. Bujnicki
#t2008
#cBMC Bioinformatics
#index1220874
#% 
#!
  
#*JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes.
#@Michael Richter,Thierry Lombardot,Ivaylo Kostadinov,Renzo Kottmann,Melissa Beth Duhaime,Jörg Peplies,Frank Oliver Glöckner
#t2008
#cBMC Bioinformatics
#index1220875
#% 
#!
  
#*uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts.
#@Minghui Jiang,James Anderson,Joel Gillespie,Martin Mayne
#t2008
#cBMC Bioinformatics
#index1220876
#% 
#!
  
#*A discriminative method for protein remote homology detection and fold recognition combining Top--grams and latent semantic analysis.
#@Bin Liu,Xiaolong Wang,Lei Lin,Qiwen Dong,Xuan Wang
#t2008
#cBMC Bioinformatics
#index1220877
#% 
#!
  
#*Implementing EM and Viterbi algorithms for Hidden Markov Model in linear memory.
#@Alexander G. Churbanov,Stephen Winters-Hilt
#t2008
#cBMC Bioinformatics
#index1220878
#% 
#!
  
#*Bayesian modeling of recombination events in bacterial populations.
#@Pekka Marttinen,Adam Baldwin,William P. Hanage,Chris Dowson,Eshwar Mahenthiralingam,Jukka Corander
#t2008
#cBMC Bioinformatics
#index1220879
#% 
#!
  
#*The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology.
#@Frédéric Chalmel,Michael Primig
#t2008
#cBMC Bioinformatics
#index1220880
#% 
#!
  
#*Conditional variable importance for random forests.
#@Carolin Strobl,Anne-Laure Boulesteix,Thomas Kneib,Thomas Augustin,Achim Zeileis
#t2008
#cBMC Bioinformatics
#index1220881
#% 
#!
  
#*Mining protein networks for synthetic genetic interactions.
#@Sri R. Paladugu,Shan Zhao,Animesh Ray,Alpan Raval
#t2008
#cBMC Bioinformatics
#index1220882
#% 
#!
  
#*Response projected clustering for direct association with physiological and clinical response data.
#@Sung-Gon Yi,Taesung Park,Jae K. Lee
#t2008
#cBMC Bioinformatics
#index1220883
#% 
#!
  
#*: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information.
#@Patrick Emmanuel Meyer,Frédéric Lafitte,Gianluca Bontempi
#t2008
#cBMC Bioinformatics
#index1220884
#% 
#!
  
#*Compressing DNA sequence databases with coil.
#@W. Timothy J. White,Michael D. Hendy
#t2008
#cBMC Bioinformatics
#index1220885
#% 
#!
  
#*ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS).
#@Thomas D. Otto,Leonardo H. F. Gomes,Marcelo Alves-Ferreira,Antonio Basílio de Miranda,Wim M. Degrave
#t2008
#cBMC Bioinformatics
#index1220886
#% 
#!
  
#*Statistical methodology for the analysis of dye-switch microarray experiments.
#@Tristan Mary-Huard,Julie Aubert,Nadera Mansouri-Attia,Olivier Sandra,Jean-Jacques Daudin
#t2008
#cBMC Bioinformatics
#index1220887
#% 
#!
  
#*CBESW: Sequence Alignment on the Playstation 3.
#@Adrianto Wirawan,Chee Keong Kwoh,Nim Tri Hieu,Bertil Schmidt
#t2008
#cBMC Bioinformatics
#index1220888
#% 
#!
  
#*HAPSIMU: a genetic simulation platform for population-based association studies.
#@Feng Zhang,Jianfeng Liu,Jie Chen,Hong-Wen Deng
#t2008
#cBMC Bioinformatics
#index1220889
#% 
#!
  
#*A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data.
#@Fan Mo,Xu Hong,Feng Gao,Lin Du,Jun Wang,Gilbert S. Omenn,Biaoyang Lin
#t2008
#cBMC Bioinformatics
#index1220890
#% 
#!
  
#*Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles.
#@Ruchi Verma,Ajit Tiwari,Sukhwinder Kaur,Grish C. Varshney,Gajendra P. S. Raghava
#t2008
#cBMC Bioinformatics
#index1220891
#% 
#!
  
#*An analysis of allele sharing in a region of linkage with bipolar affective disorder.
#@Andrew Lee
#t2005
#cBMC Bioinformatics
#index1220892
#% 
#!
  
#*Gene Prospector: An evidence gateway for evaluating potential susceptibility genes and interacting risk factors for human diseases.
#@Wei Yu,Anja Wulf,Tiebin Liu,Muin J. Khoury,Marta Gwinn
#t2008
#cBMC Bioinformatics
#index1220893
#% 
#!
  
#*Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites.
#@Neil F. W. Saunders,Ross I. Brinkworth,Thomas Huber,Bruce E. Kemp,Bostjan Kobe
#t2008
#cBMC Bioinformatics
#index1220894
#% 
#!
  
#*PlasmoDraft: a database of gene function predictions based on postgenomic data.
#@Laurent Bréhélin,Jean-François Dufayard,Olivier Gascuel
#t2008
#cBMC Bioinformatics
#index1220895
#% 
#!
  
#*Using Generalized Procrustes Analysis (GPA) for normalization of cDNA microarray data.
#@Huiling Xiong,Dapeng Zhang,Christopher J. Martyniuk,Vance L. Trudeau,Xuhua Xia
#t2008
#cBMC Bioinformatics
#index1220896
#% 
#!
  
#*Allowing for mandatory covariates in boosting estimation of sparse high-dimensional survival models.
#@Harald Binder,Martin Schumacher
#t2008
#cBMC Bioinformatics
#index1220897
#% 
#!
  
#*Background correction using dinucleotide affinities improves the performance of GCRMA.
#@Raad Z. Gharaibeh,Anthony Fodor,Cynthia Gibas
#t2008
#cBMC Bioinformatics
#index1220898
#% 
#!
  
#*K-OPLS package: Kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space.
#@Max Bylesjö,Mattias Rantalainen,Jeremy K. Nicholson,Elaine Holmes,Johan Trygg
#t2008
#cBMC Bioinformatics
#index1220899
#% 
#!
  
#*High-precision high-coverage functional inference from integrated data sources.
#@Bolan Linghu,Evan S. Snitkin,Dustin T. Holloway,Adam M. Gustafson,Yu Xia,Charles DeLisi
#t2008
#cBMC Bioinformatics
#index1220900
#% 
#!
  
#*A genetic approach for building different alphabets for peptide and protein classification.
#@Loris Nanni,Alessandra Lumini
#t2008
#cBMC Bioinformatics
#index1220901
#% 
#!
  
#*A copula method for modeling directional dependence of genes.
#@Jong-Min Kim,Yoon-Sung Jung,Engin A. Sungur,Kap-Hoon Han,Changyi Park,Insuk Sohn
#t2008
#cBMC Bioinformatics
#index1220902
#% 
#!
  
#*Recovering probabilities for nucleotide trimming processes for T cell receptor TRA and TRG V-J junctions analyzed with IMGT tools.
#@Kevin Bleakley,Marie-Paule Lefranc,Gérard Biau
#t2008
#cBMC Bioinformatics
#index1220903
#% 
#!
  
#*Gene set analyses for interpreting microarray experiments on prokaryotic organisms.
#@Nathan L. Tintle,Aaron A. Best,Matthew DeJongh,Dirk Van Bruggen,Fred Heffron,Steffen Porwollik,Ronald C. Taylor
#t2008
#cBMC Bioinformatics
#index1220904
#% 
#!
  
#*Dinucleotide controlled null models for comparative RNA gene prediction.
#@Tanja Gesell,Stefan Washietl
#t2008
#cBMC Bioinformatics
#index1220905
#% 
#!
  
#*LOSITAN: A workbench to detect molecular adaptation based on a -outlier method.
#@Tiago Antao,Ana Lopes,Ricardo J. Lopes,Albano Beja-Pereira,Gordon Luikart
#t2008
#cBMC Bioinformatics
#index1220906
#% 
#!
  
#*NestedMICA as an ab initio protein motif discovery tool.
#@Mutlu Dogruel,Thomas A. Down,Tim J. P. Hubbard
#t2008
#cBMC Bioinformatics
#index1220907
#% 
#!
  
#*Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network.
#@Matteo Brilli,Alessio Mengoni,Marco Fondi,Marco Bazzicalupo,Pietro Liò,Renato Fani
#t2008
#cBMC Bioinformatics
#index1220908
#% 
#!
  
#*GPAT: Retrieval of genomic annotation from large genomic position datasets.
#@Arnaud Krebs,Mattia Frontini,Làszlò Tora
#t2008
#cBMC Bioinformatics
#index1220909
#% 
#!
  
#*Multiple organism algorithm for finding ultraconserved elements.
#@Scott Christley,Neil F. Lobo,Gregory R. Madey
#t2008
#cBMC Bioinformatics
#index1220910
#% 
#!
  
#*Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score.
#@Shashi Bhushan Pandit,Jeffrey Skolnick
#t2008
#cBMC Bioinformatics
#index1220911
#% 
#!
  
#*Structural assembly of two-domain proteins by rigid-body docking.
#@Tammy M. K. Cheng,Tom L. Blundell,Juan Fernández-Recio
#t2008
#cBMC Bioinformatics
#index1220912
#% 
#!
  
#*Using the information embedded in the testing sample to break the limits caused by the small sample size in microarray-based classification.
#@Manli Zhu,Aleix M. Martínez
#t2008
#cBMC Bioinformatics
#index1220913
#% 
#!
  
#*A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays.
#@Huanying Ge,Chao Cheng,Lei M. Li
#t2008
#cBMC Bioinformatics
#index1220914
#% 
#!
  
#*Assessing probe-specific dye and slide biases in two-color microarray data.
#@Ruixiao Lu,Geun-Cheol Lee,Michael Shultz,Chris Dardick,Kihong Jung,Jirapa Phetsom,Yi Jia,Robert H. Rice,Zelanna Goldberg,Patrick S. Schnable,Pamela C. Ronald,David M. Rocke
#t2008
#cBMC Bioinformatics
#index1220915
#% 
#!
  
#*Envelope: interactive software for modeling and fitting complex isotope distributions.
#@Michael T. Sykes,James R. Williamson
#t2008
#cBMC Bioinformatics
#index1220916
#% 
#!
  
#*PRESTO: Rapid calculation of order statistic distributions and multiple-testing adjusted P-values via permutation for one and two-stage genetic association studies.
#@Brian L. Browning
#t2008
#cBMC Bioinformatics
#index1220917
#% 
#!
  
#*Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data.
#@Peter Li,Juan I. Castrillo,Giles Velarde,Ingo Wassink,Stian Soiland-Reyes,Stuart Owen,David Withers,Tom Oinn,Matthew R. Pocock,Carole A. Goble,Stephen G. Oliver,Douglas B. Kell
#t2008
#cBMC Bioinformatics
#index1220918
#% 
#!
  
#*caBIG VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data.
#@Yitan Zhu,Huai Li,David J. Miller,Zuyi Wang,Jianhua Xuan,Robert Clarke,Eric P. Hoffman,Yue Wang
#t2008
#cBMC Bioinformatics
#index1220919
#% 
#!
  
#*FAF-Drugs2: Free ADME/tox filtering tool to assist drug discovery and chemical biology projects.
#@David Lagorce,Olivier Sperandio,Hervé Galons,Maria A. Miteva,Bruno O. Villoutreix
#t2008
#cBMC Bioinformatics
#index1220920
#% 
#!
  
#*Testing the Coulomb/Accessible Surface Area solvent model for protein stability, ligand binding, and protein design.
#@Marcel Schmidt am Busch,Anne Lopes,Najette Amara,Christine Bathelt,Thomas Simonson
#t2008
#cBMC Bioinformatics
#index1220921
#% 
#!
  
#*Automatic detection of exonic splicing enhancers (ESEs) using SVMs.
#@Britta Mersch,Alexander Gepperth,Sándor Suhai,Agnes Hotz-Wagenblatt
#t2008
#cBMC Bioinformatics
#index1220922
#% 
#!
  
#*The XBabelPhish MAGE-ML and XML Translator.
#@Donald Maier,Farrell Wymore,Gavin Sherlock,Catherine A. Ball
#t2008
#cBMC Bioinformatics
#index1220923
#% 
#!
  
#*A statistical toolbox for metagenomics: assessing functional diversity in microbial communities.
#@Patrick D. Schloss,Jo Handelsman
#t2008
#cBMC Bioinformatics
#index1220924
#% 
#!
  
#*LeARN: a platform for detecting, clustering and annotating non-coding RNAs.
#@Céline Noirot,Christine Gaspin,Thomas Schiex,Jérôme Gouzy
#t2008
#cBMC Bioinformatics
#index1220925
#% 
#!
  
#*Extension of the COG and arCOG databases by amino acid and nucleotide sequences.
#@Florian Meereis,Michael Kaufmann
#t2008
#cBMC Bioinformatics
#index1220926
#% 
#!
  
#*Prediction of specificity-determining residues for small-molecule kinase inhibitors.
#@Daniel R. Caffrey,Elizabeth A. Lunney,Deborah J. Moshinsky
#t2008
#cBMC Bioinformatics
#index1220927
#% 
#!
  
#*Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
#@Mi-Youn Brusniak,Bernd Bodenmiller,David Campbell,Kelly Cooke,James Eddes,Andrew Garbutt,Hollis Lau,Simon Letarte,Lukas N. Mueller,Vagisha Sharma,Olga Vitek,Ning Zhang,Ruedi Aebersold,Julian D. Watts
#t2008
#cBMC Bioinformatics
#index1220928
#% 
#!
  
#*Strategies for measuring evolutionary conservation of RNA secondary structures.
#@Andreas R. Gruber,Stephan H. F. Bernhart,Ivo L. Hofacker,Stefan Washietl
#t2008
#cBMC Bioinformatics
#index1220929
#% 
#!
  
#*Evaluation of GO-based functional similarity measures using protein interaction and expression profile data.
#@Tao Xu,LinFang Du,Yan Zhou
#t2008
#cBMC Bioinformatics
#index1220930
#% 
#!
  
#*Indel PDB: A database of structural insertions and deletions derived from sequence alignments of closely related proteins.
#@Michael Hsing,Artem Cherkasov
#t2008
#cBMC Bioinformatics
#index1220931
#% 
#!
  
#*Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs.
#@Michaël Bekaert,Ivaylo P. Ivanov,John F. Atkins,Pavel V. Baranov
#t2008
#cBMC Bioinformatics
#index1220932
#% 
#!
  
#*PatternLab for proteomics: a tool for differential shotgun proteomics.
#@Paulo C. Carvalho,Juliana S. G. Fischer,Emily I. Chen,John R. Yates III,Valmir C. Barbosa
#t2008
#cBMC Bioinformatics
#index1220933
#% 
#!
  
#*MetaMine - A tool to detect and analyse gene patterns in their environmental context.
#@Uta Bohnebeck,Thierry Lombardot,Renzo Kottmann,Frank Oliver Glöckner
#t2008
#cBMC Bioinformatics
#index1220934
#% 
#!
  
#*Prediction of the outcome of preoperative chemotherapy in breast cancer using DNA probes that provide information on both complete and incomplete responses.
#@René Natowicz,Roberto Incitti,Euler Guimarães Horta,Benoît Charles,Philippe Guinot,Kai Yan,Charles Coutant,Fabrice Andre,Lajos Pusztai,Roman Rouzier
#t2008
#cBMC Bioinformatics
#index1220935
#% 
#!
  
#*Flexible boosting of accelerated failure time models.
#@Matthias Schmid,Torsten Hothorn
#t2008
#cBMC Bioinformatics
#index1220936
#% 
#!
  
#*The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results.
#@John C. Braisted,Srilatha Kuntumalla,Christine Vogel,Edward M. Marcotte,Alan R. Rodrigues,Rong Wang,Shih-Ting Huang,Erik S. Ferlanti,Alexander I. Saeed,Robert D. Fleischmann,Scott N. Peterson,Rembert Pieper
#t2008
#cBMC Bioinformatics
#index1220937
#% 
#!
  
#*Highly accurate sigmoidal fitting of real-time PCR data by introducing a parameter for asymmetry.
#@Andrej-Nikolai Spiess,Caroline Feig,Christian Ritz
#t2008
#cBMC Bioinformatics
#index1220938
#% 
#!
  
#*Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures.
#@Meng Piao Tan,Erin N. Smith,James R. Broach,Christodoulos A. Floudas
#t2008
#cBMC Bioinformatics
#index1220939
#% 
#!
  
#*Effects of dependence in high-dimensional multiple testing problems.
#@Kyung In Kim,Mark A. van de Wiel
#t2008
#cBMC Bioinformatics
#index1220940
#% 
#!
  
#*A Web-based and Grid-enabled dChip version for the analysis of large sets of gene expression data.
#@Luca Corradi,Marco Fato,Ivan Porro,Silvia Scaglione,Livia Torterolo
#t2008
#cBMC Bioinformatics
#index1220941
#% 
#!
  
#*The VirusBanker database uses a Java program to allow flexible searching through sequences.
#@Mathieu Fourment,Mark J. Gibbs
#t2008
#cBMC Bioinformatics
#index1220942
#% 
#!
  
#*Optimizations for the EcoPod field identification tool.
#@Aswath Manoharan,Jeannie A. Stamberger,YuanYuan Yu,Andreas Paepcke
#t2008
#cBMC Bioinformatics
#index1220943
#% 
#!
  
#*Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions.
#@Shu-Yi Su,Jonathan White,David J. Balding,Lachlan J. M. Coin
#t2008
#cBMC Bioinformatics
#index1220944
#% 
#!
  
#*Fuzzy association rules for biological data analysis: A case study on yeast.
#@Francisco J. Lopez,Armando Blanco,Fernando Garcia,Carlos Cano,Antonio Marin
#t2008
#cBMC Bioinformatics
#index1220945
#% 
#!
  
#*A semiparametric modeling framework for potential biomarker discovery and the development of metabonomic profiles.
#@Samiran Ghosh,David F. Grant,Dipak K. Dey,Dennis W. Hill
#t2008
#cBMC Bioinformatics
#index1220946
#% 
#!
  
#*Large-scale identification of polymorphic microsatellites using an approach.
#@Jifeng Tang,Samantha J. Baldwin,Jeanne M. E. Jacobs,C. Gerard van der Linden,Roeland E. Voorrips,Jack A. M. Leunissen,Herman van Eck,Ben Vosman
#t2008
#cBMC Bioinformatics
#index1220947
#% 
#!
  
#*Parameter estimation for robust HMM analysis of ChIP-chip data.
#@Peter Humburg,David Bulger,Glenn Stone
#t2008
#cBMC Bioinformatics
#index1220948
#% 
#!
  
#*Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats.
#@Vladimir Paar,Nenad Pavin,Ivan Basar,Marija Rosandic,Matko Gluncic,Nils Paar
#t2008
#cBMC Bioinformatics
#index1220949
#% 
#!
  
#*Global rank-invariant set normalization (GRSN) to reduce systematic distortions in microarray data.
#@Carl R. Pelz,Molly Kulesz-Martin,Grover Bagby,Rosalie C. Sears
#t2008
#cBMC Bioinformatics
#index1220950
#% 
#!
  
#*How reliably can we predict the reliability of protein structure predictions?
#@István Miklós,Ádám Novák,Balázs Dombai,Jotun Hein
#t2008
#cBMC Bioinformatics
#index1220951
#% 
#!
  
#*Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities.
#@Usman Roshan,Satish Chikkagoudar,Dennis R. Livesay
#t2008
#cBMC Bioinformatics
#index1220952
#% 
#!
  
#*An analytic and systematic framework for estimating metabolic flux ratios from tracer experiments.
#@Ari Rantanen,Juho Rousu,Paula Jouhten,Nicola Zamboni,Hannu Maaheimo,Esko Ukkonen
#t2008
#cBMC Bioinformatics
#index1220953
#% 
#!
  
#*t2prhd: a tool to study the patterns of repeat evolution.
#@Botond Sipos,Kálmán Somogyi,István Andó,Zsolt Pénzes
#t2008
#cBMC Bioinformatics
#index1220954
#% 
#!
  
#*Gene prediction in metagenomic fragments: A large scale machine learning approach.
#@Katharina J. Hoff,Maike Tech,Thomas Lingner,Rolf Daniel,Burkhard Morgenstern,Peter Meinicke
#t2008
#cBMC Bioinformatics
#index1220955
#% 
#!
  
#*Principal components analysis based methodology to identify differentially expressed genes in time-course microarray data.
#@Sudhakar Jonnalagadda,Rajagopalan Srinivasan
#t2008
#cBMC Bioinformatics
#index1220956
#% 
#!
  
#*ParaKMeans: Implementation of a parallelized K-means algorithm suitable for general laboratory use.
#@Piotr Kraj,Ashok Sharma,Nikhil Garge,Robert Podolsky,Richard A. McIndoe
#t2008
#cBMC Bioinformatics
#index1220957
#% 
#!
  
#*Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis.
#@Yanxin Huang,Yongli Bao,Shu Yan Guo,Yan Wang,Chunguang Zhou,Yuxin Li
#t2008
#cBMC Bioinformatics
#index1220958
#% 
#!
  
#*A simplified approach to disulfide connectivity prediction from protein sequences.
#@Marc Vincent,Andrea Passerini,Matthieu Labbé,Paolo Frasconi
#t2008
#cBMC Bioinformatics
#index1220959
#% 
#!
  
#*Interrogating domain-domain interactions with parsimony based approaches.
#@Katia S. Guimarães,Teresa M. Przytycka
#t2008
#cBMC Bioinformatics
#index1220960
#% 
#!
  
#*Fregene: Simulation of realistic sequence-level data in populations and ascertained samples.
#@Marc Chadeau-Hyam,Clive J. Hoggart,Paul F. O'Reilly,John C. Whittaker,Maria De Iorio,David J. Balding
#t2008
#cBMC Bioinformatics
#index1220961
#% 
#!
  
#*PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships.
#@Cuong Than,Derek A. Ruths,Luay Nakhleh
#t2008
#cBMC Bioinformatics
#index1220962
#% 
#!
  
#*Expression profiles of switch-like genes accurately classify tissue and infectious disease phenotypes in model-based classification.
#@Michael Gormley,Aydin Tozeren
#t2008
#cBMC Bioinformatics
#index1220963
#% 
#!
  
#*Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information.
#@Weijun Luo,Kurt D. Hankenson,Peter J. Woolf
#t2008
#cBMC Bioinformatics
#index1220964
#% 
#!
  
#*Computational evaluation of TIS annotation for prokaryotic genomes.
#@Gang-Qing Hu,Xiaobin Zheng,Li-Ning Ju,Huaiqiu Zhu,Zhen-Su She
#t2008
#cBMC Bioinformatics
#index1220965
#% 
#!
  
#*Partial mixture model for tight clustering of gene expression time-course.
#@Yinyin Yuan,Chang-Tsun Li,Roland Wilson
#t2008
#cBMC Bioinformatics
#index1220966
#% 
#!
  
#*MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level.
#@Hélène Chiapello,Annie Gendrault,Christophe Caron,Jérome Blum,Marie-Agnès Petit,Meriem El Karoui
#t2008
#cBMC Bioinformatics
#index1220967
#% 
#!
  
#*SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes.
#@Frédéric Lemoine,Bernard Labedan,Olivier Lespinet
#t2008
#cBMC Bioinformatics
#index1220968
#% 
#!
  
#*A Bayesian calibration model for combining different pre-processing methods in Affymetrix chips.
#@Marta Blangiardo,Sylvia Richardson
#t2008
#cBMC Bioinformatics
#index1220969
#% 
#!
  
#*Towards an automatic classification of protein structural domains based on structural similarity.
#@Vichetra Sam,Chin-Hsien Tai,Jean Garnier,Jean-François Gibrat,Byungkook Lee,Peter J. Munson
#t2008
#cBMC Bioinformatics
#index1220970
#% 
#!
  
#*Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics.
#@Indra Neil Sarkar,Mary G. Egan,Gloria M. Coruzzi,Ernest K. Lee,Robert DeSalle
#t2008
#cBMC Bioinformatics
#index1220971
#% 
#!
  
#*Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells.
#@Atsushi Niida,Andrew D. Smith,Seiya Imoto,Shuichi Tsutsumi,Hiroyuki Aburatani,Michael Q. Zhang,Tetsu Akiyama
#t2008
#cBMC Bioinformatics
#index1220972
#% 
#!
  
#*Piecewise multivariate modelling of sequential metabolic profiling data.
#@Mattias Rantalainen,Olivier Cloarec,Timothy M. D. Ebbels,Torbjörn Lundstedt,Jeremy K. Nicholson,Elaine Holmes,Johan Trygg
#t2008
#cBMC Bioinformatics
#index1220973
#% 
#!
  
#*Clustering exact matches of pairwise sequence alignments by weighted linear regression.
#@Alvaro J. González,Li Liao
#t2008
#cBMC Bioinformatics
#index1220974
#% 
#!
  
#*CrossHybDetector: detection of cross-hybridization events in DNA microarray experiments.
#@Paolo Uva,Emanuele de Rinaldis
#t2008
#cBMC Bioinformatics
#index1220975
#% 
#!
  
#*SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis.
#@Jinho Yoo,Youngbok Lee,Yujung Kim,Sun Young Rha,Yangseok Kim
#t2008
#cBMC Bioinformatics
#index1220976
#% 
#!
  
#*Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease.
#@Rob Jelier,Peter A. C. 't Hoen,Ellen Sterrenburg,Johan T. den Dunnen,Gert-Jan B. van Ommen,Jan A. Kors,Barend Mons
#t2008
#cBMC Bioinformatics
#index1220977
#% 
#!
  
#*Inferring gene expression dynamics via functional regression analysis.
#@Hans-Georg Müller,Jeng-Min Chiou,Xiaoyan Leng
#t2008
#cBMC Bioinformatics
#index1220978
#% 
#!
  
#*Feature selection environment for genomic applications.
#@Fabrício Martins Lopes,David Correa Martins Jr.,Roberto M. Cesar Jr.
#t2008
#cBMC Bioinformatics
#index1220979
#% 
#!
  
#*Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable.
#@Myron Peto,Andrzej Kloczkowski,Vasant Honavar,Robert L. Jernigan
#t2008
#cBMC Bioinformatics
#index1220980
#% 
#!
  
#*Alignment of protein structures in the presence of domain motions.
#@Roberto Mosca,Barbara Brannetti,Thomas R. Schneider
#t2008
#cBMC Bioinformatics
#index1220981
#% 
#!
  
#*A software application for comparing large numbers of high resolution MALDI-FTICR MS spectra demonstrated by searching candidate biomarkers for glioma blood vessel formation.
#@Mark K. Titulaer,Dana A. N. Mustafa,Ivar Siccama,Marco Konijnenburg,Peter C. Burgers,Arno C. Andeweg,Peter A. E. Sillevis Smitt,Johan M. Kros,Theo M. Luider
#t2008
#cBMC Bioinformatics
#index1220982
#% 
#!
  
#*BATS: a Bayesian user-friendly software for Analyzing Time Series microarray experiments.
#@Claudia Angelini,Luisa Cutillo,Daniela De Canditiis,Margherita Mutarelli,Marianna Pensky
#t2008
#cBMC Bioinformatics
#index1220983
#% 
#!
  
#*Ranking analysis of -statistics for microarray data.
#@Yuan-De Tan,Myriam Fornage,Hongyan Xu
#t2008
#cBMC Bioinformatics
#index1220984
#% 
#!
  
#*A fast structural multiple alignment method for long RNA sequences.
#@Yasuo Tabei,Hisanori Kiryu,Taishin Kin,Kiyoshi Asai
#t2008
#cBMC Bioinformatics
#index1220985
#% 
#!
  
#*PDTD: a web-accessible protein database for drug target identification.
#@Zhenting Gao,Honglin Li,Hailei Zhang,Xiaofeng Liu,Ling Kang,Xiaomin Luo,Weiliang Zhu,Kaixian Chen,Xicheng Wang,Hualiang Jiang
#t2008
#cBMC Bioinformatics
#index1220986
#% 
#!
  
#*Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations.
#@Hyunsoo Kim,Haesun Park,Barry L. Drake
#t2008
#cBMC Bioinformatics
#index1220987
#% 
#!
  
#*Volume-based solvation models out-perform area-based models in combined studies of wild-type and mutated protein-protein interfaces.
#@Salim Bougouffa,Jim Warwicker
#t2008
#cBMC Bioinformatics
#index1220988
#% 
#!
  
#*The : A framework for simultaneous model selection and assessment.
#@Martin Eklund,Ola Spjuth,Jarl E. S. Wikberg
#t2008
#cBMC Bioinformatics
#index1220989
#% 
#!
  
#*DBMLoc: a Database of proteins with multiple subcellular localizations.
#@Song Zhang,Xuefeng Xia,Jincheng Shen,Yun Zhou,Zhirong Sun
#t2008
#cBMC Bioinformatics
#index1220990
#% 
#!
  
#*Building blocks for automated elucidation of metabolites: Machine learning methods for NMR prediction.
#@Stefan Kuhn,Björn Egert,Steffen Neumann,Christoph Steinbeck
#t2008
#cBMC Bioinformatics
#index1220991
#% 
#!
  
#*Evaluation of two methods for computational HLA haplotypes inference using a real dataset.
#@Bruno F. Bettencourt,Margarida R. Santos,Raquel N. Fialho,Ana R. Couto,Maria J. Peixoto,João P. Pinheiro,Hélder Spínola,Marian G. Mora,Cristina Santos,António Brehm,Jácome Bruges-Armas
#t2008
#cBMC Bioinformatics
#index1220992
#% 
#!
  
#*CoCoNUT: an efficient system for the comparison and analysis of genomes.
#@Mohamed Ibrahim Abouelhoda,Stefan Kurtz,Enno Ohlebusch
#t2008
#cBMC Bioinformatics
#index1220993
#% 
#!
  
#*Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies.
#@Peter A. DiMaggio Jr.,Scott R. McAllister,Christodoulos A. Floudas,Xiao-Jiang Feng,Joshua D. Rabinowitz,Herschel Rabitz
#t2008
#cBMC Bioinformatics
#index1220994
#% 
#!
  
#*Natural Language Processing in aid of FlyBase curators.
#@Nikiforos Karamanis,Ruth Seal,Ian Lewin,Peter McQuilton,Andreas Vlachos,Caroline Gasperin,Rachel A. Drysdale,Ted Briscoe
#t2008
#cBMC Bioinformatics
#index1220995
#% 
#!
  
#*SeqAn An efficient, generic C++ library for sequence analysis.
#@Andreas Döring,David Weese,Tobias Rausch,Knut Reinert
#t2008
#cBMC Bioinformatics
#index1220996
#% 
#!
  
#*The strength of co-authorship in gene name disambiguation.
#@Richárd Farkas
#t2008
#cBMC Bioinformatics
#index1220997
#% 
#!
  
#*Re-searcher: a system for recurrent detection of homologous protein sequences.
#@Valdemaras Repsys,Mindaugas Margelevicius,Ceslovas Venclovas
#t2008
#cBMC Bioinformatics
#index1220998
#% 
#!
  
#*Compo: composite motif discovery using discrete models.
#@Geir Kjetil Sandve,Osman Abul,Finn Drabløs
#t2008
#cBMC Bioinformatics
#index1220999
#% 
#!
  
#*Detection of protein catalytic residues at high precision using local network properties.
#@Patrick Slama,Ioannis Filippis,Michael Lappe
#t2008
#cBMC Bioinformatics
#index1221000
#% 
#!
  
#*Fast NJ-like algorithms to deal with incomplete distance matrices.
#@Alexis Criscuolo,Olivier Gascuel
#t2008
#cBMC Bioinformatics
#index1221001
#% 
#!
  
#*ExonMiner: Web service for analysis of GeneChip Exon array data.
#@Kazuyuki Numata,Ryo Yoshida,Masao Nagasaki,Ayumu Saito,Seiya Imoto,Satoru Miyano
#t2008
#cBMC Bioinformatics
#index1221002
#% 
#!
  
#*CWRML: representing crop wild relative conservation and use data in XML.
#@Jonathan D. Moore,Shelagh P. Kell,Jose M. Iriondo,Brian V. Ford-Lloyd,Nigel Maxted
#t2008
#cBMC Bioinformatics
#index1221003
#% 
#!
  
#*Universal seeds for cDNA-to-genome comparison.
#@Leming Zhou,Jonathan Stanton,Liliana Florea
#t2008
#cBMC Bioinformatics
#index1221004
#% 
#!
  
#*Data capture in bioinformatics: requirements and experiences with Pedro.
#@Daniel Jameson,Kevin L. Garwood,Christopher Garwood,Tim Booth,Pinar Alper,Stephen G. Oliver,Norman W. Paton
#t2008
#cBMC Bioinformatics
#index1221005
#% 
#!
  
#*Comparison of methods for estimating the nucleotide substitution matrix.
#@Maribeth Oscamou,Daniel McDonald,Von Bing Yap,Gavin A. Huttley,Manuel E. Lladser,Rob Knight
#t2008
#cBMC Bioinformatics
#index1221006
#% 
#!
  
#*Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles.
#@Yin-Jing Tien,Yun-Shien Lee,Han-Ming Wu,Chun-Houh Chen
#t2008
#cBMC Bioinformatics
#index1221007
#% 
#!
  
#*Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.
#@Alexandre Kuhn,Ruth Luthi-Carter,Mauro Delorenzi
#t2008
#cBMC Bioinformatics
#index1221008
#% 
#!
  
#*GMDD: a database of GMO detection methods.
#@Wei Dong,Litao Yang,Kailin Shen,Banghyun Kim,Gijs A. Kleter,Hans J. P. Marvin,Rong Guo,Wanqi Liang,Dabing Zhang
#t2008
#cBMC Bioinformatics
#index1221009
#% 
#!
  
#*Statistical issues in the analysis of Illumina data.
#@Mark J. Dunning,Nuno L. Barbosa-Morais,Andy G. Lynch,Simon Tavaré,Matthew E. Ritchie
#t2008
#cBMC Bioinformatics
#index1221010
#% 
#!
  
#*A comparison of four clustering methods for brain expression microarray data.
#@Alexander L. Richards,Peter Holmans,Michael C. O'Donovan,Michael J. Owen,Lesley Jones
#t2008
#cBMC Bioinformatics
#index1221011
#% 
#!
  
#*DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites.
#@Evert-Jan Blom,Sacha A. F. T. van Hijum,Klaas J. Hofstede,Remko Silvis,Jos B. T. M. Roerdink,Oscar P. Kuipers
#t2008
#cBMC Bioinformatics
#index1221012
#% 
#!
  
#*Deducing topology of protein-protein interaction networks from experimentally measured sub-networks.
#@Ling Yang,Thomas M. Vondriska,Zhangang Han,W. Robb MacLellan,James N. Weiss,Zhilin Qu
#t2008
#cBMC Bioinformatics
#index1221013
#% 
#!
  
#*Sequence based residue depth prediction using evolutionary information and predicted secondary structure.
#@Hua Zhang,Tuo Zhang,Ke Chen,Shiyi Shen,Jishou Ruan,Lukasz A. Kurgan
#t2008
#cBMC Bioinformatics
#index1221014
#% 
#!
  
#*M-BISON: Microarray-based integration of data sources using networks.
#@Bernie J. Daigle Jr.,Russ B. Altman
#t2008
#cBMC Bioinformatics
#index1221015
#% 
#!
  
#*An efficient visualization tool for the analysis of protein mutation matrices.
#@Maria Pamela C. David,Carlo M. Lapid,Vincent Ricardo M. Daria
#t2008
#cBMC Bioinformatics
#index1221016
#% 
#!
  
#*Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes.
#@Josephine F. Reyes,Andrew R. Francis,Mark M. Tanaka
#t2008
#cBMC Bioinformatics
#index1221017
#% 
#!
  
#*An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance.
#@Ana C. Casimiro,Susana Vinga,Ana T. Freitas,Arlindo L. Oliveira
#t2008
#cBMC Bioinformatics
#index1221018
#% 
#!
  
#*Extended Newick: it is time for a standard representation of phylogenetic networks.
#@Gabriel Cardona,Francesc Rosselló,Gabriel Valiente
#t2008
#cBMC Bioinformatics
#index1221019
#% 
#!
  
#*Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides.
#@Jian-Yi Yang,Yu Zhou,Zu-Guo Yu,Vo Anh,Li-Qian Zhou
#t2008
#cBMC Bioinformatics
#index1221020
#% 
#!
  
#*SIGMA: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes.
#@Raj Chari,Bradley P. Coe,Craig Wedseltoft,Marie Benetti,Ian M. Wilson,Emily A. Vucic,Calum MacAulay,Raymond T. Ng,Wan L. Lam
#t2008
#cBMC Bioinformatics
#index1221021
#% 
#!
  
#*Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models.
#@Dawei Liu,Debashis Ghosh,Xihong Lin
#t2008
#cBMC Bioinformatics
#index1221022
#% 
#!
  
#*A comprehensive re-analysis of the Golden Spike data: Towards a benchmark for differential expression methods.
#@Richard D. Pearson
#t2008
#cBMC Bioinformatics
#index1221023
#% 
#!
  
#*Mixture models for analysis of melting temperature data.
#@Christoffer Nellåker,Fredrik Uhrzander,Joanna Tyrcha,Håkan Karlsson
#t2008
#cBMC Bioinformatics
#index1221024
#% 
#!
  
#*New application of intelligent agents in sporadic amyotrophic lateral sclerosis identifies unexpected specific genetic background.
#@Silvana Penco,Massimo Buscema,Maria Cristina Patrosso,Alessandro Marocchi,Enzo Grossi
#t2008
#cBMC Bioinformatics
#index1221025
#% 
#!
  
#*MScanner: a classifier for retrieving Medline citations.
#@Graham L. Poulter,Daniel L. Rubin,Russ B. Altman,Cathal Seoighe
#t2008
#cBMC Bioinformatics
#index1221026
#% 
#!
  
#*A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time.
#@Hua Xu,Lanhao Yang,Michael A. Freitas
#t2008
#cBMC Bioinformatics
#index1221027
#% 
#!
  
#*Subfamily specific conservation profiles for proteins based on n-gram patterns.
#@John K. Vries,Xiong Liu
#t2008
#cBMC Bioinformatics
#index1221028
#% 
#!
  
#*A mixture model approach to sample size estimation in two-sample comparative microarray experiments.
#@Tommy S. Jørstad,Herman Midelfart,Atle M. Bones
#t2008
#cBMC Bioinformatics
#index1221029
#% 
#!
  
#*Mining phenotypes for gene function prediction.
#@Philip Groth,Bertram Weiss,Hans-Dieter Pohlenz,Ulf Leser
#t2008
#cBMC Bioinformatics
#index1221030
#% 
#!
  
#*Polymorphism Interaction Analysis (PIA): a method for investigating complex gene-gene interactions.
#@Leah E. Mechanic,Brian T. Luke,Julie E. Goodman,Stephen J. Chanock,Curtis C. Harris
#t2008
#cBMC Bioinformatics
#index1221031
#% 
#!
  
#*Nuclear staining and relative distance for quantifying epidermal differentiation in biomarker expression profiling.
#@Thora Pommerencke,Thorsten Steinberg,Hartmut Dickhaus,Pascal Tomakidi,Niels Grabe
#t2008
#cBMC Bioinformatics
#index1221032
#% 
#!
  
#*I-TASSER server for protein 3D structure prediction.
#@Yang Zhang
#t2008
#cBMC Bioinformatics
#index1221033
#% 
#!
  
#*Structural descriptor database: a new tool for sequence-based functional site prediction.
#@Juliana S. Bernardes,Jorge H. Fernandez,Ana Tereza R. Vasconcelos
#t2008
#cBMC Bioinformatics
#index1221034
#% 
#!
  
#*C labeling experiments at metabolic nonstationary conditions: An exploratory study.
#@Sebastian Aljoscha Wahl,Katharina Nöh,Wolfgang Wiechert
#t2008
#cBMC Bioinformatics
#index1221035
#% 
#!
  
#*Probe signal correction for differential methylation hybridization experiments.
#@Dustin P. Potter,Pearlly Yan,Tim Hui-Ming Huang,Shili Lin
#t2008
#cBMC Bioinformatics
#index1221036
#% 
#!
  
#*Merging microsatellite data: enhanced methodology and software to combine genotype data for linkage and association analysis.
#@Angela P. Presson,Eric M. Sobel,Paivi Pajukanta,Christopher Plaisier,Daniel E. Weeks,Karolina Åberg,Jeanette C. Papp
#t2008
#cBMC Bioinformatics
#index1221037
#% 
#!
  
#*Probe-specific mixed-model approach to detect copy number differences using multiplex ligation-dependent probe amplification (MLPA).
#@Juan R. González,Josep L. Carrasco,Lluís Armengol,Sergi Villatoro,Lluís Jover,Yutaka Yasui,Xavier Estivill
#t2008
#cBMC Bioinformatics
#index1221038
#% 
#!
  
#*A Java-based tool for the design of classification microarrays.
#@Da Meng,Shira L. Broschat,Douglas R. Call
#t2008
#cBMC Bioinformatics
#index1221039
#% 
#!
  
#*A perl package and an alignment tool for phylogenetic networks.
#@Gabriel Cardona,Francesc Rosselló,Gabriel Valiente
#t2008
#cBMC Bioinformatics
#index1221040
#% 
#!
  
#*Determining gene expression on a single pair of microarrays.
#@Robert W. Reid,Anthony A. Fodor
#t2008
#cBMC Bioinformatics
#index1221041
#% 
#!
  
#*Predicting cancer involvement of genes from heterogeneous data.
#@Ramon Aragues,Chris Sander,Baldo Oliva
#t2008
#cBMC Bioinformatics
#index1221042
#% 
#!
  
#*Testing gene set enrichment for subset of genes: Sub-GSE.
#@Xiting Yan,Fengzhu Sun
#t2008
#cBMC Bioinformatics
#index1221043
#% 
#!
  
#*c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression.
#@Katerina Kechris,Hao Li
#t2008
#cBMC Bioinformatics
#index1221044
#% 
#!
  
#*AnEnPi: identification and annotation of analogous enzymes.
#@Thomas D. Otto,Ana Carolina R. Guimarães,Wim M. Degrave,Antonio Basílio de Miranda
#t2008
#cBMC Bioinformatics
#index1221045
#% 
#!
  
#*Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements.
#@Eva Lange,Ralf Tautenhahn,Steffen Neumann,Clemens Gröpl
#t2008
#cBMC Bioinformatics
#index1221046
#% 
#!
  
#*An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis.
#@Romesh Stanislaus,John M. Arthur,Balaji Rajagopalan,Rick Moerschell,Brian McGlothlen,Jonas S. Almeida
#t2008
#cBMC Bioinformatics
#index1221047
#% 
#!
  
#*CPSP-tools - Exact and complete algorithms for high-throughput 3D lattice protein studies.
#@Martin Mann,Sebastian Will,Rolf Backofen
#t2008
#cBMC Bioinformatics
#index1221048
#% 
#!
  
#*CellProfiler Analyst: data exploration and analysis software for complex image-based screens.
#@Thouis R. Jones,In Han Kang,Douglas B. Wheeler,Robert A. Lindquist,Adam Papallo,David M. Sabatini,Polina Golland,Anne E. Carpenter
#t2008
#cBMC Bioinformatics
#index1221049
#% 
#!
  
#*Using neural networks and evolutionary information in decoy discrimination for protein tertiary structure prediction.
#@Ching-Wai Tan,David T. Jones
#t2008
#cBMC Bioinformatics
#index1221050
#% 
#!
  
#*Discovering biclusters in gene expression data based on high-dimensional linear geometries.
#@Xiangchao Gan,Alan Wee-Chung Liew,Hong Yan
#t2008
#cBMC Bioinformatics
#index1221051
#% 
#!
  
#*Validation of protein models by a neural network approach.
#@Paolo Mereghetti,Maria Luisa Ganadu,Elena Papaleo,Piercarlo Fantucci,Luca De Gioia
#t2008
#cBMC Bioinformatics
#index1221052
#% 
#!
  
#*Virtual screening of GPCRs: An chemogenomics approach.
#@Laurent Jacob,Brice Hoffmann,Véronique Stoven,Jean-Philippe Vert
#t2008
#cBMC Bioinformatics
#index1221053
#% 
#!
  
#*Clustering cancer gene expression data: a comparative study.
#@Marcílio Carlos Pereira de Souto,Ivan G. Costa,Daniel S. A. de Araujo,Teresa Bernarda Ludermir,Alexander Schliep
#t2008
#cBMC Bioinformatics
#index1221054
#% 
#!
  
#*Integration of relational and hierarchical network information for protein function prediction.
#@Xiaoyu Jiang,Naoki Nariai,Martin Steffen,Simon Kasif,Eric D. Kolaczyk
#t2008
#cBMC Bioinformatics
#index1221055
#% 
#!
  
#*SiteSeek: Post-translational modification analysis using adaptive locality-effective kernel methods and new profiles.
#@Paul D. Yoo,Yung Shwen Ho,Bing Bing Zhou,Albert Y. Zomaya
#t2008
#cBMC Bioinformatics
#index1221056
#% 
#!
  
#*Precise detection of rearrangement breakpoints in mammalian chromosomes.
#@Claire Lemaitre,Eric Tannier,Christian Gautier,Marie-France Sagot
#t2008
#cBMC Bioinformatics
#index1221057
#% 
#!
  
#*anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data.
#@Nicola Zamboni,Anne Kümmel,Matthias Heinemann
#t2008
#cBMC Bioinformatics
#index1221058
#% 
#!
  
#*GPR17: Molecular modeling and dynamics studies of the 3-D structure and purinergic ligand binding features in comparison with P2Y receptors.
#@Chiara Parravicini,Graziella Ranghino,Maria P. Abbracchio,Piercarlo Fantucci
#t2008
#cBMC Bioinformatics
#index1221059
#% 
#!
  
#*A new method for 2D gel spot alignment: application to the analysis of large sample sets in clinical proteomics.
#@Sabine Pérès,Laurence Molina,Nicolas Salvetat,Claude Granier,Franck Molina
#t2008
#cBMC Bioinformatics
#index1221060
#% 
#!
  
#*Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach.
#@Firoz Anwar,Syed Murtuza Baker,Taskeed Jabid,Md. Mehedi Hasan,Mohammad Shoyaib,Haseena Khan,Ray Walshe
#t2008
#cBMC Bioinformatics
#index1221061
#% 
#!
  
#*Homology modelling of protein-protein complexes: a simple method and its possibilities and limitations.
#@Guillaume Launay,Thomas Simonson
#t2008
#cBMC Bioinformatics
#index1221062
#% 
#!
  
#*A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins.
#@Armita Sheari,Mehdi Kargar,Ali Katanforoush,Shahriar Arab,Mehdi Sadeghi,Hamid Pezeshk,Changiz Eslahchi,Sayed-Amir Marashi
#t2008
#cBMC Bioinformatics
#index1221063
#% 
#!
  
#*Stability of gene contributions and identification of outliers in multivariate analysis of microarray data.
#@Florent Baty,Daniel Jaeger,Frank Preiswerk,Martin M. Schumacher,Martin H. Brutsche
#t2008
#cBMC Bioinformatics
#index1221064
#% 
#!
  
#*Abbreviation definition identification based on automatic precision estimates.
#@Sunghwan Sohn,Donald C. Comeau,Won Kim,W. John Wilbur
#t2008
#cBMC Bioinformatics
#index1221065
#% 
#!
  
#*A general approach to simultaneous model fitting and variable elimination in response models for biological data with many more variables than observations.
#@Harri T. Kiiveri
#t2008
#cBMC Bioinformatics
#index1221066
#% 
#!
  
#*Term-tissue specific models for prediction of gene ontology biological processes using transcriptional profiles of aging in drosophila melanogaster.
#@Wensheng Zhang,Sige Zou,Jiuzhou Song
#t2008
#cBMC Bioinformatics
#index1221067
#% 
#!
  
#*Improving protein function prediction methods with integrated literature data.
#@Aaron Gabow,Sonia M. Leach,William A. Baumgartner Jr.,Lawrence Hunter,Debra Goldberg
#t2008
#cBMC Bioinformatics
#index1221068
#% 
#!
  
#*Genome Environment Browser (GEB): a dynamic browser for visualising high-throughput experimental data in the context of genome features.
#@Derek Huntley,Y. Amy Tang,Tatyana B. Nesterova,Sarah Butcher,Neil Brockdorff
#t2008
#cBMC Bioinformatics
#index1221069
#% 
#!
  
#*Microarray-based gene set analysis: a comparison of current methods.
#@Sarah Song,Michael A. Black
#t2008
#cBMC Bioinformatics
#index1221070
#% 
#!
  
#*catmap: Case-control And TDT Meta-Analysis Package.
#@Kristin K. Nicodemus
#t2008
#cBMC Bioinformatics
#index1221071
#% 
#!
  
#*PEPOP: Computational design of immunogenic peptides.
#@Violaine Moreau,Cécile Fleury,Dominique Piquer,Christophe Nguyen,Nicolas Novali,Sylvie Villard,Daniel Laune,Claude Granier,Franck Molina
#t2008
#cBMC Bioinformatics
#index1221072
#% 
#!
  
#*Methods for evaluating gene expression from Affymetrix microarray datasets.
#@Ning Jiang,Lindsey J. Leach,Xiaohua Hu,Elena Potokina,Tianye Jia,Arnis Druka,Robbie Waugh,Michael J. Kearsey,Zewei W. Luo
#t2008
#cBMC Bioinformatics
#index1221073
#% 
#!
  
#*The meaning of alignment: lessons from structural diversity.
#@Walter Pirovano,K. Anton Feenstra,Jaap Heringa
#t2008
#cBMC Bioinformatics
#index1221074
#% 
#!
  
#*Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks.
#@David A. Nix,Samir J. Courdy,Kenneth M. Boucher
#t2008
#cBMC Bioinformatics
#index1221075
#% 
#!
  
#*: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments.
#@Rainer Merkl,Matthias Zwick
#t2008
#cBMC Bioinformatics
#index1221076
#% 
#!
  
#*Gene set enrichment analysis for non-monotone association and multiple experimental categories.
#@Rongheng Lin,Shuangshuang Dai,Richard D. Irwin,Alexandra N. Heinloth,Gary A. Boorman,Leping Li
#t2008
#cBMC Bioinformatics
#index1221077
#% 
#!
  
#*OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.
#@Lawrence Hunter,Zhiyong Lu,James Firby,William A. Baumgartner Jr.,Helen L. Johnson,Philip V. Ogren,K. Bretonnel Cohen
#t2008
#cBMC Bioinformatics
#index1221078
#% 
#!
  
#*Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of -spaced amino acid pairs.
#@Yong-Zi Chen,Yu-Rong Tang,Zhi-Ya Sheng,Ziding Zhang
#t2008
#cBMC Bioinformatics
#index1221079
#% 
#!
  
#*RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays.
#@Romesh Stanislaus,Mark Carey,Helena F. Deus,Kevin R. Coombes,Bryan T. J. Hennessy,Gordon B. Mills,Jonas S. Almeida
#t2008
#cBMC Bioinformatics
#index1221080
#% 
#!
  
#*Supervised Lowess normalization of comparative genome hybridization data - application to lactococcal strain comparisons.
#@Sacha A. F. T. van Hijum,Richard J. S. Baerends,Aldert L. Zomer,Harma A. Karsens,Victoria Martin-Requena,Oswaldo Trelles,Jan Kok,Oscar P. Kuipers
#t2008
#cBMC Bioinformatics
#index1221081
#% 
#!
  
#*Presenting and exploring biological pathways with PathVisio.
#@Martijn P. van Iersel,Thomas Kelder,Alexander R. Pico,Kristina Hanspers,Susan Coort,Bruce R. Conklin,Chris T. A. Evelo
#t2008
#cBMC Bioinformatics
#index1221082
#% 
#!
  
#*A novel application of quantile regression for identification of biomarkers exemplified by equine cartilage microarray data.
#@Liping Huang,Wenying Zhu,Christopher P. Saunders,James N. MacLeod,Mai Zhou,Arnold J. Stromberg,Arne C. Bathke
#t2008
#cBMC Bioinformatics
#index1221083
#% 
#!
  
#*A new method for class prediction based on signed-rank algorithms applied to Affymetrixmicroarray experiments.
#@Thierry Rème,Dirk Hose,John De Vos,Aurélien Vassal,Pierre-Olivier Poulain,Véronique Pantesco,Hartmut Goldschmidt,Bernard Klein
#t2008
#cBMC Bioinformatics
#index1221084
#% 
#!
  
#*Prediction of enzyme function by combining sequence similarity and protein interactions.
#@Jordi Espadaler,Narayanan Eswar,Enrique Querol,Francesc X. Avilés,Andrej Sali,Marc A. Martí-Renom,Baldomero Oliva
#t2008
#cBMC Bioinformatics
#index1221085
#% 
#!
  
#*PredGPI: a GPI-anchor predictor.
#@Andrea Pierleoni,Pier Luigi Martelli,Rita Casadio
#t2008
#cBMC Bioinformatics
#index1221086
#% 
#!
  
#*Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data.
#@Michael J. Gilchrist,Mikkel B. Christensen,Richard Harland,Nicolas Pollet,James C. Smith,Naoto Ueno,Nancy Papalopulu
#t2008
#cBMC Bioinformatics
#index1221087
#% 
#!
  
#*mtDNAmanager: a Web-based tool for the management and quality analysis of mitochondrial DNA control-region sequences.
#@Hwan Young Lee,Injee Song,Eunho Ha,Sung-Bae Cho,Woo Ick Yang,Kyoung-Jin Shin
#t2008
#cBMC Bioinformatics
#index1221088
#% 
#!
  
#*A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences.
#@Claudia Chica,Alberto Labarga,Cathryn M. Gould,Rodrigo Lopez,Toby J. Gibson
#t2008
#cBMC Bioinformatics
#index1221089
#% 
#!
  
#*Corpus annotation for mining biomedical events from literature.
#@Jin-Dong Kim,Tomoko Ohta,Jun-ichi Tsujii
#t2008
#cBMC Bioinformatics
#index1221090
#% 
#!
  
#*ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequences.
#@Hisakazu Iwama,Yukio Hori,Kensuke Matsumoto,Koji Murao,Toshihiko Ishida
#t2008
#cBMC Bioinformatics
#index1221091
#% 
#!
  
#*Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain.
#@Christopher Lau,Lydia Ng,Carol Thompson,Sayan D. Pathak,Leonard Kuan,Allan Jones,Michael Hawrylycz
#t2008
#cBMC Bioinformatics
#index1221092
#% 
#!
  
#*CMA - a comprehensive Bioconductor package for supervised classification with high dimensional data.
#@Martin Slawski,Martin Daumer,Anne-Laure Boulesteix
#t2008
#cBMC Bioinformatics
#index1221093
#% 
#!
  
#*Prediction of beta-turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments.
#@Ce Zheng,Lukasz A. Kurgan
#t2008
#cBMC Bioinformatics
#index1221094
#% 
#!
  
#*Optimal neighborhood indexing for protein similarity search.
#@Pierre Peterlongo,Laurent Noé,Dominique Lavenier,Van Hoa Nguyen,Gregory Kucherov,Mathieu Giraud
#t2008
#cBMC Bioinformatics
#index1221095
#% 
#!
  
#*SPRINT: A new parallel framework for R.
#@Jon Hill,Matthew Hambley,Thorsten Forster,Muriel Mewissen,Terence M. Sloan,Florian Scharinger,Arthur S. Trew,Peter Ghazal
#t2008
#cBMC Bioinformatics
#index1221096
#% 
#!
  
#*ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization.
#@Wen-Lin Huang,Chun-Wei Tung,Shih-Wen Ho,Shiow-Fen Hwang,Shinn-Ying Ho
#t2008
#cBMC Bioinformatics
#index1221097
#% 
#!
  
#*Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction.
#@William S. Bush,Todd L. Edwards,Scott M. Dudek,Brett A. McKinney,Marylyn D. Ritchie
#t2008
#cBMC Bioinformatics
#index1221098
#% 
#!
  
#*Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment scores.
#@Olivier Bastien,Eric Maréchal
#t2008
#cBMC Bioinformatics
#index1221099
#% 
#!
  
#*Shape-IT: new rapid and accurate algorithm for haplotype inference.
#@Olivier Delaneau,Cédric Coulonges,Jean-François Zagury
#t2008
#cBMC Bioinformatics
#index1221100
#% 
#!
  
#*Improving peptide-MHC class I binding prediction for unbalanced datasets.
#@Ana Paula Sales,Georgia D. Tomaras,Thomas B. Kepler
#t2008
#cBMC Bioinformatics
#index1221101
#% 
#!
  
#*Enhancing the prediction of protein pairings between interacting families using orthology information.
#@José M. G. Izarzugaza,David de Juan,Carles Pons,Florencio Pazos,Alfonso Valencia
#t2008
#cBMC Bioinformatics
#index1221102
#% 
#!
  
#*SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data.
#@Ramón Díaz-Uriarte
#t2008
#cBMC Bioinformatics
#index1221103
#% 
#!
  
#*An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions.
#@Alexander Churkin,Danny Barash
#t2008
#cBMC Bioinformatics
#index1221104
#% 
#!
  
#*Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements.
#@Qingwu Yang,Sing-Hoi Sze
#t2008
#cBMC Bioinformatics
#index1221105
#% 
#!
  
#*RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences.
#@James K. Hane,Richard P. Oliver
#t2008
#cBMC Bioinformatics
#index1221106
#% 
#!
  
#*Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection.
#@Inkyung Jung,Jaehyung Lee,Soo-Young Lee,Dongsup Kim
#t2008
#cBMC Bioinformatics
#index1221107
#% 
#!
  
#*Identifying differential correlation in gene/pathway combinations.
#@Rosemary Braun,Leslie Cope,Giovanni Parmigiani
#t2008
#cBMC Bioinformatics
#index1221108
#% 
#!
  
#*Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios.
#@Johan Staaf,Johan Vallon-Christersson,David Lindgren,Gunnar Juliusson,Richard Rosenquist,Mattias Höglund,Åke Borg,Markus Ringnér
#t2008
#cBMC Bioinformatics
#index1221109
#% 
#!
  
#*Discovery of dominant and dormant genes from expression data using a novel generalization of SNR for multi-class problems.
#@Yu-Shuen Tsai,Chin-Teng Lin,George C. Tseng,I-Fang Chung,Nikhil R. Pal
#t2008
#cBMC Bioinformatics
#index1221110
#% 
#!
  
#*Integrated multi-level quality control for proteomic profiling studies using mass spectrometry.
#@David A. Cairns,David N. Perkins,Anthea J. Stanley,Douglas Thompson,Jennifer H. Barrett,Peter J. Selby,Rosamonde E. Banks
#t2008
#cBMC Bioinformatics
#index1221111
#% 
#!
  
#*AccPbFRET: An ImageJ plugin for semi-automatic, fully corrected analysis of acceptor photobleaching FRET images.
#@János Roszik,János Szöllösi,György Vereb
#t2008
#cBMC Bioinformatics
#index1221112
#% 
#!
  
#*Impact of residue accessible surface area on the prediction of protein secondary structures.
#@Amir Momen-Roknabadi,Mehdi Sadeghi,Hamid Pezeshk,Sayed-Amir Marashi
#t2008
#cBMC Bioinformatics
#index1221113
#% 
#!
  
#*SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences.
#@Lukasz A. Kurgan,Krzysztof J. Cios,Ke Chen
#t2008
#cBMC Bioinformatics
#index1221114
#% 
#!
  
#*Word correlation matrices for protein sequence analysis and remote homology detection.
#@Thomas Lingner,Peter Meinicke
#t2008
#cBMC Bioinformatics
#index1221115
#% 
#!
  
#*Statistical tools for transgene copy number estimation based on real-time PCR.
#@Joshua S. Yuan,Jason N. Burris,Nathan R. Stewart,Ayalew Mentewab,C. Neal Stewart Jr.
#t2007
#cBMC Bioinformatics
#index1221116
#% 
#!
  
#*Current approaches to gene regulatory network modelling.
#@Thomas Schlitt,Alvis Brazma
#t2007
#cBMC Bioinformatics
#index1221117
#% 
#!
  
#*Gene expression changes induced by the tumorigenic pyrrolizidine alkaloid riddelliine in liver of Big Blue rats.
#@Nan Mei,Lei Guo,Ruqing Liu,James C. Fuscoe,Tao Chen
#t2007
#cBMC Bioinformatics
#index1221118
#% 
#!
  
#*A mixture of feature experts approach for protein-protein interaction prediction.
#@Yanjun Qi,Judith Klein-Seetharaman,Ziv Bar-Joseph
#t2007
#cBMC Bioinformatics
#index1221119
#% 
#!
  
#*Systems biology approach for mapping the response of human urothelial cells to infection by .
#@Mikhail G. Dozmorov,Kimberly D. Kyker,Ricardo Saban,Nathan Shankar,Arto S. Baghdayan,Michael Centola,Robert E. Hurst
#t2007
#cBMC Bioinformatics
#index1221120
#% 
#!
  
#*The 2006 Automated Function Prediction Meeting.
#@Ana P. C. Rodrigues,Barry J. Grant,Adam Godzik,Iddo Friedberg
#t2007
#cBMC Bioinformatics
#index1221121
#% 
#!
  
#*Advancing translational research with the Semantic Web.
#@Alan Ruttenberg,Tim Clark,William Bug,Matthias Samwald,Olivier Bodenreider,Helen Chen,Donald Doherty,Kerstin Forsberg,Yong Gao,Vipul Kashyap,June Kinoshita,Joanne Luciano,M. Scott Marshall,Chimezie Ogbuji,Jonathan Rees,Susie Stephens,Gwendolyn T. Wong,Elizabeth Wu,Davide Zaccagnini,Tonya Hongsermeier,Eric Neumann,Ivan Herman,Kei-Hoi Cheung
#t2007
#cBMC Bioinformatics
#index1221122
#% 
#!
  
#*ProtNet: a tool for stochastic simulations of protein interaction networks dynamics.
#@Massimo Bernaschi,Filippo Castiglione,Alessandra Ferranti,Caius Gavrila,Michele Tinti,Gianni Cesareni
#t2007
#cBMC Bioinformatics
#index1221123
#% 
#!
  
#*Simultaneous identification of long similar substrings in large sets of sequences.
#@Jürgen Kleffe,Friedrich Möller,Burghardt Wittig
#t2007
#cBMC Bioinformatics
#index1221124
#% 
#!
  
#*Improved functional prediction of proteins by learning kernel combinations in multilabel settings.
#@Volker Roth,Bernd Fischer
#t2007
#cBMC Bioinformatics
#index1221125
#% 
#!
  
#*Framework for a Protein Ontology.
#@Darren A. Natale,Cecilia N. Arighi,Winona C. Barker,Judith A. Blake,Ti-Cheng Chang,Zhang-Zhi Hu,Hongfang Liu,Barry Smith,Cathy H. Wu
#t2007
#cBMC Bioinformatics
#index1221126
#%674631
#%959525
#!
  
#*Highlights from the Third International Society for Computational Biology Student Council Symposium at the Fifteenth Annual International Conference on Intelligent Systems for Molecular Biology.
#@Nils Gehlenborg,Manuel Corpas,Sarath Chandra Janga
#t2007
#cBMC Bioinformatics
#index1221127
#% 
#!
  
#*The BioPrompt-box: an ontology-based clustering tool for searching in biological databases.
#@Claudio Corsi,Paolo Ferragina,Roberto Marangoni
#t2007
#cBMC Bioinformatics
#index1221128
#% 
#!
  
#*Logical modelling and analysis of the budding yeast cell cycle.
#@Adrien Fauré,Claudine Chaouiya,Andrea Ciliberto,Denis Thieffry
#t2007
#cBMC Bioinformatics
#index1221129
#% 
#!
  
#*Bayesian model-based inference of transcription factor activity.
#@Simon Rogers,Raya Khanin,Mark Girolami
#t2007
#cBMC Bioinformatics
#index1221130
#% 
#!
  
#*Automatic delineation of malignancy in histopathological head and neck slides.
#@Mutlu Mete,Xiaowei Xu,Chun-Yang Fan,Gal Shafirstein
#t2007
#cBMC Bioinformatics
#index1221131
#% 
#!
  
#*Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm .
#@Mehdi Pirooznia,Ping Gong,Xin Guan,Laura S. Inouye,Kuan Yang,Edward J. Perkins,Youping Deng
#t2007
#cBMC Bioinformatics
#index1221132
#% 
#!
  
#*Dissecting complex transcriptional responses using pathway-level scores based on prior information.
#@Harmen J. Bussemaker,Lucas D. Ward,André Boorsma
#t2007
#cBMC Bioinformatics
#index1221133
#% 
#!
  
#*GO for gene documents.
#@Padmini Srinivasan,Xin Ying Qiu
#t2007
#cBMC Bioinformatics
#index1221134
#%166
#%96034
#%594838
#%595737
#%642226
#%936755
#%937499
#!
  
#*Clustering protein environments for function prediction: finding PROSITE motifs in 3D.
#@Sungroh Yoon,Jessica C. Ebert,Eui-Young Chung,Giovanni De Micheli,Russ B. Altman
#t2007
#cBMC Bioinformatics
#index1221135
#% 
#!
  
#*Time-series alignment by non-negative multiple generalized canonical correlation analysis.
#@Bernd Fischer,Volker Roth,Joachim M. Buhmann
#t2007
#cBMC Bioinformatics
#index1221136
#%766216
#%438405
#%984932
#!
  
#*ESTuber db: an online database for EST sequences.
#@Barbara Lazzari,Andrea Caprera,Cristian Cosentino,Alessandra Stella,Luciano Milanesi,Angelo Viotti
#t2007
#cBMC Bioinformatics
#index1221137
#% 
#!
  
#*A stochastic differential equation model for transcriptional regulatory networks.
#@Adriana Climescu-Haulica,Michelle D. Quirk
#t2007
#cBMC Bioinformatics
#index1221138
#% 
#!
  
#*Accurate splice site prediction using support vector machines.
#@Sören Sonnenburg,Gabriele Schweikert,Petra Philips,Jonas Behr,Gunnar Rätsch
#t2007
#cBMC Bioinformatics
#index1221139
#% 
#!
  
#*ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding.
#@Adam A. Margolin,Teresa Palomero,Adolfo A. Ferrando,Andrea Califano,Gustavo Stolovitzky
#t2007
#cBMC Bioinformatics
#index1221140
#% 
#!
  
#*Nanopore-based kinetics analysis of individual antibody-channel and antibody-antigen interactions.
#@Stephen Winters-Hilt,Eric Morales,Iftekhar Amin,Alexander Stoyanov
#t2007
#cBMC Bioinformatics
#index1221141
#% 
#!
  
#*Inferring biological networks with output kernel trees.
#@Pierre Geurts,Nizar Touleimat,Marie Dutreix,Florence d'Alché-Buc
#t2007
#cBMC Bioinformatics
#index1221142
#% 
#!
  
#*Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees.
#@Xiaoyu Chen,Mathieu Blanchette
#t2007
#cBMC Bioinformatics
#index1221143
#% 
#!
  
#*Using structural motif descriptors for sequence-based binding site prediction.
#@Andreas Henschel,Christof Winter,Wan Kyu Kim,Michael Schroeder
#t2007
#cBMC Bioinformatics
#index1221144
#% 
#!
  
#*Probabilistic modeling and machine learning in structural and systems biology.
#@Samuel Kaski,Juho Rousu,Esko Ukkonen
#t2007
#cBMC Bioinformatics
#index1221145
#% 
#!
  
#*A new pairwise kernel for biological network inference with support vector machines.
#@Jean-Philippe Vert,Jian Qiu,William Stafford Noble
#t2007
#cBMC Bioinformatics
#index1221146
#% 
#!
  
#*Homology modeling of a voltage-gated potassium channel (human K7.1).
#@Alexandr Goncearenco,Yasmin Karimi-Nejad,Konrad Koehler
#t2007
#cBMC Bioinformatics
#index1221147
#% 
#!
  
#*BioCAD: an information fusion platform for bio-network inference and analysis.
#@Doheon Lee,Sangwoo Kim,Younghoon Kim
#t2007
#cBMC Bioinformatics
#index1221148
#%167939
#%551480
#%558911
#%763119
#%764421
#%764694
#%765774
#%961966
#%1009568
#!
  
#*ProtQuant: a tool for the label-free quantification of MudPIT proteomics data.
#@Susan M. Bridges,G. Bryce Magee,Nan Wang,W. Paul Williams,Shane C. Burgess,Bindu Nanduri
#t2007
#cBMC Bioinformatics
#index1221149
#% 
#!
  
#*From biophysics to evolutionary genetics: statistical aspects of gene regulation.
#@Michael Lässig
#t2007
#cBMC Bioinformatics
#index1221150
#% 
#!
  
#*A comparison study on algorithms of detecting long forms for short forms in biomedical text.
#@Manabu Torii,Zhang-Zhi Hu,Min Song,Cathy H. Wu,Hongfang Liu
#t2007
#cBMC Bioinformatics
#index1221151
#% 
#!
  
#*A novel Bayesian approach to quantify clinical variables and to determine their spectroscopic counterparts in H NMR metabonomic data.
#@Aki Vehtari,Ville-Petteri Mäkinen,Pasi Soininen,Petri Ingman,Sanna M. Mäkelä,Markku J. Savolainen,Minna L. Hannuksela,Kimmo Kaski,Mika Ala-Korpela
#t2007
#cBMC Bioinformatics
#index1221152
#% 
#!
  
#*T2DM-GeneMiner a web resource for meta-analysis and marker identification for type 2 diabetes mellitus.
#@Axel Rasche,Ralf Herwig
#t2007
#cBMC Bioinformatics
#index1221153
#% 
#!
  
#*Combining dissimilarity based classifiers for cancer prediction using gene expression profiles.
#@Ángela Blanco,Manuel Martín-Merino,Javier De Las Rivas
#t2007
#cBMC Bioinformatics
#index1221154
#% 
#!
  
#*Multiple alignment and structure prediction of non-coding RNA sequences.
#@Stinus Lindgreen,Paul P. Gardner,Anders Krogh
#t2007
#cBMC Bioinformatics
#index1221155
#% 
#!
  
#*Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks.
#@Peng Li,Chaoyang Zhang,Edward J. Perkins,Ping Gong,Youping Deng
#t2007
#cBMC Bioinformatics
#index1221156
#% 
#!
  
#*Data handling strategies for high throughput pyrosequencers.
#@Gabriele A. Trombetti,Raoul J. P. Bonnal,Ermanno Rizzi,Gianluca De Bellis,Luciano Milanesi
#t2007
#cBMC Bioinformatics
#index1221157
#% 
#!
  
#*The alpha-Hemolysin nanopore transduction detector - single-molecule binding studies and immunological screening of antibodies and aptamers.
#@Stephen Winters-Hilt
#t2007
#cBMC Bioinformatics
#index1221158
#% 
#!
  
#*Learning biophysically-motivated parameters for alpha helix prediction.
#@Blaise Gassend,Charles W. O'Donnell,William Thies,Andrew Lee,Marten van Dijk,Srinivas Devadas
#t2007
#cBMC Bioinformatics
#index1221159
#% 
#!
  
#*Model order selection for bio-molecular data clustering.
#@Alberto Bertoni,Giorgio Valentini
#t2007
#cBMC Bioinformatics
#index1221160
#% 
#!
  
#*p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining prediction and microarray data.
#@Elisabetta Sbisà,Domenico Catalano,Giorgio Grillo,Flavio Licciulli,Antonio Turi,Sabino Liuni,Graziano Pesole,Anna De Grassi,Mariano Francesco Caratozzolo,Anna Maria D'Erchia,Beatriz Navarro,Apollonia Tullo,Cecilia Saccone,Andreas Gisel
#t2007
#cBMC Bioinformatics
#index1221161
#% 
#!
  
#*Cross platform microarray analysis for robust identification of differentially expressed genes.
#@Roberta Bosotti,Giuseppe Locatelli,Sandra Healy,Emanuela Scacheri,Luca Sartori,Ciro Mercurio,Raffaele Calogero,Antonella Isacchi
#t2007
#cBMC Bioinformatics
#index1221162
#% 
#!
  
#*A computational approach for detecting peptidases and their specific inhibitors at the genome level.
#@Lisa Bartoli,Remo Calabrese,Piero Fariselli,Damiano G. Mita,Rita Casadio
#t2007
#cBMC Bioinformatics
#index1221163
#% 
#!
  
#*NIPS workshop on New Problems and Methods in Computational Biology.
#@Gal Chechik,Christina S. Leslie,William Stafford Noble,Gunnar Rätsch,Quaid Morris,Koji Tsuda
#t2007
#cBMC Bioinformatics
#index1221164
#% 
#!
  
#*Proceedings of the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society.
#@Dawn Wilkins,Yuriy Gusev,Raja Loganantharaj,Susan Bridges,Stephen Winters-Hilt,Jonathan D. Wren
#t2007
#cBMC Bioinformatics
#index1221165
#% 
#!
  
#*The Otto Warburg International Summer School and Workshop on Networks and Regulation.
#@Peter F. Arndt,Martin Vingron
#t2007
#cBMC Bioinformatics
#index1221166
#% 
#!
  
#*Evaluation of high-throughput functional categorization of human disease genes.
#@James L. Chen,Yang Liu,Lee T. Sam,Jianrong Li,Yves A. Lussier
#t2007
#cBMC Bioinformatics
#index1221167
#% 
#!
  
#*Mining expression-dependent modules in the human interaction network.
#@Elisabeth Georgii,Sabine Dietmann,Takeaki Uno,Philipp Pagel,Koji Tsuda
#t2007
#cBMC Bioinformatics
#index1221168
#% 
#!
  
#*Graphs in molecular biology.
#@Wolfgang Huber,Vincent J. Carey,Li Long,Seth Falcon,Robert Gentleman
#t2007
#cBMC Bioinformatics
#index1221169
#% 
#!
  
#*e-Science and biological pathway semantics.
#@Joanne S. Luciano,Robert D. Stevens
#t2007
#cBMC Bioinformatics
#index1221170
#% 
#!
  
#*Significance analysis of microarray transcript levels in time series experiments.
#@Barbara Di Camillo,Gianna Toffolo,Sreekumaran K. Nair,Laura J. Greenlund,Claudio Cobelli
#t2007
#cBMC Bioinformatics
#index1221171
#% 
#!
  
#*Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics.
#@Rita Casadio,Manuela Helmer-Citterich,Graziano Pesole
#t2007
#cBMC Bioinformatics
#index1221172
#% 
#!
  
#*Towards validating the hypothesis of phylogenetic profiling.
#@Raja Loganantharaj,Mazen Atwi
#t2007
#cBMC Bioinformatics
#index1221173
#% 
#!
  
#*Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.
#@Davide Rambaldi,Barbara Felice,Viviane Praz,Philipp Bucher,Davide Cittaro,Alessandro Guffanti
#t2007
#cBMC Bioinformatics
#index1221174
#% 
#!
  
#*SVM clustering.
#@Stephen Winters-Hilt,Sam Merat
#t2007
#cBMC Bioinformatics
#index1221175
#% 
#!
  
#*The MEPS server for identifying protein conformational epitopes.
#@Tiziana Castrignanò,Paolo D'Onorio De Meo,Danilo Carrabino,Massimiliano Orsini,Matteo Floris,Anna Tramontano
#t2007
#cBMC Bioinformatics
#index1221176
#% 
#!
  
#*A procedure to decompose high resolution mass spectra.
#@Nicola Barbarini,Paolo Magni,Riccardo Bellazzi
#t2007
#cBMC Bioinformatics
#index1221177
#% 
#!
  
#*A survey of DNA motif finding algorithms.
#@Modan K. Das,Ho-Kwok Dai
#t2007
#cBMC Bioinformatics
#index1221178
#% 
#!
  
#*On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common Pathway genes.
#@Marco Fondi,Matteo Brilli,Renato Fani
#t2007
#cBMC Bioinformatics
#index1221179
#% 
#!
  
#*AlzPharm: integration of neurodegeneration data using RDF.
#@Hugo Y. K. Lam,Luis N. Marenco,Tim Clark,Yong Gao,June Kinoshita,Gordon M. Shepherd,Perry L. Miller,Elizabeth Wu,Gwendolyn T. Wong,Nian Liu,Chiquito J. Crasto,Thomas M. Morse,Susie Stephens,Kei-Hoi Cheung
#t2007
#cBMC Bioinformatics
#index1221180
#% 
#!
  
#*Using indirect protein interactions for the prediction of Gene Ontology functions.
#@Hon Nian Chua,Wing-Kin Sung,Limsoon Wong
#t2007
#cBMC Bioinformatics
#index1221181
#% 
#!
  
#*Learning causal networks from systems biology time course data: an effective model selection procedure for the vector autoregressive process.
#@Rainer Opgen-Rhein,Korbinian Strimmer
#t2007
#cBMC Bioinformatics
#index1221182
#% 
#!
  
#*Gene function prediction based on genomic context clustering and discriminative learning: an application to bacteriophages.
#@Jason Li,Saman K. Halgamuge,Christopher I. Kells,Sen-Lin Tang
#t2007
#cBMC Bioinformatics
#index1221183
#% 
#!
  
#*The Genopolis Microarray Database.
#@Andrea Splendiani,Marco Brandizi,Gael Even,Ottavio Beretta,Norman Pavelka,Mattia Pelizzola,Manuel Mayhaus,Maria Foti,Giancarlo Mauri,Paola Ricciardi-Castagnoli
#t2007
#cBMC Bioinformatics
#index1221184
#% 
#!
  
#*Shared transcriptional correlations in seed formation and in plants response to drought.
#@Maital Ashkenazi,Menachem Moshelion
#t2007
#cBMC Bioinformatics
#index1221185
#% 
#!
  
#*Metabonomics evaluations of age-related changes in the urinary compositions of male Sprague Dawley rats and effects of data normalization methods on statistical and quantitative analysis.
#@Laura K. Schnackenberg,Jinchun Sun,Parvaneh Espandiari,Ricky D. Holland,Joseph Hanig,Richard D. Beger
#t2007
#cBMC Bioinformatics
#index1221186
#% 
#!
  
#*Structure and function predictions of the Msa protein in .
#@Vijayaraj Nagarajan,Mohamed O. Elasri
#t2007
#cBMC Bioinformatics
#index1221187
#% 
#!
  
#*SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics - exploring current scientific literature for emerging topics.
#@Dietrich Rebholz-Schuhmann,Graham Cameron,Dominic Clark,Erik M. van Mulligen,Jean-Louis Coatrieux,Eva del Hoyo-Barbolla,Fernando Martín-Sánchez,Luciano Milanesi,Ivan Porro,Francesco Beltrame,Ioannis G. Tollis,Johan van der Lei
#t2007
#cBMC Bioinformatics
#index1221188
#% 
#!
  
#*Robust clustering in high dimensional data using statistical depths.
#@Yuanyuan Ding,Xin Dang,Hanxiang Peng,Dawn Wilkins
#t2007
#cBMC Bioinformatics
#index1221189
#% 
#!
  
#*Variation of geometrical and physicochemical properties in protein binding pockets and their ligands.
#@Abdullah Kahraman,Richard J. Morris,Roman A. Laskowski,Janet M. Thornton
#t2007
#cBMC Bioinformatics
#index1221190
#% 
#!
  
#*Comparison of gene expression profiles altered by comfrey and riddelliine in rat liver.
#@Lei Guo,Nan Mei,Stacey L. Dial,James C. Fuscoe,Tao Chen
#t2007
#cBMC Bioinformatics
#index1221191
#% 
#!
  
#*A Grid-based solution for management and analysis of microarrays in distributed experiments.
#@Ivan Porro,Livia Torterolo,Luca Corradi,Marco Fato,Adam Papadimitropoulos,Silvia Scaglione,Andrea Schenone,Federica Viti
#t2007
#cBMC Bioinformatics
#index1221192
#% 
#!
  
#*Biowep: a workflow enactment portal for bioinformatics applications.
#@Paolo Romano,Ezio Bartocci,Guglielmo Bertolini,Flavio De Paoli,Domenico Marra,Giancarlo Mauri,Emanuela Merelli,Luciano Milanesi
#t2007
#cBMC Bioinformatics
#index1221193
#% 
#!
  
#*Constrained hidden Markov models for population-based haplotyping.
#@Niels Landwehr,Taneli Mielikäinen,Lauri Eronen,Hannu Toivonen,Heikki Mannila
#t2007
#cBMC Bioinformatics
#index1221194
#% 
#!
  
#*Computational analysis of biological functions and pathways collectively targeted by co-expressed microRNAs in cancer.
#@Yuriy Gusev,Thomas D. Schmittgen,Megan Lerner,Russell Postier,Daniel Brackett
#t2007
#cBMC Bioinformatics
#index1221195
#% 
#!
  
#*Semi-supervised learning for the identification of syn-expressed genes from fused microarray and image data.
#@Ivan G. Costa,Roland Krause,Lennart Opitz,Alexander Schliep
#t2007
#cBMC Bioinformatics
#index1221196
#% 
#!
  
#*CORRIE: enzyme sequence annotation with confidence estimates.
#@Benjamin Audit,Emmanuel D. Levy,Walter R. Gilks,Leon Goldovsky,Christos A. Ouzounis
#t2007
#cBMC Bioinformatics
#index1221197
#% 
#!
  
#*Optimising oligonucleotide array design for ChIP-on-chip.
#@Fiona G. G. Nielsen,Stefan Gräf,Xinmin Zhang,Stefan Kurtz,Sergei Denissov,Roland Green,Ewan Birney,Paul Flicek,Martijn A. Huynen,Henk Stunnenberg
#t2007
#cBMC Bioinformatics
#index1221198
#% 
#!
  
#*A novel, fast, HMM-with-Duration implementation - for application with a new, pattern recognition informed, nanopore detector.
#@Stephen Winters-Hilt,Carl Baribault
#t2007
#cBMC Bioinformatics
#index1221199
#% 
#!
  
#*Bayesian approaches to reverse engineer cellular systems: a simulation study on nonlinear Gaussian networks.
#@Fulvia Ferrazzi,Paola Sebastiani,Marco Ramoni,Riccardo Bellazzi
#t2007
#cBMC Bioinformatics
#index1221200
#% 
#!
  
#*A Method of Gene Expression Data Partitioning for the Construction of Context-Sensitive PBNs.
#@Le Yu,Stephen Marshall
#t2005
#cBMC Bioinformatics
#index1221201
#% 
#!
  
#*The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.
#@Marc A. Martí-Renom,Andrea Rossi,Fátima Al-Shahrour,Fred P. Davis,Ursula Pieper,Joaquín Dopazo,Andrej Sali
#t2007
#cBMC Bioinformatics
#index1221202
#% 
#!
  
#*Inferring cellular networks - a review.
#@Florian Markowetz,Rainer Spang
#t2007
#cBMC Bioinformatics
#index1221203
#% 
#!
  
#*Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation.
#@Nicola Neretti,Daniel Remondini,Marc Tatar,John M. Sedivy,Michela Pierini,Dawn Mazzatti,Jonathan Powell,Claudio Franceschi,Gastone C. Castellani
#t2007
#cBMC Bioinformatics
#index1221204
#% 
#!
  
#*Robust imputation method for missing values in microarray data.
#@Dankyu Yoon,Eun-Kyung Lee,Taesung Park
#t2007
#cBMC Bioinformatics
#index1221205
#% 
#!
  
#*Refining intra-protein contact prediction by graph analysis.
#@Milana Frenkel-Morgenstern,Rachel Magid,Eran Eyal,Shmuel Pietrokovski
#t2007
#cBMC Bioinformatics
#index1221206
#% 
#!
  
#*Preliminary nanopore cheminformatics analysis of aptamer-target binding strength.
#@Karen Thomson,Iftekhar Amin,Eric Morales,Stephen Winters-Hilt
#t2007
#cBMC Bioinformatics
#index1221207
#% 
#!
  
#*Articles selected from posters presented at the Tenth Annual International Conference on Research in Computational Biology - Preface.
#@Alberto Apostolico,Raffaele Giancarlo,Concettina Guerra,Giuseppe Lancia
#t2007
#cBMC Bioinformatics
#index1221208
#% 
#!
  
#*BioWMS: a web-based Workflow Management System for bioinformatics.
#@Ezio Bartocci,Flavio Corradini,Emanuela Merelli,Lorenzo Scortichini
#t2007
#cBMC Bioinformatics
#index1221209
#% 
#!
  
#*Automatic extraction of reliable regions from multiple sequence alignments.
#@Timo Lassmann,Erik L. L. Sonnhammer
#t2007
#cBMC Bioinformatics
#index1221210
#% 
#!
  
#*Computational analyses of eukaryotic promoters.
#@Michael Q. Zhang
#t2007
#cBMC Bioinformatics
#index1221211
#% 
#!
  
#*Analysis of nanopore detector measurements using Machine-Learning methods, with application to single-molecule kinetic analysis.
#@Matthew Landry,Stephen Winters-Hilt
#t2007
#cBMC Bioinformatics
#index1221212
#% 
#!
  
#*Gene models from ESTs (GeneModelEST): an application on the genome.
#@Nunzio D'Agostino,Alessandra Traini,Luigi Frusciante,Maria Luisa Chiusano
#t2007
#cBMC Bioinformatics
#index1221213
#% 
#!
  
#*Genomic scale analysis of lateral gene transfer in Apicomplexan parasites: insights into early eukaryotic evolution, host-pathogen interaction and drug target development.
#@Lucia Peixoto,David S. Roos
#t2007
#cBMC Bioinformatics
#index1221214
#% 
#!
  
#*Finding regulatory elements and regulatory motifs: a general probabilistic framework.
#@Erik van Nimwegen
#t2007
#cBMC Bioinformatics
#index1221215
#% 
#!
  
#*On consensus biomarker selection.
#@Janusz Dutkowski,Anna Gambin
#t2007
#cBMC Bioinformatics
#index1221216
#% 
#!
  
#*Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations.
#@Hyunsoo Kim,Haesun Park,Barry L. Drake
#t2007
#cBMC Bioinformatics
#index1221217
#% 
#!
  
#*Comparative analysis of long DNA sequences by per element information content using different contexts.
#@Trevor I. Dix,David R. Powell,Lloyd Allison,Julie Bernal,Samira Jaeger,Linda Stern
#t2007
#cBMC Bioinformatics
#index1221218
#% 
#!
  
#*Prediction of peptides observable by mass spectrometry applied at the experimental set level.
#@William S. Sanders,Susan M. Bridges,Fiona M. McCarthy,Bindu Nanduri,Shane C. Burgess
#t2007
#cBMC Bioinformatics
#index1221219
#% 
#!
  
#*Towards Semantic e-Science for Traditional Chinese Medicine.
#@Huajun Chen,Yuxin Mao,Xiaoqing Zheng,Meng Cui,Yi Feng,ShuiGuang Deng,Aining Yin,Chunying Zhou,Jingming Tang,Xiaohong Jiang,Zhaohui Wu
#t2007
#cBMC Bioinformatics
#index1221220
#% 
#!
  
#*Analyzing gene expression in the mouse brain with image registration, feature extraction and block clustering.
#@Manjunatha Jagalur,Chris Pal,Erik G. Learned-Miller,R. Thomas Zoeller,David Kulp
#t2007
#cBMC Bioinformatics
#index1221221
#% 
#!
  
#*Identification of hot regions in protein-protein interactions by sequential pattern mining.
#@Chen-Ming Hsu,Chien-Yu Chen,Baw-Jhiune Liu,Chih-Chang Huang,Min-Hung Laio,Chien-Chieh Lin,Tzung-Lin Wu
#t2007
#cBMC Bioinformatics
#index1221222
#% 
#!
  
#*Transcriptional regulation at a glance.
#@Silke Sperling
#t2007
#cBMC Bioinformatics
#index1221223
#% 
#!
  
#*LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.
#@Andrew K. Smith,Kei-Hoi Cheung,Kevin Y. Yip,Martin H. Schultz,Mark Gerstein
#t2007
#cBMC Bioinformatics
#index1221224
#% 
#!
  
#*A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites.
#@Lei Xie,Philip E. Bourne
#t2007
#cBMC Bioinformatics
#index1221225
#% 
#!
  
#*Duration learning for analysis of nanopore ionic current blockades.
#@Alexander G. Churbanov,Carl Baribault,Stephen Winters-Hilt
#t2007
#cBMC Bioinformatics
#index1221226
#% 
#!
  
#*An improved method for identifying functionally linked proteins using phylogenetic profiles.
#@Shawn Cokus,Sayaka Mizutani,Matteo Pellegrini
#t2007
#cBMC Bioinformatics
#index1221227
#% 
#!
  
#*Semi-supervised class discovery using quantitative phenotypes - CVD as a case study.
#@Israel Steinfeld,Roy Navon,Diego Ardigò,Ivana Zavaroni,Zohar Yakhini
#t2007
#cBMC Bioinformatics
#index1221228
#% 
#!
  
#*Methods for estimating human endogenous retrovirus activities from EST databases.
#@Merja Oja,Jaakko Peltonen,Jonas Blomberg,Samuel Kaski
#t2007
#cBMC Bioinformatics
#index1221229
#% 
#!
  
#*Introduction to semantic e-Science in biomedicine.
#@Huajun Chen,Yimin Wang,Zhaohui Wu
#t2007
#cBMC Bioinformatics
#index1221230
#% 
#!
  
#*A systematic strategy for the discovery of candidate genes responsible for phenotypic variation.
#@Paul Fisher,Cornelia Hedeler,Katherine Wolstencroft,Helen Hulme,Harry Noyes,Stephen Kemp,Robert D. Stevens,Andy Brass
#t2007
#cBMC Bioinformatics
#index1221231
#% 
#!
  
#*Validation of an NSP-based (negative selection pattern) gene family identification strategy.
#@Ronald L. Frank,Cyriac Kandoth,Fikret Erçal
#t2008
#cBMC Bioinformatics
#index1221232
#% 
#!
  
#*SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.
#@Iain Melvin,Eugene Ie,Rui Kuang,Jason Weston,William Stafford Noble,Christina S. Leslie
#t2007
#cBMC Bioinformatics
#index1221233
#% 
#!
  
#*Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists.
#@Marco Masseroli,Elisa Bellistri,Andrea Franceschini,Francesco Pinciroli
#t2007
#cBMC Bioinformatics
#index1221234
#% 
#!
  
#*Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites.
#@Gabriele Ausiello,Daniele Peluso,Allegra Via,Manuela Helmer-Citterich
#t2007
#cBMC Bioinformatics
#index1221235
#% 
#!
  
#*A coherent graph-based semantic clustering and summarization approach for biomedical literature and a new summarization evaluation method.
#@Illhoi Yoo,Xiaohua Hu,Il-Yeol Song
#t2007
#cBMC Bioinformatics
#index1221236
#% 
#!
  
#*ProCMD: a database and 3D web resource for protein C mutants.
#@Pasqualina D'Ursi,Francesca Marino,Andrea Caprera,Luciano Milanesi,Elena M. Faioni,Ermanna Rovida
#t2007
#cBMC Bioinformatics
#index1221237
#% 
#!
  
#*Validating module network learning algorithms using simulated data.
#@Tom Michoel,Steven Maere,Eric Bonnet,Anagha Joshi,Yvan Saeys,Tim Van den Bulcke,Koenraad Van Leemput,Piet van Remortel,Martin Kuiper,Kathleen Marchal,Yves Van de Peer
#t2007
#cBMC Bioinformatics
#index1221238
#% 
#!
  
#*A global gene evolution analysis on family using phylogenetic profile.
#@Nicola Vitulo,Alessandro Vezzi,Chiara Romualdi,Stefano Campanaro,Giorgio Valle
#t2007
#cBMC Bioinformatics
#index1221239
#% 
#!
  
#*Analysis of circadian pattern reveals tissue-specific alternative transcription in leptin signaling pathway.
#@Andrey A. Ptitsyn,Jeffrey M. Gimble
#t2007
#cBMC Bioinformatics
#index1221240
#% 
#!
  
#*Nanopore current transduction analysis of protein binding to non-terminal and terminal DNA regions: analysis of transcription factor binding, retroviral DNA terminus dynamics, and retroviral integrase-DNA binding.
#@Stephen Winters-Hilt,Amanda Davis,Iftekhar Amin,Eric Morales
#t2007
#cBMC Bioinformatics
#index1221241
#% 
#!
  
#*Combining comparative genomics with motif discovery to identify human transcription factor DNA-binding motifs.
#@Linyong Mao,W. Jim Zheng
#t2006
#cBMC Bioinformatics
#index1221242
#% 
#!
  
#*Clustering of gene expression data: performance and similarity analysis.
#@Longde Yin,Chun-Hsi Huang,Jun Ni
#t2006
#cBMC Bioinformatics
#index1221243
#% 
#!
  
#*Evaluation of clustering algorithms for gene expression data.
#@Susmita Datta,Somnath Datta
#t2006
#cBMC Bioinformatics
#index1221244
#% 
#!
  
#*Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts.
#@Hong-Woo Chun,Yoshimasa Tsuruoka,Jin-Dong Kim,Rie Shiba,Naoki Nagata,Teruyoshi Hishiki,Jun-ichi Tsujii
#t2006
#cBMC Bioinformatics
#index1221245
#% 
#!
  
#*Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6- associated Pemphigus vulgaris.
#@Joo Chuan Tong,Tin Wee Tan,Animesh A. Sinha,Shoba Ranganathan
#t2006
#cBMC Bioinformatics
#index1221246
#% 
#!
  
#*GOFFA: Gene Ontology For Functional Analysis - A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data.
#@Hongmei Sun,Hong Fang,Tao Chen,Roger Perkins,Weida Tong
#t2006
#cBMC Bioinformatics
#index1221247
#% 
#!
  
#*Comparison of transcriptional responses in liver tissue and primary hepatocyte cell cultures after exposure to hexahydro-1, 3, 5-trinitro-1, 3, 5-triazine.
#@Edward J. Perkins,Wenjun Bao,Xin Guan,Choo-Yaw Ang,Russell D. Wolfinger,Tzu-Ming Chu,Sharon A. Meyer,Laura S. Inouye
#t2006
#cBMC Bioinformatics
#index1221248
#% 
#!
  
#*Identification of new members of hydrophobin family using primary structure analysis.
#@Kuan Yang,Youping Deng,Chaoyang Zhang,Mohamed O. Elasri
#t2006
#cBMC Bioinformatics
#index1221249
#% 
#!
  
#*GenomeBlast: a web tool for small genome comparison.
#@Guoqing Lu,Liying Jiang,Resa M. K. Helikar,Thaine W. Rowley,Luwen Zhang,Xianfeng Chen,Etsuko N. Moriyama
#t2006
#cBMC Bioinformatics
#index1221250
#% 
#!
  
#*The impact of sample imbalance on identifying differentially expressed genes.
#@Kun Yang,Jianzhong Li,Hong Gao
#t2006
#cBMC Bioinformatics
#index1221251
#% 
#!
  
#*DNA Molecule Classification Using Feature Primitives.
#@Raja Tanveer Iqbal,Matthew Landry,Stephen Winters-Hilt
#t2006
#cBMC Bioinformatics
#index1221252
#% 
#!
  
#*Splice site identification using probabilistic parameters and SVM classification.
#@A. K. M. A. Baten,Bill C. H. Chang,Saman K. Halgamuge,Jason Li
#t2006
#cBMC Bioinformatics
#index1221253
#% 
#!
  
#*Particle simulation approach for subcellular dynamics and interactions of biological molecules.
#@Ryuzo Azuma,Tetsuji Kitagawa,Hiroshi Kobayashi,Akihiko Konagaya
#t2006
#cBMC Bioinformatics
#index1221254
#% 
#!
  
#*MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria.
#@Sarita Ranjan,Ranjit Kumar Gundu,Akash Ranjan
#t2006
#cBMC Bioinformatics
#index1221255
#% 
#!
  
#*SVM Classifier - a comprehensive java interface for support vector machine classification of microarray data.
#@Mehdi Pirooznia,Youping Deng
#t2006
#cBMC Bioinformatics
#index1221256
#% 
#!
  
#*Maximum common subgraph: some upper bound and lower bound results.
#@Xiuzhen Huang,Jing Lai,Steven F. Jennings
#t2006
#cBMC Bioinformatics
#index1221257
#% 
#!
  
#*PepDist: A New Framework for Protein-Peptide Binding Prediction based on Learning Peptide Distance Functions.
#@Tomer Hertz,Chen Yanover
#t2006
#cBMC Bioinformatics
#index1221258
#% 
#!
  
#*An Automated Method for Rapid Identification of Putative Gene Family Members in Plants.
#@Ronald L. Frank,Ajay Mane,Fikret Erçal
#t2006
#cBMC Bioinformatics
#index1221259
#% 
#!
  
#*Curation of viral genomes: challenges, applications and the way forward.
#@Urmila Kulkarni-Kale,Shriram Bhosle,G. Sunitha Manjari,Manali Joshi,Sandeep Bansode,Ashok S. Kolaskar
#t2006
#cBMC Bioinformatics
#index1221260
#% 
#!
  
#*Metric for Measuring the Effectiveness of Clustering of DNA Microarray Expression.
#@Raja Loganantharaj,Satish Cheepala,John Clifford
#t2006
#cBMC Bioinformatics
#index1221261
#% 
#!
  
#*A method for computing the overall statistical significance of a treatment effect among a group of genes.
#@Robert R. Delongchamp,Taewon Lee,Cruz Velasco
#t2006
#cBMC Bioinformatics
#index1221262
#% 
#!
  
#*Support Vector Machine Implementations for Classification & Clustering.
#@Stephen Winters-Hilt,Anil Yelundur,Charlie McChesney,Matthew Landry
#t2006
#cBMC Bioinformatics
#index1221263
#% 
#!
  
#*Gene Expression Profiles Distinguish the Carcinogenic Effects of Aristolochic Acid in Target (Kidney) and Non-target (Liver) Tissues in Rats.
#@Tao Chen,Lei Guo,Lu Zhang,Leming M. Shi,Hong Fang,Yongming Sun,James C. Fuscoe,Nan Mei
#t2006
#cBMC Bioinformatics
#index1221264
#% 
#!
  
#*A fast parallel algorithm for finding the longest common sequence of multiple biosequences.
#@Yixin Chen,Andrew Wan,Wei Liu
#t2006
#cBMC Bioinformatics
#index1221265
#% 
#!
  
#*Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions.
#@Tao Han,Cathy D. Melvin,Leming M. Shi,William S. Branham,Carrie L. Moland,P. Scott Pine,Karol L. Thompson,James C. Fuscoe
#t2006
#cBMC Bioinformatics
#index1221266
#% 
#!
  
#*Choosing negative examples for the prediction of protein-protein interactions.
#@Asa Ben-Hur,William Stafford Noble
#t2006
#cBMC Bioinformatics
#index1221267
#% 
#!
  
#*ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context.
#@Adam A. Margolin,Ilya Nemenman,Katia Basso,Chris Wiggins,Gustavo Stolovitzky,Riccardo Dalla Favera,Andrea Califano
#t2006
#cBMC Bioinformatics
#index1221268
#% 
#!
  
#*An improved ant colony algorithm with diversified solutions based on the immune strategy.
#@Ling Qin,Yi Pan,Ling Chen,Yixin Chen
#t2006
#cBMC Bioinformatics
#index1221269
#% 
#!
  
#*Selecting effective siRNA sequences by using radial basis function network and decision tree learning.
#@Shigeru Takasaki,Yoshihiro Kawamura,Akihiko Konagaya
#t2006
#cBMC Bioinformatics
#index1221270
#% 
#!
  
#*Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm.
#@Kang Ning,Hon Wai Leong
#t2006
#cBMC Bioinformatics
#index1221271
#% 
#!
  
#*The Secrets of a Functional Synapse - From a Computational and Experimental Viewpoint.
#@Michal Linial
#t2006
#cBMC Bioinformatics
#index1221272
#% 
#!
  
#*Frequency distribution of TATA Box and extension sequences on human promoters.
#@Wei Shi,Wanlei Zhou
#t2006
#cBMC Bioinformatics
#index1221273
#% 
#!
  
#*An evaluation of human protein-protein interaction data in the public domain.
#@Suresh Mathivanan,Balamurugan Periaswamy,T. K. B. Gandhi,Kumaran Kandasamy,Shubha Suresh,Riaz Mohmood,Y. L. Ramachandra,Akhilesh Pandey
#t2006
#cBMC Bioinformatics
#index1221274
#% 
#!
  
#*Hidden Markov Model Variants and their Application.
#@Stephen Winters-Hilt
#t2006
#cBMC Bioinformatics
#index1221275
#% 
#!
  
#*FM-test: a fuzzy-set-theory-based approach to differential gene expression data analysis.
#@Lily R. Liang,Shiyong Lu,Xuena Wang,Yi Lu,Vinay Mandal,Dorrelyn Patacsil,Deepak Kumar
#t2006
#cBMC Bioinformatics
#index1221276
#% 
#!
  
#*Analysis of gene expression changes in relation to toxicity and tumorigenesis in the livers of Big Blue transgenic rats fed comfrey ().
#@Nan Mei,Lei Guo,Lu Zhang,Leming M. Shi,Yongming Andrew Sun,Chris Fung,Carrie L. Moland,Stacey L. Dial,James C. Fuscoe,Tao Chen
#t2006
#cBMC Bioinformatics
#index1221277
#% 
#!
  
#*Systematic gene function prediction from gene expression data by using a fuzzy nearest-cluster method.
#@Xiaoli Li,Yin-Chet Tan,See-Kiong Ng
#t2006
#cBMC Bioinformatics
#index1221278
#% 
#!
  
#*Terminologies for text-mining; an experiment in the lipoprotein metabolism domain.
#@Dimitra Alexopoulou,Thomas Wächter,Laura Pickersgill,Cecilia Eyre,Michael Schroeder
#t2008
#cBMC Bioinformatics
#index1221279
#% 
#!
  
#*A novel approach to phylogenetic tree construction using stochastic optimization and clustering.
#@Ling Qin,Yixin Chen,Yi Pan,Ling Chen
#t2006
#cBMC Bioinformatics
#index1221280
#% 
#!
  
#*The relationship between protein sequences and their gene ontology functions.
#@Zhong-Hui Duan,Brent Hughes,Lothar Reichel,Dianne Perez,Ting Shi
#t2006
#cBMC Bioinformatics
#index1221281
#% 
#!
  
#*Permutation test for periodicity in short time series data.
#@Andrey A. Ptitsyn,Sanjin Zvonic,Jeffrey M. Gimble
#t2006
#cBMC Bioinformatics
#index1221282
#% 
#!
  
#*Application of the Linux cluster for exhaustive window haplotype analysis using the FBAT and Unphased programs.
#@Hiroyuki Mishima,Andrew C. Lidral,Jun Ni
#t2008
#cBMC Bioinformatics
#index1221283
#% 
#!
  
#*A Fourier Transformation based Method to Mine Peptide Space for Antimicrobial Activity.
#@Vijayaraj Nagarajan,Navodit Kaushik,Beddhu Murali,Chaoyang Zhang,Sanyogita Lakhera,Mohamed O. Elasri,Youping Deng
#t2006
#cBMC Bioinformatics
#index1221284
#% 
#!
  
#*Microarray analysis distinguishes differential gene expression patterns from large and small colony mutants of L5178Y mouse lymphoma cells.
#@Tao Han,Jianyong Wang,Weida Tong,Martha M. Moore,James C. Fuscoe,Tao Chen
#t2006
#cBMC Bioinformatics
#index1221285
#% 
#!
  
#*Learning Interpretable SVMs for Biological Sequence Classification.
#@Gunnar Rätsch,Sören Sonnenburg,Christin Schäfer
#t2006
#cBMC Bioinformatics
#index1221286
#% 
#!
  
#*Degenerated primer design to amplify the heavy chain variable region from immunoglobulin cDNA.
#@Ying Wang,Wei Chen,Xu Li,Bing Cheng
#t2006
#cBMC Bioinformatics
#index1221287
#% 
#!
  
#*Development of computations in bioscience and bioinformatics and its application: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB06).
#@Youping Deng,Jun Ni,Chaoyang Zhang
#t2006
#cBMC Bioinformatics
#index1221288
#% 
#!
  
#*Cheminformatics methods for novel nanopore analysis of HIV DNA termini.
#@Stephen Winters-Hilt,Matthew Landry,Mark Akeson,Maria Tanase,Iftekhar Amin,Amy Coombs,Eric Morales,John Millet,Carl Baribault,Srikanth Sendamangalam
#t2006
#cBMC Bioinformatics
#index1221289
#% 
#!
  
#*An environment for relation mining over richly annotated corpora: the case of GENIA.
#@Fabio Rinaldi,Gerold Schneider,Kaarel Kaljurand,Michael Hess,Martin Romacker
#t2006
#cBMC Bioinformatics
#index1221290
#% 
#!
  
#*A classification-based framework for predicting and analyzing gene regulatory response.
#@Anshul Kundaje,Manuel Middendorf,Mihir Shah,Chris Wiggins,Yoav Freund,Christina S. Leslie
#t2006
#cBMC Bioinformatics
#index1221291
#% 
#!
  
#*Differential gene expression in mouse primary hepatocytes exposed to the peroxisome proliferator-activated receptor alpha agonists.
#@Lei Guo,Hong Fang,Jim Collins,Xiao-hui Fan,Stacey L. Dial,Alex Wong,Kshama Mehta,Ernice Blann,Leming M. Shi,Weida Tong,Yvonne P. Dragan
#t2006
#cBMC Bioinformatics
#index1221292
#% 
#!
  
#*Proceedings of the Second International Symposium for Semantic Mining in Biomedicine.
#@Sophia Ananiadou,Juliane Fluck
#t2006
#cBMC Bioinformatics
#index1221293
#% 
#!
  
#*RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers.
#@Venkata Thodima,Mehdi Pirooznia,Youping Deng
#t2006
#cBMC Bioinformatics
#index1221294
#% 
#!
  
#*A scalable machine-learning approach to recognize chemical names within large text databases.
#@Jonathan D. Wren
#t2006
#cBMC Bioinformatics
#index1221295
#% 
#!
  
#*Protein Ranking by Semi-Supervised Network Propagation.
#@Jason Weston,Rui Kuang,Christina S. Leslie,William Stafford Noble
#t2006
#cBMC Bioinformatics
#index1221296
#% 
#!
  
#*A critical review of PASBio's argument structures for biomedical verbs.
#@K. Bretonnel Cohen,Lawrence Hunter
#t2006
#cBMC Bioinformatics
#index1221297
#% 
#!
  
#*Parallelization of multicategory support vector machines (PMC-SVM) for classifying microarray data.
#@Chaoyang Zhang,Peng Li,Arun Rajendran,Youping Deng,Dequan Chen
#t2006
#cBMC Bioinformatics
#index1221298
#% 
#!
  
#*A Regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data.
#@Zizhen Yao,Walter L. Ruzzo
#t2006
#cBMC Bioinformatics
#index1221299
#% 
#!
  
#*Determination of the minimum number of microarray experiments for discovery of gene expression patterns.
#@Fang-Xiang Wu,W. J. Zhang,Anthony J. Kusalik
#t2006
#cBMC Bioinformatics
#index1221300
#% 
#!
  
#*Estimate haplotype frequencies in pedigrees.
#@Qiangfeng Zhang,YuZhong Zhao,Guoliang Chen,Yun Xu
#t2006
#cBMC Bioinformatics
#index1221301
#% 
#!
  
#*Improved Chou-Fasman method for protein secondary structure prediction.
#@Hang Chen,Fei Gu,Zhengge Huang
#t2006
#cBMC Bioinformatics
#index1221302
#% 
#!
  
#*Evaluation and comparison of mammalian subcellular localization prediction methods.
#@Josefine Sprenger,J. Lynn Fink,Rohan D. Teasdale
#t2006
#cBMC Bioinformatics
#index1221303
#% 
#!
  
#*AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data.
#@Guoqing Lu,The V. Nguyen,Yuannan Xia,Michael Fromm
#t2006
#cBMC Bioinformatics
#index1221304
#% 
#!
  
#*Mapping data elements to terminological resources for integrating biomedical data sources.
#@Fleur Mougin,Anita Burgun,Olivier Bodenreider
#t2006
#cBMC Bioinformatics
#index1221305
#% 
#!
  
#*Independent Component Analysis-motivated Approach to Classificatory Decomposition of Cortical Evoked Potentials.
#@Tomasz G. Smolinski,Roger Buchanan,Grzegorz M. Boratyn,Mariofanna G. Milanova,Astrid A. Prinz
#t2006
#cBMC Bioinformatics
#index1221306
#% 
#!
  
#*Improving the Performance of SVM-RFE to Select Genes in Microarray Data.
#@Yuanyuan Ding,Dawn Wilkins
#t2006
#cBMC Bioinformatics
#index1221307
#% 
#!
  
#*Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach.
#@H. H. Lin,L. Y. Han,H. L. Zhang,C. J. Zheng,B. Xie,Zhi Wei Cao,Yu Zong Chen
#t2006
#cBMC Bioinformatics
#index1221308
#% 
#!
  
#*Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome.
#@Alan Christoffels,Richard Bartfai,Hamsa Srinivasan,Hans Komen,Laszlo Orban
#t2006
#cBMC Bioinformatics
#index1221309
#% 
#!
  
#*NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition.
#@Richard Tzong-Han Tsai,Cheng-Lung Sung,Hong-Jie Dai,Hsieh-Chuan Hung,Ting-Yi Sung,Wen-Lian Hsu
#t2006
#cBMC Bioinformatics
#index1221310
#% 
#!
  
#*Asymptotic behaviour and optimal word size for exact and approximate word matches between random sequences.
#@Sylvain Forêt,Miriam R. Kantorovitz,Conrad J. Burden
#t2006
#cBMC Bioinformatics
#index1221311
#% 
#!
  
#*MicroTar: predicting microRNA targets from RNA duplexes.
#@Rahul Thadani,Martti T. Tammi
#t2006
#cBMC Bioinformatics
#index1221312
#% 
#!
  
#*SPIDer: protein-protein interaction database.
#@Xiaomei Wu,Lei Zhu,Jie Guo,Cong Fu,Hongjun Zhou,Dong Dong,Zhenbo Li,Da-Yong Zhang,Kui Lin
#t2006
#cBMC Bioinformatics
#index1221313
#% 
#!
  
#*Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus.
#@Asif M. Khan,A. T. Heiny,Kenneth X. Lee,Kellathur N. Srinivasan,Tin Wee Tan,J. Thomas August,Vladimir Brusic
#t2006
#cBMC Bioinformatics
#index1221314
#% 
#!
  
#*: A Data Management System for Evolutionary Genomics and Biodiversity.
#@Laila A. Nahum,Matthew T. Reynolds,Zhengyuan O. Wang,Jeremiah J. Faith,Rahul Jonna,Zhi J. Jiang,Thomas J. Meyer,David D. Pollock
#t2006
#cBMC Bioinformatics
#index1221315
#% 
#!
  
#*SEQOPTICS: a protein sequence clustering system.
#@Yonghui Chen,Kevin D. Reilly,Alan P. Sprague,Zhijie Guan
#t2006
#cBMC Bioinformatics
#index1221316
#% 
#!
  
#*SVM-based prediction of caspase substrate cleavage sites.
#@Lawrence J. K. Wee,Tin Wee Tan,Shoba Ranganathan
#t2006
#cBMC Bioinformatics
#index1221317
#% 
#!
  
#*Nanopore Detector based analysis of single-molecule conformational kinetics and binding interactions.
#@Stephen Winters-Hilt
#t2006
#cBMC Bioinformatics
#index1221318
#% 
#!
  
#*Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches.
#@Sampo Pyysalo,Tapio Salakoski,Sophie Aubin,Adeline Nazarenko
#t2006
#cBMC Bioinformatics
#index1221319
#% 
#!
  
#*Projections for fast protein structure retrieval.
#@Sourangshu Bhattacharya,Chiranjib Bhattacharyya,Nagasuma Chandra
#t2006
#cBMC Bioinformatics
#index1221320
#% 
#!
  
#*Network-based de-noising improves prediction from microarray data.
#@Tsuyoshi Kato,Yukio Murata,Koh Miura,Kiyoshi Asai,Paul Horton,Koji Tsuda,Wataru Fujibuchi
#t2006
#cBMC Bioinformatics
#index1221321
#% 
#!
  
#*modelling of hormone response elements.
#@Maria Stepanova,Feng Lin,Valerie C.-L. Lin
#t2006
#cBMC Bioinformatics
#index1221322
#% 
#!
  
#*Fly-DPI: database of protein interactomes for in the approach of systems biology.
#@Chung-Yen Lin,Shu-Hwa Chen,Chi-Shiang Cho,Chia-Ling Chen,Fan-Kai Lin,Chieh Hua Lin,Pao-Yang Chen,Chen-Zen Lo,Chao A. Hsiung
#t2006
#cBMC Bioinformatics
#index1221323
#% 
#!
  
#*Proceedings of the Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society.
#@Jonathan D. Wren,Yuriy Gusev,Andrey A. Ptitsyn,Stephen Winters-Hilt
#t2006
#cBMC Bioinformatics
#index1221324
#% 
#!
  
#*Modelling study of dimerization in mammalian defensins.
#@Anita Suresh,Chandra Verma
#t2006
#cBMC Bioinformatics
#index1221325
#% 
#!
  
#*Improving the performance of DomainDiscovery of protein domain boundary assignment using inter-domain linker index.
#@Abdur R. Sikder,Albert Y. Zomaya
#t2006
#cBMC Bioinformatics
#index1221326
#% 
#!
  
#*Trends in life science grid: from computing grid to knowledge grid.
#@Akihiko Konagaya
#t2006
#cBMC Bioinformatics
#index1221327
#% 
#!
  
#*Discrete profile comparison using information bottleneck.
#@Sean O'Rourke,Gal Chechik,Robin Friedman,Eleazar Eskin
#t2006
#cBMC Bioinformatics
#index1221328
#% 
#!
  
#*Establishing bioinformatics research in the Asia Pacific.
#@Shoba Ranganathan,Martti Tammi,Michael Gribskov,Tin Wee Tan
#t2006
#cBMC Bioinformatics
#index1221329
#% 
#!
  
#*The Cluster Variation Method for Efficient Linkage Analysis on Extended Pedigrees.
#@Cornelis A. Albers,Martijn A. R. Leisink,Hilbert J. Kappen
#t2006
#cBMC Bioinformatics
#index1221330
#% 
#!
  
#*Ontology-based, Tissue MicroArray oriented, image centered tissue bank.
#@Federica Viti,Ivan Merelli,Andrea Caprera,Barbara Lazzari,Alessandra Stella,Luciano Milanesi
#t2008
#cBMC Bioinformatics
#index1221331
#% 
#!
  
#*Exon level integration of proteomics and microarray data.
#@Danny A. Bitton,Michal J. Okoniewski,Yvonne Connolly,Crispin J. Miller
#t2008
#cBMC Bioinformatics
#index1221332
#% 
#!
  
#*A Semantic Web for bioinformatics: goals, tools, systems, applications.
#@Nicola Cannata,Michael Schroeder,Roberto Marangoni,Paolo Romano
#t2008
#cBMC Bioinformatics
#index1221333
#% 
#!
  
#*Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes.
#@Manisha Brahmachary,Christian Schönbach,Liang Yang,Enli Huang,Sin Lam Tan,Rajesh Chowdhary,S. P. T. Krishnan,Chin-Yo Lin,David A. Hume,Chikatoshi Kai,Jun Kawai,Piero Carninci,Yoshihide Hayashizaki,Vladimir B. Bajic
#t2006
#cBMC Bioinformatics
#index1221334
#% 
#!
  
#*Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction.
#@Julien Gobeill,Imad Tbahriti,Frédéric Ehrler,Anaïs Mottaz,Anne-Lise Veuthey,Patrick Ruch
#t2008
#cBMC Bioinformatics
#index1221335
#% 
#!
  
#*Mapping proteins to disease terminologies: from UniProt to MeSH.
#@Anaïs Mottaz,Yum Lina Yip,Patrick Ruch,Anne-Lise Veuthey
#t2008
#cBMC Bioinformatics
#index1221336
#% 
#!
  
#*Beyond microarrays: Finding key transcription factors controlling signal transduction pathways.
#@Alexander E. Kel,Nico Voss,Ruy Jauregui,Olga V. Kel-Margoulis,Edgar Wingender
#t2006
#cBMC Bioinformatics
#index1221337
#% 
#!
  
#*analysis of expressed sequence tags from (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches.
#@Shivashankar H. Nagaraj,Robin B. Gasser,Alasdair J. Nisbet,Shoba Ranganathan
#t2008
#cBMC Bioinformatics
#index1221338
#% 
#!
  
#*BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment.
#@George Chin Jr.,Daniel G. Chavarría-Miranda,Grant C. Nakamura,Heidi J. Sofia
#t2008
#cBMC Bioinformatics
#index1221339
#% 
#!
  
#*Environment specific substitution tables for thermophilic proteins.
#@K. Mizuguchi,M. Sele,Maria Vittoria Cubellis
#t2007
#cBMC Bioinformatics
#index1221340
#% 
#!
  
#*Protein evolution driven by symmetric structural repeats.
#@Anne-Laure Abraham,Joël Pothier,Eduardo P. C. Rocha
#t2008
#cBMC Bioinformatics
#index1221341
#% 
#!
  
#*Exploiting and integrating rich features for biological literature classification.
#@Hongning Wang,Minlie Huang,Shilin Ding,Xiaoyan Zhu
#t2008
#cBMC Bioinformatics
#index1221342
#% 
#!
  
#*Functional site prediction selects correct protein models.
#@Vijayalakshmi Chelliah,William R. Taylor
#t2008
#cBMC Bioinformatics
#index1221343
#% 
#!
  
#*An Integrated Korean Biodiversity and Genetic Information Retrieval System.
#@Jeongheui Lim,Jong Bhak,Hee-Mock Oh,Chang-Bae Kim,Yong-Ha Park,Woon Kee Paek
#t2008
#cBMC Bioinformatics
#index1221344
#% 
#!
  
#*Functional module detection by functional flow pattern mining in protein interaction networks.
#@Young-Rae Cho,Lei Shi,Aidong Zhang
#t2008
#cBMC Bioinformatics
#index1221345
#% 
#!
  
#*ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.
#@Tianxiao Huan,Andrey Y. Sivachenko,Scott H. Harrison,Jake Yue Chen
#t2008
#cBMC Bioinformatics
#index1221346
#% 
#!
  
#*ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses.
#@Todd H. Stokes,J. T. Torrance,Henry Li,May D. Wang
#t2008
#cBMC Bioinformatics
#index1221347
#% 
#!
  
#*Transmembrane helix prediction using amino acid property features and latent semantic analysis.
#@Madhavi Ganapathiraju,Narayanas Balakrishnan,Raj Reddy,Judith Klein-Seetharaman
#t2008
#cBMC Bioinformatics
#index1221348
#% 
#!
  
#*Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles.
#@Richard Tzong-Han Tsai,Hsi-Chuan Hung,Hong-Jie Dai,Yi-Wen Lin,Wen-Lian Hsu
#t2008
#cBMC Bioinformatics
#index1221349
#% 
#!
  
#*RDFScape: Semantic Web meets Systems Biology.
#@Andrea Splendiani
#t2008
#cBMC Bioinformatics
#index1221350
#% 
#!
  
#*The MoVIN server for the analysis of protein interaction networks.
#@Paolo Marcatili,Giovanni Bussotti,Anna Tramontano
#t2008
#cBMC Bioinformatics
#index1221351
#% 
#!
  
#*Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research.
#@Hong Huang Lin,Guanglan Zhang,Songsak Tongchusak,Ellis L. Reinherz,Vladimir Brusic
#t2008
#cBMC Bioinformatics
#index1221352
#% 
#!
  
#*Version VI of the ESTree db: an improved tool for peach transcriptome analysis.
#@Barbara Lazzari,Andrea Caprera,Alberto Vecchietti,Ivan Merelli,Francesca Barale,Luciano Milanesi,Alessandra Stella,Carlo Pozzi
#t2008
#cBMC Bioinformatics
#index1221353
#% 
#!
  
#*An iterative block-shifting approach to retention time alignment that preserves the shape and area of gas chromatography-mass spectrometry peaks.
#@Minho Chae,Robert J. Shmookler Reis,John J. Thaden
#t2008
#cBMC Bioinformatics
#index1221354
#% 
#!
  
#*Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies.
#@Xiaojing Wang,Di Wu,SiYuan Zheng,Jing Sun,Lin Tao,Yixue Li,Zhi-Wei Cao
#t2008
#cBMC Bioinformatics
#index1221355
#% 
#!
  
#*CellExcite: an efficient simulation environment for excitable cells.
#@Ezio Bartocci,Flavio Corradini,Emilia Entcheva,Radu Grosu,Scott A. Smolka
#t2008
#cBMC Bioinformatics
#index1221356
#% 
#!
  
#*Modeling mis-folded lysozyme aggregates.
#@Pongsathorn Chotikasemsri,Claire Rinehart
#t2008
#cBMC Bioinformatics
#index1221357
#% 
#!
  
#*A three-state prediction of single point mutations on protein stability changes.
#@Emidio Capriotti,Piero Fariselli,Ivan Rossi,Rita Casadio
#t2008
#cBMC Bioinformatics
#index1221358
#% 
#!
  
#*Time-dependent ARMA modeling of genomic sequences.
#@Jerzy S. Zielinski,Nidhal Bouaynaya,Dan Schonfeld,William O'Neill
#t2008
#cBMC Bioinformatics
#index1221359
#% 
#!
  
#*Evaluation of pooled allelotyping versus individual genotyping for genome-wide association analysis of complex disease.
#@Siddharth Pratap,Scott M. Williams,Shawn E. Levy
#t2008
#cBMC Bioinformatics
#index1221360
#% 
#!
  
#*Comprehensive analysis of circadian periodic pattern in plant transcriptome.
#@Andrey A. Ptitsyn
#t2008
#cBMC Bioinformatics
#index1221361
#% 
#!
  
#*Drug interaction prediction using ontology-driven hypothetical assertion framework for pathway generation followed by numerical simulation.
#@Takeshi Arikuma,Sumi Yoshikawa,Ryuzo Azuma,Kentaro Watanabe,Kazumi Matsumura,Akihiko Konagaya
#t2008
#cBMC Bioinformatics
#index1221362
#% 
#!
  
#*Robust detection method for differential expression studies.
#@Shesh N. Rai,Stanley Pounds
#t2008
#cBMC Bioinformatics
#index1221363
#% 
#!
  
#*Modelling the structures of G protein-coupled receptors aided by three-dimensional validation.
#@Siavoush Dastmalchi,W. Bret Church,Michael B. Morris
#t2008
#cBMC Bioinformatics
#index1221364
#% 
#!
  
#*On deducing causality in metabolic networks.
#@Chiara Bodei,Andrea Bracciali,Davide Chiarugi
#t2008
#cBMC Bioinformatics
#index1221365
#% 
#!
  
#*Ranking single nucleotide polymorphisms by potential deleterious effects.
#@Phil Hyoun Lee,Hagit Shatkay
#t2008
#cBMC Bioinformatics
#index1221366
#% 
#!
  
#*GraphFind: enhancing graph searching by low support data mining techniques.
#@Alfredo Ferro,Rosalba Giugno,Misael Mongiovì,Alfredo Pulvirenti,Dmitry Skripin,Dennis Shasha
#t2008
#cBMC Bioinformatics
#index1221367
#% 
#!
  
#*Integrating protein-protein interactions and text mining for protein function prediction.
#@Samira Jaeger,Sylvain Gaudan,Ulf Leser,Dietrich Rebholz-Schuhmann
#t2008
#cBMC Bioinformatics
#index1221368
#% 
#!
  
#*Metrics for GO based protein semantic similarity: a systematic evaluation.
#@Catia Pesquita,Daniel Faria,Hugo P. Bastos,António E. N. Ferreira,André O. Falcão,Francisco M. Couto
#t2008
#cBMC Bioinformatics
#index1221369
#% 
#!
  
#*Using a kernel density estimation based classifier to predict species-specific microRNA precursors.
#@Darby Tien-Hao Chang,Chih-Ching Wang,Jian-Wei Chen
#t2008
#cBMC Bioinformatics
#index1221370
#% 
#!
  
#*FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures.
#@Gabriele Ausiello,Pier Federico Gherardini,Paolo Marcatili,Anna Tramontano,Allegra Via,Manuela Helmer-Citterich
#t2008
#cBMC Bioinformatics
#index1221371
#% 
#!
  
#*Ontology-guided data preparation for discovering genotype-phenotype relationships.
#@Adrien Coulet,Malika Smaïl-Tabbone,Pascale Benlian,Amedeo Napoli,Marie-Dominique Devignes
#t2008
#cBMC Bioinformatics
#index1221372
#% 
#!
  
#*Normalizing biomedical terms by minimizing ambiguity and variability.
#@Yoshimasa Tsuruoka,John McNaught,Sophia Ananiadou
#t2008
#cBMC Bioinformatics
#index1221373
#% 
#!
  
#*Stability of the core domain of p53: insights from computer simulations.
#@Arumugam Madhumalar,Derek John Smith,Chandra Verma
#t2008
#cBMC Bioinformatics
#index1221374
#% 
#!
  
#*Real value prediction of protein solvent accessibility using enhanced PSSM features.
#@Darby Tien-Hao Chang,Hsuan-Yu Huang,Yu-Tang Syu,Chih-Peng Wu
#t2008
#cBMC Bioinformatics
#index1221375
#% 
#!
  
#*MiRTif: a support vector machine-based microRNA target interaction filter.
#@Yuchen Yang,Yu-Ping Wang,Kuo-Bin Li
#t2008
#cBMC Bioinformatics
#index1221376
#% 
#!
  
#*Optimal spliced alignments of short sequence reads.
#@Fabio De Bona,Stephan Ossowski,Korbinian Schneeberger,Gunnar Rätsch
#t2008
#cBMC Bioinformatics
#index1221377
#% 
#!
  
#*Proceedings of the 2008 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
#@Jonathan D. Wren,Dawn Wilkins,James C. Fuscoe,Susan Bridges,Stephen Winters-Hilt,Yuriy Gusev
#t2008
#cBMC Bioinformatics
#index1221378
#% 
#!
  
#*Analyzing the simplicial decomposition of spatial protein structures.
#@Rafael Ördög,Zoltan Szabadka,Vince Grolmusz
#t2008
#cBMC Bioinformatics
#index1221379
#% 
#!
  
#*Recognizing speculative language in biomedical research articles: a linguistically motivated perspective.
#@Halil Kilicoglu,Sabine Bergler
#t2008
#cBMC Bioinformatics
#index1221380
#%20719
#!
  
#*InteroPORC: an automated tool to predict highly conserved protein interaction networks.
#@Magali Michaut,Samuel Kerrien,Luisa Montecchi-Palazzi,Corinne Cassier-Chauvat,Franck Chauvat,Jean-Christophe Aude,Pierre Legrain,Henning Hermjakob
#t2008
#cBMC Bioinformatics
#index1221381
#% 
#!
  
#*Techniques for the analysis of trichome expressed sequence tags.
#@Joseph Morris,Eric C. Rouchka,David Schultz
#t2008
#cBMC Bioinformatics
#index1221382
#% 
#!
  
#*Clustering ionic flow blockade toggles with a Mixture of HMMs.
#@Alexander G. Churbanov,Stephen Winters-Hilt
#t2008
#cBMC Bioinformatics
#index1221383
#% 
#!
  
#*Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008.
#@Amos Bairoch,Sarah Cohen Boulakia,Christine Froidevaux
#t2008
#cBMC Bioinformatics
#index1221384
#% 
#!
  
#*Discovering relationships among dispersed repeats using spatial association rule mining.
#@Surya Saha,Susan Bridges,Zenaida Magbanua,Daniel G. Peterson
#t2008
#cBMC Bioinformatics
#index1221385
#% 
#!
  
#*An improved string composition method for sequence comparison.
#@Guoqing Lu,Shunpu Zhang,Xiang Fang
#t2008
#cBMC Bioinformatics
#index1221386
#% 
#!
  
#*Predicted mouse peroxisome-targeted proteins and their actual subcellular locations.
#@Yumi Mizuno,Igor Kurochkin,Marlis Herberth,Yasushi Okazaki,Christian Schönbach
#t2008
#cBMC Bioinformatics
#index1221387
#% 
#!
  
#*MTAP: The Motif Tool Assessment Platform.
#@Daniel Quest,Kathryn Dempsey,Mohammad Shafiullah,Dhundy Bastola,Hesham H. Ali
#t2008
#cBMC Bioinformatics
#index1221388
#% 
#!
  
#*Modeling signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage.
#@Khar Heng Choo,Joo Chuan Tong,Shoba Ranganathan
#t2008
#cBMC Bioinformatics
#index1221389
#% 
#!
  
#*SynechoNET: integrated protein-protein interaction database of a model cyanobacterium sp. PCC 6803.
#@Woo-Yeon Kim,Sungsoo Kang,Byoung-Chul Kim,Jeehyun Oh,Seong-Woong Cho,Jong Bhak,Jong-Soon Choi
#t2008
#cBMC Bioinformatics
#index1221390
#% 
#!
  
#*CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment.
#@Svetlin Manavski,Giorgio Valle
#t2008
#cBMC Bioinformatics
#index1221391
#% 
#!
  
#*Gene classification for microarray data with multiple time measurements.
#@Jonathan Quiton,Claire Rinehart,Joseph Chavarria-Smith,Nancy Rice
#t2008
#cBMC Bioinformatics
#index1221392
#% 
#!
  
#*Is plant mitochondrial RNA editing a source of phylogenetic incongruence? An answer from and data sets.
#@Ernesto Picardi,Carla Quagliariello
#t2008
#cBMC Bioinformatics
#index1221393
#% 
#!
  
#*Haplotypes of the imprinted insulin gene are associated with size for gestational age and umbilical cord IGF-II levels.
#@Ronald M. Adkins,Julia Krushkal,Chad Klauser,Everett F. Magann,Grant Somes,John Fain,John Morrison
#t2008
#cBMC Bioinformatics
#index1221394
#% 
#!
  
#*Comparative analyses of bidirectional promoters in vertebrates.
#@Mary Qu Yang,James Taylor,Laura Elnitski
#t2008
#cBMC Bioinformatics
#index1221395
#% 
#!
  
#*Bioinformatics analysis of immune response to group A streptococcal sepsis integrating quantitative trait loci mapping with genome-wide expression studies.
#@Nourtan Abdeltawab,Rita Kansal,Sarah Rowe,Lidia Gardner,Charity Brannen,Mohammed Nooh,Santhosh Mukundan,Hossam Abdelsamed,Ramy Attia,William Taylor,Lu Lu,Robert W. Williams,Malak Kotb
#t2008
#cBMC Bioinformatics
#index1221396
#% 
#!
  
#*Assessment of disease named entity recognition on a corpus of annotated sentences.
#@Antonio Jimeno-Yepes,Ernesto Jiménez-Ruiz,Vivian Lee,Sylvain Gaudan,Rafael Berlanga Llavori,Dietrich Rebholz-Schuhmann
#t2008
#cBMC Bioinformatics
#index1221397
#% 
#!
  
#*Comparative phyloinformatics of virus genes at micro and macro levels in a distributed computing environment.
#@Dadabhai T. Singh,Rahul Trehan,Bertil Schmidt,Timo Bretschneider
#t2008
#cBMC Bioinformatics
#index1221398
#% 
#!
  
#*Monitoring the evolutionary aspect of the Gene Ontology to enhance predictability and usability.
#@Jong C. Park,Tak-eun Kim,Jinah Park
#t2008
#cBMC Bioinformatics
#index1221399
#% 
#!
  
#*Fast splice site detection using information content and feature reduction.
#@A. K. M. A. Baten,Saman K. Halgamuge,Bill C. H. Chang
#t2008
#cBMC Bioinformatics
#index1221400
#% 
#!
  
#*Accelerating the annotation of sparse named entities by dynamic sentence selection.
#@Yoshimasa Tsuruoka,Jun-ichi Tsujii,Sophia Ananiadou
#t2008
#cBMC Bioinformatics
#index1221401
#%20266
#%21280
#%21051
#%335154
#%335836
#%336007
#%815424
#%816983
#%959639
#!
  
#*Evolutionary conservation of DNA-contact residues in DNA-binding domains.
#@Yao-Lin Chang,Huai-Kuang Tsai,Cheng-Yan Kao,Yung-Chiang Chen,Yuh-Jyh Hu,Jinn-Moon Yang
#t2008
#cBMC Bioinformatics
#index1221402
#% 
#!
  
#*Distinguishing the species of biomedical named entities for term identification.
#@Xinglong Wang,Michael Matthews
#t2008
#cBMC Bioinformatics
#index1221403
#% 
#!
  
#*Preferential binding of allosteric modulators to active and inactive conformational states of metabotropic glutamate receptors.
#@Naveena Yanamala,Kalyan C. Tirupula,Judith Klein-Seetharaman
#t2008
#cBMC Bioinformatics
#index1221404
#% 
#!
  
#*Improved general regression network for protein domain boundary prediction.
#@Paul D. Yoo,Abdur R. Sikder,Bing Bing Zhou,Albert Y. Zomaya
#t2008
#cBMC Bioinformatics
#index1221405
#% 
#!
  
#*A topological transformation in evolutionary tree search methods based on maximum likelihood combining p-ECR and neighbor joining.
#@Maozu Guo,Jian-Fu Li,Yang Liu
#t2008
#cBMC Bioinformatics
#index1221406
#% 
#!
  
#*Genomic analysis of gene regulation complexity.
#@Brandon Barker,Jim Lund
#t2008
#cBMC Bioinformatics
#index1221407
#% 
#!
  
#*GeneFisher-P: variations of GeneFisher as processes in Bio-jETI.
#@Anna-Lena Lamprecht,Tiziana Margaria,Bernhard Steffen,Alexander Sczyrba,Sven Hartmeier,Robert Giegerich
#t2008
#cBMC Bioinformatics
#index1221408
#% 
#!
  
#*Mining clinical relationships from patient narratives.
#@Angus Roberts,Robert J. Gaizauskas,Mark Hepple,Yikun Guo
#t2008
#cBMC Bioinformatics
#index1221409
#% 
#!
  
#*Finding microRNA regulatory modules in human genome using rule induction.
#@Dang Hung Tran,Kenji Satou,Tu Bao Ho
#t2008
#cBMC Bioinformatics
#index1221410
#% 
#!
  
#*Cascaded classifiers for confidence-based chemical named entity recognition.
#@Peter Corbett,Ann A. Copestake
#t2008
#cBMC Bioinformatics
#index1221411
#%20776
#%21613
#%335318
#%335154
#!
  
#*Multivariate hierarchical Bayesian model for differential gene expression analysis in microarray experiments.
#@Hongya Zhao,Kwok-Leung Chan,Lee-Ming Cheng,Hong Yan
#t2008
#cBMC Bioinformatics
#index1221412
#% 
#!
  
#*CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge.
#@Jitendra Gaikwad,Varun Khanna,Subramanyam Vemulpad,Joanne Jamie,Jim Kohen,Shoba Ranganathan
#t2008
#cBMC Bioinformatics
#index1221413
#% 
#!
  
#*Systems biology approach to identification of biomarkers for metastatic progression in cancer.
#@Andrey A. Ptitsyn,Michael M. Weil,Douglas H. Thamm
#t2008
#cBMC Bioinformatics
#index1221414
#% 
#!
  
#*AMMO-Prot: amine system project 3D-model finder.
#@Ismael Navas Delgado,Raúl Montañez,Almudena Pino-Ángeles,Aurelio A. Moya-García,José Luis Urdiales,Francisca Sánchez-Jiménez,José Francisco Aldana Montes
#t2008
#cBMC Bioinformatics
#index1221415
#% 
#!
  
#*Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics.
#@Graziano Pesole,Manuela Helmer-Citterich
#t2008
#cBMC Bioinformatics
#index1221416
#% 
#!
  
#*Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data.
#@Arun Rawat,Georg J. Seifert,Youping Deng
#t2008
#cBMC Bioinformatics
#index1221417
#% 
#!
  
#*Exhaustive prediction of disease susceptibility to coding base changes in the human genome.
#@Vinayak Kulkarni,Mounir Errami,Robert Barber,Harold R. Garner
#t2008
#cBMC Bioinformatics
#index1221418
#% 
#!
  
#*Dimension reduction with redundant gene elimination for tumor classification.
#@Xue-Qiang Zeng,Guo-Zheng Li,Jack Y. Yang,Mary Qu Yang,Gengfeng Wu
#t2008
#cBMC Bioinformatics
#index1221419
#% 
#!
  
#*Very Important Pool (VIP) genes - an application for microarray-based molecular signatures.
#@Zhenqiang Su,Huixiao Hong,Hong Fang,Leming M. Shi,Roger Perkins,Weida Tong
#t2008
#cBMC Bioinformatics
#index1221420
#% 
#!
  
#*Time-course analysis of genome-wide gene expression data from hormone-responsive human breast cancer cells.
#@Margherita Mutarelli,Luigi Cicatiello,Lorenzo Ferraro,Olì M. V. Grober,Maria Ravo,Angelo M. Facchiano,Claudia Angelini,Alessandro Weisz
#t2008
#cBMC Bioinformatics
#index1221421
#% 
#!
  
#*Asymmetric bagging and feature selection for activities prediction of drug molecules.
#@Guo-Zheng Li,Hao-Hua Meng,Wen-Cong Lu,Jack Y. Yang,Mary Qu Yang
#t2008
#cBMC Bioinformatics
#index1221422
#% 
#!
  
#*Using a literature-based NMF model for discovering gene functional relationships.
#@Elina Tjioe,Michael W. Berry,Ramin Homayouni,Kevin Heinrich
#t2008
#cBMC Bioinformatics
#index1221423
#% 
#!
  
#*Testing for treatment effects on gene ontology.
#@Taewon Lee,Varsha G. Desai,Cruz Velasco,Robert J. S. Reis,Robert R. Delongchamp
#t2008
#cBMC Bioinformatics
#index1221424
#% 
#!
  
#*TrypanoCyc - a metabolic pathway database for .
#@Bridget Chukualim,Nick Peters,Christiane Hertz-Fowler,Matthew Berriman
#t2008
#cBMC Bioinformatics
#index1221425
#% 
#!
  
#*Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses.
#@Olivo Miotto,Tin Wee Tan,Vladimir Brusic
#t2008
#cBMC Bioinformatics
#index1221426
#% 
#!
  
#*Comparative analysis of non-classically secreted proteins in and symbiotic fungus .
#@Preti Jain,Gopi K. Podila,Maria R. Davis
#t2008
#cBMC Bioinformatics
#index1221427
#% 
#!
  
#*Bio-jETI: a service integration, design, and provisioning platform for orchestrated bioinformatics processes.
#@Tiziana Margaria,Christian Kubczak,Bernhard Steffen
#t2008
#cBMC Bioinformatics
#index1221428
#% 
#!
  
#*Scientific Laboratory Information Management System: Tissue Bank.
#@Chanchai McDonald,Anand Kulkarni,Teeradache Viangteeravat
#t2008
#cBMC Bioinformatics
#index1221429
#% 
#!
  
#*Integrating biological data - the Distributed Annotation System.
#@Andrew M. Jenkinson,Mario Albrecht,Ewan Birney,Hagen Blankenburg,Thomas Down,Robert D. Finn,Henning Hermjakob,Tim J. P. Hubbard,Rafael C. Jimenez,Philip Jones,Andreas Kähäri,Eugene Kulesha,José R. Macías,Gabrielle A. Reeves,Andreas Prlic
#t2008
#cBMC Bioinformatics
#index1221430
#% 
#!
  
#*Large-scale directional relationship extraction and resolution.
#@Cory B. Giles,Jonathan D. Wren
#t2008
#cBMC Bioinformatics
#index1221431
#% 
#!
  
#*Improving the power for detecting overlapping genes from multiple DNA microarray-derived gene lists.
#@Xutao Deng,Jun Xu,Charles Wang
#t2008
#cBMC Bioinformatics
#index1221432
#% 
#!
  
#*Emerging strengths in Asia Pacific bioinformatics.
#@Shoba Ranganathan,Wen-Lian Hsu,Ueng-Cheng Yang,Tin Wee Tan
#t2008
#cBMC Bioinformatics
#index1221433
#% 
#!
  
#*Reconstructing networks of pathways via significance analysis of their intersections.
#@Mirko Francesconi,Daniel Remondini,Nicola Neretti,John M. Sedivy,Leon N. Cooper,Ettore Verondini,Luciano Milanesi,Gastone C. Castellani
#t2008
#cBMC Bioinformatics
#index1221434
#% 
#!
  
#*SNPLims: a data management system for genome wide association studies.
#@Alessandro Orro,Guia Guffanti,Erika Salvi,Fabio Macciardi,Luciano Milanesi
#t2008
#cBMC Bioinformatics
#index1221435
#% 
#!
  
#*MLIP: using multiple processors to compute the posterior probability of linkage.
#@Manika Govil,Alberto Maria Segre,Veronica J. Vieland
#t2008
#cBMC Bioinformatics
#index1221436
#% 
#!
  
#*WSPMaker: a web tool for calculating selection pressure in proteins and domains using window-sliding.
#@Yong Seok Lee,Tae-Hyung Kim,Tae-Wook Kang,Won-Hyong Chung,Gwang-Sik Shin
#t2008
#cBMC Bioinformatics
#index1221437
#% 
#!
  
#*Automatic inference of indexing rules for MEDLINE.
#@Aurélie Névéol,Sonya E. Shooshan,Vincent Claveau
#t2008
#cBMC Bioinformatics
#index1221438
#%744519
#!
  
#*New challenges for text mining: mapping between text and manually curated pathways.
#@Kanae Oda,Jin-Dong Kim,Tomoko Ohta,Daisuke Okanohara,Takuya Matsuzaki,Yuka Tateisi,Jun-ichi Tsujii
#t2008
#cBMC Bioinformatics
#index1221439
#% 
#!
  
#*Quality assessment of peptide tandem mass spectra.
#@Fang-Xiang Wu,Pierre Gagné,Arnaud Droit,Guy G. Poirier
#t2008
#cBMC Bioinformatics
#index1221440
#% 
#!
  
#*MedSurv: a software application for creating, conducting and managing medical surveys and questionnaires.
#@Zachary S. Ware,Lisbeth A. Selby,Jerzy W. Jaromczyk
#t2008
#cBMC Bioinformatics
#index1221441
#% 
#!
  
#*Motif-directed network component analysis for regulatory network inference.
#@Chen Wang,Jianhua Xuan,Li Chen,Po Zhao,Yue Wang,Robert Clarke,Eric P. Hoffman
#t2008
#cBMC Bioinformatics
#index1221442
#% 
#!
  
#*Facilitating the development of controlled vocabularies for metabolomics technologies with text mining.
#@Irena Spasic,Daniel Schober,Susanna-Assunta Sansone,Dietrich Rebholz-Schuhmann,Douglas B. Kell,Norman W. Paton
#t2008
#cBMC Bioinformatics
#index1221443
#% 
#!
  
#*Global profile of genes regulated by securin.
#@Sham S. Kakar,Siva K. Panguluri,Sabine J. Waigel
#t2008
#cBMC Bioinformatics
#index1221444
#% 
#!
  
#*A computational and analysis tool for proteomics research.
#@Xinnan Niu,K. Jill McAfee,Dexter T. Duncan,Michael Assink,Andrew J. Link
#t2008
#cBMC Bioinformatics
#index1221445
#% 
#!
  
#*Functional analysis of novel SNPs and mutations in human and mouse genomes.
#@Chuan-Kun Liu,Yan-Hau Chen,Cheng-Yang Tang,Shu-Chuan Chang,Yi-Jung Lin,Ming-Fang Tsai,Yuan-Tsong Chen,Adam Yao
#t2008
#cBMC Bioinformatics
#index1221446
#% 
#!
  
#*Extracting transcription factor binding sites from unaligned gene sequences with statistical models.
#@Chung-Chin Lu,Wei-Hao Yuan,Te-Ming Chen
#t2008
#cBMC Bioinformatics
#index1221447
#% 
#!
  
#*ISOL@: an Italian SOLAnaceae genomics resource.
#@Maria Luisa Chiusano,Nunzio D'Agostino,Alessandra Traini,Concetta Licciardello,Enrico Raimondo,Mario Aversano,Luigi Frusciante,Luigi Monti
#t2008
#cBMC Bioinformatics
#index1221448
#% 
#!
  
#*Discovering multi-level structures in bio-molecular data through the Bernstein inequality.
#@Alberto Bertoni,Giorgio Valentini
#t2008
#cBMC Bioinformatics
#index1221449
#% 
#!
  
#*A permutation-based method to identify loss-of-heterozygosity using paired genotype microarray data.
#@Stan Pounds,Cheng Cheng,Wenjian Yang,Arzu Onar,Christine Hartford,Susana C. Raimondi,Mary Relling
#t2008
#cBMC Bioinformatics
#index1221450
#% 
#!
  
#*Ortholog-based protein-protein interaction prediction and its application to inter-species interactions.
#@Sheng-An Lee,Chen-hsiung Chan,Chi-Hung Tsai,Jin-Mei Lai,Feng-Sheng Wang,Cheng-Yan Kao,Chi-Ying F. Huang
#t2008
#cBMC Bioinformatics
#index1221451
#% 
#!
  
#*Candidate genes within known QTL of type 1 diabetes from mouse models.
#@Weikuan Gu,Ivan Gerling,Yan Jiao,Peng Gao,Qing Xiong
#t2008
#cBMC Bioinformatics
#index1221452
#% 
#!
  
#*i-SEGOPubmed: a web interface for semantic enabled browsing of PubMed using Gene Ontology.
#@Mohammed Yeasin,Bhanu Vanteru,Jahangheer S. Shaik,Faruk Ahmed
#t2008
#cBMC Bioinformatics
#index1221453
#% 
#!
  
#*Predicting RNA-binding sites of proteins using support vector machines and evolutionary information.
#@Cheng-Wei Cheng,Emily Chia-Yu Su,Jenn-Kang Hwang,Ting-Yi Sung,Wen-Lian Hsu
#t2008
#cBMC Bioinformatics
#index1221454
#% 
#!
  
#*Highlights from the Fourth International Society for Computational Biology Student Council Symposium at the Sixteenth Annual International Conference on Intelligent Systems for Molecular Biology.
#@Lucia Peixoto,Nils Gehlenborg,Sarath Chandra Janga
#t2008
#cBMC Bioinformatics
#index1221455
#% 
#!
  
#*Buffered codons in human transcriptional units.
#@Rami N. Mahdi,Eric C. Rouchka
#t2008
#cBMC Bioinformatics
#index1221456
#% 
#!
  
#*Model of visual attention for video sequences.
#@Mariofanna G. Milanova
#t2008
#cBMC Bioinformatics
#index1221457
#% 
#!
  
#*Molecular docking studies of dithionitrobenzoic acid and its related compounds to protein disulfide isomerase: computational screening of inhibitors to HIV-1 entry.
#@Uthaman Gowthaman,Mannu Jayakanthan,Durai Sundar
#t2008
#cBMC Bioinformatics
#index1221458
#% 
#!
  
#*SNP@Promoter: a database of human SNPs (Single Nucleotide Polymorphisms) within the putative promoter regions.
#@Byoung-Chul Kim,Woo-Yeon Kim,Daeui Park,Won-Hyong Chung,Kwang-sik Shin,Jong Bhak
#t2008
#cBMC Bioinformatics
#index1221459
#% 
#!
  
#*Protein structural class prediction based on an improved statistical strategy.
#@Fei Gu,Hang Chen,Jun Ni
#t2008
#cBMC Bioinformatics
#index1221460
#% 
#!
  
#*Filtering of false positive microRNA candidates by a clustering-based approach.
#@Wing-Sze Leung,Marie C. M. Lin,David Wai-Lok Cheung,Siu-Ming Yiu
#t2008
#cBMC Bioinformatics
#index1221461
#% 
#!
  
#*Wanted: unique names for unique atom positions. PDB-wide analysis of diastereotopic atom names of small molecules containing diphosphate.
#@Christopher A. Bottoms,Dong Xu
#t2008
#cBMC Bioinformatics
#index1221462
#% 
#!
  
#*Analysis of the transcriptome of CD4 T-Lymphocytes from young Non-Obese Diabetic (NOD) mice suggests a key role for cytokines and apoptosis.
#@Dorothy N. Kakoola,Nataliya Lenchik,Anita Curcio-Brint,Ivan Gerling
#t2008
#cBMC Bioinformatics
#index1221463
#% 
#!
  
#*Gene Ontology annotations: what they mean and where they come from.
#@David P. Hill,Barry Smith,Monica S. McAndrews-Hill,Judith A. Blake
#t2008
#cBMC Bioinformatics
#index1221464
#% 
#!
  
#*Towards ontology-driven navigation of the lipid .
#@Christopher J. O. Baker,Kanagasabai Rajaraman,Wee Tiong Ang,Anitha Veeramani,Hong Sang Low,Markus Wenk
#t2008
#cBMC Bioinformatics
#index1221465
#% 
#!
  
#*Competition between protein aggregation and protein complex formation.
#@Sebastian Pechmann,Emmanuel D. Levy,Gian G. Tartaglia,Michele Vendruscolo
#t2008
#cBMC Bioinformatics
#index1221466
#% 
#!
  
#*Stochastic models for the in silico simulation of synaptic processes.
#@Andrea Bracciali,Marcello Brunelli,Enrico Cataldo,Pierpaolo Degano
#t2008
#cBMC Bioinformatics
#index1221467
#% 
#!
  
#*A practical comparison of two K-Means clustering algorithms.
#@Gregory A. Wilkin,Xiuzhen Huang
#t2008
#cBMC Bioinformatics
#index1221468
#% 
#!
  
#*PARPST: a PARallel algorithm to find peptide sequence tags.
#@Sara Brunetti,Elena Lodi,Elisa Mori,Maria Stella
#t2008
#cBMC Bioinformatics
#index1221469
#% 
#!
  
#*Disambiguation of biomedical text using diverse sources of information.
#@Mark Stevenson,Yikun Guo,Robert J. Gaizauskas,David Martinez
#t2008
#cBMC Bioinformatics
#index1221470
#% 
#!
  
#*From microarray to biology: an integrated experimental, statistical and in silico analysis of how the extracellular matrix modulates the phenotype of cancer cells.
#@Mikhail G. Dozmorov,Kimberly D. Kyker,Paul J. Hauser,Ricardo Saban,David D. Buethe,Igor Dozmorov,Michael Centola,Daniel J. Culkin,Robert E. Hurst
#t2008
#cBMC Bioinformatics
#index1221471
#% 
#!
  
#*A protein interaction based model for schizophrenia study.
#@Pei-Chun Hsu,Ueng-Cheng Yang,Kuan-Hui Shih,Chih-Min Liu,Yu-Li Liu,Hai-Gwo Hwu
#t2008
#cBMC Bioinformatics
#index1221472
#% 
#!
  
#*Gene expression profile of peripheral blood mononuclear cells in response to HIV-VLPs stimulation.
#@Luigi Buonaguro,Alessandro Monaco,Eleonora Aricò,Ena Wang,Maria Lina Tornesello,George K. Lewis,Franco M. Marincola,Franco M. Buonaguro
#t2008
#cBMC Bioinformatics
#index1221473
#% 
#!
  
#*SWS: accessing SRS sites contents through Web Services.
#@Paolo Romano,Domenico Marra
#t2008
#cBMC Bioinformatics
#index1221474
#% 
#!
  
#*Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology.
#@Mikel Egaña Aranguren,Erick Antezana,Martin Kuiper,Robert Stevens
#t2008
#cBMC Bioinformatics
#index1221475
#% 
#!
  
#*Hybrid MM/SVM structural sensors for stochastic sequential data.
#@Brian Roux,Stephen Winters-Hilt
#t2008
#cBMC Bioinformatics
#index1221476
#% 
#!
  
#*A structural approach for finding functional modules from large biological networks.
#@Mutlu Mete,Fusheng Tang,Xiaowei Xu,Nurcan Yuruk
#t2008
#cBMC Bioinformatics
#index1221477
#% 
#!
  
#*Microarray analysis of gene expression during auditory hair cell regeneration in zebrafish ().
#@Julie B. Schuck,Michael E. Smith,Xiaohong Li,Nigel G. F. Cooper
#t2008
#cBMC Bioinformatics
#index1221478
#% 
#!
  
#*Identifying regulatory elements and gene boundaries with comparative genomic sequence analysis.
#@Jim Lund
#t2008
#cBMC Bioinformatics
#index1221479
#% 
#!
  
#*MCM-test: a fuzzy-set-theory-based approach to differential analysis of gene pathways.
#@Lily R. Liang,Vinay Mandal,Yi Lu,Deepak Kumar
#t2008
#cBMC Bioinformatics
#index1221480
#% 
#!
  
#*An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases.
#@Jin Ok Yang,Sohyun Hwang,Jeongsu Oh,Jong Bhak,Tae-Kwon Sohn
#t2008
#cBMC Bioinformatics
#index1221481
#% 
#!
  
#*The value of position-specific scoring matrices for assessment of protein allegenicity.
#@Shen Jean Lim,Joo Chuan Tong,Fook Tim Chew,Martti T. Tammi
#t2008
#cBMC Bioinformatics
#index1221482
#% 
#!
  
#*Automatic construction of rule-based ICD-9-CM coding systems.
#@Richárd Farkas,György Szarvas
#t2008
#cBMC Bioinformatics
#index1221483
#% 
#!
  
#*Quantitative analysis of numerical solvers for oscillatory biomolecular system models.
#@Chang F. Quo,May D. Wang
#t2008
#cBMC Bioinformatics
#index1221484
#% 
#!
  
#*Flanking signal and mature peptide residues influence signal peptide cleavage.
#@Khar Heng Choo,Shoba Ranganathan
#t2008
#cBMC Bioinformatics
#index1221485
#% 
#!
  
#*Comparative analysis of five protein-protein interaction corpora.
#@Sampo Pyysalo,Antti Airola,Juho Heimonen,Jari Björne,Filip Ginter,Tapio Salakoski
#t2008
#cBMC Bioinformatics
#index1221486
#% 
#!
  
#*In silico docking of urokinase plasminogen activator and integrins.
#@Bernard Degryse,Juan Fernández-Recio,Valentina Citro,Francescol Blasi,Maria Vittoria Cubellis
#t2008
#cBMC Bioinformatics
#index1221487
#% 
#!
  
#*GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations.
#@Qingwei Xu,Yixiang Shi,Qiang Lu,Guo-qing Zhang,Qing-ming Luo,Yixue Li
#t2008
#cBMC Bioinformatics
#index1221488
#% 
#!
  
#*How to make the most of NE dictionaries in statistical NER.
#@Yutaka Sasaki,Yoshimasa Tsuruoka,John McNaught,Sophia Ananiadou
#t2008
#cBMC Bioinformatics
#index1221489
#%20649
#%21051
#%106943
#%163809
#%335318
#%335154
#%763224
#%817115
#%896337
#%1127265
#!
  
#*Identification of transcription factor contexts in literature using machine learning approaches.
#@Hui Yang,Goran Nenadic,John A. Keane
#t2008
#cBMC Bioinformatics
#index1221490
#% 
#!
  
#*The BioScope corpus: biomedical texts annotated for uncertainty, negation and their scopes.
#@Veronika Vincze,György Szarvas,Richárd Farkas,György Móra,János Csirik
#t2008
#cBMC Bioinformatics
#index1221491
#% 
#!
  
#*Robust consensus computation.
#@Tobias Rausch,Anne-Katrin Emde,Knut Reinert
#t2008
#cBMC Bioinformatics
#index1221492
#% 
#!
  
#*QTL mapping arthritis traits in CXB mice.
#@Dana Marshall,Jeremy Peirce,Fang Zhou,Lu Lu,Robert W. Williams,Kenneth F. Manly,John Stuart
#t2008
#cBMC Bioinformatics
#index1221493
#% 
#!
  
#*Semi-automatic conversion of BioProp semantic annotation to PASBio annotation.
#@Richard Tzong-Han Tsai,Hong-Jie Dai,Chi-Hsin Huang,Wen-Lian Hsu
#t2008
#cBMC Bioinformatics
#index1221494
#% 
#!
  
#*Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes.
#@Guanglan Zhang,Asif M. Khan,Kellathur N. Srinivasan,A. T. Heiny,Kenneth X. Lee,Chee Keong Kwoh,J. Thomas August,Vladimir Brusic
#t2008
#cBMC Bioinformatics
#index1221495
#% 
#!
  
#*Proceedings of the Seventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2008.
#@Eric C. Rouchka,Julia Krushkal,Daniel Goldowitz
#t2008
#cBMC Bioinformatics
#index1221496
#% 
#!
  
#*Bioinformatics research in the Asia Pacific: a 2007 update.
#@Shoba Ranganathan,Michael Gribskov,Tin Wee Tan
#t2008
#cBMC Bioinformatics
#index1221497
#% 
#!
  
#*The unique probe selector: a comprehensive web service for probe design and oligonucleotide arrays.
#@Shu-Hwa Chen,Chen-Zen Lo,Ming-Chi Tsai,Chao A. Hsiung,Chung-Yen Lin
#t2008
#cBMC Bioinformatics
#index1221498
#% 
#!
  
#*The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies.
#@Leming M. Shi,Wendell D. Jones,Roderick V. Jensen,Stephen C. Harris,Roger Perkins,Federico M. Goodsaid,Lei Guo,Lisa J. Croner,Cecilie Boysen,Hong Fang,Feng Qian,Shashi Amur,Wenjun Bao,Catalin C. Barbacioru,Vincent Bertholet,Xiaoxi Megan Cao,Tzu-Ming Chu,Patrick J. Collins,Xiao-hui Fan,Felix W. Frueh
#t2008
#cBMC Bioinformatics
#index1221499
#% 
#!
  
#*Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis.
#@Olivo Miotto,A. T. Heiny,Tin Wee Tan,J. Thomas August,Vladimir Brusic
#t2008
#cBMC Bioinformatics
#index1221500
#% 
#!
  
#*Tandem duplication, circular permutation, molecular adaptation: how resist pests inhibitors.
#@Lesheng Kong,Shoba Ranganathan
#t2008
#cBMC Bioinformatics
#index1221501
#% 
#!
  
#*Quantitative systems-level determinants of drug targets.
#@Lixia Yao,Andrey Rzhetsky
#t2008
#cBMC Bioinformatics
#index1221502
#% 
#!
  
#*Dynamic sensitivity analysis of biological systems.
#@Wu Hsiung Wu,Feng Sheng Wang,Maw Shang Chang
#t2008
#cBMC Bioinformatics
#index1221503
#% 
#!
  
#*Revealing sequence variation patterns in rice with machine learning methods.
#@Regina Bohnert,Georg Zeller,Richard M. Clark,Kevin L. Childs,Victor Jun M. Ulat,Renee Stokowski,Dennis Ballinger,Kelly Frazer,David Cox,Richard M. Bruskiewich,C. Robin Buell,Jan Leach,Hei Leung,Kenneth L. McNally,Detlef Weigel,Gunnar Rätsch
#t2008
#cBMC Bioinformatics
#index1221504
#% 
#!
  
#*Themes in biomedical natural language processing: BioNLP08.
#@Dina Demner-Fushman,Sophia Ananiadou,K. Bretonnel Cohen,John Pestian,Jun-ichi Tsujii,Bonnie L. Webber
#t2008
#cBMC Bioinformatics
#index1221505
#% 
#!
  
#*Structuring an event ontology for disease outbreak detection.
#@Ai Kawazoe,Hutchatai Chanlekha,Mika Shigematsu,Nigel Collier
#t2008
#cBMC Bioinformatics
#index1221506
#% 
#!
  
#*Proteome discovery pipeline for mass spectrometry-based proteomics.
#@Erik S. Gough,Cheolhwan Oh,Jing He,Catherine P. Riley,Charles R. Buck,Xiang Zhang
#t2008
#cBMC Bioinformatics
#index1221507
#% 
#!
  
#*identification of binding sites from ChIP-chip data.
#@Victor X. Jin,Alina Rabinovich,Henny O'Geen,Sushma Iyengar,Peggy J. Farnham
#t2008
#cBMC Bioinformatics
#index1221508
#% 
#!
  
#*Public microarray repository semantic annotation with ontologies employing text mining and expression profile correlation.
#@David Ruau,Corinna Kolárik,Heinz-Theodor Mevissen,Emmanuel Müller,Ira Assent,Ralph Krieger,Thomas Seidl,Martin Hofmann-Apitius,Martin Zenke
#t2008
#cBMC Bioinformatics
#index1221509
#% 
#!
  
#*VarDetect: a nucleotide sequence variation exploratory tool.
#@Chumpol Ngamphiw,Supasak Kulawonganunchai,Anunchai Assawamakin,Ekachai Jenwitheesuk,Sissades Tongsima
#t2008
#cBMC Bioinformatics
#index1221510
#% 
#!
  
#*Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.
#@Huixiao Hong,Zhenqiang Su,Weigong Ge,Leming M. Shi,Roger Perkins,Hong Fang,Joshua Xu,James J. Chen,Tao Han,Jim Kaput,James C. Fuscoe,Weida Tong
#t2008
#cBMC Bioinformatics
#index1221511
#% 
#!
  
#*Random number generation for DNA-based security circuitry.
#@Christy M. Bogard,Eric C. Rouchka,Benjamin Arazi
#t2008
#cBMC Bioinformatics
#index1221512
#% 
#!
  
#*All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning.
#@Antti Airola,Sampo Pyysalo,Jari Björne,Tapio Pahikkala,Filip Ginter,Tapio Salakoski
#t2008
#cBMC Bioinformatics
#index1221513
#% 
#!
  
#*Metabolic Network Analysis: Implication And Application.
#@Syed Asad Rahman,Pardha Saradhi Jonnalagadda,Jyothi Padiadpu,Kai Hartmann,Rainer Schrader,Dietmar Schomburg
#t2005
#cBMC Bioinformatics
#index1221514
#% 
#!
  
#*N-terminal sequence-based prediction of subcellular location.
#@Evangelia I. Petsalakis,Pantelis G. Bagos,Zoi I. Litou,Stavros J. Hamodrakas
#t2005
#cBMC Bioinformatics
#index1221515
#% 
#!
  
#*Theoretical and quantitative aspects of iron acquisition by a bovine isolate of A: 3.
#@Sandy J. Macdonald,Colin W. Bayne,Malcolm Quirie,Frederick A. Lainson,Junli Liu,John C. Hodgson
#t2005
#cBMC Bioinformatics
#index1221516
#% 
#!
  
#*Reproducible Clusters from Microarray Research: Whither?
#@Nikhil R. Garge,Grier P. Page,Alan P. Sprague,Bernard S. Gorman,David B. Allison
#t2005
#cBMC Bioinformatics
#index1221517
#% 
#!
  
#*CLU: A new algorithm for EST clustering.
#@Andrey A. Ptitsyn,Winston Hide
#t2005
#cBMC Bioinformatics
#index1221518
#% 
#!
  
#*System level visualization of eQTLs and pQTLs.
#@Joanna Jakubowska,Ela Hunt,Matthew Chalmers,David Leader,Martin McBride,Anna F. Dominiczak
#t2005
#cBMC Bioinformatics
#index1221519
#% 
#!
  
#*Sequence Analysis In Promoter Regions.
#@Jeremy Austin
#t2005
#cBMC Bioinformatics
#index1221520
#% 
#!
  
#*Secondary structure assignment that accurately reflects physical and evolutionary characteristics.
#@Maria Vittoria Cubellis,Fabien Cailliez,Simon C. Lovell
#t2005
#cBMC Bioinformatics
#index1221521
#% 
#!
  
#*Evaluation of mRNA clusters.
#@Ronald L. Frank,Fikret Erçal
#t2005
#cBMC Bioinformatics
#index1221522
#% 
#!
  
#*Systematic feature evaluation for gene name recognition.
#@Jörg Hakenberg,Steffen Bickel,Conrad Plake,Ulf Brefeld,Hagen Zahn,Lukas Faulstich,Ulf Leser,Tobias Scheffer
#t2005
#cBMC Bioinformatics
#index1221523
#% 
#!
  
#*Using Comparative Genomics & RNA Structure to Find RNA Editing Sites.
#@Daniel R. Clutterbuck
#t2005
#cBMC Bioinformatics
#index1221524
#% 
#!
  
#*A Hybrid Genetic-Neural System for Predicting Protein Secondary Structure.
#@Giuliano Armano,Gianmaria Mancosu,Luciano Milanesi,Alessandro Orro,Massimiliano Saba,Eloisa Vargiu
#t2005
#cBMC Bioinformatics
#index1221525
#% 
#!
  
#*Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society.
#@Manuela Helmer-Citterich,Rita Casadio,Alessandro Guffanti,Giancarlo Mauri,Luciano Milanesi,Graziano Pesole,Giorgio Valle,Cecilia Saccone
#t2005
#cBMC Bioinformatics
#index1221526
#% 
#!
  
#*Overview of BioCreAtIvE: critical assessment of information extraction for biology.
#@Lynette Hirschman,Alexander S. Yeh,Christian Blaschke,Alfonso Valencia
#t2005
#cBMC Bioinformatics
#index1221527
#% 
#!
  
#*Exploring Parasite Gene Space.
#@James Wasmuth,Ralf Schmid,Alasdair Anthony,John Parkinson,Mark L. Blaxter
#t2005
#cBMC Bioinformatics
#index1221528
#% 
#!
  
#*ProMiner: rule-based protein and gene entity recognition.
#@Daniel Hanisch,Katrin Fundel,Heinz-Theodor Mevissen,Ralf Zimmer,Juliane Fluck
#t2005
#cBMC Bioinformatics
#index1221529
#% 
#!
  
#*CaliBayes: Integration of GRID based simulation and data resources for Bayesian calibration of biological models.
#@Richard J. Boys,Daniel Henderson,Thomas B. L. Kirkwood,Darren J. Wilkinson,W. Eryk Wolski
#t2005
#cBMC Bioinformatics
#index1221530
#% 
#!
  
#*NanoSNP: A computational platform for high throughput Quantum Dot encoded microsphere SNP genotyping.
#@Colin Clarke,Michael Malecha,Selly Saini
#t2005
#cBMC Bioinformatics
#index1221531
#% 
#!
  
#*Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.
#@Luciano Milanesi,Mauro Petrillo,Leandra Sepe,Angelo Boccia,Nunzio D'Agostino,Myriam Passamano,Salvatore Di Nardo,Gianluca Tasco,Rita Casadio,Giovanni Paolella
#t2005
#cBMC Bioinformatics
#index1221532
#% 
#!
  
#*An integrated approach of immunogenomics and bioinformatics to identify new Tumor Associated Antigens (TAA) for mammary cancer immunological prevention.
#@Federica Cavallo,Annalisa Astolfi,Manuela Iezzi,Francesca Cordero,Pierluigi Lollini,Guido Forni,Raffaele Calogero
#t2005
#cBMC Bioinformatics
#index1221533
#% 
#!
  
#*Stochastic Petri Nets in Systems Biology.
#@Ole Schulz-Trieglaff
#t2005
#cBMC Bioinformatics
#index1221534
#% 
#!
  
#*Genome-wide estimation of gender differences in the gene expression of human livers: Statistical design and analysis.
#@Robert R. Delongchamp,Cruz Velasco,Stacey Dial,Angela J. Harris
#t2005
#cBMC Bioinformatics
#index1221535
#% 
#!
  
#*Improving interoperability between microbial information and sequence databases.
#@Paolo Romano,Peter Dawyndt,Francesca Piersigilli,Jean Swings
#t2005
#cBMC Bioinformatics
#index1221536
#% 
#!
  
#*NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between and .
#@Davide Rambaldi,Alessandro Guffanti,Paolo Morandi,Giuseppe Cassata
#t2005
#cBMC Bioinformatics
#index1221537
#% 
#!
  
#*Computational Analysis of Insulin in the Ageing Fruit Fly.
#@John Cumbers,J. Douglas Armstrong
#t2005
#cBMC Bioinformatics
#index1221538
#% 
#!
  
#*A quantization method based on threshold optimization for microarray short time series.
#@Barbara Di Camillo,Fatima Sanchez-Cabo,Gianna Toffolo,Sreekumaran K. Nair,Zlatko Trajanoski,Claudio Cobelli
#t2005
#cBMC Bioinformatics
#index1221539
#% 
#!
  
#*Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential.
#@Leming M. Shi,Weida Tong,Hong Fang,Uwe Scherf,Jing Han,Raj K. Puri,Felix W. Frueh,Federico M. Goodsaid,Lei Guo,Zhenqiang Su,Tao Han,James C. Fuscoe,Z. Alex Xu,Tucker A. Patterson,Huixiao Hong,Qian Xie,Roger Perkins,James J. Chen,Daniel A. Casciano
#t2005
#cBMC Bioinformatics
#index1221540
#% 
#!
  
#*Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS).
#@Huixiao Hong,Yvonne P. Dragan,Joshua Epstein,Candee Teitel,Bangzheng Chen,Qian Xie,Hong Fang,Leming M. Shi,Roger Perkins,Weida Tong
#t2005
#cBMC Bioinformatics
#index1221541
#% 
#!
  
#*Data preparation and interannotator agreement: BioCreAtIvE Task 1B.
#@Marc E. Colosimo,Alexander A. Morgan,Alexander S. Yeh,Jeffrey B. Colombe,Lynette Hirschman
#t2005
#cBMC Bioinformatics
#index1221542
#% 
#!
  
#*Automating Genomic Data Mining via a Sequence-based Matrix Format and Associative Rule Set.
#@Jonathan D. Wren,David Johnson,Le Gruenwald
#t2005
#cBMC Bioinformatics
#index1221543
#% 
#!
  
#*BioCreAtIvE Task 1A: gene mention finding evaluation.
#@Alexander S. Yeh,Alexander A. Morgan,Marc E. Colosimo,Lynette Hirschman
#t2005
#cBMC Bioinformatics
#index1221544
#% 
#!
  
#*Text-mining, milk proteins and nutraceutical potential - the MilkER project.
#@Stephen Edwards,Bonnie L. Webber,Carl Holt,Lindsay Sawyer
#t2005
#cBMC Bioinformatics
#index1221545
#% 
#!
  
#*Mining protein function from text using term-based support vector machines.
#@Simon B. Rice,Goran Nenadic,Benjamin J. Stapley
#t2005
#cBMC Bioinformatics
#index1221546
#% 
#!
  
#*Living longer by dieting: analysis of transcriptional response after caloric restriction.
#@Nicola D. Kerrison,Colin Selman,Steven J. Lingard,Janet M. Thornton,Linda Partridge,Dominic J. Withers
#t2005
#cBMC Bioinformatics
#index1221547
#% 
#!
  
#*High performance workflow implementation for protein surface characterization using grid technology.
#@Ivan Merelli,Giulia Morra,Daniele D'Agostino,Andrea Clematis,Luciano Milanesi
#t2005
#cBMC Bioinformatics
#index1221548
#% 
#!
  
#*Time-series Explorer: An Animated Information Visualisation for Microarray Time-course Data.
#@Paul Craig,Jessie B. Kennedy,Andrew Cumming
#t2005
#cBMC Bioinformatics
#index1221549
#% 
#!
  
#*Recognition of protein/gene names from text using an ensemble of classifiers.
#@Guodong Zhou,Dan Shen,Jie Zhang,Jian Su,Soon-Heng Tan
#t2005
#cBMC Bioinformatics
#index1221550
#% 
#!
  
#*Browsing Isolated Population Data.
#@Gianmaria Mancosu,Massimiliano Cosso,Francesca Marras,Cesare Cappio Borlino,Giuseppe Ledda,Teresa Manias,Mauro Adamo,Donatella Serra,Paola M. Melis,Mario Pirastu
#t2005
#cBMC Bioinformatics
#index1221551
#% 
#!
  
#*GENETAG: a tagged corpus for gene/protein named entity recognition.
#@Lorraine K. Tanabe,Natalie Xie,Lynne H. Thom,Wayne Matten,W. John Wilbur
#t2005
#cBMC Bioinformatics
#index1221552
#% 
#!
  
#*Integration of open source software tools for the in silico design of metabolic pathways using flux balance analysis - an application to the production of recombinant human proteins.
#@Ana Sofia Figueiredo
#t2005
#cBMC Bioinformatics
#index1221553
#% 
#!
  
#*Mining published lists of cancer related microarray experiments: Identification of a gene expression signature having a critical role in cell-cycle control.
#@Giacomo Finocchiaro,Francesco Mancuso,Heiko Müller
#t2005
#cBMC Bioinformatics
#index1221554
#% 
#!
  
#*Query3d: a new method for high-throughput analysis of functional residues in protein structures.
#@Gabriele Ausiello,Allegra Via,Manuela Helmer-Citterich
#t2005
#cBMC Bioinformatics
#index1221555
#% 
#!
  
#*The Important Role of Calcium in Regulation of Adhesion Disassembly and Cell Migration: Mathematical Modelling.
#@Najl Valeyev,Andrei Skorinkin,Kristy Downing,Iain Campbell,Nikolai Kotov
#t2005
#cBMC Bioinformatics
#index1221556
#% 
#!
  
#*The evolutionary origin of protein complexes.
#@Jose Pereira-Leal
#t2005
#cBMC Bioinformatics
#index1221557
#% 
#!
  
#*Automatically annotating documents with normalized gene lists.
#@Jeremiah Crim,Ryan T. McDonald,Fernando Pereira
#t2005
#cBMC Bioinformatics
#index1221558
#% 
#!
  
#*An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
#@Evelyn Camon,Daniel Barrell,Emily Dimmer,Vivian Lee,Michele Magrane,John Maslen,David Binns,Rolf Apweiler
#t2005
#cBMC Bioinformatics
#index1221559
#% 
#!
  
#*Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot.
#@Frédéric Ehrler,Antoine Geissbühler,Antonio Jimeno-Yepes,Patrick Ruch
#t2005
#cBMC Bioinformatics
#index1221560
#% 
#!
  
#*CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis.
#@Yong Tang,Yingfeng Chen,Cheryl F. Lichti,Roger A. Hall,Kevin D. Raney,Steven F. Jennings
#t2005
#cBMC Bioinformatics
#index1221561
#% 
#!
  
#*GPX - An Integrative Environment for the Storage and Retrieval of Raw and Processed Microarray Data.
#@Graeme Grimes
#t2005
#cBMC Bioinformatics
#index1221562
#% 
#!
  
#*A simple approach for protein name identification: prospects and limits.
#@Katrin Fundel,Daniel Güttler,Ralf Zimmer,Joannis Apostolakis
#t2005
#cBMC Bioinformatics
#index1221563
#% 
#!
  
#*HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms.
#@Maria Persico,Arnaud Ceol,Caius Gavrila,Robert Hoffmann,Arnaldo Florio,Gianni Cesareni
#t2005
#cBMC Bioinformatics
#index1221564
#% 
#!
  
#*MicroGen: a MIAME compliant web system for microarray experiment information and workflow management.
#@Sarah Burgarella,Dario Cattaneo,Francesco Pinciroli,Marco Masseroli
#t2005
#cBMC Bioinformatics
#index1221565
#% 
#!
  
#*BioCreAtIvE Task1A: entity identification with a stochastic tagger.
#@Shuhei Kinoshita,K. Bretonnel Cohen,Philip V. Ogren,Lawrence Hunter
#t2005
#cBMC Bioinformatics
#index1221566
#% 
#!
  
#*Transcription regulation: a genomic network.
#@Nicholas M. Luscombe
#t2005
#cBMC Bioinformatics
#index1221567
#% 
#!
  
#*Protein annotation as term categorization in the gene ontology using word proximity networks.
#@Karin Verspoor,Judith Cohn,Cliff Joslyn,Susan M. Mniszewski,Andreas Rechtsteiner,Luis Mateus Rocha,Tiago Simas
#t2005
#cBMC Bioinformatics
#index1221568
#% 
#!
  
#*Overview of BioCreAtIvE task 1B: normalized gene lists.
#@Lynette Hirschman,Marc E. Colosimo,Alexander A. Morgan,Alexander S. Yeh
#t2005
#cBMC Bioinformatics
#index1221569
#% 
#!
  
#*Codon pair bias in prokaryotic and eukaryotic genomes.
#@Ross Buchan,Ian Stansfield
#t2005
#cBMC Bioinformatics
#index1221570
#% 
#!
  
#*Evolution@home: Global computing quantifies evolution due to Muller's ratchet.
#@Laurence Loewe
#t2005
#cBMC Bioinformatics
#index1221571
#% 
#!
  
#*A neural strategy for the inference of SH3 domain-peptide interaction specificity.
#@Enrico Ferraro,Allegra Via,Gabriele Ausiello,Manuela Helmer-Citterich
#t2005
#cBMC Bioinformatics
#index1221572
#% 
#!
  
#*Computational inference of regulator activity in a single input motif from gene expression data.
#@Raya Khanin,Veronica Vinciotti,Vassilis Mersinias,Colin P. Smith,Ernst Wit
#t2005
#cBMC Bioinformatics
#index1221573
#% 
#!
  
#*Prioritisation of Disease Gene Candidates: A Systems Biology Approach.
#@Frances S. Turner
#t2005
#cBMC Bioinformatics
#index1221574
#% 
#!
  
#*Distinguishing between enzyme sequences & non-enzymes without using alignments.
#@Ajanthah Sangaralingam,Andrew J. Doig
#t2005
#cBMC Bioinformatics
#index1221575
#% 
#!
  
#*Identifying gene and protein mentions in text using conditional random fields.
#@Ryan T. McDonald,Fernando Pereira
#t2005
#cBMC Bioinformatics
#index1221576
#% 
#!
  
#*Learning Statistical Models for Annotating Proteins with Function Information using Biomedical Text.
#@Soumya Ray,Mark Craven
#t2005
#cBMC Bioinformatics
#index1221577
#% 
#!
  
#*Jalview: Visualization and Analysis of Molecular Sequences, Alignments, and Structures.
#@Andrew M. Waterhouse,James B. Procter,David M. A. Martin,Geoffrey J. Barton
#t2005
#cBMC Bioinformatics
#index1221578
#% 
#!
  
#*Evaluation of BioCreAtIvE assessment of task 2.
#@Christian Blaschke,Eduardo Andrés León,Martin Krallinger,Alfonso Valencia
#t2005
#cBMC Bioinformatics
#index1221579
#% 
#!
  
#*A sentence sliding window approach to extract protein annotations from biomedical articles.
#@Martin Krallinger,Maria Padron,Alfonso Valencia
#t2005
#cBMC Bioinformatics
#index1221580
#% 
#!
  
#*Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists.
#@Marco Masseroli,Osvaldo Galati,Mauro Manzotti,Karina Gibert,Francesco Pinciroli
#t2005
#cBMC Bioinformatics
#index1221581
#% 
#!
  
#*Gene Expression-Based Cross Species Tissue Mapping.
#@Ajit Kumar Gopee
#t2005
#cBMC Bioinformatics
#index1221582
#% 
#!
  
#*Nonlinear Data Mining of Microarray Data Using Michaelis Menten Functions.
#@Dov J. Stekel,Tim W. Overton,Jon L. Hobman,Charles W. Penn,Jeff A. Cole,Chrystala Constantinidou
#t2005
#cBMC Bioinformatics
#index1221583
#% 
#!
  
#*Decision Forest Analysis of 61 Single Nucleotide Polymorphisms in a Case-Control Study of Esophageal Cancer; a novel method.
#@Qian Xie,Luke D. Ratnasinghe,Huixiao Hong,Roger Perkins,Ze-Zhong Tang,Nan Hu,Philip R. Taylor,Weida Tong
#t2005
#cBMC Bioinformatics
#index1221584
#% 
#!
  
#*Bioinformatics in phylogeography: analitical methods and applications.
#@Oscar Moya Mesa,Hermans Goar Contreras Díaz,Pedro Oromí Masoliver,Carlos Juan Clar
#t2005
#cBMC Bioinformatics
#index1221585
#% 
#!
  
#*ParPEST: a pipeline for EST data analysis based on parallel computing.
#@Nunzio D'Agostino,Mario Aversano,Maria Luisa Chiusano
#t2005
#cBMC Bioinformatics
#index1221586
#% 
#!
  
#*Nestor3D: multiple alignment of protein structures based on ligand or prosthetic group position.
#@Jean-Christophe Nebel
#t2005
#cBMC Bioinformatics
#index1221587
#% 
#!
  
#*Automated Terminological and Structural Analysis of Human-Mouse Anatomical Ontology Mappings.
#@Sarah Luger,J. Stuart Aitken,Bonnie L. Webber
#t2005
#cBMC Bioinformatics
#index1221588
#% 
#!
  
#*Exploring the boundaries: gene and protein identification in biomedical text.
#@Jenny Rose Finkel,Shipra Dingare,Christopher D. Manning,Malvina Nissim,Beatrice Alex,Claire Grover
#t2005
#cBMC Bioinformatics
#index1221589
#% 
#!
  
#*Regularized Least Squares Cancer Classifiers from DNA microarray data.
#@Nicola Ancona,Rosalia Maglietta,Annarita D'Addabbo,Sabino Liuni,Graziano Pesole
#t2005
#cBMC Bioinformatics
#index1221590
#% 
#!
  
#*Investigation of mRNA Splicing in Saccharomyces cerevisiae using Microarrays.
#@J. David Barrass,Jean D. Beggs
#t2005
#cBMC Bioinformatics
#index1221591
#% 
#!
  
#*ESTree db: a Tool for Peach Functional Genomics.
#@Barbara Lazzari,Andrea Caprera,Alberto Vecchietti,Alessandra Stella,Luciano Milanesi,Carlo Pozzi
#t2005
#cBMC Bioinformatics
#index1221592
#% 
#!
  
#*PROVAT - a versatile tool for Voronoi tessellation analysis of protein structures and complexes.
#@Swanand P. Gore,David F. Burke,Tom L. Blundell
#t2005
#cBMC Bioinformatics
#index1221593
#% 
#!
  
#*Extraction of Genetic Networks (GN) Using Static Bayesian Belief Networks From Genome-Wide Temporal Microarray Data.
#@Judit Kumuthini
#t2005
#cBMC Bioinformatics
#index1221594
#% 
#!
  
#*Modelling Lipid Metabolism to Improve Healthy Ageing.
#@Mark Mc Auley,Janette Jones,Darren Wilkinson,Tom Kirkwood
#t2005
#cBMC Bioinformatics
#index1221595
#% 
#!
  
#*HmtDB, a Human Mitochondrial Genomic Resource Based on Variability Studies Supporting Population Genetics and Biomedical Research.
#@Marcella Attimonelli,Matteo Accetturo,Monica Santamaria,Daniela Lascaro,Gaetano Scioscia,Graziano Pappadà,Luigi Russo,Luigi Zanchetta,Mila Tommaseo Ponzetta
#t2005
#cBMC Bioinformatics
#index1221596
#% 
#!
  
#*Text Detective: a rule-based system for gene annotation in biomedical texts.
#@Javier Tamames
#t2005
#cBMC Bioinformatics
#index1221597
#% 
#!
  
#*A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins.
#@Piero Fariselli,Pier Luigi Martelli,Rita Casadio
#t2005
#cBMC Bioinformatics
#index1221598
#% 
#!
  
#*functional characterization of a double histone fold domain from the virus 1.
#@Claudio Greco,Piercarlo Fantucci,Luca De Gioia
#t2005
#cBMC Bioinformatics
#index1221599
#% 
#!
  
#*Modelling the interaction of steroid receptors with endocrine disrupting chemicals.
#@Pasqualina D'Ursi,Erika Salvi,Paola Fossa,Luciano Milanesi,Ermanna Rovida
#t2005
#cBMC Bioinformatics
#index1221600
#% 
#!
  
#*Gene/protein name recognition based on support vector machine using dictionary as features.
#@Tomohiro Mitsumori,Sevrani Fation,Masaki Murata,Kouichi Doi,Hirohumi Doi
#t2005
#cBMC Bioinformatics
#index1221601
#% 
#!
  
#*ZF-Human Disease Database: A Database for Zebrafish Models of Human Genetic Diseases.
#@Pedro Coutinho
#t2005
#cBMC Bioinformatics
#index1221602
#% 
#!
  
#*Biological clocks in theory and experiments.
#@Andrew J. Millar
#t2005
#cBMC Bioinformatics
#index1221603
#% 
#!
  
#*Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling.
#@Hong Fang,Weida Tong,Roger Perkins,Leming M. Shi,Huixiao Hong,X. Cao,Qian Xie,S. H. Yim,J. M. Ward,Henry C. Pitot,Yvonne P. Dragan
#t2005
#cBMC Bioinformatics
#index1221604
#% 
#!
  
#*Genomics and Pathway Biology - a new post-genomics M.Sc. programme from Edinburgh University.
#@Douglas Roy,Peter Ghazal
#t2005
#cBMC Bioinformatics
#index1221605
#% 
#!
  
#*Amino-Acid Substitutions In Membrane Proteins: Applications To Homology Recognition And Comparative Modelling.
#@Younes Mokrab,Kenji Mizuguchi
#t2005
#cBMC Bioinformatics
#index1221606
#% 
#!
  
#*Proceedings of the Second Annual Conference of the MidSouth Computational Biology and Bioinformatics Society.
#@Jonathan D. Wren,William Slikker Jr.
#t2005
#cBMC Bioinformatics
#index1221607
#% 
#!
  
#*Extracting Genetic Pathways From Text and Grounding at the Spatio-Temporal Level.
#@Gail Sinclair,Bonnie L. Webber,Duncan Davidson
#t2005
#cBMC Bioinformatics
#index1221608
#% 
#!
  
#*Finding genomic ontology terms in text using evidence content.
#@Francisco M. Couto,Mário J. Silva,Pedro Coutinho
#t2005
#cBMC Bioinformatics
#index1221609
#% 
#!
  
#*Speeding Disease Gene Discovery with SUSPECTS.
#@Euan A. Adie
#t2005
#cBMC Bioinformatics
#index1221610
#% 
#!
  
#*Use Of Neural Networks To Predict And Analyse Membrane Proteins In The Proteome.
#@Subrata K. Bose,Hassan Kazemian,Kenneth White,Antony Browne
#t2005
#cBMC Bioinformatics
#index1221611
#% 
#!
  
#*Inferring gene regulatory networks from classified microarray data: Initial results.
#@J. Stuart Aitken,Thanyaluk Jirapech-Umpai,Rónán Daly
#t2005
#cBMC Bioinformatics
#index1221612
#% 
#!
  
#*Web services and workflow management for biological resources.
#@Paolo Romano,Domenico Marra,Luciano Milanesi
#t2005
#cBMC Bioinformatics
#index1221613
#% 
#!
  
#*A microarray study of MPP-treated PC12 Cells: Mechanisms of toxicity (MOT) analysis using bioinformatics tools.
#@Zengjun Xu,Tucker A. Patterson,Jonathan D. Wren,Tao Han,Leming M. Shi,Helen Duhart,Syed F. Ali,William Slikker Jr.
#t2005
#cBMC Bioinformatics
#index1221614
#% 
#!
  
#*Microarray scanner calibration curves: characteristics and implications.
#@Leming M. Shi,Weida Tong,Zhenqiang Su,Tao Han,Jing Han,Raj K. Puri,Hong Fang,Felix W. Frueh,Federico M. Goodsaid,Lei Guo,William S. Branham,James J. Chen,Z. Alex Xu,Stephen C. Harris,Huixiao Hong,Qian Xie,Roger Perkins,James C. Fuscoe
#t2005
#cBMC Bioinformatics
#index1221615
#% 
#!
  
#*An assessment of false discovery rates and statistical significance in label-free quantitative proteomics with combined filters.
#@Qingbo Li,Bryan A. P. Roxas
#t2009
#cBMC Bioinformatics
#index1266976
#% 
#!
  
#*Is searching full text more effective than searching abstracts?
#@Jimmy J. Lin
#t2009
#cBMC Bioinformatics
#index1266977
#% 
#!
  
#*Effects of sample size on robustness and prediction accuracy of a prognostic gene signature.
#@Seon-Young Kim
#t2009
#cBMC Bioinformatics
#index1266978
#% 
#!
  
#*Ab initio and homology based prediction of protein domains by recursive neural networks.
#@Ian Walsh,Alberto J. M. Martin,Catherine Mooney,Enrico Rubagotti,Alessandro Vullo,Gianluca Pollastri
#t2009
#cBMC Bioinformatics
#index1266979
#% 
#!
  
#*Adaptable data management for systems biology investigations.
#@John Boyle,Hector Rovira,Christopher C. Cavnor,David B. Burdick,Sarah A. Killcoyne,Ilya Shmulevich
#t2009
#cBMC Bioinformatics
#index1266980
#% 
#!
  
#*Regularized gene selection in cancer microarray meta-analysis.
#@Shuangge Ma,Jian Huang
#t2009
#cBMC Bioinformatics
#index1266981
#% 
#!
  
#*Incorporating functional inter-relationships into protein function prediction algorithms.
#@Gaurav Pandey,Chad L. Myers,Vipin Kumar
#t2009
#cBMC Bioinformatics
#index1266982
#% 
#!
  
#*Accessibility and partner number of protein residues, their relationship and a webserver, ContPlot for their display.
#@Arumay Pal,Ranjit Prasad Bahadur,Partha Sarathi Ray,Pinak Chakrabarti
#t2009
#cBMC Bioinformatics
#index1266983
#% 
#!
  
#*CSA: An efficient algorithm to improve circular DNA multiple alignment.
#@Francisco Fernandes,Luísa Pereira,Ana T. Freitas
#t2009
#cBMC Bioinformatics
#index1266984
#% 
#!
  
#*IDSS: deformation invariant signatures for molecular shape comparison.
#@Yu-Shen Liu,Yi Fang,Karthik Ramani
#t2009
#cBMC Bioinformatics
#index1266985
#% 
#!
  
#*A bag-of-words approach for gene expression pattern annotation.
#@Shuiwang Ji,Ying-Xin Li,Zhi-Hua Zhou,Sudhir Kumar,Jieping Ye
#t2009
#cBMC Bioinformatics
#index1266986
#% 
#!
  
#*Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach.
#@Alexandre P. Francisco,Miguel Bugalho,Mário Ramirez,João A. Carriço
#t2009
#cBMC Bioinformatics
#index1266987
#% 
#!
  
#*Information criterion-based clustering with order-restricted candidate profiles in short time-course microarray experiments.
#@Tianqing Liu,Nan Lin,Ningzhong Shi,Baoxue Zhang
#t2009
#cBMC Bioinformatics
#index1266988
#% 
#!
  
#*ETISEQ - an algorithm for automated elution time ion sequencing of concurrently fragmented peptides for mass spectrometry-based proteomics.
#@Jason W. H. Wong,Alexander B. Schwahn,Kevin M. Downard
#t2009
#cBMC Bioinformatics
#index1266989
#% 
#!
  
#*Motivated Proteins: A web application for studying small three-dimensional protein motifs.
#@David P. Leader,E. James Milner-White
#t2009
#cBMC Bioinformatics
#index1266990
#% 
#!
  
#*Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis.
#@Roberto T. Arrial,Roberto C. Togawa,Marcelo M. Brigido
#t2009
#cBMC Bioinformatics
#index1266991
#% 
#!
  
#*Core Hunter: an algorithm for sampling genetic resources based on multiple genetic measures.
#@Chris Thachuk,Jose Crossa,Jorge Franco,Susanne Dreisigacker,Marilyn Warburton,Guy F. Davenport
#t2009
#cBMC Bioinformatics
#index1266992
#% 
#!
  
#*ACID: annotation of cassette and integron data.
#@Michael J. Joss,Jeremy E. Koenig,Maurizio Labbate,Martin F. Polz,Michael R. Gillings,Harold W. Stokes,W. Ford Doolittle,Yan Boucher
#t2009
#cBMC Bioinformatics
#index1266993
#% 
#!
  
#*Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins.
#@Pawel Durek,Christian Schudoma,Wolfram Weckwerth,Joachim Selbig,Dirk Walther
#t2009
#cBMC Bioinformatics
#index1266994
#% 
#!
  
#*SNAD: Sequence Name Annotation-based Designer.
#@Igor A. Sidorov,Denis A. Reshetov,Alexander E. Gorbalenya
#t2009
#cBMC Bioinformatics
#index1266995
#% 
#!
  
#*Improving the analysis of designed studies by combining statistical modelling with study design information.
#@Uwe Thissen,Suzan Wopereis,Sjoerd A. A. van den Berg,Ivana Bobeldijk,Robert Kleemann,Teake Kooistra,Ko Willems van Dijk,Ben van Ommen,Age K. Smilde
#t2009
#cBMC Bioinformatics
#index1266996
#% 
#!
  
#*Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology.
#@J. B. Brown,Tatsuya Akutsu
#t2009
#cBMC Bioinformatics
#index1266997
#% 
#!
  
#*NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction.
#@Alex N. Nguyen Ba,Anastassia Pogoutse,Nicholas Provart,Alan M. Moses
#t2009
#cBMC Bioinformatics
#index1266998
#% 
#!
  
#*Improved homology-driven computational validation of protein-protein interactions motivated by the evolutionary gene duplication and divergence hypothesis.
#@Christian Frech,Michael Kommenda,Viktoria Dorfer,Thomas Kern,Helmut Hintner,Johann W. Bauer,Kamil Önder
#t2009
#cBMC Bioinformatics
#index1266999
#% 
#!
  
#*Incorporating pathway information into boosting estimation of high-dimensional risk prediction models.
#@Harald Binder,Martin Schumacher
#t2009
#cBMC Bioinformatics
#index1267000
#% 
#!
  
#*Identifying significant temporal variation in time course microarray data without replicates.
#@Stephen C. Billups,Margaret C. Neville,Michael Rudolph,Weston Porter,Pepper Schedin
#t2009
#cBMC Bioinformatics
#index1267001
#% 
#!
  
#*Robust MS quantification method for phospho-peptides using O/O labeling.
#@Claus A. Andersen,Stefano Gotta,Letizia Magnoni,Roberto Raggiaschi,Andreas Kremer,Georg C. Terstappen
#t2009
#cBMC Bioinformatics
#index1267002
#% 
#!
  
#*Cyndi: a multi-objective evolution algorithm based method for bioactive molecular conformational generation.
#@Xiaofeng Liu,Fang Bai,Sisheng Ouyang,Xicheng Wang,Honglin Li,Hualiang Jiang
#t2009
#cBMC Bioinformatics
#index1267003
#% 
#!
  
#*Prediction of protein-protein interaction types using association rule based classification.
#@Sung-Hee Park,José A. Reyes,David R. Gilbert,Ji Woong Kim,Sangsoo Kim
#t2009
#cBMC Bioinformatics
#index1267004
#% 
#!
  
#*OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif.
#@Amar Drawid,Nupur Gupta,Vijayalakshmi H. Nagaraj,Céline Gélinas,Anirvan M. Sengupta
#t2009
#cBMC Bioinformatics
#index1267005
#% 
#!
  
#*Representative transcript sets for evaluating a translational initiation sites predictor.
#@Jia Zeng,Reda Alhajj,Douglas J. Demetrick
#t2009
#cBMC Bioinformatics
#index1267006
#% 
#!
  
#*Prediction of guide strand of microRNAs from its sequence and secondary structure.
#@Firoz Ahmed,Hifzur Rahman Ansari,Gajendra P. S. Raghava
#t2009
#cBMC Bioinformatics
#index1267007
#% 
#!
  
#*Bayesian optimal discovery procedure for simultaneous significance testing.
#@Jing Cao,Xian-Jin Xie,Song Zhang,Angelique Whitehurst,Michael A. White
#t2009
#cBMC Bioinformatics
#index1267008
#% 
#!
  
#*Estimation of tumor heterogeneity using CGH array data.
#@Kai Wang,Jian Li,Shengting Li,Lars Bolund,Carsten Wiuf
#t2009
#cBMC Bioinformatics
#index1267009
#% 
#!
  
#*The development of a comparison approach for Illumina bead chips unravels unexpected challenges applying newest generation microarrays.
#@Daniela Eggle,Svenja Debey-Pascher,Marc Beyer,Joachim L. Schultze
#t2009
#cBMC Bioinformatics
#index1267010
#% 
#!
  
#*Measure of synonymous codon usage diversity among genes in bacteria.
#@Haruo Suzuki,Rintaro Saito,Masaru Tomita
#t2009
#cBMC Bioinformatics
#index1267011
#% 
#!
  
#*Incorporating rich background knowledge for gene named entity classification and recognition.
#@Yanpeng Li,Hongfei Lin,Zhihao Yang
#t2009
#cBMC Bioinformatics
#index1267012
#% 
#!
  
#*Fpocket: An open source platform for ligand pocket detection.
#@Vincent Le Guilloux,Peter Schmidtke,Pierre Tufféry
#t2009
#cBMC Bioinformatics
#index1267013
#% 
#!
  
#*Assessing and selecting gene expression signals based upon the quality of the measured dynamics.
#@Eric Yang,Ioannis P. Androulakis
#t2009
#cBMC Bioinformatics
#index1267014
#% 
#!
  
#*EMMA 2 - A MAGE-compliant system for the collaborative analysis and integration of microarray data.
#@Michael Dondrup,Stefan P. Albaum,Thasso Griebel,Kolja Henckel,Sebastian Jünemann,Tim Kahlke,Christiane K. Kleindt,Helge Küster,Burkhard Linke,Dominik Mertens,Virginie Mittard-Runte,Heiko Neuweger,Kai J. Runte,Andreas Tauch,Felix Tille,Alfred Pühler,Alexander Goesmann
#t2009
#cBMC Bioinformatics
#index1267015
#% 
#!
  
#*Identifying differential exon splicing using linear models and correlation coefficients.
#@Sonia H. Shah,Jacqueline A. Pallas
#t2009
#cBMC Bioinformatics
#index1267016
#% 
#!
  
#*An improved ontological representation of dendritic cells as a paradigm for all cell types.
#@Anna Maria Masci,Cecilia N. Arighi,Alexander D. Diehl,Anne E. Lieberman,Chris Mungall,Richard H. Scheuermann,Barry Smith,Lindsay G. Cowell
#t2009
#cBMC Bioinformatics
#index1267017
#% 
#!
  
#*Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.
#@Sam Zaremba,Mila Ramos-Santacruz,Thomas Hampton,Panna Shetty,Joel Fedorko,Jon Whitmore,John M. Greene,Nicole T. Perna,Jeremy D. Glasner,Guy Plunkett III,Matthew Shaker,David Pot
#t2009
#cBMC Bioinformatics
#index1267018
#% 
#!
  
#*flowCore: a Bioconductor package for high throughput flow cytometry.
#@Florian Hahne,Nolwenn LeMeur,Ryan R. Brinkman,Byron Ellis,Perry Haaland,Deepayan Sarkar,Josef Spidlen,Errol Strain,Robert Gentleman
#t2009
#cBMC Bioinformatics
#index1267019
#% 
#!
  
#*ContDist: a tool for the analysis of quantitative gene and promoter properties.
#@Michael Hackenberg,Gorka Lasso,Rune Matthiesen
#t2009
#cBMC Bioinformatics
#index1267020
#% 
#!
  
#*GMFilter and SXTestPlate: software tools for improving the SNPlex genotyping system.
#@Markus Teuber,Michael H. Wenz,Stefan Schreiber,Andre Franke
#t2009
#cBMC Bioinformatics
#index1267021
#% 
#!
  
#*Automics: an integrated platform for NMR-based metabonomics spectral processing and data analysis.
#@Tao Wang,Kang Shao,Qinying Chu,Yanfei Ren,Yiming Mu,Lijia Qu,Jie He,Changwen Jin,Bin Xia
#t2009
#cBMC Bioinformatics
#index1267022
#% 
#!
  
#*Structural motifs recurring in different folds recognize the same ligand fragments.
#@Gabriele Ausiello,Pier Federico Gherardini,Elena Gatti,Ottaviano Incani,Manuela Helmer-Citterich
#t2009
#cBMC Bioinformatics
#index1267023
#% 
#!
  
#*Combining specificity determining and conserved residues improves functional site prediction.
#@Olga V. Kalinina,Mikhail S. Gelfand,Robert B. Russell
#t2009
#cBMC Bioinformatics
#index1267024
#% 
#!
  
#*Computational analysis of the interaction between transcription factors and the predicted secreted proteome of the yeast .
#@Otávio J. B. Brustolini,Luciano G. Fietto,Cosme D. Cruz,Flávia M. L. Passos
#t2009
#cBMC Bioinformatics
#index1267025
#% 
#!
  
#*Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy.
#@Dimitra Alexopoulou,Bill Andreopoulos,Heiko Dietze,Andreas Doms,Fabien L. Gandon,Jörg Hakenberg,Khaled Khelif,Michael Schroeder,Thomas Wächter
#t2009
#cBMC Bioinformatics
#index1267026
#% 
#!
  
#*R/BHC: fast Bayesian hierarchical clustering for microarray data.
#@Richard S. Savage,Katherine A. Heller,Yang Xu,Zoubin Ghahramani,William M. Truman,Murray Grant,Katherine J. Denby,David L. Wild
#t2009
#cBMC Bioinformatics
#index1267027
#% 
#!
  
#*BSMAP: whole genome bisulfite sequence MAPping program.
#@Yuanxin Xi,Wei Li
#t2009
#cBMC Bioinformatics
#index1267028
#% 
#!
  
#*DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data.
#@Daniel Glez-Peña,Rodrigo Álvarez,Fernando Díaz,Florentino Fdez-Riverola
#t2009
#cBMC Bioinformatics
#index1267029
#% 
#!
  
#*Orymold: ontology based gene expression data integration and analysis tool applied to rice.
#@Jaume Mercadé,Antonio Espinosa,José-Enrique Adsuara,Rosa Adrados,Jordi Segura,Tamara Maes
#t2009
#cBMC Bioinformatics
#index1267030
#% 
#!
  
#*EDGAR: A software framework for the comparative analysis of prokaryotic genomes.
#@Jochen Blom,Stefan P. Albaum,Daniel Doppmeier,Alfred Pühler,Frank-Jörg Vorhölter,Martha Zakrzewski,Alexander Goesmann
#t2009
#cBMC Bioinformatics
#index1267031
#% 
#!
  
#*: software for identification of the minimum number of polymorphisms required for haplotype and genotype differentiation.
#@Ursula K. Frei,Bernd Wollenweber,Thomas Lübberstedt
#t2009
#cBMC Bioinformatics
#index1267032
#% 
#!
  
#*STAMP: Extensions to the STADEN sequence analysis package for high throughput interactive microsatellite marker design.
#@Lars Kraemer,Bánk Beszteri,Steffi Gäbler-Schwarz,Christoph Held,Florian Leese,Christoph Mayer,Kevin Pöhlmann,Stephan Frickenhaus
#t2009
#cBMC Bioinformatics
#index1267033
#% 
#!
  
#*GenomeGraphs: integrated genomic data visualization with R.
#@Steffen Durinck,James H. Bullard,Paul T. Spellman,Sandrine Dudoit
#t2009
#cBMC Bioinformatics
#index1267034
#% 
#!
  
#*Effect of false positive and false negative rates on inference of binding target conservation across different conditions and species from ChIP-chip data.
#@Debayan Datta,Hongyu Zhao
#t2009
#cBMC Bioinformatics
#index1267035
#% 
#!
  
#*Extracting biologically significant patterns from short time series gene expression data.
#@Alain B. Tchagang,Kevin V. Bui,Thomas McGinnis,Panayiotis V. Benos
#t2009
#cBMC Bioinformatics
#index1267036
#% 
#!
  
#*Computing paths and cycles in biological interaction graphs.
#@Steffen Klamt,Axel von Kamp
#t2009
#cBMC Bioinformatics
#index1267037
#% 
#!
  
#*The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation.
#@Sandra N. Loevenich,Erich Brunner,Nichole L. King,Eric W. Deutsch,Stephen E. Stein,Ruedi Aebersold,Ernst Hafen
#t2009
#cBMC Bioinformatics
#index1267038
#% 
#!
  
#*Analyzing miRNA co-expression networks to explore TF-miRNA regulation.
#@Sanghamitra Bandyopadhyay,Malay Bhattacharyya
#t2009
#cBMC Bioinformatics
#index1267039
#% 
#!
  
#*Protein domain organisation: adding order.
#@Sarah K. Kummerfeld,Sarah A. Teichmann
#t2009
#cBMC Bioinformatics
#index1267040
#% 
#!
  
#*Improved analysis of bacterial CGH data beyond the log-ratio paradigm.
#@Lars Snipen,Otto L. Nyquist,Margrete Solheim,Ågot Aakra,Ingolf F. Nes
#t2009
#cBMC Bioinformatics
#index1267041
#% 
#!
  
#*Detection of discriminative sequence patterns in the neighborhood of proline cis peptide bonds and their functional annotation.
#@Costas P. Exarchos,Themis P. Exarchos,Costas Papaloukas,Anastassios N. Troganis,Dimitrios I. Fotiadis
#t2009
#cBMC Bioinformatics
#index1267042
#% 
#!
  
#*Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees.
#@Donna M. Toleno,Gabriel Renaud,Tyra G. Wolfsberg,Munirul Islam,Derek E. Wildman,Kimberly D. Siegmund,Joseph G. Hacia
#t2009
#cBMC Bioinformatics
#index1267043
#% 
#!
  
#*A-MADMAN: Annotation-based microarray data meta-analysis tool.
#@Andrea Bisognin,Alessandro Coppe,Francesco Ferrari,Davide Risso,Chiara Romualdi,Silvio Bicciato,Stefania Bortoluzzi
#t2009
#cBMC Bioinformatics
#index1267044
#% 
#!
  
#*OrthoClusterDB: an online platform for synteny blocks.
#@Man-Ping Ng,Ismael A. Vergara,Christian Frech,Qingkang Chen,Xinghuo Zeng,Jian Pei,Nansheng Chen
#t2009
#cBMC Bioinformatics
#index1267045
#% 
#!
  
#*New scoring schema for finding motifs in DNA Sequences.
#@Fatemeh Zare-Mirakabad,Hayedeh Ahrabian,Mehdi Sadeghi,Abbas Nowzari-Dalini,Bahram Goliaei
#t2009
#cBMC Bioinformatics
#index1267046
#% 
#!
  
#*puma: a Bioconductor package for propagating uncertainty in microarray analysis.
#@Richard D. Pearson,Xuejun Liu,Guido Sanguinetti,Marta Milo,Neil D. Lawrence,Magnus Rattray
#t2009
#cBMC Bioinformatics
#index1267047
#% 
#!
  
#*ProtSA: a web application for calculating sequence specific protein solvent accessibilities in the unfolded ensemble.
#@Jorge Estrada,Pau Bernadó,Martin Blackledge,Javier Sancho
#t2009
#cBMC Bioinformatics
#index1267048
#% 
#!
  
#*FISim: A new similarity measure between transcription factor binding sites based on the fuzzy integral.
#@Fernando Garcia,Francisco J. Lopez,Carlos Cano,Armando Blanco
#t2009
#cBMC Bioinformatics
#index1267049
#% 
#!
  
#*PanGEA: Identification of allele specific gene expression using the 454 technology.
#@Robert Kofler,Tatiana Teixeira Torres,Tamas Lelley,Christian Schlötterer
#t2009
#cBMC Bioinformatics
#index1267050
#% 
#!
  
#*On reliable discovery of molecular signatures.
#@Roland Nilsson,Johan Björkegren,Jesper Tegnér
#t2009
#cBMC Bioinformatics
#index1267051
#% 
#!
  
#*Error statistics of hidden Markov model and hidden Boltzmann model results.
#@Lee Aaron Newberg
#t2009
#cBMC Bioinformatics
#index1267052
#% 
#!
  
#*Structure-based substrate screening for an enzyme.
#@Tao Xu,Lujia Zhang,Xuedong Wang,Dongzhi Wei,Tianbi Li
#t2009
#cBMC Bioinformatics
#index1267053
#% 
#!
  
#*Metabolite signal identification in accurate mass metabolomics data with MZedDB, an interactive annotation tool utilising predicted ionisation behaviour 'rules'.
#@John Draper,David P. Enot,David Parker,Manfred Beckmann,Stuart Snowdon,Wanchang Lin,Hassan Zubair
#t2009
#cBMC Bioinformatics
#index1267054
#% 
#!
  
#*Inverse Langmuir method for oligonucleotide microarray analysis.
#@Geert C. W. M. Mulders,Gerard T. Barkema,Enrico Carlon
#t2009
#cBMC Bioinformatics
#index1267055
#% 
#!
  
#*OnEX: Exploring changes in life science ontologies.
#@Michael Hartung,Toralf Kirsten,Anika Gross,Erhard Rahm
#t2009
#cBMC Bioinformatics
#index1267056
#% 
#!
  
#*Genome Projector: zoomable genome map with multiple views.
#@Kazuharu Arakawa,Satoshi Tamaki,Nobuaki Kono,Nobuhiro Kido,Keita Ikegami,Ryu Ogawa,Masaru Tomita
#t2009
#cBMC Bioinformatics
#index1267057
#% 
#!
  
#*MarVis: a tool for clustering and visualization of metabolic biomarkers.
#@Alexander Kaever,Thomas Lingner,Kirstin Feussner,Cornelia Göbel,Ivo Feussner,Peter Meinicke
#t2009
#cBMC Bioinformatics
#index1267058
#% 
#!
  
#*MBA: a literature mining system for extracting biomedical abbreviations.
#@Yun Xu,ZhiHao Wang,YiMing Lei,YuZhong Zhao,Yu Xue
#t2009
#cBMC Bioinformatics
#index1267059
#% 
#!
  
#*SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip.
#@Hironori Fujisawa,Youko Horiuchi,Yoshiaki Harushima,Toyoyuki Takada,Shinto Eguchi,Takako Mochizuki,Takayuki Sakaguchi,Toshihiko Shiroishi,Nori Kurata
#t2009
#cBMC Bioinformatics
#index1267060
#% 
#!
  
#*An innovative approach for testing bioinformatics programs using metamorphic testing.
#@Tsong Yueh Chen,Joshua W. K. Ho,Huai Liu,Xiaoyuan Xie
#t2009
#cBMC Bioinformatics
#index1267061
#% 
#!
  
#*How to find simple and accurate rules for viral protease cleavage specificities.
#@Thorsteinn S. Rögnvaldsson,Terence A. Etchells,Liwen You,Daniel Garwicz,Ian H. Jarman,Paulo J. G. Lisboa
#t2009
#cBMC Bioinformatics
#index1267062
#% 
#!
  
#*Modeling genomic data with type attributes, balancing stability and maintainability.
#@Norbert Busch,Gero Wedemann
#t2009
#cBMC Bioinformatics
#index1267063
#% 
#!
  
#*mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics.
#@Bernhard Thielen,Stephanie Heinen,Dietmar Schomburg
#t2009
#cBMC Bioinformatics
#index1267064
#% 
#!
  
#*Filtering Genes for Cluster and Network Analysis.
#@David Tritchler,Elena Parkhomenko,Joseph Beyene
#t2009
#cBMC Bioinformatics
#index1267065
#% 
#!
  
#*Iterative refinement of structure-based sequence alignments by Seed Extension.
#@Changhoon Kim,Chin-Hsien Tai,Byungkook Lee
#t2009
#cBMC Bioinformatics
#index1267066
#% 
#!
  
#*Protein-protein interaction based on pairwise similarity.
#@Nazar Zaki,Sanja Lazarova-Molnar,Wassim El-Hajj,Piers Campbell
#t2009
#cBMC Bioinformatics
#index1267067
#% 
#!
  
#*Biological sequences as pictures - a generic two dimensional solution for iterated maps.
#@Jonas S. Almeida,Susana Vinga
#t2009
#cBMC Bioinformatics
#index1267068
#% 
#!
  
#*Performance of random forest when SNPs are in linkage disequilibrium.
#@Yan A. Meng,Yi Yu,L. Adrienne Cupples,Lindsay A. Farrer,Kathryn L. Lunetta
#t2009
#cBMC Bioinformatics
#index1267069
#% 
#!
  
#*sscMap: An extensible Java application for connecting small-molecule drugs using gene-expression signatures.
#@Shu-Dong Zhang,Timothy W. Gant
#t2009
#cBMC Bioinformatics
#index1267070
#% 
#!
  
#*Improving classification in protein structure databases using text mining.
#@Antonis Koussounadis,Oliver Redfern,David T. Jones
#t2009
#cBMC Bioinformatics
#index1267071
#% 
#!
  
#*Edge detection in microscopy images using curvelets.
#@Tobias Gebäck,Petros Koumoutsakos
#t2009
#cBMC Bioinformatics
#index1267072
#% 
#!
  
#*Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.
#@Gordon W. Slysz,Charles A. H. Baker,Benjamin M. Bozsa,Anthony Dang,Andrew J. Percy,Melissa Bennett,David C. Schriemer
#t2009
#cBMC Bioinformatics
#index1267073
#% 
#!
  
#*A structured overview of simultaneous component based data integration.
#@Katrijn Van Deun,Age K. Smilde,Mariet J. van der Werf,Henk A. L. Kiers,Iven Van Mechelen
#t2009
#cBMC Bioinformatics
#index1267074
#% 
#!
  
#*A new regularized least squares support vector regression for gene selection.
#@Pei-Chun Chen,Su-Yun Huang,Wei J. Chen,Chuhsing Kate Hsiao
#t2009
#cBMC Bioinformatics
#index1267075
#% 
#!
  
#*Evaluating the impact of scoring parameters on the structure of intra-specific genetic variation using RawGeno, an R package for automating AFLP scoring.
#@Nils Arrigo,Jarek W. Tuszynski,Dorothee Ehrich,Tommy Gerdes,Nadir Alvarez
#t2009
#cBMC Bioinformatics
#index1267076
#% 
#!
  
#*Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data.
#@Navdeep Jaitly,Anoop M. Mayampurath,Kyle Littlefield,Joshua N. Adkins,Gordon A. Anderson,Richard D. Smith
#t2009
#cBMC Bioinformatics
#index1267077
#% 
#!
  
#*Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation.
#@Kimberly Van Auken,Joshua Jaffery,Juancarlos Chan,Hans-Michael Müller,Paul W. Sternberg
#t2009
#cBMC Bioinformatics
#index1267078
#% 
#!
  
#*TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach.
#@Naryttza N. Diaz,Lutz Krause,Alexander Goesmann,Karsten Niehaus,Tim W. Nattkemper
#t2009
#cBMC Bioinformatics
#index1267079
#% 
#!
  
#*Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis.
#@Ming Yi,Uma Mudunuri,Anney Che,Robert M. Stephens
#t2009
#cBMC Bioinformatics
#index1267080
#% 
#!
  
#*A comparison on effects of normalisations in the detection of differentially expressed genes.
#@Monica Chiogna,Maria Sofia Massa,Davide Risso,Chiara Romualdi
#t2009
#cBMC Bioinformatics
#index1267081
#% 
#!
  
#*Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis.
#@Chao Yang,Zengyou He,Weichuan Yu
#t2009
#cBMC Bioinformatics
#index1267082
#% 
#!
  
#*Marker-free image registration of electron tomography tilt-series.
#@Carlos Oscar Sánchez Sorzano,Cédric Messaoudi,Matthias Eibauer,Jose-Roman Bilbao-Castro,Reiner Hegerl,S. Nickell,Sergio Marco,José María Carazo
#t2009
#cBMC Bioinformatics
#index1267083
#% 
#!
  
#*Genotype determination for polymorphisms in linkage disequilibrium.
#@Zhaoxia Yu,Chad Garner,Argyrios Ziogas,Hoda Anton-Culver,Daniel J. Schaid
#t2009
#cBMC Bioinformatics
#index1267084
#% 
#!
  
#*Gene set-based module discovery in the breast cancer transcriptome.
#@Atsushi Niida,Andrew D. Smith,Seiya Imoto,Hiroyuki Aburatani,Michael Q. Zhang,Tetsu Akiyama
#t2009
#cBMC Bioinformatics
#index1267085
#% 
#!
  
#*Estimating parameters for generalized mass action models with connectivity information.
#@Chih-Lung Ko,Eberhard O. Voit,Feng-Sheng Wang
#t2009
#cBMC Bioinformatics
#index1267086
#% 
#!
  
#*Regression based predictor for p53 transactivation.
#@Sivakumar Gowrisankar,Anil G. Jegga
#t2009
#cBMC Bioinformatics
#index1267087
#% 
#!
  
#*Sparse canonical methods for biological data integration: application to a cross-platform study.
#@Kim-Anh Lê Cao,Pascal G. P. Martin,Christèle Robert-Granié,Philippe Besse
#t2009
#cBMC Bioinformatics
#index1267088
#% 
#!
  
#*Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels.
#@Kevin Y. Yip,Philip M. Kim,Drew McDermott,Mark Gerstein
#t2009
#cBMC Bioinformatics
#index1267089
#% 
#!
  
#*A general modular framework for gene set enrichment analysis.
#@Marit Ackermann,Korbinian Strimmer
#t2009
#cBMC Bioinformatics
#index1267090
#% 
#!
  
#*Infrastructure for the life sciences: design and implementation of the UniProt website.
#@Eric Jain,Amos Bairoch,Severine Duvaud,Isabelle Phan,Nicole Redaschi,Baris E. Suzek,Maria Jesus Martin,Peter B. McGarvey,Elisabeth Gasteiger
#t2009
#cBMC Bioinformatics
#index1267091
#% 
#!
  
#*Supervised learning for the automated transcription of spacer classification from spoligotype films.
#@David J. Jeffries,Neil Abernethy,Bouke C. de Jong
#t2009
#cBMC Bioinformatics
#index1267092
#% 
#!
  
#*: a tool for discovery and visualization of enriched GO terms in ranked gene lists.
#@Eran Eden,Roy Navon,Israel Steinfeld,Doron Lipson,Zohar Yakhini
#t2009
#cBMC Bioinformatics
#index1267093
#% 
#!
  
#*The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes.
#@Todd Riley,Xin Yu,Eduardo Sontag,Arnold Levine
#t2009
#cBMC Bioinformatics
#index1267094
#% 
#!
  
#*Ensemble approach to predict specificity determinants: benchmarking and validation.
#@Saikat Chakrabarti,Anna R. Panchenko
#t2009
#cBMC Bioinformatics
#index1267095
#% 
#!
  
#*Combining Pareto-optimal clusters using supervised learning for identifying co-expressed genes.
#@Ujjwal Maulik,Anirban Mukhopadhyay,Sanghamitra Bandyopadhyay
#t2009
#cBMC Bioinformatics
#index1267096
#% 
#!
  
#*Using least median of squares for structural superposition of flexible proteins.
#@Yu-Shen Liu,Yi Fang,Karthik Ramani
#t2009
#cBMC Bioinformatics
#index1267097
#% 
#!
  
#*EFICAz: enzyme function inference by a combined approach enhanced by machine learning.
#@Adrian K. Arakaki,Ying Huang,Jeffrey Skolnick
#t2009
#cBMC Bioinformatics
#index1267098
#% 
#!
  
#*Enzyme classification with peptide programs: a comparative study.
#@Daniel Faria,António E. N. Ferreira,André O. Falcão
#t2009
#cBMC Bioinformatics
#index1267099
#% 
#!
  
#*: automated structural re-annotation pipeline for DNA microarrays.
#@Bart H. J. van den Berg,Jay H. Konieczka,Fiona M. McCarthy,Shane C. Burgess
#t2009
#cBMC Bioinformatics
#index1267100
#% 
#!
  
#*Outcome prediction based on microarray analysis: a critical perspective on methods.
#@Michalis E. Zervakis,Michalis E. Blazadonakis,Georgia Tsiliki,Vasiliki Danilatou,Manolis Tsiknakis,Dimitris Kafetzopoulos
#t2009
#cBMC Bioinformatics
#index1267101
#% 
#!
  
#*dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation.
#@Manoj Hariharan,Vinod Scaria,Samir K. Brahmachari
#t2009
#cBMC Bioinformatics
#index1267102
#% 
#!
  
#*Sample entropy analysis of cervical neoplasia gene-expression signatures.
#@Shaleen K. Botting,Jerome P. Trzeciakowski,Michelle F. Benoit,Salama A. Salama,Concepcion R. Diaz-Arrastia
#t2009
#cBMC Bioinformatics
#index1267103
#% 
#!
  
#*Improved results in proteomics by use of local and peptide-class specific false discovery rates.
#@Lau Sennels,Jimi-Carlo Bukowski-Wills,Juri Rappsilber
#t2009
#cBMC Bioinformatics
#index1267104
#% 
#!
  
#*Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning.
#@Philippe Lemey,Martin Lott,Darren P. Martin,Vincent Moulton
#t2009
#cBMC Bioinformatics
#index1267105
#% 
#!
  
#*BFL: a node and edge betweenness based fast layout algorithm for large scale networks.
#@Tatsunori B. Hashimoto,Masao Nagasaki,Kaname Kojima,Satoru Miyano
#t2009
#cBMC Bioinformatics
#index1267106
#% 
#!
  
#*Automated FingerPrint Background removal: FPB.
#@Simone Scalabrin,Michele Morgante,Alberto Policriti
#t2009
#cBMC Bioinformatics
#index1267107
#% 
#!
  
#*flowClust: a Bioconductor package for automated gating of flow cytometry data.
#@Kenneth Lo,Florian Hahne,Ryan R. Brinkman,Raphael Gottardo
#t2009
#cBMC Bioinformatics
#index1267108
#% 
#!
  
#*Island method for estimating the statistical significance of profile-profile alignment scores.
#@Aleksandar Poleksic
#t2009
#cBMC Bioinformatics
#index1267109
#% 
#!
  
#*TOMOBFLOW: feature-preserving noise filtering for electron tomography.
#@Jose-Jesus Fernandez
#t2009
#cBMC Bioinformatics
#index1267110
#% 
#!
  
#*The PHA Depolymerase Engineering Database: A systematic analysis tool for the diverse family of polyhydroxyalkanoate (PHA) depolymerases.
#@Michael Knoll,Thomas M. Hamm,Florian Wagner,Virginia Martinez,Jürgen Pleiss
#t2009
#cBMC Bioinformatics
#index1267111
#% 
#!
  
#*Transcriptional programs: Modelling higher order structure in transcriptional control.
#@John E. Reid,Sascha Ott,Lorenz Wernisch
#t2009
#cBMC Bioinformatics
#index1267112
#% 
#!
  
#*Clique-based data mining for related genes in a biomedical database.
#@Tsutomu Matsunaga,Chikara Yonemori,Etsuji Tomita,Masaaki Muramatsu
#t2009
#cBMC Bioinformatics
#index1267113
#% 
#!
  
#*Statistical identification of gene association by CID in application of constructing ER regulatory network.
#@Li-Yu D. Liu,Chien-Yu Chen,Mei-Ju M. Chen,Ming-Shian Tsai,Cho-Han S. Lee,Tzu L. Phang,Li-Yun Chang,Wen-Hung Kuo,Hsiao-Lin Hwa,Huang-Chun Lien,Shih-Ming Jung,Yi-Shing Lin,King-Jen Chang,Fon-Jou Hsieh
#t2009
#cBMC Bioinformatics
#index1267114
#% 
#!
  
#*Iterative Bayesian Model Averaging: a method for the application of survival analysis to high-dimensional microarray data.
#@Amalia Annest,Roger Eugene Bumgarner,Adrian E. Raftery,Ka Yee Yeung
#t2009
#cBMC Bioinformatics
#index1267115
#% 
#!
  
#*TableButler - A tool for combining, handling and processing of huge data tables.
#@Christian Schwager,Amir Abdollahi,Ute Wirkner,Peter Huber
#t2009
#cBMC Bioinformatics
#index1267116
#% 
#!
  
#*SNP HiTLink: a high-throughput linkage analysis system employing dense SNP data.
#@Yoko Fukuda,Yasuo Nakahara,Hidetoshi Date,Yuji Takahashi,Jun Goto,Akinori Miyashita,Ryozo Kuwano,Hiroki Adachi,Eiji Nakamura,Shoji Tsuji
#t2009
#cBMC Bioinformatics
#index1267117
#% 
#!
  
#*Identifying set-wise differential co-expression in gene expression microarray data.
#@Sung-Bum Cho,Jihun Kim,Ju Han Kim
#t2009
#cBMC Bioinformatics
#index1267118
#% 
#!
  
#*PCOPGene-Net: Holistic Characterisation of cellular states from microarray data based on continuous and non-continuous analysis of gene-expression relationships.
#@Mario Huerta,Juan Cedano,Dario Peña,Antonio Rodriguez,Enrique Querol
#t2009
#cBMC Bioinformatics
#index1267119
#% 
#!
  
#*Robust discovery of periodically expressed genes using the laplace periodogram.
#@Kuo-ching Liang,Xiaodong Wang,Ta-Hsin Li
#t2009
#cBMC Bioinformatics
#index1267120
#% 
#!
  
#*VASCo: computation and visualization of annotated protein surface contacts.
#@Georg Steinkellner,Robert Rader,Gerhard G. Thallinger,Christoph Kratky,Karl Gruber
#t2009
#cBMC Bioinformatics
#index1267121
#% 
#!
  
#*Improving detection of differentially expressed gene sets by applying cluster enrichment analysis to Gene Ontology.
#@Tao Xu,Jianlei Gu,Yan Zhou,LinFang Du
#t2009
#cBMC Bioinformatics
#index1267122
#% 
#!
  
#*Statistical and visual differentiation of subcellular imaging.
#@Nicholas A. Hamilton,Jack T. H. Wang,Markus C. Kerr,Rohan D. Teasdale
#t2009
#cBMC Bioinformatics
#index1267123
#% 
#!
  
#*Generating rate equations for complex enzyme systems by a computer-assisted systematic method.
#@Feng Qi,Ranjan K. Dash,Yu Han,Daniel A. Beard
#t2009
#cBMC Bioinformatics
#index1267124
#% 
#!
  
#*Selecting control genes for RT-QPCR using public microarray data.
#@Vlad Popovici,Darlene R. Goldstein,Janine Antonov,Rolf Jaggi,Mauro Delorenzi,Pratyaksha Wirapati
#t2009
#cBMC Bioinformatics
#index1267125
#% 
#!
  
#*Comparison of small n statistical tests of differential expression applied to microarrays.
#@Carl Murie,Owen Z. Woody,Anna Y. Lee,Robert Nadon
#t2009
#cBMC Bioinformatics
#index1267126
#% 
#!
  
#*TransCent: Computational enzyme design by transferring active sites and considering constraints relevant for catalysis.
#@André Fischer,Nils Enkler,Gerd Neudert,Marco Bocola,Reinhard Sterner,Rainer Merkl
#t2009
#cBMC Bioinformatics
#index1267127
#% 
#!
  
#*A score system for quality evaluation of RNA sequence tags: an improvement for gene expression profiling.
#@Daniel G. Pinheiro,Pedro A. F. Galante,Sandro J. de Souza,Marco A. Zago,Wilson A. Silva Jr.
#t2009
#cBMC Bioinformatics
#index1267128
#% 
#!
  
#*Transmembrane protein topology prediction using support vector machines.
#@Timothy Nugent,David T. Jones
#t2009
#cBMC Bioinformatics
#index1267129
#% 
#!
  
#*An introduction to scripting in Ruby for biologists.
#@Jan Aerts,Andy Law
#t2009
#cBMC Bioinformatics
#index1267130
#% 
#!
  
#*Construction and use of gene expression covariation matrix.
#@Jérôme Hennetin,Petri Pehkonen,Michel Bellis
#t2009
#cBMC Bioinformatics
#index1267131
#% 
#!
  
#*Disease candidate gene identification and prioritization using protein interaction networks.
#@Jing Chen,Bruce J. Aronow,Anil G. Jegga
#t2009
#cBMC Bioinformatics
#index1267132
#% 
#!
  
#*FlyPhy: a phylogenomic analysis platform for genes and gene families.
#@Jinyu Wu,Xiang Xu,Jian Xiao,Long Xu,Huiguang Yi,Shengjie Gao,Jing Liu,Qiyu Bao,Fangqing Zhao,Xiaokun Li
#t2009
#cBMC Bioinformatics
#index1267133
#% 
#!
  
#*Application of multiple statistical tests to enhance mass spectrometry-based biomarker discovery.
#@Niclas Chiang Tan,Wayne G. Fisher,Kevin P. Rosenblatt,Harold R. Garner
#t2009
#cBMC Bioinformatics
#index1267134
#% 
#!
  
#*FuGEFlow: data model and markup language for flow cytometry.
#@Yu Qian,Olga Tchuvatkina,Josef Spidlen,Peter Wilkinson,Maura Gasparetto,Andrew R. Jones,Frank J. Manion,Richard H. Scheuermann,Rafick-Pierre Sekaly,Ryan R. Brinkman
#t2009
#cBMC Bioinformatics
#index1267135
#% 
#!
  
#*On validation and invalidation of biological models.
#@James Anderson,Antonis Papachristodoulou
#t2009
#cBMC Bioinformatics
#index1267136
#% 
#!
  
#*mbs: modifying Hudson's ms software to generate samples of DNA sequences with a biallelic site under selection.
#@Kosuke M. Teshima,Hideki Innan
#t2009
#cBMC Bioinformatics
#index1267137
#% 
#!
  
#*A Bayesian approach to efficient differential allocation for resampling-based significance testing.
#@Shane T. Jensen,Sameer Soi,Li-San Wang
#t2009
#cBMC Bioinformatics
#index1267138
#% 
#!
  
#*Integrated analysis of DNA copy number and gene expression microarray data using gene sets.
#@Renée X. de Menezes,Marten Boetzer,Melle Sieswerda,Gert-Jan B. van Ommen,Judith M. Boer
#t2009
#cBMC Bioinformatics
#index1267139
#% 
#!
  
#*Accurate and fast methods to estimate the population mutation rate from error prone sequences.
#@Bjarne Knudsen,Michael M. Miyamoto
#t2009
#cBMC Bioinformatics
#index1267140
#% 
#!
  
#*Bayesian DNA copy number analysis.
#@Paola M. V. Rancoita,Marcus Hutter,Francesco Bertoni,Ivo Kwee
#t2009
#cBMC Bioinformatics
#index1267141
#% 
#!
  
#*Kerfdr: a semi-parametric kernel-based approach to local false discovery rate estimation.
#@Mickaël Guedj,Stéphane Robin,Alain Celisse,Grégory Nuel
#t2009
#cBMC Bioinformatics
#index1267142
#% 
#!
  
#*Comparison of sequence-dependent tiling array normalization approaches.
#@Ho-Ryun Chung,Martin Vingron
#t2009
#cBMC Bioinformatics
#index1267143
#% 
#!
  
#*MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study.
#@Xiang Wan,Can Yang,Qiang Yang,Hong Xue,Nelson L. S. Tang,Weichuan Yu
#t2009
#cBMC Bioinformatics
#index1267144
#% 
#!
  
#*CNV-seq, a new method to detect copy number variation using high-throughput sequencing.
#@Chao Xie,Martti T. Tammi
#t2009
#cBMC Bioinformatics
#index1267145
#% 
#!
  
#*Unsupervised assessment of microarray data quality using a Gaussian mixture model.
#@Brian E. Howard,Beate Sick,Steffen Heber
#t2009
#cBMC Bioinformatics
#index1267146
#% 
#!
  
#*Quantitative measures for the management and comparison of annotated genomes.
#@Karen Eilbeck,Barry Moore,Carson Holt,Mark Yandell
#t2009
#cBMC Bioinformatics
#index1267147
#% 
#!
  
#*Granger causality vs. dynamic Bayesian network inference: a comparative study.
#@Cunlu Zou,Jianfeng Feng
#t2009
#cBMC Bioinformatics
#index1267148
#% 
#!
  
#*Modeling the role of p53 pulses in DNA damage- induced cell death decision.
#@Tingzhe Sun,Chun Chen,Yuanyuan Wu,Shuai Zhang,Jun Cui,Pingping Shen
#t2009
#cBMC Bioinformatics
#index1267149
#% 
#!
  
#*PCI-SS: MISO dynamic nonlinear protein secondary structure prediction.
#@James R. Green,Michael J. Korenberg,Mohammed O. Aboul-Magd
#t2009
#cBMC Bioinformatics
#index1267150
#% 
#!
  
#*IRSS: a web-based tool for automatic layout and analysis of IRES secondary structure prediction and searching system .
#@Tzong-Yuan Wu,Chi-Chun Hsieh,Jun-Jie Hong,Chung-Yung Chen,Yuh-Show Tsai
#t2009
#cBMC Bioinformatics
#index1267151
#% 
#!
  
#*The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations.
#@Xue Lin,Bahman Afsari,Luigi Marchionni,Leslie Cope,Giovanni Parmigiani,Daniel Q. Naiman,Donald Geman
#t2009
#cBMC Bioinformatics
#index1267152
#% 
#!
  
#*Sample size calculation for microarray experiments with blocked one-way design.
#@Sin-Ho Jung,Insuk Sohn,Stephen L. George,Liping Feng,Phyllis C. Leppert
#t2009
#cBMC Bioinformatics
#index1267153
#% 
#!
  
#*A statistical framework to evaluate virtual screening.
#@Wei Zhao,Kirk E. Hevener,Stephen W. White,Richard E. Lee,James M. Boyett
#t2009
#cBMC Bioinformatics
#index1267154
#% 
#!
  
#*Characterisation and correction of signal fluctuations in successive acquisitions of microarray images.
#@Annie Glatigny,Hervé Delacroix,Thomas Tang,Nicolas François,Lawrence Aggerbeck,Marie-Hélène Mucchielli-Giorgi
#t2009
#cBMC Bioinformatics
#index1267155
#% 
#!
  
#*QSRA - a quality-value guided short read assembler.
#@Douglas W. Bryant Jr.,Weng-Keen Wong,Todd C. Mockler
#t2009
#cBMC Bioinformatics
#index1267156
#% 
#!
  
#*A fast and efficient gene-network reconstruction method from multiple over-expression experiments.
#@Dejan Stokic,Rudolf Hanel,Stefan Thurner
#t2009
#cBMC Bioinformatics
#index1267157
#% 
#!
  
#*Most parsimonious haplotype allele sharing determination.
#@Zhipeng Cai,Hadi Sabaa,Yining Wang,Randy Goebel,Zhiquan Wang,Jiaofen Xu,Paul Stothard,Guohui Lin
#t2009
#cBMC Bioinformatics
#index1267158
#% 
#!
  
#*RNAslider: a faster engine for consecutive windows folding and its application to the analysis of genomic folding asymmetry.
#@Yair Horesh,Ydo Wexler,Ilana Lebenthal,Michal Ziv-Ukelson,Ron Unger
#t2009
#cBMC Bioinformatics
#index1267159
#% 
#!
  
#*A realistic assessment of methods for extracting gene/protein interactions from free text.
#@Renata Kabiljo,Andrew B. Clegg,Adrian J. Shepherd
#t2009
#cBMC Bioinformatics
#index1267160
#% 
#!
  
#*NIFTI: An evolutionary approach for finding number of clusters in microarray data.
#@Sudhakar Jonnalagadda,Rajagopalan Srinivasan
#t2009
#cBMC Bioinformatics
#index1267161
#% 
#!
  
#*Data-driven normalization strategies for high-throughput quantitative RT-PCR.
#@Jessica C. Mar,Yasumasa Kimura,Kate Schroder,Katharine M. Irvine,Yoshihide Hayashizaki,Harukazu Suzuki,David A. Hume,John Quackenbush
#t2009
#cBMC Bioinformatics
#index1267162
#% 
#!
  
#*ResBoost: characterizing and predicting catalytic residues in enzymes.
#@Ron Alterovitz,Aaron Arvey,Sriram Sankararaman,Carolina Dallett,Yoav Freund,Kimmen Sjölander
#t2009
#cBMC Bioinformatics
#index1267163
#% 
#!
  
#*Automated genome mining for natural products.
#@Michael H. T. Li,Peter M. U. Ung,James Zajkowski,Sylvie Garneau-Tsodikova,David H. Sherman
#t2009
#cBMC Bioinformatics
#index1267164
#% 
#!
  
#*designGG: an R-package and web tool for the optimal design of genetical genomics experiments.
#@Yang Li,Morris A. Swertz,Gonzalo Vera,Jingyuan Fu,Rainer Breitling,Ritsert C. Jansen
#t2009
#cBMC Bioinformatics
#index1267165
#% 
#!
  
#*Accounting for uncertainty when assessing association between copy number and disease: a latent class model.
#@Juan R. González,Isaac Subirana,Geòrgia Escaramís,Solymar Peraza,Alejandro Cáceres,Xavier Estivill,Lluís Armengol
#t2009
#cBMC Bioinformatics
#index1267166
#% 
#!
  
#*Platform dependence of inference on gene-wise and gene-set involvement in human lung development.
#@Rose Du,Kelan Tantisira,Vincent J. Carey,Soumyaroop Bhattacharya,Stephanie Metje,Alvin T. Kho,Barbara J. Klanderman,Roger Gaedigk,Ross Lazarus,Thomas J. Mariani,J. Steven Leeder,Scott T. Weiss
#t2009
#cBMC Bioinformatics
#index1267167
#% 
#!
  
#*Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs.
#@Bartek Wilczynski,Norbert Dojer,Mateusz Patelak,Jerzy Tiuryn
#t2009
#cBMC Bioinformatics
#index1267168
#% 
#!
  
#*The High Throughput Sequence Annotation Service (HT-SAS) - the shortcut from sequence to true Medline words.
#@Szymon Kaczanowski,Pawel Siedlecki,Piotr Zielenkiewicz
#t2009
#cBMC Bioinformatics
#index1267169
#% 
#!
  
#*A reexamination of information theory-based methods for DNA-binding site identification.
#@Ivan Erill,Michael C. O'Neill
#t2009
#cBMC Bioinformatics
#index1267170
#% 
#!
  
#*SDRF2GRAPH - a visualization tool of a spreadsheet-based description of experimental processes.
#@Hideya Kawaji,Yoshihide Hayashizaki,Carsten O. Daub
#t2009
#cBMC Bioinformatics
#index1267171
#% 
#!
  
#*Detecting intergene correlation changes in microarray analysis: a new approach to gene selection.
#@Rui Hu,Xing Qiu,Galina V. Glazko,Lev Klebanov,Andrei Yakovlev
#t2009
#cBMC Bioinformatics
#index1267172
#% 
#!
  
#*Survey-based naming conventions for use in OBO Foundry ontology development.
#@Daniel Schober,Barry Smith,Suzanna E. Lewis,Waclaw Kusnierczyk,Jane Lomax,Chris Mungall,Chris F. Taylor,Philippe Rocca-Serra,Susanna-Assunta Sansone
#t2009
#cBMC Bioinformatics
#index1267173
#% 
#!
  
#*CpG islands or CpG clusters: how to identify functional GC-rich regions in a genome?
#@Leng Han,Zhongming Zhao
#t2009
#cBMC Bioinformatics
#index1267174
#% 
#!
  
#*Information management for high content live cell imaging.
#@Daniel Jameson,David A. Turner,John Ankers,Stephnie Kennedy,Sheila Ryan,Neil Swainston,Tony Griffiths,David G. Spiller,Stephen G. Oliver,Michael R. H. White,Douglas B. Kell,Norman W. Paton
#t2009
#cBMC Bioinformatics
#index1267175
#% 
#!
  
#*Bayesian clustering and feature selection for cancer tissue samples.
#@Pekka Marttinen,Samuel Myllykangas,Jukka Corander
#t2009
#cBMC Bioinformatics
#index1267176
#% 
#!
  
#*Identification of differentially expressed subnetworks based on multivariate ANOVA.
#@Taeyoung Hwang,Taesung Park
#t2009
#cBMC Bioinformatics
#index1267177
#% 
#!
  
#*Prediction of nuclear proteins using SVM and HMM models.
#@Manish Kumar,Gajendra P. S. Raghava
#t2009
#cBMC Bioinformatics
#index1267178
#% 
#!
  
#*Tableau-based protein substructure search using quadratic programming.
#@Alex Stivala,Anthony Wirth,Peter J. Stuckey
#t2009
#cBMC Bioinformatics
#index1267179
#% 
#!
  
#*An XML transfer schema for exchange of genomic and genetic mapping data: implementation as a web service in a Taverna workflow.
#@Trevor Paterson,Andy Law
#t2009
#cBMC Bioinformatics
#index1267180
#% 
#!
  
#*Optimized ancestral state reconstruction using Sankoff parsimony.
#@José Carlos Clemente,Kazuho Ikeo,Gabriel Valiente,Takashi Gojobori
#t2009
#cBMC Bioinformatics
#index1267181
#% 
#!
  
#*MIMAS 3.0 is a Multiomics Information Management and Annotation System.
#@Alexandre Gattiker,Leandro Hermida,Robin Liechti,Ioannis Xenarios,Olivier Collin,Jacques Rougemont,Michael Primig
#t2009
#cBMC Bioinformatics
#index1267182
#% 
#!
  
#*Seq4SNPs: new software for retrieval of multiple, accurately annotated DNA sequences, ready formatted for SNP assay design.
#@Helen I. Field,Serena A. Scollen,Craig Luccarini,Caroline Baynes,Jonathan Morrison,Alison M. Dunning,Douglas F. Easton,Paul D. P. Pharoah
#t2009
#cBMC Bioinformatics
#index1267183
#% 
#!
  
#*POINeT: protein interactome with sub-network analysis and hub prioritization.
#@Sheng-An Lee,Chen-hsiung Chan,Tzu-Chi Chen,Chia-Ying Yang,Kuo-Chuan Huang,Chi-Hung Tsai,Jin-Mei Lai,Feng-Sheng Wang,Cheng-Yan Kao,Chi-Ying F. Huang
#t2009
#cBMC Bioinformatics
#index1267184
#% 
#!
  
#*Linked region detection using high-density SNP genotype data via the minimum recombinant model of pedigree haplotype inference.
#@Lusheng Wang,Zhanyong Wang,Wanling Yang
#t2009
#cBMC Bioinformatics
#index1267185
#% 
#!
  
#*Validating subcellular localization prediction tools with mycobacterial proteins.
#@Daniel Restrepo-Montoya,Carolina Vizcaíno,Luis F. Niño,Marisol Ocampo,Manuel E. Patarroyo,Manuel A. Patarroyo
#t2009
#cBMC Bioinformatics
#index1267186
#% 
#!
  
#*GLOSSI: a method to assess the association of genetic loci-sets with complex diseases.
#@High-Seng Chai,Hugues Sicotte,Kent R. Bailey,Stephen T. Turner,Yan W. Asmann,Jean-Pierre Kocher
#t2009
#cBMC Bioinformatics
#index1267187
#% 
#!
  
#*Differential splicing using whole-transcript microarrays.
#@Mark D. Robinson,Terence P. Speed
#t2009
#cBMC Bioinformatics
#index1267188
#% 
#!
  
#*: software for the processing and analysis of T-RFLP data.
#@Steven W. Culman,Robert Bukowski,Hugh G. Gauch,Hinsby Cadillo-Quiroz,Daniel H. Buckley
#t2009
#cBMC Bioinformatics
#index1267189
#% 
#!
  
#*OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.
#@Fabian Schreiber,Kerstin Pick,Dirk Erpenbeck,Gert Wörheide,Burkhard Morgenstern
#t2009
#cBMC Bioinformatics
#index1267190
#% 
#!
  
#*Profile analysis and prediction of tissue-specific CpG island methylation classes.
#@Christopher Previti,Oscar Harari,Igor Zwir,Coral del Val
#t2009
#cBMC Bioinformatics
#index1267191
#% 
#!
  
#*Local alignment of two-base encoded DNA sequence.
#@Nils Homer,Barry Merriman,Stanley F. Nelson
#t2009
#cBMC Bioinformatics
#index1267192
#% 
#!
  
#*Multichromosomal median and halving problems under different genomic distances.
#@Eric Tannier,Chunfang Zheng,David Sankoff
#t2009
#cBMC Bioinformatics
#index1267193
#% 
#!
  
#*EvoRSR: an integrated system for exploring evolution of RNA structural robustness.
#@Wenjie Shu,Ming Ni,Xiaochen Bo,Zhiqiang Zheng,Shengqi Wang
#t2009
#cBMC Bioinformatics
#index1267194
#% 
#!
  
#*An effective docking strategy for virtual screening based on multi-objective optimization algorithm.
#@Honglin Li,Hailei Zhang,Mingyue Zheng,Jie Luo,Ling Kang,Xiaofeng Liu,Xicheng Wang,Hualiang Jiang
#t2009
#cBMC Bioinformatics
#index1267195
#% 
#!
  
#*On finding minimal absent words.
#@Armando J. Pinho,Paulo Jorge S. G. Ferreira,Sara P. Garcia,João M. O. S. Rodrigues
#t2009
#cBMC Bioinformatics
#index1267196
#% 
#!
  
#*TCP: a tool for designing chimera proteins based on the tertiary structure information.
#@Takashi Yoneya,Reina Nishida
#t2009
#cBMC Bioinformatics
#index1267197
#% 
#!
  
#*Triangle network motifs predict complexes by complementing high-error interactomes with structural information.
#@Bill Andreopoulos,Christof Winter,Dirk Labudde,Michael Schroeder
#t2009
#cBMC Bioinformatics
#index1267198
#% 
#!
  
#*A comparison of random forest and its Gini importance with standard chemometric methods for the feature selection and classification of spectral data.
#@Bjoern H. Menze,B. Michael Kelm,Ralf Masuch,Uwe Himmelreich,Peter Bachert,Wolfgang Petrich,Fred A. Hamprecht
#t2009
#cBMC Bioinformatics
#index1267199
#% 
#!
  
#*The textual characteristics of traditional and Open Access scientific journals are similar.
#@Karin Verspoor,K. Bretonnel Cohen,Lawrence Hunter
#t2009
#cBMC Bioinformatics
#index1267200
#% 
#!
  
#*Algorithm of OMA for large-scale orthology inference.
#@Alexander C. J. Roth,Gaston H. Gonnet,Christophe Dessimoz
#t2009
#cBMC Bioinformatics
#index1267201
#% 
#!
  
#*Ligand scaffold hopping combining 3D maximal substructure search and molecular similarity.
#@Flavien Quintus,Olivier Sperandio,Julien Grynberg,Michel Petitjean,Pierre Tufféry
#t2009
#cBMC Bioinformatics
#index1267202
#% 
#!
  
#*Automated Alphabet Reduction for Protein Datasets.
#@Jaume Bacardit,Michael Stout,Jonathan D. Hirst,Alfonso Valencia,Robert Elliott Smith,Natalio Krasnogor
#t2009
#cBMC Bioinformatics
#index1267203
#% 
#!
  
#*Analyses of domains and domain fusions in human proto-oncogenes.
#@Qi Liu,Jinling Huang,Huiqing Liu,Ping Wan,Xiuzi Ye,Ying Xu
#t2009
#cBMC Bioinformatics
#index1267204
#% 
#!
  
#*JNets: Exploring networks by integrating annotation.
#@Jamie I. MacPherson,John W. Pinney,David L. Robertson
#t2009
#cBMC Bioinformatics
#index1267205
#% 
#!
  
#*DOTcvpSB, a software toolbox for dynamic optimization in systems biology.
#@Tomás Hirmajer,Eva Balsa-Canto,Julio R. Banga
#t2009
#cBMC Bioinformatics
#index1267206
#% 
#!
  
#*: colour visualisation of SNPs and CNVs.
#@Sergio Barlati,Sergio Chiesa,Chiara Magri
#t2009
#cBMC Bioinformatics
#index1267207
#% 
#!
  
#*Willows: a memory efficient tree and forest construction package.
#@Heping Zhang,Minghui Wang,Xiang Chen
#t2009
#cBMC Bioinformatics
#index1267208
#% 
#!
  
#*CURE-Chloroplast: A chloroplast C-to-U RNA editing predictor for seed plants.
#@Pufeng Du,Liyan Jia,Yanda Li
#t2009
#cBMC Bioinformatics
#index1267209
#% 
#!
  
#*Markov clustering versus affinity propagation for the partitioning of protein interaction graphs.
#@James Vlasblom,Shoshana J. Wodak
#t2009
#cBMC Bioinformatics
#index1267210
#% 
#!
  
#*In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles.
#@Frank P. Y. Lin,Enrico W. Coiera,Ruiting Lan,Vitali Sintchenko
#t2009
#cBMC Bioinformatics
#index1267211
#% 
#!
  
#*Filtering for increased power for microarray data analysis.
#@Amber J. Hackstadt,Ann M. Hess
#t2009
#cBMC Bioinformatics
#index1267212
#% 
#!
  
#*PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data.
#@Victoria Martin-Requena,Antonio Muñoz-Merida,M. Gonzalo Claros,Oswaldo Trelles
#t2009
#cBMC Bioinformatics
#index1267213
#% 
#!
  
#*Large-scale prediction of long disordered regions in proteins using random forests.
#@Pengfei Han,Xiuzhen Zhang,Raymond S. Norton,Zhi-Ping Feng
#t2009
#cBMC Bioinformatics
#index1267214
#% 
#!
  
#*A joint finite mixture model for clustering genes from independent Gaussian and beta distributed data.
#@Xiaofeng Dai,Timo Erkkilä,Olli Yli-Harja,Harri Lähdesmäki
#t2009
#cBMC Bioinformatics
#index1267215
#% 
#!
  
#*A core-attachment based method to detect protein complexes in PPI networks.
#@Min Wu,Xiaoli Li,Chee-Keong Kwoh,See-Kiong Ng
#t2009
#cBMC Bioinformatics
#index1267216
#% 
#!
  
#*Predicting genetic interactions with random walks on biological networks.
#@Kyle C. Chipman,Ambuj K. Singh
#t2009
#cBMC Bioinformatics
#index1267217
#% 
#!
  
#*eCOMPAGT - efficient Combination and Management of Phenotypes and Genotypes for Genetic Epidemiology.
#@Sebastian Schönherr,Hansi Weißensteiner,Stefan Coassin,Günther Specht,Florian Kronenberg,Anita Brandstätter
#t2009
#cBMC Bioinformatics
#index1267218
#% 
#!
  
#*geneCBR: a translational tool for multiple-microarray analysis and integrative information retrieval for aiding diagnosis in cancer research.
#@Daniel Glez-Peña,Fernando Díaz,Jesús M. Hernández,Juan M. Corchado,Florentino Fdez-Riverola
#t2009
#cBMC Bioinformatics
#index1267219
#% 
#!
  
#*RGG: A general GUI Framework for R scripts.
#@Ilhami Visne,Erkan Dilaveroglu,Klemens Vierlinger,Martin Lauss,Ahmet Yildiz,Andreas Weinhaeusel,Christa Noehammer,Friedrich Leisch,Albert Kriegner
#t2009
#cBMC Bioinformatics
#index1267220
#% 
#!
  
#*A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests.
#@Antonio Carvajal-Rodríguez,Jacobo de Uña-Álvarez,Emilio Rolán-Alvarez
#t2009
#cBMC Bioinformatics
#index1267221
#% 
#!
  
#*A compartmentalized approach to the assembly of physical maps.
#@Serdar Bozdag,Timothy J. Close,Stefano Lonardi
#t2009
#cBMC Bioinformatics
#index1267222
#% 
#!
  
#*Ultra-Structure database design methodology for managing systems biology data and analyses.
#@Christopher W. Maier,Jeffrey G. Long,Bradley M. Hemminger,Morgan C. Giddings
#t2009
#cBMC Bioinformatics
#index1267223
#% 
#!
  
#*Genotyping and inflated type I error rate in genome-wide association case/control studies.
#@Joshua N. Sampson,Hongyu Zhao
#t2009
#cBMC Bioinformatics
#index1267224
#% 
#!
  
#*Resolving deconvolution ambiguity in gene alternative splicing.
#@Yiyuan She,Earl Hubbell,Hui Wang
#t2009
#cBMC Bioinformatics
#index1267225
#% 
#!
  
#*Thermodynamic scaling behavior in genechips.
#@Alessandro Ferrantini,Joke Allemeersch,Paul van Hummelen,Enrico Carlon
#t2009
#cBMC Bioinformatics
#index1267226
#% 
#!
  
#*The Genome Reverse Compiler: an explorative annotation tool.
#@Andrew S. Warren,João Carlos Setubal
#t2009
#cBMC Bioinformatics
#index1267227
#% 
#!
  
#*BRNI: Modular analysis of transcriptional regulatory programs.
#@Iftach Nachman,Aviv Regev
#t2009
#cBMC Bioinformatics
#index1267228
#% 
#!
  
#*GAGE: generally applicable gene set enrichment for pathway analysis.
#@Weijun Luo,Michael S. Friedman,Kerby Shedden,Kurt D. Hankenson,Peter J. Woolf
#t2009
#cBMC Bioinformatics
#index1267229
#% 
#!
  
#*RankAggreg, an R package for weighted rank aggregation.
#@Vasyl Pihur,Susmita Datta,Somnath Datta
#t2009
#cBMC Bioinformatics
#index1267230
#% 
#!
  
#*Improved ChIP-chip analysis by a mixture model approach.
#@Wei Sun,Michael J. Buck,Mukund Patel,Ian J. Davis
#t2009
#cBMC Bioinformatics
#index1267231
#% 
#!
  
#*CLEAN: CLustering Enrichment ANalysis.
#@Johannes M. Freudenberg,Vinnet K. Joshi,Zhen Hu,Mario Medvedovic
#t2009
#cBMC Bioinformatics
#index1267232
#% 
#!
  
#*Modeling post-transcriptional regulation activity of small non-coding RNAs in .
#@Rui-Sheng Wang,Guangxu Jin,Xiang-Sun Zhang,Luonan Chen
#t2009
#cBMC Bioinformatics
#index1267233
#% 
#!
  
#*The GENIUS Grid Portal and robot certificates: a new tool for e-Science.
#@Roberto Barbera,Giacinto Donvito,Alberto Falzone,Giuseppe La Rocca,Luciano Milanesi,Giorgio Pietro Maggi,Saverio Vicario
#t2009
#cBMC Bioinformatics
#index1267234
#% 
#!
  
#*Semi-supervised protein subcellular localization.
#@Qian Xu,Derek Hao Hu,Hong Xue,Weichuan Yu,Qiang Yang
#t2009
#cBMC Bioinformatics
#index1267235
#% 
#!
  
#*The Seventh Asia Pacific Bioinformatics Conference (APBC2009).
#@Michael Q. Zhang,Michael S. Waterman,Xuegong Zhang
#t2009
#cBMC Bioinformatics
#index1267236
#% 
#!
  
#*Simultaneous phylogeny reconstruction and multiple sequence alignment.
#@Feng Yue,Jian Shi,Jijun Tang
#t2009
#cBMC Bioinformatics
#index1267237
#% 
#!
  
#*A chemogenomics view on protein-ligand spaces.
#@Helena Strömbergsson,Gerard J. Kleywegt
#t2009
#cBMC Bioinformatics
#index1267238
#% 
#!
  
#*Deciphering the connectivity structure of biological networks using MixNet.
#@Franck Picard,Vincent Miele,Jean-Jacques Daudin,Ludovic Cottret,Stéphane Robin
#t2009
#cBMC Bioinformatics
#index1267239
#% 
#!
  
#*Utilizing a mixed model approach to compare the lactating rat transcriptome against age-matched control virgins.
#@Antony T. Athippozhy,Liping Huang,Tianyong Zhao,Clavia Ruth Wooton-Kee,Paiboon Jungsuwadee,Arnold J. Stromberg,Mary Vore
#t2009
#cBMC Bioinformatics
#index1267240
#% 
#!
  
#*Viability of in-house datamarting approaches for population genetics analysis of SNP genotypes.
#@Jorge Amigo,Christopher Phillips,Antonio Salas,Ángel Carracedo
#t2009
#cBMC Bioinformatics
#index1267241
#% 
#!
  
#*RegExpBlasting (REB), a Regular Expression Blasting algorithm based on multiply aligned sequences.
#@Francesco Rubino,Marcella Attimonelli
#t2009
#cBMC Bioinformatics
#index1267242
#% 
#!
  
#*PhenoGO: an integrated resource for the multiscale mining of clinical and biological data.
#@Lee T. Sam,Eneida A. Mendonça,Jianrong Li,Judith A. Blake,Carol Friedman,Yves A. Lussier
#t2009
#cBMC Bioinformatics
#index1267243
#% 
#!
  
#*GIBA: a clustering tool for detecting protein complexes.
#@Charalampos N. Moschopoulos,Georgios A. Pavlopoulos,Reinhard Schneider,Spiridon D. Likothanassis,Sophia Kossida
#t2009
#cBMC Bioinformatics
#index1267244
#% 
#!
  
#*Biclustering of gene expression data using reactive greedy randomized adaptive search procedure.
#@Smitha Dharan,Achuthsankar S. Nair
#t2009
#cBMC Bioinformatics
#index1267245
#% 
#!
  
#*Integrative disease classification based on cross-platform microarray data.
#@Chun-Chi Liu,Jianjun Hu,Mrinal Kalakrishnan,Haiyan Huang,Xianghong Jasmine Zhou
#t2009
#cBMC Bioinformatics
#index1267246
#% 
#!
  
#*Analysis of mass spectrometry data using sub-spectra.
#@Wouter Meuleman,Judith Y. M. N. Engwegen,Marie-Christine W. Gast,Lodewyk F. A. Wessels,Marcel J. T. Reinders
#t2009
#cBMC Bioinformatics
#index1267247
#% 
#!
  
#*Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures.
#@Weitao Sun,Jing He
#t2009
#cBMC Bioinformatics
#index1267248
#% 
#!
  
#*Comparison of automated candidate gene prediction systems using genes implicated in type 2 diabetes by genome-wide association studies.
#@Erdahl T. Teber,Jason Y. Liu,Sara Ballouz,Diane Fatkin,Merridee A. Wouters
#t2009
#cBMC Bioinformatics
#index1267249
#% 
#!
  
#*EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.
#@Ernesto Picardi,Flavio Mignone,Graziano Pesole
#t2009
#cBMC Bioinformatics
#index1267250
#% 
#!
  
#*The genome sequencing, annotation and analysis.
#@Sandra P. Calderon-Copete,George Wigger,Christof Wunderlin,Tobias Schmidheini,Joachim Frey,Michael A. Quail,Laurent Falquet
#t2009
#cBMC Bioinformatics
#index1267251
#% 
#!
  
#*Predicting microRNA targets in time-series microarray experiments via functional data analysis.
#@Brian J. Parker,Jiayu Wen
#t2009
#cBMC Bioinformatics
#index1267252
#% 
#!
  
#*Open Biomedical Ontology-based Medline exploration.
#@Weijian Xuan,Manhong Dai,Barbara Mirel,Jean Song,Brian D. Athey,Stanley J. Watson,Fan Meng
#t2009
#cBMC Bioinformatics
#index1267253
#% 
#!
  
#*Analysis on relationship between extreme pathways and correlated reaction sets.
#@Yanping Xi,Yi-Ping Phoebe Chen,Ming Cao,Weirong Wang,Fei Wang
#t2009
#cBMC Bioinformatics
#index1267254
#% 
#!
  
#*Extensive parent-of-origin genetic effects on fetal growth.
#@Ronald M. Adkins,Julia Krushkal,Grant Somes,John Fain,John Morrison,Chad Klauser,Everett F. Magann
#t2009
#cBMC Bioinformatics
#index1267255
#% 
#!
  
#*Semi-supervised gene shaving method for predicting low variation biological pathways from genome-wide data.
#@Dongxiao Zhu
#t2009
#cBMC Bioinformatics
#index1267256
#% 
#!
  
#*The 20 anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community.
#@Domenica D'Elia,Andreas Gisel,Nils-Einar Eriksson,Sophia Kossida,Kimmo Mattila,Lubos Klucar,Erik Bongcam-Rudloff
#t2009
#cBMC Bioinformatics
#index1267257
#% 
#!
  
#*A random forest approach to the detection of epistatic interactions in case-control studies.
#@Rui Jiang,Wanwan Tang,Xuebing Wu,Wenhui Fu
#t2009
#cBMC Bioinformatics
#index1267258
#% 
#!
  
#*A systematic study on latent semantic analysis model parameters for mining biomedical literature.
#@Mohammed Yeasin,Haritha Malempati,Ramin Homayouni,Mohammad S. Sorower
#t2009
#cBMC Bioinformatics
#index1267259
#% 
#!
  
#*A structural interpretation of the effect of GC-content on efficiency of RNA interference.
#@Chi Yu Chan,C. Steven Carmack,Dang D. Long,Anil Maliyekkel,Yu Shao,Igor B. Roninson,Ye Ding
#t2009
#cBMC Bioinformatics
#index1267260
#% 
#!
  
#*Fuzzy rule based unsupervised approach for gene saliency.
#@Nishchal K. Verma,Pooja Agrawal,Yan Cui
#t2009
#cBMC Bioinformatics
#index1267261
#% 
#!
  
#*Knowledge driven decomposition of tumor expression profiles.
#@Martin H. van Vliet,Lodewyk F. A. Wessels,Marcel J. T. Reinders
#t2009
#cBMC Bioinformatics
#index1267262
#% 
#!
  
#*An unsupervised partition method based on association delineated revised mutual information.
#@Jing Chen,Guangcheng Xi
#t2009
#cBMC Bioinformatics
#index1267263
#% 
#!
  
#*On optimal comparability editing with applications to molecular diagnostics.
#@Sebastian Böcker,Sebastian Briesemeister,Gunnar W. Klau
#t2009
#cBMC Bioinformatics
#index1267264
#% 
#!
  
#*'Brukin2D': a 2D visualization and comparison tool for LC-MS data.
#@Dimosthenis Tsagkrasoulis,Panagiotis Zerefos,George Loudos,Antonia Vlahou,Marc Baumann,Sophia Kossida
#t2009
#cBMC Bioinformatics
#index1267265
#% 
#!
  
#*Evaluation of a gene information summarization system by users during the analysis process of microarray datasets.
#@Jianji Yang,Aaron M. Cohen,William R. Hersh
#t2009
#cBMC Bioinformatics
#index1267266
#% 
#!
  
#*Advanced analysis and visualization of gene copy number and expression data.
#@Reija Autio,Matti Saarela,Anna-Kaarina Järvinen,Sampsa Hautaniemi,Jaakko Astola
#t2009
#cBMC Bioinformatics
#index1267267
#% 
#!
  
#*Predicting disordered regions in proteins using the profiles of amino acid indices.
#@Pengfei Han,Xiuzhen Zhang,Zhi-Ping Feng
#t2009
#cBMC Bioinformatics
#index1267268
#% 
#!
  
#*Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining.
#@Antonio Turi,Corrado Loglisci,Eliana Salvemini,Giorgio Grillo,Donato Malerba,Domenica D'Elia
#t2009
#cBMC Bioinformatics
#index1267269
#% 
#!
  
#*Crystallizing short-read assemblies around seeds.
#@Mohammad Sajjad Hossain,Navid Azimi,Steven Skiena
#t2009
#cBMC Bioinformatics
#index1267270
#% 
#!
  
#*Assessing reliability of protein-protein interactions by integrative analysis of data in model organisms.
#@Xiaotong Lin,Mei Liu,Xue-wen Chen
#t2009
#cBMC Bioinformatics
#index1267271
#% 
#!
  
#*Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria.
#@Monica Santamaria,Saverio Vicario,Graziano Pappadà,Gaetano Scioscia,Claudio Scazzocchio,Cecilia Saccone
#t2009
#cBMC Bioinformatics
#index1267272
#% 
#!
  
#*Phenotype forecasting with SNPs data through gene-based Bayesian networks.
#@Alberto Malovini,Angelo Nuzzo,Fulvia Ferrazzi,Annibale A. Puca,Riccardo Bellazzi
#t2009
#cBMC Bioinformatics
#index1267273
#% 
#!
  
#*GAIA: a gram-based interaction analysis tool - an approach for identifying interacting domains in yeast.
#@Kelvin Xi Zhang,B. F. Francis Ouellette
#t2009
#cBMC Bioinformatics
#index1267274
#% 
#!
  
#*Identification of temporal association rules from time-series microarray data sets.
#@Hojung Nam,Ki Young Lee,Doheon Lee
#t2009
#cBMC Bioinformatics
#index1267275
#% 
#!
  
#*Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application.
#@Maria G. Roubelakis,Pantelis Zotos,Georgios Papachristoudis,Ioannis Michalopoulos,Kalliopi I. Pappa,Nicholas P. Anagnou,Sophia Kossida
#t2009
#cBMC Bioinformatics
#index1267276
#% 
#!
  
#*Efficient use of unlabeled data for protein sequence classification: a comparative study.
#@Pavel P. Kuksa,Pai-Hsi Huang,Vladimir Pavlovic
#t2009
#cBMC Bioinformatics
#index1267277
#% 
#!
  
#*Visualising biological data: a semantic approach to tool and database integration.
#@Steve Pettifer,David Thorne,Philip McDermott,James Marsh,Alice Villéger,Douglas B. Kell,Teresa K. Attwood
#t2009
#cBMC Bioinformatics
#index1267278
#% 
#!
  
#*Co-evolution positions and rules for antigenic variants of human influenza A/H3N2 viruses.
#@Jhang-Wei Huang,Chwan-Chuen King,Jinn-Moon Yang
#t2009
#cBMC Bioinformatics
#index1267279
#% 
#!
  
#*Towards comprehensive structural motif mining for better fold annotation in the "twilight zone" of sequence dissimilarity.
#@Yi Jia,Jun Huan,Vincent Buhr,Jintao Zhang,Leonidas N. Carayannopoulos
#t2009
#cBMC Bioinformatics
#index1267280
#% 
#!
  
#*Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data.
#@Tim Beck,Hugh Morgan,Andrew Blake,Sara Wells,John M. Hancock,Ann-Marie Mallon
#t2009
#cBMC Bioinformatics
#index1267281
#% 
#!
  
#*PCA-based population structure inference with generic clustering algorithms.
#@Chih Lee,Ali Abdool,Chun-Hsi Huang
#t2009
#cBMC Bioinformatics
#index1267282
#% 
#!
  
#*The "etiome": identification and clustering of human disease etiological factors.
#@Yueyi I. Liu,Paul H. Wise,Atul J. Butte
#t2009
#cBMC Bioinformatics
#index1267283
#% 
#!
  
#*Transcriptional interaction-assisted identification of dynamic nucleosome positioning.
#@Zhiming Dai,Xianhua Dai,Qian Xiang,Jihua Feng,Yangyang Deng,Jiang Wang,Caisheng He
#t2009
#cBMC Bioinformatics
#index1267284
#% 
#!
  
#*A novel similarity-measure for the analysis of genetic data in complex phenotypes.
#@Vincenzo Lagani,Alberto Montesanto,Fausta Di Cianni,Victor Moreno,Stefano Landi,Domenico Conforti,Giuseppina Rose,Giuseppe Passarino
#t2009
#cBMC Bioinformatics
#index1267285
#% 
#!
  
#*Studying the unfolding process of protein G and protein L under physical property space.
#@Liling Zhao,Jihua Wang,Xianghua Dou,Zanxia Cao
#t2009
#cBMC Bioinformatics
#index1267286
#% 
#!
  
#*Massive non-natural proteins structure prediction using grid technologies.
#@Giovanni Minervini,Giuseppe Evangelista,Laura Villanova,Debora Slanzi,Davide De Lucrezia,Irene Poli,Pier Luigi Luisi,Fabio Polticelli
#t2009
#cBMC Bioinformatics
#index1267287
#% 
#!
  
#*Inversion-based genomic signatures.
#@Krister M. Swenson,Bernard M. E. Moret
#t2009
#cBMC Bioinformatics
#index1267288
#% 
#!
  
#*A computational analysis of SARS cysteine proteinase-octapeptide substrate interaction: implication for structure and active site binding mechanism.
#@Krongsakda Phakthanakanok,Khanok Ratanakhanokchai,Khin Lay Kyu,Pornthep Sompornpisut,Aaron Watts,Surapong Pinitglang
#t2009
#cBMC Bioinformatics
#index1267289
#% 
#!
  
#*Biclustering of microarray data with MOSPO based on crowding distance.
#@Junwan Liu,Zhoujun Li,Xiaohua Hu,Yiming Chen
#t2009
#cBMC Bioinformatics
#index1267290
#% 
#!
  
#*Fine-grained parallel RNAalifold algorithm for RNA secondary structure prediction on FPGA.
#@Fei Xia,Yong Dou,Xingming Zhou,Xuejun Yang,Jiaqing Xu,Yang Zhang
#t2009
#cBMC Bioinformatics
#index1267291
#% 
#!
  
#*Reconstructing the virulome of the human pathogen using NMPDR subsystems-based annotation.
#@Ramy K. Aziz,Leslie Klis McNeil
#t2009
#cBMC Bioinformatics
#index1267292
#% 
#!
  
#*Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information.
#@Je-Gun Joung,Zhangjun Fei
#t2009
#cBMC Bioinformatics
#index1267293
#% 
#!
  
#*Identifying promoter features of co-regulated genes with similar network motifs.
#@Oscar Harari,Coral del Val,Rocío Romero-Záliz,Dongwoo Shin,Henry Huang,Eduardo A. Groisman,Igor Zwir
#t2009
#cBMC Bioinformatics
#index1267294
#% 
#!
  
#*Identifying disease associations via genome-wide association studies.
#@Wenhui Huang,Pengyuan Wang,Zhen Liu,Liqing Zhang
#t2009
#cBMC Bioinformatics
#index1267295
#% 
#!
  
#*Computational neuroanatomy: ontology-based representation of neural components and connectivity.
#@Daniel L. Rubin,Ion-Florin Talos,Michael Halle,Mark A. Musen,Ron Kikinis
#t2009
#cBMC Bioinformatics
#index1267296
#% 
#!
  
#*Ontology driven integration platform for clinical and translational research.
#@Parsa Mirhaji,Min Zhu,Mattew Vagnoni,Elmer V. Bernstam,Jiajie Zhang,Jack W. Smith
#t2009
#cBMC Bioinformatics
#index1267297
#% 
#!
  
#*A new graph-based method for pairwise global network alignment.
#@Gunnar W. Klau
#t2009
#cBMC Bioinformatics
#index1267298
#% 
#!
  
#*BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology.
#@Robert Hoehndorf,Joshua Bacher,Michael Backhaus,Sergio E. Gregorio Jr.,Frank Loebe,Kay Prüfer,Alexandr Uciteli,Johann Visagie,Heinrich Herre,Janet Kelso
#t2009
#cBMC Bioinformatics
#index1267299
#% 
#!
  
#*Quality assessment of tandem mass spectra using support vector machine (SVM).
#@An-Min Zou,Fang-Xiang Wu,Jiarui Ding,Guy G. Poirier
#t2009
#cBMC Bioinformatics
#index1267300
#% 
#!
  
#*LSI based framework to predict gene regulatory information.
#@Sujoy Roy,Lijing Xu,Ramin Homayouni
#t2009
#cBMC Bioinformatics
#index1267301
#% 
#!
  
#*Partial correlation analysis indicates causal relationships between GC-content, exon density and recombination rate in the human genome.
#@Jan Freudenberg,Mingyi Wang,Yaning Yang,Wentian Li
#t2009
#cBMC Bioinformatics
#index1267302
#% 
#!
  
#*Flipping NextGen: using biological systems to characterize NextGen sequencing technologies.
#@Jarret Glasscock,Ryan Richt,Matthew T. Hickenbotham
#t2009
#cBMC Bioinformatics
#index1267303
#% 
#!
  
#*Visualizing and sharing results in bioinformatics projects: GBrowse and GenBank exports.
#@Elissaveta G. Arnaoudova,Philip J. Bowens,Roger G. Chui,Randy D. Dinkins,Uljana Hesse,Jerzy W. Jaromczyk,Mitchell Martin,Paul Maynard,Neil Moore,Chris L. Schardl
#t2009
#cBMC Bioinformatics
#index1267304
#% 
#!
  
#*Motif Tool Manager: a web-based platform for motif discovery.
#@Vinhthuy Phan
#t2009
#cBMC Bioinformatics
#index1267305
#% 
#!
  
#*TGF-beta signaling proteins and the Protein Ontology.
#@Cecilia N. Arighi,Hongfang Liu,Darren A. Natale,Winona C. Barker,Harold J. Drabkin,Judith A. Blake,Barry Smith,Cathy H. Wu
#t2009
#cBMC Bioinformatics
#index1267306
#% 
#!
  
#*Transcriptional profiling of CD4 T-lymphocytes reveals abnormal gene expression in young prediabetic NOD mice.
#@Dorothy N. Kakoola,Nataliya Lenchik,Anita Curcio-Brint,Ivan Gerling
#t2009
#cBMC Bioinformatics
#index1267307
#% 
#!
  
#*A kernel-based approach for detecting outliers of high-dimensional biological data.
#@Jung Hun Oh,Jean Gao
#t2009
#cBMC Bioinformatics
#index1267308
#% 
#!
  
#*Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX.
#@Alvaro Martinez Barrio,Erik Lagercrantz,Göran O. Sperber,Jonas Blomberg,Erik Bongcam-Rudloff
#t2009
#cBMC Bioinformatics
#index1267309
#% 
#!
  
#*CGTS: a site-clustering graph based tagSNP selection algorithm in genotype data.
#@Jun Wang,Maozu Guo,Chun-yu Wang
#t2009
#cBMC Bioinformatics
#index1267310
#% 
#!
  
#*A new classification method using array Comparative Genome Hybridization data, based on the concept of Limited Jumping Emerging Patterns.
#@Tomasz Gambin,Krzysztof Walczak
#t2009
#cBMC Bioinformatics
#index1267311
#% 
#!
  
#*BioProspecting: novel marker discovery obtained by mining the bibleome.
#@Peter L. Elkin,Mark S. Tuttle,Brett E. Trusko,Steven H. Brown
#t2009
#cBMC Bioinformatics
#index1267312
#% 
#!
  
#*Prediction of peptide drift time in ion mobility-mass spectrometry.
#@Bing Wang,Steve Valentine,Sriram Raghuraman,Manolo Plasencia,Xiang Zhang
#t2009
#cBMC Bioinformatics
#index1267313
#% 
#!
  
#*Metadata mapping and reuse in caBIG.
#@Isaac Kunz,Ming-Chin Lin,Lewis Frey
#t2009
#cBMC Bioinformatics
#index1267314
#% 
#!
  
#*Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text.
#@Yael Garten,Russ B. Altman
#t2009
#cBMC Bioinformatics
#index1267315
#% 
#!
  
#*Leveraging existing biological knowledge in the identification of candidate genes for facial dysmorphology.
#@Hannah J. Tipney,Sonia M. Leach,Weiguo Feng,Richard Spritz,Trevor Williams,Lawrence Hunter
#t2009
#cBMC Bioinformatics
#index1267316
#% 
#!
  
#*Ontology-driven indexing of public datasets for translational bioinformatics.
#@Nigam H. Shah,Clement Jonquet,Annie P. Chiang,Atul J. Butte,Rong Chen,Mark A. Musen
#t2009
#cBMC Bioinformatics
#index1267317
#% 
#!
  
#*Prediction of amyloid fibril-forming segments based on a support vector machine.
#@Jian Tian,Ningfeng Wu,Jun Guo,Yunliu Fan
#t2009
#cBMC Bioinformatics
#index1267318
#% 
#!
  
#*Core and periphery structures in protein interaction networks.
#@Feng Luo,Bo Li,Xiu-Feng Wan,Richard H. Scheuermann
#t2009
#cBMC Bioinformatics
#index1267319
#% 
#!
  
#*Microarray analysis and quantitative real-time PCR validation of gene expression during auditory hair cell regeneration in zebrafish ().
#@Julie B. Schuck,Chia-Hui Lin,William T. Penberthy,Xiaohong Li,Nigel G. F. Cooper,Michael E. Smith
#t2009
#cBMC Bioinformatics
#index1267320
#% 
#!
  
#*Mining metastasis related genes by primary-secondary tumor comparisons from large-scale databases.
#@Sangwoo Kim,Doheon Lee
#t2009
#cBMC Bioinformatics
#index1267321
#% 
#!
  
#*Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements.
#@Teresa Maria Creanza,David Stephen Horner,Annarita D'Addabbo,Rosalia Maglietta,Flavio Mignone,Nicola Ancona,Graziano Pesole
#t2009
#cBMC Bioinformatics
#index1267322
#% 
#!
  
#*RetroTector online, a rational tool for analysis of retroviral elements in small and medium size vertebrate genomic sequences.
#@Göran O. Sperber,Anders Lövgren,Nils-Einar Eriksson,Farid Benachenhou,Jonas Blomberg
#t2009
#cBMC Bioinformatics
#index1267323
#% 
#!
  
#*Molecular dissection of cardiac hypertrophy induced by interleukin-18.
#@Sirshendu Majumdar,I. Maria Johnson,Gipsy Majumdar,William J. Valentine,Rajendra Raghow
#t2009
#cBMC Bioinformatics
#index1267324
#% 
#!
  
#*A fast algorithm for genome-wide haplotype pattern mining.
#@Søren Besenbacher,Christian N. S. Pedersen,Thomas Mailund
#t2009
#cBMC Bioinformatics
#index1267325
#% 
#!
  
#*HHMMiR: efficient prediction of microRNAs using hierarchical hidden Markov models.
#@Sabah Kadri,Veronica Hinman,Panayiotis V. Benos
#t2009
#cBMC Bioinformatics
#index1267326
#% 
#!
  
#*Towards bioinformatics assisted infectious disease control.
#@Vitali Sintchenko,Blanca Gallego,Grace Chung,Enrico W. Coiera
#t2009
#cBMC Bioinformatics
#index1267327
#% 
#!
  
#*Principal component tests: applied to temporal gene expression data.
#@Wensheng Zhang,Hong-Bin Fang,Jiuzhou Song
#t2009
#cBMC Bioinformatics
#index1267328
#% 
#!
  
#*Detecting disease-associated genotype patterns.
#@Quan Long,Qingrun Zhang,Jurg Ott
#t2009
#cBMC Bioinformatics
#index1267329
#% 
#!
  
#*A method to improve protein subcellular localization prediction by integrating various biological data sources.
#@Thai Quang Tung,Doheon Lee
#t2009
#cBMC Bioinformatics
#index1267330
#% 
#!
  
#*Proceedings of the Eighth Annual UT-ORNL-KBRIN Bioinformatics Summit 2009.
#@Eric C. Rouchka,Julia Krushkal
#t2009
#cBMC Bioinformatics
#index1267331
#% 
#!
  
#*Comparison of Affymetrix data normalization methods using 6, 926 experiments across five array generations.
#@Reija Autio,Sami Kilpinen,Matti Saarela,Olli-P. Kallioniemi,Sampsa Hautaniemi,Jaakko Astola
#t2009
#cBMC Bioinformatics
#index1267332
#% 
#!
  
#*Identification of histone modifications in biomedical text for supporting epigenomic research.
#@Corinna Kolárik,Roman Klinger,Martin Hofmann-Apitius
#t2009
#cBMC Bioinformatics
#index1267333
#% 
#!
  
#*Parallelized pairwise sequence alignment using CUDA on multiple GPUs.
#@Sungbo Jung
#t2009
#cBMC Bioinformatics
#index1267334
#% 
#!
  
#*Network-based support vector machine for classification of microarray samples.
#@Yanni Zhu,Xiaotong Shen,Wei Pan
#t2009
#cBMC Bioinformatics
#index1267335
#% 
#!
  
#*SE: an algorithm for deriving sequence alignment from a pair of superimposed structures.
#@Chin-Hsien Tai,James J. Vincent,Changhoon Kim,Byungkook Lee
#t2009
#cBMC Bioinformatics
#index1267336
#% 
#!
  
#*A statistical framework for integrating two microarray data sets in differential expression analysis.
#@Yinglei Lai,Sarah E. Eckenrode,Jin-Xiong She
#t2009
#cBMC Bioinformatics
#index1267337
#% 
#!
  
#*Using random forest for reliable classification and cost-sensitive learning for medical diagnosis.
#@Fan Yang,Hua-zhen Wang,Hong Mi,Cheng-de Lin,Wei-wen Cai
#t2009
#cBMC Bioinformatics
#index1267338
#% 
#!
  
#*Mutual information estimation reveals global associations between stimuli and biological processes.
#@Taiji Suzuki,Masashi Sugiyama,Takafumi Kanamori,Jun Sese
#t2009
#cBMC Bioinformatics
#index1267339
#% 
#!
  
#*ModuleDigger: an itemset mining framework for the detection of -regulatory modules.
#@Hong Sun,Tijl De Bie,Valerie Storms,Qiang Fu,Thomas Dhollander,Karen Lemmens,Annemieke Verstuyf,Bart De Moor,Kathleen Marchal
#t2009
#cBMC Bioinformatics
#index1267340
#% 
#!
  
#*Passage relevance models for genomics search.
#@Jay Urbain,Ophir Frieder,Nazli Goharian
#t2009
#cBMC Bioinformatics
#index1267341
#%957811
#!
  
#*Human gene expression sensitivity according to large scale meta-analysis.
#@Pei Hao,SiYuan Zheng,Jie Ping,Kang Tu,Christian Gieger,Rui Wang-Sattler,Yang Zhong,Yixue Li
#t2009
#cBMC Bioinformatics
#index1267342
#% 
#!
  
#*Using tree diversity to compare phylogenetic heuristics.
#@Seung-Jin Sul,Suzanne Matthews,Tiffani L. Williams
#t2009
#cBMC Bioinformatics
#index1267343
#% 
#!
  
#*Sequence-structure relations of pseudoknot RNA.
#@Fenix W. D. Huang,Linda Y. M. Li,Christian M. Reidys
#t2009
#cBMC Bioinformatics
#index1267344
#% 
#!
  
#*Selected proceedings of the First Summit on Translational Bioinformatics 2008.
#@Atul J. Butte,Indra Neil Sarkar,Marco Ramoni,Yves A. Lussier,Olga G. Troyanskaya
#t2009
#cBMC Bioinformatics
#index1267345
#% 
#!
  
#*Improved algorithms for approximate string matching (extended abstract).
#@Dimitrios P. Papamichail,Georgios P. Papamichail
#t2009
#cBMC Bioinformatics
#index1267346
#% 
#!
  
#*Slim-Prim: an integrated data system for clinical and translational research.
#@Teeradache Viangteeravat,Ian Brooks,Somchan Vuthipadadon,Eunice Huang,Ebony Smith,Ramin Homayouni,Chanchai McDonald
#t2009
#cBMC Bioinformatics
#index1267347
#% 
#!
  
#*Copy-number-variation and copy-number-alteration region detection by cumulative plots.
#@Wentian Li,Annette Lee,Peter K. Gregersen
#t2009
#cBMC Bioinformatics
#index1267348
#% 
#!
  
#*Genome aliquoting with double cut and join.
#@Robert Warren,David Sankoff
#t2009
#cBMC Bioinformatics
#index1267349
#% 
#!
  
#*Minimizing recombinations in consensus networks for phylogeographic studies.
#@Laxmi Parida,Asif Javed,Marta Melé,Francesc Calafell,Jaume Bertranpetit,Genographic Consortium
#t2009
#cBMC Bioinformatics
#index1267350
#% 
#!
  
#*Modeling heterocyst pattern formation in cyanobacteria.
#@Ziomara P. Gerdtzen,J. Cristian Salgado,Axel Osses,Juan A. Asenjo,Ivan Rapaport,Barbara A. Andrews
#t2009
#cBMC Bioinformatics
#index1267351
#% 
#!
  
#*Analysis of multiplex gene expression maps obtained by voxelation.
#@Li An,Hongbo Xie,Mark H. Chin,Zoran Obradovic,Desmond J. Smith,Vasileios Megalooikonomou
#t2009
#cBMC Bioinformatics
#index1267352
#% 
#!
  
#*Functional assessment of time course microarray data.
#@María José Nueda,Patricia Sebastián,Sonia Tarazona,Francisco García-García,Joaquín Dopazo,Alberto Ferrer,Ana Conesa
#t2009
#cBMC Bioinformatics
#index1267353
#% 
#!
  
#*A bioinformatics knowledge discovery in text application for grid computing.
#@Marcello Castellano,Giuseppe Mastronardi,Roberto Bellotti,Gianfranco Tarricone
#t2009
#cBMC Bioinformatics
#index1267354
#% 
#!
  
#*iBarcode.org: web-based molecular biodiversity analysis.
#@Gregory A. C. Singer,Mehrdad Hajibabaei
#t2009
#cBMC Bioinformatics
#index1267355
#% 
#!
  
#*Maximum independent sets of commuting and noninterfering inversions.
#@Krister M. Swenson,Yokuki To,Jijun Tang,Bernard M. E. Moret
#t2009
#cBMC Bioinformatics
#index1267356
#% 
#!
  
#*Prediction of RNA secondary structure with pseudoknots using integer programming.
#@Unyanee Poolsap,Yuki Kato,Tatsuya Akutsu
#t2009
#cBMC Bioinformatics
#index1267357
#% 
#!
  
#*Bioinformatic analysis of gene regulation in .
#@Julia Krushkal,Yanhua Qu,Peter Brown,Sreedhar Sontineni,Toshiyuki Ueki,Katy Juarez,Ching Leang,Enrique Merino,Jeanette Peeples,Jose F. Barbe,Ronald M. Adkins,Derek R. Lovley
#t2009
#cBMC Bioinformatics
#index1267358
#% 
#!
  
#*Genome-scale analysis to the impact of gene deletion on the metabolism of : constraint-based simulation approach.
#@Zixiang Xu,Xiao Sun,Shihai Yu
#t2009
#cBMC Bioinformatics
#index1267359
#% 
#!
  
#*Databases of homologous gene families for comparative genomics.
#@Simon Penel,Anne-Muriel Arigon,Jean-François Dufayard,Anne-Sophie Sertier,Vincent Daubin,Laurent Duret,Manolo Gouy,Guy Perrière
#t2009
#cBMC Bioinformatics
#index1267360
#% 
#!
  
#*Inferring novel disease indications for known drugs by semantically linking drug action and disease mechanism relationships.
#@Xiaoyan A. Qu,Ranga Chandra Gudivada,Anil G. Jegga,Eric K. Neumann,Bruce J. Aronow
#t2009
#cBMC Bioinformatics
#index1267361
#% 
#!
  
#*Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty.
#@Ankit Agrawal,Xiaoqiu Huang
#t2009
#cBMC Bioinformatics
#index1267362
#% 
#!
  
#*Expression pattern divergence of duplicated genes in rice.
#@Zhe Li,He Zhang,Song Ge,Xiaocheng Gu,Ge Gao,Jingchu Luo
#t2009
#cBMC Bioinformatics
#index1267363
#% 
#!
  
#*DNA motif alignment by evolving a population of Markov chains.
#@Chengpeng Bi
#t2009
#cBMC Bioinformatics
#index1267364
#% 
#!
  
#*Identifying hypothetical genetic influences on complex disease phenotypes.
#@Benjamin J. Keller,Richard C. McEachin
#t2009
#cBMC Bioinformatics
#index1267365
#% 
#!
  
#*Pathogenic in the progressive gene losses and gains in adaptive evolution.
#@G. X. Yu
#t2009
#cBMC Bioinformatics
#index1267366
#% 
#!
  
#*Triplet supertree heuristics for the tree of life.
#@Harris T. Lin,J. Gordon Burleigh,Oliver Eulenstein
#t2009
#cBMC Bioinformatics
#index1267367
#% 
#!
  
#*Comparison of annotation terms between automated and curated K12 databases.
#@ReddySailaja Marpuri,Claire A. Rinehart
#t2009
#cBMC Bioinformatics
#index1267368
#% 
#!
  
#*Extract interaction detection methods from the biological literature.
#@Hongning Wang,Minlie Huang,Xiaoyan Zhu
#t2009
#cBMC Bioinformatics
#index1267369
#% 
#!
  
#*Methods for comparative metagenomics.
#@Daniel H. Huson,Daniel C. Richter,Suparna Mitra,Alexander F. Auch,Stephan C. Schuster
#t2009
#cBMC Bioinformatics
#index1267370
#% 
#!
  
#*ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets.
#@Guan Ning Lin,Zhipeng Cai,Guohui Lin,Sounak Chakraborty,Dong Xu
#t2009
#cBMC Bioinformatics
#index1267371
#% 
#!
  
#*Computational prediction of novel non-coding RNAs in .
#@Dandan Song,Yang Yang,Bin Yu,Binglian Zheng,Zhidong Deng,Bao-Liang Lu,Xuemei Chen,Tao Jiang
#t2009
#cBMC Bioinformatics
#index1267372
#% 
#!
  
#*A voting approach to identify a small number of highly predictive genes using multiple classifiers.
#@Md. Rafiul Hassan,M. Maruf Hossain,James Bailey,Geoff Macintyre,Joshua Wing Kei Ho,Kotagiri Ramamohanarao
#t2009
#cBMC Bioinformatics
#index1267373
#% 
#!
  
#*REMAS: a new regression model to identify alternative splicing events from exon array data.
#@Hao Zheng,Xingyi Hang,Ji Zhu,Minping Qian,Wubin Qu,Chenggang Zhang,Minghua Deng
#t2009
#cBMC Bioinformatics
#index1267374
#% 
#!
  
#*Bioinformatics determination of ETEC signature genes as potential targets for molecular diagnosis and reverse vaccinology.
#@Heba M. Amin,Abdel-Gawad M. Hashem,Ramy K. Aziz
#t2009
#cBMC Bioinformatics
#index1267375
#% 
#!
  
#*Searching for bidirectional promoters in .
#@Quan Wang,Lin Wan,Dayong Li,Lihuang Zhu,Minping Qian,Minghua Deng
#t2009
#cBMC Bioinformatics
#index1267376
#% 
#!
  
#*Short read DNA fragment anchoring algorithm.
#@Wendi Wang,Peiheng Zhang,Xinchun Liu
#t2009
#cBMC Bioinformatics
#index1267377
#% 
#!
  
#*Issues in learning an ontology from text.
#@Christopher Brewster,Simon Jupp,Joanne S. Luciano,David Shotton,Robert D. Stevens,Ziqi Zhang
#t2009
#cBMC Bioinformatics
#index1267378
#% 
#!
  
#*Parallel short sequence assembly of transcriptomes.
#@Benjamin G. Jackson,Patrick S. Schnable,Srinivas Aluru
#t2009
#cBMC Bioinformatics
#index1267379
#% 
#!
  
#*Finding optimal threshold for correction error reads in DNA assembling.
#@Francis Y. L. Chin,Henry C. M. Leung,Wei-Lin Li,Siu-Ming Yiu
#t2009
#cBMC Bioinformatics
#index1267380
#% 
#!
  
#*Systematic assignment of thermodynamic constraints in metabolic network models.
#@Anne Kümmel,Sven Panke,Matthias Heinemann
#t2006
#cBMC Bioinformatics
#index1267381
#% 
#!
  
#*Finding motif pairs in the interactions between heterogeneous proteins via bootstrapping and boosting.
#@Jisu Kim,De-Shuang Huang,Kyungsook Han
#t2009
#cBMC Bioinformatics
#index1267382
#% 
#!
  
#*Sorting by reversals, block interchanges, tandem duplications, and deletions.
#@Martin Bader
#t2009
#cBMC Bioinformatics
#index1267383
#% 
#!
  
#*Fast max-margin clustering for unsupervised word sense disambiguation in biomedical texts.
#@Weisi Duan,Min Song,Alexander Yates
#t2009
#cBMC Bioinformatics
#index1267384
#% 
#!
  
#*DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.
#@Endre Sebestyén,Tibor Nagy,Sándor Suhai,Endre Barta
#t2009
#cBMC Bioinformatics
#index1267385
#% 
#!
  
#*Mixture of experts models to exploit global sequence similarity on biomolecular sequence labeling.
#@Cornelia Caragea,Jivko Sinapov,Drena Dobbs,Vasant Honavar
#t2009
#cBMC Bioinformatics
#index1267386
#% 
#!
  
#*Comparative analysis of the JAK/STAT signaling through erythropoietin receptor and thrombopoietin receptor using a systems approach.
#@Hong-Hee Won,Inho Park,Eunjung Lee,Jong-Won Kim,Doheon Lee
#t2009
#cBMC Bioinformatics
#index1267387
#% 
#!
  
#*Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differences.
#@Yan Fu,Wei Jia,Zhuang Lu,Haipeng Wang,Zuofei Yuan,Hao Chi,You Li,Liyun Xiu,Wenping Wang,Chao Liu,Leheng Wang,Ruixiang Sun,Wen Gao,Xiaohong Qian,Simin He
#t2009
#cBMC Bioinformatics
#index1267388
#% 
#!
  
#*A methodology for global validation of microarray experiments.
#@Mathieu Miron,Owen Z. Woody,Alexandre Marcil,Carl Murie,Robert Sladek,Robert Nadon
#t2006
#cBMC Bioinformatics
#index1267389
#% 
#!
  
#*BioMoby extensions to the Taverna workflow management and enactment software.
#@Edward Kawas,Martin Senger,Mark D. Wilkinson
#t2006
#cBMC Bioinformatics
#index1267390
#% 
#!
  
#*Robust methods for accurate diagnosis using pan-microbiological oligonucleotide microarrays.
#@Yang Liu,Lee T. Sam,Jianrong Li,Yves A. Lussier
#t2009
#cBMC Bioinformatics
#index1267391
#% 
#!
  
#*A joint model of regulatory and metabolic networks.
#@Chen-Hsiang Yeang,Martin Vingron
#t2006
#cBMC Bioinformatics
#index1267392
#% 
#!
  
#*Using ESTs to improve the accuracy of gene prediction.
#@Chaochun Wei,Michael R. Brent
#t2006
#cBMC Bioinformatics
#index1267393
#% 
#!
  
#*Prediction of catalytic residues using Support Vector Machine with selected protein sequence and structural properties.
#@Natalia V. Petrova,Cathy H. Wu
#t2006
#cBMC Bioinformatics
#index1267394
#% 
#!
  
#*How repetitive are genomes?
#@Bernhard Haubold,Thomas Wiehe
#t2006
#cBMC Bioinformatics
#index1267395
#% 
#!
  
#*Improving the accuracy of protein secondary structure prediction using structural alignment.
#@Scott Montgomerie,Shan Sundararaj,Warren J. Gallin,David S. Wishart
#t2006
#cBMC Bioinformatics
#index1267396
#% 
#!
  
#*Individualized markers optimize class prediction of microarray data.
#@Pavlos Pavlidis,Panayiota Poirazi
#t2006
#cBMC Bioinformatics
#index1267397
#% 
#!
  
#*Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.
#@Ian B. Jeffery,Desmond G. Higgins,Aedín C. Culhane
#t2006
#cBMC Bioinformatics
#index1267398
#% 
#!
  
#*iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website.
#@Benjamin M. Good,Edward A. Kawas,Byron Yu-Lin Kuo,Mark D. Wilkinson
#t2006
#cBMC Bioinformatics
#index1267399
#% 
#!
  
#*Gene function classification using Bayesian models with hierarchy-based priors.
#@Babak Shahbaba,Radford M. Neal
#t2006
#cBMC Bioinformatics
#index1267400
#% 
#!
  
#*Grouping Gene Ontology terms to improve the assessment of gene set enrichment in microarray data.
#@Alex Lewin,Ian C. Grieve
#t2006
#cBMC Bioinformatics
#index1267401
#% 
#!
  
#*Validation and functional annotation of expression-based clusters based on gene ontology.
#@Ralf Steuer,Peter Humburg,Joachim Selbig
#t2006
#cBMC Bioinformatics
#index1267402
#% 
#!
  
#*Building multiclass classifiers for remote homology detection and fold recognition.
#@Huzefa Rangwala,George Karypis
#t2006
#cBMC Bioinformatics
#index1267403
#% 
#!
  
#*Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks.
#@David J. Reiss,Nitin S. Baliga,Richard Bonneau
#t2006
#cBMC Bioinformatics
#index1267404
#% 
#!
  
#*A comparative analysis of the information content in long and short SAGE libraries.
#@Yi-Ju Li,Puting Xu,Xuejun Qin,Donald E. Schmechel,Christine M. Hulette,Jonathan L. Haines,Margaret A. Pericak-Vance,John R. Gilbert
#t2006
#cBMC Bioinformatics
#index1267405
#% 
#!
  
#*Empirical study of supervised gene screening.
#@Shuangge Ma
#t2006
#cBMC Bioinformatics
#index1267406
#% 
#!
  
#*Design of a combinatorial DNA microarray for protein-DNA interaction studies.
#@Julian Mintseris,Michael B. Eisen
#t2006
#cBMC Bioinformatics
#index1267407
#% 
#!
  
#*Quantification of the variation in percentage identity for protein sequence alignments.
#@G. P. S. Raghava,Geoffrey J. Barton
#t2006
#cBMC Bioinformatics
#index1267408
#% 
#!
  
#*CRNPRED: highly accurate prediction of one-dimensional protein structures by large-scale critical random networks.
#@Akira R. Kinjo,Ken Nishikawa
#t2006
#cBMC Bioinformatics
#index1267409
#% 
#!
  
#*Analysis of circular genome rearrangement by fusions, fissions and block-interchanges.
#@Chin Lung Lu,Yen-Lin Huang,Tsui Ching Wang,Hsien-Tai Chiu
#t2006
#cBMC Bioinformatics
#index1267410
#% 
#!
  
#*Statistical inference of chromosomal homology based on gene colinearity and applications to and rice.
#@Xiyin Wang,Xiaoli Shi,Zhe Li,Qihui Zhu,Lei Kong,Wen Tang,Song Ge,Jingchu Luo
#t2006
#cBMC Bioinformatics
#index1267411
#% 
#!
  
#*Semi-supervised discovery of differential genes.
#@Shigeyuki Oba,Shin Ishii
#t2006
#cBMC Bioinformatics
#index1267412
#% 
#!
  
#*A fisheye viewer for microarray-based gene expression data.
#@Min Wu,Cheng Thao,Xiangming Mu,Ethan V. Munson
#t2006
#cBMC Bioinformatics
#index1267413
#% 
#!
  
#*Automated functional classification of experimental and predicted protein structures.
#@Kai Wang,Ram Samudrala
#t2006
#cBMC Bioinformatics
#index1267414
#% 
#!
  
#*MathDAMP: a package for differential analysis of metabolite profiles.
#@Richard Baran,Hayataro Kochi,Natsumi Saito,Makoto Suematsu,Tomoyoshi Soga,Takaaki Nishioka,Martin Robert,Masaru Tomita
#t2006
#cBMC Bioinformatics
#index1267415
#% 
#!
  
#*Evaluating different methods of microarray data normalization.
#@André Fujita,João Ricardo Sato,Leonardo de Oliveira Rodrigues,Carlos Eduardo Ferreira,Mari Cleide Sogayar
#t2006
#cBMC Bioinformatics
#index1267416
#% 
#!
  
#*Representation of target-bound drugs by computed conformers: implications for conformational libraries.
#@Stefan Günther,Christian Senger,Elke Michalsky,Andrean Goede,Robert Preissner
#t2006
#cBMC Bioinformatics
#index1267417
#% 
#!
  
#*Predicting residue-wise contact orders in proteins by support vector regression.
#@Jiangning Song,Kevin Burrage
#t2006
#cBMC Bioinformatics
#index1267418
#% 
#!
  
#*Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.
#@Eric D. Scheeff,Philip E. Bourne
#t2006
#cBMC Bioinformatics
#index1267419
#% 
#!
  
#*Whole genome association mapping by incompatibilities and local perfect phylogenies.
#@Thomas Mailund,Søren Besenbacher,Mikkel H. Schierup
#t2006
#cBMC Bioinformatics
#index1267420
#% 
#!
  
#*Discovery of cancer vaccination protocols with a genetic algorithm driving an agent based simulator.
#@Pierluigi Lollini,Santo Motta,Francesco Pappalardo
#t2006
#cBMC Bioinformatics
#index1267421
#% 
#!
  
#*CoXpress: differential co-expression in gene expression data.
#@Michael Watson
#t2006
#cBMC Bioinformatics
#index1267422
#% 
#!
  
#*A fast SCOP fold classification system using content-based E-Predict algorithm.
#@Pin-Hao Chi,Chi-Ren Shyu,Dong Xu
#t2006
#cBMC Bioinformatics
#index1267423
#% 
#!
  
#*PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments.
#@Björn Usadel,Axel Nagel,Dirk Steinhauser,Yves Gibon,Oliver E. Bläsing,Henning Redestig,Nese Sreenivasulu,Leonard Krall,Matthew A. Hannah,Fabien Poree,Alisdair R. Fernie,Mark Stitt
#t2006
#cBMC Bioinformatics
#index1267424
#% 
#!
  
#*XML schemas for common bioinformatic data types and their application in workflow systems.
#@Philipp N. Seibel,Jan Krüger,Sven Hartmeier,Knut Schwarzer,Kai Löwenthal,Henning Mersch,Thomas Dandekar,Robert Giegerich
#t2006
#cBMC Bioinformatics
#index1267425
#% 
#!
  
#*MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution.
#@Jun Wang,Peter D. Keightley,Toby Johnson
#t2006
#cBMC Bioinformatics
#index1267426
#% 
#!
  
#*Goulphar: rapid access and expertise for standard two-color microarray normalization methods.
#@Sophie Lemoine,Florence Combes,Nicolas Servant,Stéphane Le Crom
#t2006
#cBMC Bioinformatics
#index1267427
#% 
#!
  
#*Subfamily logos: visualization of sequence deviations at alignment positions with high information content.
#@Eric Beitz
#t2006
#cBMC Bioinformatics
#index1267428
#% 
#!
  
#*Cancer diagnosis marker extraction for soft tissue sarcomas based on gene expression profiling data by using projective adaptive resonance theory (PART) filtering method.
#@Hiro Takahashi,Takeshi Nemoto,Teruhiko Yoshida,Hiroyuki Honda,Tadashi Hasegawa
#t2006
#cBMC Bioinformatics
#index1267429
#% 
#!
  
#*V-MitoSNP: visualization of human mitochondrial SNPs.
#@Li-Yeh Chuang,Cheng-Hong Yang,Yu-Huei Cheng,De-Leung Gu,Phei-Lang Chang,Ke-Hung Tsui,Hsueh-Wei Chang
#t2006
#cBMC Bioinformatics
#index1267430
#% 
#!
  
#*TreeDyn: towards dynamic graphics and annotations for analyses of trees.
#@François Chevenet,Christine Brun,Anne-Laure Bañuls,Bernard Jacq,Richard Christen
#t2006
#cBMC Bioinformatics
#index1267431
#% 
#!
  
#*CROPPER: a metagene creator resource for cross-platform and cross-species compendium studies.
#@Jussi Paananen,Markus Storvik,Garry Wong
#t2006
#cBMC Bioinformatics
#index1267432
#% 
#!
  
#*A direct comparison of protein interaction confidence assignment schemes.
#@Silpa Suthram,Tomer Shlomi,Eytan Ruppin,Roded Sharan,Trey Ideker
#t2006
#cBMC Bioinformatics
#index1267433
#% 
#!
  
#*AMDA: an R package for the automated microarray data analysis.
#@Mattia Pelizzola,Norman Pavelka,Maria Foti,Paola Ricciardi-Castagnoli
#t2006
#cBMC Bioinformatics
#index1267434
#% 
#!
  
#*Evaluation of clustering algorithms for protein-protein interaction networks.
#@Sylvain Brohée,Jacques van Helden
#t2006
#cBMC Bioinformatics
#index1267435
#% 
#!
  
#*CAFTAN: a tool for fast mapping, and quality assessment of cDNAs.
#@Coral del Val,Vladimir Yurjevich Kuryshev,Karl-Heinz Glatting,Peter Ernst,Agnes Hotz-Wagenblatt,Annemarie Poustka,Sándor Suhai,Stefan Wiemann
#t2006
#cBMC Bioinformatics
#index1267436
#% 
#!
  
#*Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores.
#@Jesper Salomon,Darren R. Flower
#t2006
#cBMC Bioinformatics
#index1267437
#% 
#!
  
#*ProtRepeatsDB: a database of amino acid repeats in genomes.
#@Mridul K. Kalita,Gowthaman Ramasamy,Sekhar Duraisamy,Virander S. Chauhan,Dinesh Gupta
#t2006
#cBMC Bioinformatics
#index1267438
#% 
#!
  
#*Analysis of optimal phenotypic space using elementary modes as applied to .
#@Kalyan Gayen,K. V. Venkatesh
#t2006
#cBMC Bioinformatics
#index1267439
#% 
#!
  
#*Functional clustering of yeast proteins from the protein-protein interaction network.
#@Taner Z. Sen,Andrzej Kloczkowski,Robert L. Jernigan
#t2006
#cBMC Bioinformatics
#index1267440
#% 
#!
  
#*Application of Petri net based analysis techniques to signal transduction pathways.
#@Andrea Sackmann,Monika Heiner,Ina Koch
#t2006
#cBMC Bioinformatics
#index1267441
#% 
#!
  
#*A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates.
#@Anne-Mette K. Hein,Sylvia Richardson
#t2006
#cBMC Bioinformatics
#index1267442
#% 
#!
  
#*A specialized learner for inferring structured cis-regulatory modules.
#@Keith Noto,Mark Craven
#t2006
#cBMC Bioinformatics
#index1267443
#% 
#!
  
#*Machine learning and word sense disambiguation in the biomedical domain: design and evaluation issues.
#@Hua Xu,Marianthi Markatou,Rositsa Dimova,Hongfang Liu,Carol Friedman
#t2006
#cBMC Bioinformatics
#index1267444
#% 
#!
  
#*DWARF - a data warehouse system for analyzing protein families.
#@Markus Fischer,Quan K. Thai,Melanie Grieb,Jürgen Pleiss
#t2006
#cBMC Bioinformatics
#index1267445
#% 
#!
  
#*Correction: genetic algorithm learning as a robust approach to RNA editing site site prediction.
#@James Thompson,Shuba Gopal
#t2006
#cBMC Bioinformatics
#index1267446
#% 
#!
  
#*The accuracy of several multiple sequence alignment programs for proteins.
#@Paulo A. S. Nuin,Zhouzhi Wang,Elisabeth R. M. Tillier
#t2006
#cBMC Bioinformatics
#index1267447
#% 
#!
  
#*PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data.
#@Kuo Ping Chiu,Chee-Hong Wong,Qiongyu Chen,Pramila Ariyaratne,Hong Sain Ooi,Chia-Lin Wei,Wing-Kin Sung,Yijun Ruan
#t2006
#cBMC Bioinformatics
#index1267448
#% 
#!
  
#*-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves.
#@Kenneth W. Berendzen,Kurt Stüber,Klaus Harter,Dierk Wanke
#t2006
#cBMC Bioinformatics
#index1267449
#% 
#!
  
#*MACSIMS : multiple alignment of complete sequences information management system.
#@Julie D. Thompson,Arnaud Muller,Andrew M. Waterhouse,James B. Procter,Geoffrey J. Barton,Frédéric Plewniak,Olivier Poch
#t2006
#cBMC Bioinformatics
#index1267450
#% 
#!
  
#*Differential prioritization between relevance and redundancy in correlation-based feature selection techniques for multiclass gene expression data.
#@Chia Huey Ooi,Madhu Chetty,Shyh Wei Teng
#t2006
#cBMC Bioinformatics
#index1267451
#% 
#!
  
#*HaploRec: efficient and accurate large-scale reconstruction of haplotypes.
#@Lauri Eronen,Floris Geerts,Hannu Toivonen
#t2006
#cBMC Bioinformatics
#index1267452
#% 
#!
  
#*Analysis with respect to instrumental variables for the exploration of microarray data structures.
#@Florent Baty,Michaël Facompré,Jan Wiegand,Joseph Schwager,Martin H. Brutsche
#t2006
#cBMC Bioinformatics
#index1267453
#% 
#!
  
#*QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species.
#@Jifeng Tang,Ben Vosman,Roeland E. Voorrips,C. Gerard van der Linden,Jack A. M. Leunissen
#t2006
#cBMC Bioinformatics
#index1267454
#% 
#!
  
#*The use of concept maps during knowledge elicitation in ontology development processes - the nutrigenomics use case.
#@Alexander García Castro,Philippe Rocca-Serra,Robert Stevens,Chris F. Taylor,Karim Nashar,Mark A. Ragan,Susanna-Assunta Sansone
#t2006
#cBMC Bioinformatics
#index1267455
#% 
#!
  
#*The bovine QTL viewer: a web accessible database of bovine Quantitative Trait Loci.
#@Pavana Polineni,Prathyusha Aragonda,Suresh R. Xavier,Richard Furuta,David L. Adelson
#t2006
#cBMC Bioinformatics
#index1267456
#% 
#!
  
#*Coloring the Mu transpososome.
#@Isabel K. Darcy,Jeff Chang,Nathan Druivenga,Colin McKinney,Ram K. Medikonduri,Stacy Mills,Junalyn Navarra-Madsen,Arun Ponnusamy,Jesse Sweet,Travis Thompson
#t2006
#cBMC Bioinformatics
#index1267457
#% 
#!
  
#*A simple method to combine multiple molecular biomarkers for dichotomous diagnostic classification.
#@Manju R. Mamtani,Tushar P. Thakre,Mrunal Y. Kalkonde,Manik A. Amin,Yogeshwar V. Kalkonde,Amit P. Amin,Hemant Kulkarni
#t2006
#cBMC Bioinformatics
#index1267458
#% 
#!
  
#*The effects of multiple features of alternatively spliced exons on the ratio test.
#@Feng-Chi Chen,Trees-Juen Chuang
#t2006
#cBMC Bioinformatics
#index1267459
#% 
#!
  
#*Integrated siRNA design based on surveying of features associated with high RNAi effectiveness.
#@Wuming Gong,Yongliang Ren,Qiqi Xu,Yejun Wang,Dong Lin,Haiyan Zhou,Tongbin Li
#t2006
#cBMC Bioinformatics
#index1267460
#% 
#!
  
#*PHY*FI: fast and easy online creation and manipulation of phylogeny color figures.
#@Jakob Fredslund
#t2006
#cBMC Bioinformatics
#index1267461
#% 
#!
  
#*Visual setup of logical models of signaling and regulatory networks with ProMoT.
#@Julio Saez-Rodriguez,Sebastian Mirschel,Rebecca Hemenway,Steffen Klamt,Ernst Dieter Gilles,Martin Ginkel
#t2006
#cBMC Bioinformatics
#index1267462
#% 
#!
  
#*PhyloPat: phylogenetic pattern analysis of eukaryotic genes.
#@Tim Hulsen,Jacob de Vlieg,Peter M. A. Groenen
#t2006
#cBMC Bioinformatics
#index1267463
#% 
#!
  
#*Identifying genes that contribute most to good classification in microarrays.
#@Stuart G. Baker,Barnett S. Kramer
#t2006
#cBMC Bioinformatics
#index1267464
#% 
#!
  
#*Mining frequent patterns for AMP-activated protein kinase regulation on skeletal muscle.
#@Qingfeng Chen,Yi-Ping Phoebe Chen
#t2006
#cBMC Bioinformatics
#index1267465
#% 
#!
  
#*Haplotype-based quantitative trait mapping using a clustering algorithm.
#@Jing Li,Yingyao Zhou,Robert C. Elston
#t2006
#cBMC Bioinformatics
#index1267466
#% 
#!
  
#*Genome comparison using Gene Ontology (GO) with statistical testing.
#@Zhaotao Cai,Xizeng Mao,Songgang Li,Liping Wei
#t2006
#cBMC Bioinformatics
#index1267467
#% 
#!
  
#*EVEREST: automatic identification and classification of protein domains in all protein sequences.
#@Elon Portugaly,Amir Harel,Nathan Linial,Michal Linial
#t2006
#cBMC Bioinformatics
#index1267468
#% 
#!
  
#*Automated in-silico detection of cell populations in flow cytometry readouts and its application to leukemia disease monitoring.
#@Joern Toedling,Peter Rhein,Richard Ratei,Leonid Karawajew,Rainer Spang
#t2006
#cBMC Bioinformatics
#index1267469
#% 
#!
  
#*HybGFS: a hybrid method for genome-fingerprint scanning.
#@Kosaku Shinoda,Nozomu Yachie,Takeshi Masuda,Naoyuki Sugiyama,Masahiro Sugimoto,Tomoyoshi Soga,Masaru Tomita
#t2006
#cBMC Bioinformatics
#index1267470
#% 
#!
  
#*ORENZA: a web resource for studying ORphan ENZyme activities.
#@Olivier Lespinet,Bernard Labedan
#t2006
#cBMC Bioinformatics
#index1267471
#% 
#!
  
#*The Virtual Insect Brain protocol: creating and comparing standardized neuroanatomy.
#@Arnim Jenett,Johannes E. Schindelin,Martin Heisenberg
#t2006
#cBMC Bioinformatics
#index1267472
#% 
#!
  
#*Detecting recombination in evolving nucleotide sequences.
#@Cheong Xin Chan,Robert G. Beiko,Mark A. Ragan
#t2006
#cBMC Bioinformatics
#index1267473
#% 
#!
  
#*Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor.
#@Oleksiy Kohany,Andrew J. Gentles,Lukasz Hankus,Jerzy Jurka
#t2006
#cBMC Bioinformatics
#index1267474
#% 
#!
  
#*Searching for interpretable rules for disease mutations: a simulated annealing bump hunting strategy.
#@Rui Jiang,Hua Yang,Fengzhu Sun,Ting Chen
#t2006
#cBMC Bioinformatics
#index1267475
#% 
#!
  
#*Cell_motility: a cross-platform, open source application for the study of cell motion paths.
#@Lennart Martens,Geert Monsieur,Christophe Ampe,Kris Gevaert,Joël Vandekerckhove
#t2006
#cBMC Bioinformatics
#index1267476
#% 
#!
  
#*Gene and protein nomenclature in public databases.
#@Katrin Fundel,Ralf Zimmer
#t2006
#cBMC Bioinformatics
#index1267477
#% 
#!
  
#*Comprehensive quality control utilizing the prehybridization third-dye image leads to accurate gene expression measurements by cDNA microarrays.
#@Xujing Wang,Shuang Jia,Lisa Meyer,Bixia Xiang,Li-Yen Chen,Nan Jiang,Carol Moreno,Howard J. Jacob,Soumitra Ghosh,Martin J. Hessner
#t2006
#cBMC Bioinformatics
#index1267478
#% 
#!
  
#*: A novel network feature to evaluate the importance of proteins in signal transduction networks.
#@Wei Liu,Dong Li,Jiyang Zhang,Yunping Zhu,Fuchu He
#t2006
#cBMC Bioinformatics
#index1267479
#% 
#!
  
#*SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology.
#@Bruz Marzolf,Eric W. Deutsch,Patrick Moss,David Campbell,Michael H. Johnson,Timothy Galitski
#t2006
#cBMC Bioinformatics
#index1267480
#% 
#!
  
#*Representing and comparing protein structures as paths in three-dimensional space.
#@Degui Zhi,S. Sri Krishna,Haibo Cao,Pavel A. Pevzner,Adam Godzik
#t2006
#cBMC Bioinformatics
#index1267481
#% 
#!
  
#*XRate: a fast prototyping, training and annotation tool for phylo-grammars.
#@Peter S. Klosterman,Andrew V. Uzilov,Yuri R. Bendaña,Robert K. Bradley,Sharon Chao,Carolin Kosiol,Nick Goldman,Ian Holmes
#t2006
#cBMC Bioinformatics
#index1267482
#% 
#!
  
#*Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments.
#@Maureen A. Sartor,Craig R. Tomlinson,Scott C. Wesselkamper,Siva Sivaganesan,George D. Leikauf,Mario Medvedovic
#t2006
#cBMC Bioinformatics
#index1267483
#% 
#!
  
#*BBP: genome annotation with literature mining and curation.
#@Zuoshuang Xiang,Wenjie Zheng,Yongqun He
#t2006
#cBMC Bioinformatics
#index1267484
#% 
#!
  
#*A statistical score for assessing the quality of multiple sequence alignments.
#@Virpi Ahola,Tero Aittokallio,Mauno Vihinen,Esa Uusipaikka
#t2006
#cBMC Bioinformatics
#index1267485
#% 
#!
  
#*Structure alignment based on coding of local geometric measures.
#@Peter L. Chang,Andrew W. Rinne,T. Gregory Dewey
#t2006
#cBMC Bioinformatics
#index1267486
#% 
#!
  
#*MANET: tracing evolution of protein architecture in metabolic networks.
#@Hee Shin Kim,Jay E. Mittenthal,Gustavo Caetano-Anollés
#t2006
#cBMC Bioinformatics
#index1267487
#% 
#!
  
#*Genomes as geography: using GIS technology to build interactive genome feature maps.
#@Mary E. Dolan,Constance C. Holden,M. Kate Beard,Carol J. Bult
#t2006
#cBMC Bioinformatics
#index1267488
#% 
#!
  
#*CAVER: a new tool to explore routes from protein clefts, pockets and cavities.
#@Martin Petrek,Michal Otyepka,Pavel Banás,Pavlína Kosinová,Jaroslav Koca,Jirí Damborský
#t2006
#cBMC Bioinformatics
#index1267489
#% 
#!
  
#*G-InforBIO: integrated system for microbial genomics.
#@Naoto Tanaka,Takashi Abe,Satoru Miyazaki,Hideaki Sugawara
#t2006
#cBMC Bioinformatics
#index1267490
#% 
#!
  
#*Inferring topology from clustering coefficients in protein-protein interaction networks.
#@Caroline C. Friedel,Ralf Zimmer
#t2006
#cBMC Bioinformatics
#index1267491
#% 
#!
  
#*Integrated functional visualization of eukaryotic genomes.
#@Rohit Ghai,Hannes Lindemann,Trinad Chakraborty
#t2006
#cBMC Bioinformatics
#index1267492
#% 
#!
  
#*An integrated approach to the prediction of domain-domain interactions.
#@Hyunju Lee,Minghua Deng,Fengzhu Sun,Ting Chen
#t2006
#cBMC Bioinformatics
#index1267493
#% 
#!
  
#*Normalization and expression changes in predefined of proteins using 2D gel electrophoresis: A proteomic study of L-DOPA induced dyskinesia in an animal model of Parkinson's disease using DIGE.
#@Kim Kultima,Birger Scholz,Henrik Alm,Karl Sköld,Marcus Svensson,Alan R. Crossman,Erwan Bezard,Per E. Andrén,Ingrid Lönnstedt
#t2006
#cBMC Bioinformatics
#index1267494
#% 
#!
  
#*A framework for protein structure classification and identification of novel protein structures.
#@You Jung Kim,Jignesh M. Patel
#t2006
#cBMC Bioinformatics
#index1267495
#% 
#!
  
#*STAR: predicting recombination sites from amino acid sequence.
#@Denis C. Bauer,Mikael Bodén,Ricarda Thier,Elizabeth M. Gillam
#t2006
#cBMC Bioinformatics
#index1267496
#% 
#!
  
#*The development and validation of the Virtual Tissue Matrix, a software application that facilitates the review of tissue microarrays on line.
#@Catherine M. Conway,Deirdre O'Shea,Sallyann O'Brien,Darragh K. Lawler,Graham D. Dodrill,Anthony O'Grady,Helen Barrett,Christian Gulmann,Lorraine O'Driscoll,William M. Gallagher,Elaine W. Kay,Daniel G. O'Shea
#t2006
#cBMC Bioinformatics
#index1267497
#% 
#!
  
#*IntNetDB v1.0: an integrated protein-protein interaction network database generated by a probabilistic model.
#@Kai Xia,Dong Dong,Jing-Dong J. Han
#t2006
#cBMC Bioinformatics
#index1267498
#% 
#!
  
#*Kernel-based distance metric learning for microarray data classification.
#@Huilin Xiong,Xue-wen Chen
#t2006
#cBMC Bioinformatics
#index1267499
#% 
#!
  
#*A correlated motif approach for finding short linear motifs from protein interaction networks.
#@Soon-Heng Tan,Hugo Willy,Wing-Kin Sung,See-Kiong Ng
#t2006
#cBMC Bioinformatics
#index1267500
#% 
#!
  
#*Novel knowledge-based mean force potential at the profile level.
#@Qiwen Dong,Xiaolong Wang,Lei Lin
#t2006
#cBMC Bioinformatics
#index1267501
#% 
#!
  
#*Gene Designer: a synthetic biology tool for constructing artificial DNA segments.
#@Alan Villalobos,Jon E. Ness,Claes Gustafsson,Jeremy Minshull,Sridhar Govindarajan
#t2006
#cBMC Bioinformatics
#index1267502
#% 
#!
  
#*A maximum likelihood framework for protein design.
#@Claudia L. Kleinman,Nicolas Rodrigue,Cécile Bonnard,Hervé Philippe,Nicolas Lartillot
#t2006
#cBMC Bioinformatics
#index1267503
#% 
#!
  
#*bioNMF: a versatile tool for non-negative matrix factorization in biology.
#@Alberto D. Pascual-Montano,Pedro Carmona-Saez,Monica Chagoyen,Francisco Tirado,José María Carazo,Roberto D. Pascual-Marqui
#t2006
#cBMC Bioinformatics
#index1267504
#% 
#!
  
#*ROKU: a novel method for identification of tissue-specific genes.
#@Koji Kadota,Jiazhen Ye,Yuji Nakai,Tohru Terada,Kentaro Shimizu
#t2006
#cBMC Bioinformatics
#index1267505
#% 
#!
  
#*Taking U out, with two nucleases?
#@I. Saira Mian,Elizabeth A. Worthey,Reza Salavati
#t2006
#cBMC Bioinformatics
#index1267506
#% 
#!
  
#*Feature selection using Haar wavelet power spectrum.
#@Prabakaran Subramani,Rajendra Sahu,Shekhar Verma
#t2006
#cBMC Bioinformatics
#index1267507
#% 
#!
  
#*Correlated fragile site expression allows the identification of candidate fragile genes involved in immunity and associated with carcinogenesis.
#@Angela Re,Davide Corà,Alda Maria Puliti,Michele Caselle,Isabella Sbrana
#t2006
#cBMC Bioinformatics
#index1267508
#% 
#!
  
#*Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains.
#@Alla Bulashevska,Roland Eils
#t2006
#cBMC Bioinformatics
#index1267509
#% 
#!
  
#*Recursive gene selection based on maximum margin criterion: a comparison with SVM-RFE.
#@Satoshi Niijima,Satoru Kuhara
#t2006
#cBMC Bioinformatics
#index1267510
#% 
#!
  
#*PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs.
#@Sylvain Pitre,Frank K. H. A. Dehne,Albert Chan,James Cheetham,Alex Duong,Andrew Emili,Marinella Gebbia,Jack Greenblatt,Matthew Jessulat,Nevan J. Krogan,Xuemei Luo,Ashkan Golshani
#t2006
#cBMC Bioinformatics
#index1267511
#% 
#!
  
#*Robust computational reconstitution - a new method for the comparative analysis of gene expression in tissues and isolated cell fractions.
#@Martin Hoffmann,Dirk Pohlers,Dirk Koczan,Hans-Jürgen Thiesen,Stefan Wölfl,Raimund W. Kinne
#t2006
#cBMC Bioinformatics
#index1267512
#% 
#!
  
#*JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.
#@Mariano Latorre,Herman Silva,Juan Saba,Carito Guziolowski,Paula Vizoso,Veronica Martinez,Jonathan Maldonado,Andrea Morales,Rodrigo Caroca,Veronica Cambiazo,Reinaldo Campos-Vargas,Mauricio Gonzalez,Ariel Orellana,Julio Retamales,Lee A. Meisel
#t2006
#cBMC Bioinformatics
#index1267513
#% 
#!
  
#*PeanutMap: an online genome database for comparative molecular maps of peanut.
#@Arun M. Jesubatham,Mark D. Burow
#t2006
#cBMC Bioinformatics
#index1267514
#% 
#!
  
#*Correcting ligands, metabolites, and pathways.
#@Martin A. Ott,Gert Vriend
#t2006
#cBMC Bioinformatics
#index1267515
#% 
#!
  
#*AceTree: a tool for visual analysis of embryogenesis.
#@Thomas J. Boyle,Zhirong Bao,John I. Murray,Carlos L. Araya,Robert H. Waterston
#t2006
#cBMC Bioinformatics
#index1267516
#% 
#!
  
#*AgdbNet - antigen sequence database software for bacterial typing.
#@Keith A. Jolley,Martin C. J. Maiden
#t2006
#cBMC Bioinformatics
#index1267517
#% 
#!
  
#*State of the art: refinement of multiple sequence alignments.
#@Saikat Chakrabarti,Christopher J. Lanczycki,Anna R. Panchenko,Teresa M. Przytycka,Paul A. Thiessen,Stephen H. Bryant
#t2006
#cBMC Bioinformatics
#index1267518
#% 
#!
  
#*Probe set algorithms: is there a rational best bet?
#@Jinwook Seo,Eric P. Hoffman
#t2006
#cBMC Bioinformatics
#index1267519
#% 
#!
  
#*MultiSeq: unifying sequence and structure data for evolutionary analysis.
#@Elijah Roberts,John Eargle,Dan Wright,Zaida Luthey-Schulten
#t2006
#cBMC Bioinformatics
#index1267520
#% 
#!
  
#*Docking protein domains in contact space.
#@Stefano Lise,Alice Walker-Taylor,David T. Jones
#t2006
#cBMC Bioinformatics
#index1267521
#% 
#!
  
#*MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics.
#@Irena Spasic,Warwick B. Dunn,Giles Velarde,Andy Tseng,Helen Jenkins,Nigel Hardy,Stephen G. Oliver,Douglas B. Kell
#t2006
#cBMC Bioinformatics
#index1267522
#% 
#!
  
#*GeneLibrarian: an effective gene-information summarization and visualization system.
#@Jung-Hsien Chiang,Jyh-Wei Shin,Heng-Hui Liu,Chong-Liang Chin
#t2006
#cBMC Bioinformatics
#index1267523
#% 
#!
  
#*An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution matrices.
#@Blazej Bulka,Marie desJardins,Stephen J. Freeland
#t2006
#cBMC Bioinformatics
#index1267524
#% 
#!
  
#*Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences.
#@Alexander F. Auch,Stefan R. Henz,Barbara R. Holland,Markus Göker
#t2006
#cBMC Bioinformatics
#index1267525
#% 
#!
  
#*SNP-PHAGE - High throughput SNP discovery pipeline.
#@Lakshmi K. Matukumalli,John J. Grefenstette,David L. Hyten,Ik-Young Choi,Perry B. Cregan,Curtis P. Van Tassell
#t2006
#cBMC Bioinformatics
#index1267526
#% 
#!
  
#*Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
#@Seon-Young Kim,YongSung Kim
#t2006
#cBMC Bioinformatics
#index1267527
#% 
#!
  
#*Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems.
#@Maria Rodriguez-Fernandez,Jose A. Egea,Julio R. Banga
#t2006
#cBMC Bioinformatics
#index1267528
#% 
#!
  
#*The Autoimmune Disease Database: a dynamically compiled literature-derived database.
#@Thomas Karopka,Juliane Fluck,Heinz-Theodor Mevissen,Änne Glass
#t2006
#cBMC Bioinformatics
#index1267529
#% 
#!
  
#*A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes.
#@Anne-Kathrin Schultz,Ming Zhang,Thomas Leitner,Carla Kuiken,Bette Korber,Burkhard Morgenstern,Mario Stanke
#t2006
#cBMC Bioinformatics
#index1267530
#% 
#!
  
#*SPODOBASE : an EST database for the lepidopteran crop pest .
#@Vincent Nègre,Thierry Hotelier,Anne-Nathalie Volkoff,Sylvie Gimenez,François Cousserans,Kazuei Mita,Xavier Sabau,Janick Rocher,Miguel López-Ferber,Emmanuelle d'Alençon,Pascaline Audant,Cécile Sabourault,Vincent Bidegainberry,Frédérique Hilliou,Philippe Fournier
#t2006
#cBMC Bioinformatics
#index1267531
#% 
#!
  
#*Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression.
#@Rodrigo Malig,Cristian Varela,Eduardo Agosin,Francisco Melo
#t2006
#cBMC Bioinformatics
#index1267532
#% 
#!
  
#*HeatMapper: powerful combined visualization of gene expression profile correlations, genotypes, phenotypes and sample characteristics.
#@Roel G. W. Verhaak,Mathijs A. Sanders,Maarten A. Bijl,Ruud Delwel,Sebastiaan Horsman,Michael J. Moorhouse,Peter van der Spek,Bob Löwenberg,Peter J. M. Valk
#t2006
#cBMC Bioinformatics
#index1267533
#% 
#!
  
#*Curation of complex, context-dependent immunological data.
#@Randi Vita,Kerrie Vaughan,Laura Zarebski,Nima Salimi,Ward Fleri,Howard Grey,Muthu Sathiamurthy,John Mokili,Huynh-Hoa Bui,Philip E. Bourne,Julia V. Ponomarenko,Romulo de Castro Jr.,Russell K. Chan,John Sidney,Stephen S. Wilson,Scott Stewart,Scott Way,Björn Peters,Alessandro Sette
#t2006
#cBMC Bioinformatics
#index1267534
#% 
#!
  
#*miTarget: microRNA target gene prediction using a support vector machine.
#@Sung-Kyu Kim,Jin-Wu Nam,Je-Keun Rhee,Wha-Jin Lee,Byoung-Tak Zhang
#t2006
#cBMC Bioinformatics
#index1267535
#% 
#!
  
#*The NeuARt II system: a viewing tool for neuroanatomical data based on published neuroanatomical atlases.
#@Gully A. P. C. Burns,Wei-Cheng Cheng,Richard H. Thompson,Larry W. Swanson
#t2006
#cBMC Bioinformatics
#index1267536
#% 
#!
  
#*A new measure for functional similarity of gene products based on Gene Ontology.
#@Andreas Schlicker,Francisco S. Domingues,Jörg Rahnenführer,Thomas Lengauer
#t2006
#cBMC Bioinformatics
#index1267537
#% 
#!
  
#*Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence.
#@Pufeng Du,Yanda Li
#t2006
#cBMC Bioinformatics
#index1267538
#% 
#!
  
#*Independent component analysis reveals new and biologically significant structures in micro array data.
#@Attila Frigyesi,Srinivas Veerla,David Lindgren,Mattias Höglund
#t2006
#cBMC Bioinformatics
#index1267539
#% 
#!
  
#*A novel data mining method to identify assay-specific signatures in functional genomic studies.
#@Derrick K. Rollins,Dongmei Zhai,Alrica L. Joe,Jack W. Guidarelli,Abhishek Murarka,Ramon Gonzalez
#t2006
#cBMC Bioinformatics
#index1267540
#% 
#!
  
#*Logarithmic gap costs decrease alignment accuracy.
#@Reed A. Cartwright
#t2006
#cBMC Bioinformatics
#index1267541
#% 
#!
  
#*Using the nucleotide substitution rate matrix to detect horizontal gene transfer.
#@Micah Hamady,M. D. Betterton,Rob Knight
#t2006
#cBMC Bioinformatics
#index1267542
#% 
#!
  
#*TaxMan: a taxonomic database manager.
#@Martin Jones,Mark Blaxter
#t2006
#cBMC Bioinformatics
#index1267543
#% 
#!
  
#*A probabilistic classifier for olfactory receptor pseudogenes.
#@Idan Menashe,Ronny Aloni,Doron Lancet
#t2006
#cBMC Bioinformatics
#index1267544
#% 
#!
  
#*SVRMHC prediction server for MHC-binding peptides.
#@Ji Wan,Wen Liu,Qiqi Xu,Yongliang Ren,Darren R. Flower,Tongbin Li
#t2006
#cBMC Bioinformatics
#index1267545
#% 
#!
  
#*Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations.
#@Michal J. Okoniewski,Crispin J. Miller
#t2006
#cBMC Bioinformatics
#index1267546
#% 
#!
  
#*MIMOX: a web tool for phage display based epitope mapping.
#@Jian Huang,Alex Gutteridge,Wataru Honda,Minoru Kanehisa
#t2006
#cBMC Bioinformatics
#index1267547
#% 
#!
  
#*Automatic document classification of biological literature.
#@David Chen,Hans-Michael Müller,Paul W. Sternberg
#t2006
#cBMC Bioinformatics
#index1267548
#% 
#!
  
#*Mining expressed sequence tags identifies cancer markers of clinical interest.
#@Fabien Campagne,Lucy Skrabanek
#t2006
#cBMC Bioinformatics
#index1267549
#% 
#!
  
#*Use of a multi-way method to analyze the amino acid composition of a conserved group of orthologous proteins in prokaryotes.
#@Alberto Pasamontes,Santiago Garcia-Vallvé
#t2006
#cBMC Bioinformatics
#index1267550
#% 
#!
  
#*Machine learning techniques in disease forecasting: a case study on rice blast prediction.
#@Rakesh Kaundal,Amar S. Kapoor,Gajendra P. S. Raghava
#t2006
#cBMC Bioinformatics
#index1267551
#% 
#!
  
#*REEF: searching REgionally Enriched Features in genomes.
#@Alessandro Coppe,Gian Antonio Danieli,Stefania Bortoluzzi
#t2006
#cBMC Bioinformatics
#index1267552
#% 
#!
  
#*Optimised amino acid specific weighting factors for unbound protein docking.
#@Philipp Heuser,Dietmar Schomburg
#t2006
#cBMC Bioinformatics
#index1267553
#% 
#!
  
#*Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis.
#@Aijazuddin Syed,Chris Upton
#t2006
#cBMC Bioinformatics
#index1267554
#% 
#!
  
#*methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.
#@Filip Pattyn,Jasmien Hoebeeck,Piet Robbrecht,Evi Michels,Anne De Paepe,Guy Bottu,David Coornaert,Robert Herzog,Frank Speleman,Jo Vandesompele
#t2006
#cBMC Bioinformatics
#index1267555
#% 
#!
  
#*Text mining of full-text journal articles combined with gene expression analysis reveals a relationship between sphingosine-1-phosphate and invasiveness of a glioblastoma cell line.
#@Jeyakumar Natarajan,Daniel P. Berrar,Werner Dubitzky,Catherine J. Hack,Yonghong Zhang,Catherine DeSesa,James R. Van Brocklyn,Eric G. Bremer
#t2006
#cBMC Bioinformatics
#index1267556
#% 
#!
  
#*Topological basis of signal integration in the transcriptional-regulatory network of the yeast, .
#@Illés J. Farkas,Chuang Wu,Chakra Chennubhotla,Ivet Bahar,Zoltán N. Oltvai
#t2006
#cBMC Bioinformatics
#index1267557
#% 
#!
  
#*Selecting normalization genes for small diagnostic microarrays.
#@Jochen Jaeger,Rainer Spang
#t2006
#cBMC Bioinformatics
#index1267558
#% 
#!
  
#*Integrative missing value estimation for microarray data.
#@Jianjun Hu,Haifeng Li,Michael S. Waterman,Xianghong Jasmine Zhou
#t2006
#cBMC Bioinformatics
#index1267559
#% 
#!
  
#*Chromosomal patterns of gene expression from microarray data: methodology, validation and clinical relevance in gliomas.
#@Federico E. Turkheimer,Federico Roncaroli,Benoit Hennuy,Christian Herens,Minh Nguyen,Didier Martin,Annick Evrard,Vincent Bours,Jacques Boniver,Manuel Deprez
#t2006
#cBMC Bioinformatics
#index1267560
#% 
#!
  
#*The BiSearch web server.
#@Tamás Arányi,András Váradi,István Simon,Gábor E. Tusnády
#t2006
#cBMC Bioinformatics
#index1267561
#% 
#!
  
#*Identification of putative domain linkers by a neural network - application to a large sequence database.
#@Satoshi Miyazaki,Yutaka Kuroda,Shigeyuki Yokoyama
#t2006
#cBMC Bioinformatics
#index1267562
#% 
#!
  
#*Identification of biomarkers from mass spectrometry data using a "common" peak approach.
#@Tadayoshi Fushiki,Hironori Fujisawa,Shinto Eguchi
#t2006
#cBMC Bioinformatics
#index1267563
#% 
#!
  
#*Hierarchical modularity of nested bow-ties in metabolic networks.
#@Jing Zhao,Hong Yu,Jianhua Luo,Zhi-Wei Cao,Yi-Xue Li
#t2006
#cBMC Bioinformatics
#index1267564
#% 
#!
  
#*RDMAS: a web server for RNA deleterious mutation analysis.
#@Wenjie Shu,Xiaochen Bo,Rujia Liu,Dongsheng Zhao,Zhiqiang Zheng,Shengqi Wang
#t2006
#cBMC Bioinformatics
#index1267565
#% 
#!
  
#*BLISS: biding site level identification of shared signal-modules in DNA regulatory sequences.
#@Hailong Meng,Arunava Banerjee,Lei Zhou
#t2006
#cBMC Bioinformatics
#index1267566
#% 
#!
  
#*Automated recognition of malignancy mentions in biomedical literature.
#@Yang Jin,Ryan T. McDonald,Kevin Lerman,Mark A. Mandel,Steven Carroll,Mark Y. Liberman,Fernando C. Pereira,Raymond S. Winters,Peter S. White
#t2006
#cBMC Bioinformatics
#index1267567
#% 
#!
  
#*Protein disorder prediction by condensed PSSM considering propensity for order or disorder.
#@Chung-Tsai Su,Chien-Yu Chen,Yu-Yen Ou
#t2006
#cBMC Bioinformatics
#index1267568
#% 
#!
  
#*Genome-wide DNA polymorphism analyses using VariScan.
#@Stephan Hutter,Albert J. Vilella,Julio Rozas
#t2006
#cBMC Bioinformatics
#index1267569
#% 
#!
  
#*Comparison of protein interaction networks reveals species conservation and divergence.
#@Zhi Liang,Meng Xu,Maikun Teng,Liwen Niu
#t2006
#cBMC Bioinformatics
#index1267570
#% 
#!
  
#*Probe-level linear model fitting and mixture modeling results in high accuracy detection of differential gene expression.
#@Sébastien Lemieux
#t2006
#cBMC Bioinformatics
#index1267571
#% 
#!
  
#*Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost.
#@Shinsuke Yamada,Osamu Gotoh,Hayato Yamana
#t2006
#cBMC Bioinformatics
#index1267572
#% 
#!
  
#*Effect of various normalization methods on Applied Biosystems expression array system data.
#@Catalin C. Barbacioru,Yulei Wang,Roger D. Canales,Yongming A. Sun,David N. Keys,Frances Chan,Karen A. Poulter,Raymond R. Samaha
#t2006
#cBMC Bioinformatics
#index1267573
#% 
#!
  
#*Epigenetic acquisition of inducibility of type III cytotoxicity in .
#@Didier Filopon,Annabelle Mérieau,Gilles Bernot,Jean-Paul Comet,Rozenne LeBerre,Benoit Guery,Benoit Polack,Janine Guespin-Michel
#t2006
#cBMC Bioinformatics
#index1267574
#% 
#!
  
#*Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes.
#@Susmita Datta,Somnath Datta
#t2006
#cBMC Bioinformatics
#index1267575
#% 
#!
  
#*Multivariate curve resolution of time course microarray data.
#@Peter D. Wentzell,Tobias K. Karakach,Sushmita Roy,M. Juanita Martinez,Christopher P. Allen,Margaret Werner-Washburne
#t2006
#cBMC Bioinformatics
#index1267576
#% 
#!
  
#*Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks.
#@Sok June Oh,Je-Gun Joung,Jeong Ho Chang,Byoung-Tak Zhang
#t2006
#cBMC Bioinformatics
#index1267577
#% 
#!
  
#*Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints.
#@Robin D. Dowell,Sean R. Eddy
#t2006
#cBMC Bioinformatics
#index1267578
#% 
#!
  
#*Using local gene expression similarities to discover regulatory binding site modules.
#@Bartek Wilczynski,Torgeir R. Hvidsten,Andriy Kryshtafovych,Jerzy Tiuryn,Henryk Jan Komorowski,Krzysztof Fidelis
#t2006
#cBMC Bioinformatics
#index1267579
#% 
#!
  
#*A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
#@Tim F. Rayner,Philippe Rocca-Serra,Paul T. Spellman,Helen C. Causton,Anna Farne,Ele Holloway,Rafael A. Irizarry,Junmin Liu,Donald Maier,Michael Miller,Kjell Petersen,John Quackenbush,Gavin Sherlock,Christian J. Stoeckert Jr.,Joseph White,Patricia L. Whetzel,Farrell Wymore,Helen E. Parkinson,Ugis Sarkans,Catherine A. Ball,Alvis Brazma
#t2006
#cBMC Bioinformatics
#index1267580
#% 
#!
  
#*Demonstration of two novel methods for predicting functional siRNA efficiency.
#@Peilin Jia,Tieliu Shi,Yu-Dong Cai,Yixue Li
#t2006
#cBMC Bioinformatics
#index1267581
#% 
#!
  
#*Evaluation of microarray data normalization procedures using spike-in experiments.
#@Patrik Rydén,Henrik Andersson,Mattias Landfors,Linda Näslund,Blanka Hartmanová,Laila Noppa,Anders Sjöstedt
#t2006
#cBMC Bioinformatics
#index1267582
#% 
#!
  
#*A graph-search framework for associating gene identifiers with documents.
#@William W. Cohen,Einat Minkov
#t2006
#cBMC Bioinformatics
#index1267583
#% 
#!
  
#*Time scale and dimension analysis of a budding yeast cell cycle model.
#@Anna Lovrics,Attila Csikasz-Nagy,István Gy Zsély,Judit Zádor,Tamás Turányi,Béla Novák
#t2006
#cBMC Bioinformatics
#index1267584
#% 
#!
  
#*Connectivity independent protein-structure alignment: a hierarchical approach.
#@Björn Kolbeck,Patrick May,Tobias Schmidt-Goenner,Thomas Steinke,Ernst-Walter Knapp
#t2006
#cBMC Bioinformatics
#index1267585
#% 
#!
  
#*Array2BIO: from microarray expression data to functional annotation of co-regulated genes.
#@Gabriela G. Loots,Patrick S. G. Chain,Shalini Mabery,Amy Rasley,Emilio Garcia,Ivan Ovcharenko
#t2006
#cBMC Bioinformatics
#index1267586
#% 
#!
  
#*On the statistical assessment of classifiers using DNA microarray data.
#@Nicola Ancona,Rosalia Maglietta,Ada Piepoli,Annarita D'Addabbo,R. Cotugno,M. Savino,Sabino Liuni,Massimo Carella,Graziano Pesole,Francesco Perri
#t2006
#cBMC Bioinformatics
#index1267587
#% 
#!
  
#*Improving the specificity of high-throughput ortholog prediction.
#@Debra L. Fulton,Yvonne Y. Li,Matthew R. Laird,Benjamin G. S. Horsman,Fiona M. Roche,Fiona S. L. Brinkman
#t2006
#cBMC Bioinformatics
#index1267588
#% 
#!
  
#*Modelling the network of cell cycle transcription factors in the yeast .
#@Shawn Cokus,Sherri Rose,David Haynor,Niels Grønbech-Jensen,Matteo Pellegrini
#t2006
#cBMC Bioinformatics
#index1267589
#% 
#!
  
#*Cluster analysis for DNA methylation profiles having a detection threshold.
#@Paul Marjoram,Jing Chang,Peter W. Laird,Kimberly D. Siegmund
#t2006
#cBMC Bioinformatics
#index1267590
#% 
#!
  
#*ProFAT: a web-based tool for the functional annotation of protein sequences.
#@Charles Richard Bradshaw,Vineeth Surendranath,Bianca Habermann
#t2006
#cBMC Bioinformatics
#index1267591
#% 
#!
  
#*Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives.
#@Petras J. Kundrotas,Emil Alexov
#t2006
#cBMC Bioinformatics
#index1267592
#% 
#!
  
#*A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics.
#@I. Emrah Nikerel,Wouter A. van Winden,Walter M. van Gulik,Joseph J. Heijnen
#t2006
#cBMC Bioinformatics
#index1267593
#% 
#!
  
#*- application for functional annotation and statistical hypothesis testing.
#@Vidar Beisvag,Frode K. R. Jünge,Hallgeir Bergum,Lars Jølsum,Stian Lydersen,Clara-Cecilie Günther,Heri Ramampiaro,Mette Langaas,Arne K. Sandvik,Astrid Lægreid
#t2006
#cBMC Bioinformatics
#index1267594
#% 
#!
  
#*Tools for integrated sequence-structure analysis with UCSF Chimera.
#@Elaine C. Meng,Eric F. Pettersen,Gregory S. Couch,Conrad C. Huang,Thomas E. Ferrin
#t2006
#cBMC Bioinformatics
#index1267595
#% 
#!
  
#*A model-based approach to selection of tag SNPs.
#@Pierre Nicolas,Fengzhu Sun,Lei M. Li
#t2006
#cBMC Bioinformatics
#index1267596
#% 
#!
  
#*Analysis of promoter regions of co-expressed genes identified by microarray analysis.
#@Srinivas Veerla,Mattias Höglund
#t2006
#cBMC Bioinformatics
#index1267597
#% 
#!
  
#*An accurate and interpretable model for siRNA efficacy prediction.
#@Jean-Philippe Vert,Nicolas Foveau,Christian Lajaunie,Yves Vandenbrouck
#t2006
#cBMC Bioinformatics
#index1267598
#% 
#!
  
#*Bounded search for de novo identification of degenerate cis-regulatory elements.
#@Jonathan M. Carlson,Arijit Chakravarty,Radhika S. Khetani,Robert H. Gross
#t2006
#cBMC Bioinformatics
#index1267599
#% 
#!
  
#*New directions in biomedical text annotation: definitions, guidelines and corpus construction.
#@W. John Wilbur,Andrey Rzhetsky,Hagit Shatkay
#t2006
#cBMC Bioinformatics
#index1267600
#% 
#!
  
#*Testing statistical significance scores of sequence comparison methods with structure similarity.
#@Tim Hulsen,Jacob de Vlieg,Jack A. M. Leunissen,Peter M. A. Groenen
#t2006
#cBMC Bioinformatics
#index1267601
#% 
#!
  
#*A hierarchical Naïve Bayes Model for handling sample heterogeneity in classification problems: an application to tissue microarrays.
#@Francesca Demichelis,Paolo Magni,Paolo Piergiorgi,Mark A. Rubin,Riccardo Bellazzi
#t2006
#cBMC Bioinformatics
#index1267602
#% 
#!
  
#*Accelerating the reconstruction of genome-scale metabolic networks.
#@Richard A. Notebaart,Frank H. J. van Enckevort,Christof Francke,Roland J. Siezen,Bas Teusink
#t2006
#cBMC Bioinformatics
#index1267603
#% 
#!
  
#*CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes.
#@Ikuo Uchiyama,Toshio Higuchi,Ichizo Kobayashi
#t2006
#cBMC Bioinformatics
#index1267604
#% 
#!
  
#*On the persistence of supplementary resources in biomedical publications.
#@Nicholas R. Anderson,Peter Tarczy-Hornoch,Roger Eugene Bumgarner
#t2006
#cBMC Bioinformatics
#index1267605
#% 
#!
  
#*Quaternary structure predictions of transmembrane proteins starting from the monomer: a docking-based approach.
#@D. Casciari,Michele Seeber,Francesca Fanelli
#t2006
#cBMC Bioinformatics
#index1267606
#% 
#!
  
#*Phylogeny based discovery of regulatory elements.
#@Jason Gertz,Justin C. Fay,Barak A. Cohen
#t2006
#cBMC Bioinformatics
#index1267607
#% 
#!
  
#*NBA-Palm: prediction of palmitoylation site implemented in Naïve Bayes algorithm.
#@Yu Xue,Hu Chen,Changjiang Jin,Zhirong Sun,Xuebiao Yao
#t2006
#cBMC Bioinformatics
#index1267608
#% 
#!
  
#*EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences.
#@Jianjun Hu,Yifeng D. Yang,Daisuke Kihara
#t2006
#cBMC Bioinformatics
#index1267609
#% 
#!
  
#*PubFocus: semantic MEDLINE/PubMed citations analytics through integration of controlled biomedical dictionaries and ranking algorithm.
#@Maksim V. Plikus,Zina Zhang,Cheng-Ming Chuong
#t2006
#cBMC Bioinformatics
#index1267610
#% 
#!
  
#*MICA: desktop software for comprehensive searching of DNA databases.
#@William A. Stokes,Benjamin S. Glick
#t2006
#cBMC Bioinformatics
#index1267611
#% 
#!
  
#*Empirical array quality weights in the analysis of microarray data.
#@Matthew E. Ritchie,Dileepa S. Diyagama,Jody Neilson,Ryan van Laar,Alexander Dobrovic,Andrew J. Holloway,Gordon K. Smyth
#t2006
#cBMC Bioinformatics
#index1267612
#% 
#!
  
#*A literature-based similarity metric for biological processes.
#@Monica Chagoyen,Pedro Carmona-Saez,Concha Gil,José María Carazo,Alberto D. Pascual-Montano
#t2006
#cBMC Bioinformatics
#index1267613
#% 
#!
  
#*Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle.
#@Wei-Sheng Wu,Wen-Hsiung Li,Bor-Sen Chen
#t2006
#cBMC Bioinformatics
#index1267614
#% 
#!
  
#*Predicting the effect of missense mutations on protein function: analysis with Bayesian networks.
#@Chris J. Needham,James R. Bradford,Andrew J. Bulpitt,Matthew A. Care,David R. Westhead
#t2006
#cBMC Bioinformatics
#index1267615
#% 
#!
  
#*Dynamic variable selection in SNP genotype autocalling from APEX microarray data.
#@Mohua Podder,William J. Welch,Ruben H. Zamar,Scott J. Tebbutt
#t2006
#cBMC Bioinformatics
#index1267616
#% 
#!
  
#*Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease.
#@Marco Masseroli,Halil Kilicoglu,François-Michel Lang,Thomas C. Rindflesch
#t2006
#cBMC Bioinformatics
#index1267617
#% 
#!
  
#*A method for rapid similarity analysis of RNA secondary structures.
#@Na Liu,Tianming Wang
#t2006
#cBMC Bioinformatics
#index1267618
#% 
#!
  
#*Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences.
#@Christophe Dessimoz,Manuel Gil,Adrian Schneider,Gaston H. Gonnet
#t2006
#cBMC Bioinformatics
#index1267619
#% 
#!
  
#*: a distance-based algorithm for CpG-island detection.
#@Michael Hackenberg,Christopher Previti,Pedro Luis Luque-Escamilla,Pedro Carpena,José Martínez-Aroza,José L. Oliver
#t2006
#cBMC Bioinformatics
#index1267620
#% 
#!
  
#*Predicting transcription factor binding sites using local over-representation and comparative genomics.
#@Matthieu Defrance,Hélène Touzet
#t2006
#cBMC Bioinformatics
#index1267621
#% 
#!
  
#*Association algorithm to mine the rules that govern enzyme definition and to classify protein sequences.
#@Shih-Hau Chiu,Chien-Chi Chen,Gwo-Fang Yuan,Thy-Hou Lin
#t2006
#cBMC Bioinformatics
#index1267622
#% 
#!
  
#*Browsing repeats in genomes: Pygram and an application to non-coding region analysis.
#@Patrick Durand,Frédéric Mahé,Anne-Sophie Valin,Jacques Nicolas
#t2006
#cBMC Bioinformatics
#index1267623
#% 
#!
  
#*Agile methods in biomedical software development: a multi-site experience report.
#@David W. Kane,Moses M. Hohman,Ethan G. Cerami,Michael W. McCormick,Karl F. Kuhlmman,Jeff A. Byrd
#t2006
#cBMC Bioinformatics
#index1267624
#% 
#!
  
#*Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments.
#@Srinka Ghosh,Heather A. Hirsch,Edward A. Sekinger,Kevin Struhl,Thomas R. Gingeras
#t2006
#cBMC Bioinformatics
#index1267625
#% 
#!
  
#*Spatial normalization of array-CGH data.
#@Pierre Neuvial,Philippe Hupé,Isabel Brito,Stéphane Liva,Elodie Manié,Caroline Brennetot,François Radvanyi,Alain Aurias,Emmanuel Barillot
#t2006
#cBMC Bioinformatics
#index1267626
#% 
#!
  
#*Web-based analysis of the mouse transcriptome using Genevestigator.
#@Oliver Laule,Matthias Hirsch-Hoffmann,Tomas Hruz,Wilhelm Gruissem,Philip Zimmermann
#t2006
#cBMC Bioinformatics
#index1267627
#% 
#!
  
#*Comparative assessment of performance and genome dependence among phylogenetic profiling methods.
#@Evan S. Snitkin,Adam M. Gustafson,Joseph C. Mellor,Jie Wu,Charles DeLisi
#t2006
#cBMC Bioinformatics
#index1267628
#% 
#!
  
#*Improving the quality of protein structure models by selecting from alignment alternatives.
#@Ingolf Sommer,Stefano Toppo,Oliver Sander,Thomas Lengauer,Silvio C. E. Tosatto
#t2006
#cBMC Bioinformatics
#index1267629
#% 
#!
  
#*Genome wide prediction of protein function via a generic knowledge discovery approach based on evidence integration.
#@Jianghui Xiong,Simon Rayner,Kunyi Luo,Yinghui Li,Shanguang Chen
#t2006
#cBMC Bioinformatics
#index1267630
#% 
#!
  
#*RiboSubstrates: a web application addressing the cleavage specificities of ribozymes in designated genomes.
#@Jean-François Lucier,Lucien Junior Bergeron,Francis P. Brière,Rodney Ouellette,Sherif Abou Elela,Jean-Pierre Perreault
#t2006
#cBMC Bioinformatics
#index1267631
#% 
#!
  
#*PROMPT: a protein mapping and comparison tool.
#@Thorsten Schmidt,Dmitrij Frishman
#t2006
#cBMC Bioinformatics
#index1267632
#% 
#!
  
#*Exhaustive assignment of compositional bias reveals universally prevalent biased regions: analysis of functional associations in human and .
#@Paul M. Harrison
#t2006
#cBMC Bioinformatics
#index1267633
#% 
#!
  
#*GOLEM: an interactive graph-based gene-ontology navigation and analysis tool.
#@Rachel S. G. Sealfon,Matthew A. Hibbs,Curtis Huttenhower,Chad L. Myers,Olga G. Troyanskaya
#t2006
#cBMC Bioinformatics
#index1267634
#% 
#!
  
#*4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing.
#@Philipp N. Seibel,Tobias Müller,Thomas Dandekar,Jörg Schultz,Matthias Wolf
#t2006
#cBMC Bioinformatics
#index1267635
#% 
#!
  
#*Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps.
#@Tomas Ohlson,Varun Aggarwal,Arne Elofsson,Robert M. MacCallum
#t2006
#cBMC Bioinformatics
#index1267636
#% 
#!
  
#*Optimized mixed Markov models for motif identification.
#@Weichun Huang,David M. Umbach,Uwe Ohler,Leping Li
#t2006
#cBMC Bioinformatics
#index1267637
#% 
#!
  
#*Impact of RNA structure on the prediction of donor and acceptor splice sites.
#@Sayed-Amir Marashi,Changiz Eslahchi,Hamid Pezeshk,Mehdi Sadeghi
#t2006
#cBMC Bioinformatics
#index1267638
#% 
#!
  
#*Improving missing value imputation of microarray data by using spot quality weights.
#@Peter Johansson,Jari Häkkinen
#t2006
#cBMC Bioinformatics
#index1267639
#% 
#!
  
#*A combined approach to data mining of textual and structured data to identify cancer-related targets.
#@Pavel Pospisil,Lakshmanan K. Iyer,S. James Adelstein,Amin I. Kassis
#t2006
#cBMC Bioinformatics
#index1267640
#% 
#!
  
#*Meta-All: a system for managing metabolic pathway information.
#@Stephan Weise,Ivo Grosse,Christian Klukas,Dirk Koschützki,Uwe Scholz,Falk Schreiber,Björn H. Junker
#t2006
#cBMC Bioinformatics
#index1267641
#% 
#!
  
#*iHAP - integrated haplotype analysis pipeline for characterizing the haplotype structure of genes.
#@Chun Meng Song,Boon Huat Yeo,Erwin Tantoso,Yuchen Yang,Yun Ping Lim,Kuo-Bin Li,Gunaretnam Rajagopal
#t2006
#cBMC Bioinformatics
#index1267642
#% 
#!
  
#*Prediction of a key role of motifs binding E2F and NR2F in down-regulation of numerous genes during the development of the mouse hippocampus.
#@Michal Dabrowski,Stein Aerts,Bozena Kaminska
#t2006
#cBMC Bioinformatics
#index1267643
#% 
#!
  
#*Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data.
#@Jonathan G. Lees,Andrew J. Miles,Robert W. Janes,B. A. Wallace
#t2006
#cBMC Bioinformatics
#index1267644
#% 
#!
  
#*Bacterial genotyping by 16S rRNA mass cataloging.
#@George W. Jackson,Roger J. McNichols,George E. Fox,Richard C. Willson
#t2006
#cBMC Bioinformatics
#index1267645
#% 
#!
  
#*Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements.
#@Kannan Tharakaraman,Leonardo Mariño-Ramírez,Sergey Sheetlin,David Landsman,John L. Spouge
#t2006
#cBMC Bioinformatics
#index1267646
#% 
#!
  
#*Computational expression deconvolution in a complex mammalian organ.
#@Min Wang,Stephen R. Master,Lewis A. Chodosh
#t2006
#cBMC Bioinformatics
#index1267647
#% 
#!
  
#*Noise-injected neural networks show promise for use on small-sample expression data.
#@Jianping Hua,James Lowey,Zixiang Xiong,Edward R. Dougherty
#t2006
#cBMC Bioinformatics
#index1267648
#% 
#!
  
#*Automatic generation of gene finders for eukaryotic species.
#@Kasper Munch,Anders Krogh
#t2006
#cBMC Bioinformatics
#index1267649
#% 
#!
  
#*Development of an open source laboratory information management system for 2-D gel electrophoresis-based proteomics workflow.
#@Hiraku Morisawa,Mikako Hirota,Tosifusa Toda
#t2006
#cBMC Bioinformatics
#index1267650
#% 
#!
  
#*A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database.
#@Simon Katz,Rafael A. Irizarry,Xue Lin,Mark Tripputi,Mark W. Porter
#t2006
#cBMC Bioinformatics
#index1267651
#% 
#!
  
#*GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima.
#@Kazuhito Shida
#t2006
#cBMC Bioinformatics
#index1267652
#% 
#!
  
#*PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens.
#@Sreedevi Thiyagarajan,Miloslav Karhanek,Michael Akhras,Ronald W. Davis,Nader Pourmand
#t2006
#cBMC Bioinformatics
#index1267653
#% 
#!
  
#*High throughput profile-profile based fold recognition for the entire human proteome.
#@Liam J. McGuffin,Richard T. Smith,Kevin Bryson,Søren-Aksel Sørensen,David T. Jones
#t2006
#cBMC Bioinformatics
#index1267654
#% 
#!
  
#*Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis.
#@Andrew J. Holloway,Alicia Oshlack,Dileepa S. Diyagama,David D. L. Bowtell,Gordon K. Smyth
#t2006
#cBMC Bioinformatics
#index1267655
#% 
#!
  
#*Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments.
#@Daniel A. Pollard,Alan M. Moses,Venky N. Iyer,Michael B. Eisen
#t2006
#cBMC Bioinformatics
#index1267656
#% 
#!
  
#*Simulation of microarray data with realistic characteristics.
#@Matti Nykter,Tommi Aho,Miika Ahdesmäki,Pekka Ruusuvuori,Antti Lehmussola,Olli Yli-Harja
#t2006
#cBMC Bioinformatics
#index1267657
#% 
#!
  
#*UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context.
#@Catherine Lozupone,Micah Hamady,Rob Knight
#t2006
#cBMC Bioinformatics
#index1267658
#% 
#!
  
#*A machine learning strategy to identify candidate binding sites in human protein-coding sequence.
#@Thomas Down,Bernard Leong,Tim J. P. Hubbard
#t2006
#cBMC Bioinformatics
#index1267659
#% 
#!
  
#*MannDB - A microbial database of automated protein sequence analyses and evidence integration for protein characterization.
#@Carol L. Ecale Zhou,Marisa Lam,Jason Smith,Adam Zemla,Matthew D. Dyer,Thomas A. Kuczmarski,Elizabeth A. Vitalis,Thomas R. Slezak
#t2006
#cBMC Bioinformatics
#index1267660
#% 
#!
  
#*Prediction of amphipathic in-plane membrane anchors in monotopic proteins using a SVM classifier.
#@Nicolas Sapay,Yann Guermeur,Gilbert Deléage
#t2006
#cBMC Bioinformatics
#index1267661
#% 
#!
  
#*Detection of prokaryotic promoters from the genomic distribution of hexanucleotide pairs.
#@Pierre-Étienne Jacques,Sébastien Rodrigue,Luc Gaudreau,Jean Goulet,Ryszard Brzezinski
#t2006
#cBMC Bioinformatics
#index1267662
#% 
#!
  
#*Cluster analysis of protein array results via similarity of Gene Ontology annotation.
#@Cheryl Wolting,C. Jane McGlade,David Tritchler
#t2006
#cBMC Bioinformatics
#index1267663
#% 
#!
  
#*identification of putative promoter motifs of White Spot Syndrome Virus.
#@Hendrik Marks,Xin-Ying Ren,Hans Sandbrink,Mariëlle C. W. van Hulten,Just M. Vlak
#t2006
#cBMC Bioinformatics
#index1267664
#% 
#!
  
#*Predicting DNA-binding sites of proteins from amino acid sequence.
#@Changhui Yan,Michael Terribilini,Feihong Wu,Robert L. Jernigan,Drena Dobbs,Vasant Honavar
#t2006
#cBMC Bioinformatics
#index1267665
#% 
#!
  
#*inGeno - an integrated genome and ortholog viewer for improved genome to genome comparisons.
#@Chunguang Liang,Thomas Dandekar
#t2006
#cBMC Bioinformatics
#index1267666
#% 
#!
  
#*Identification of QTLs controlling gene expression networks defined .
#@Daniel J. Kliebenstein,Marilyn A. L. West,Hans van Leeuwen,Olivier Loudet,R. W. Doerge,Dina A. St Clair
#t2006
#cBMC Bioinformatics
#index1267667
#% 
#!
  
#*A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors.
#@Andreas Keller,Nicole Ludwig,Nicole Comtesse,Andreas Hildebrandt,Eckart Meese,Hans-Peter Lenhof
#t2006
#cBMC Bioinformatics
#index1267668
#% 
#!
  
#*Laboratory Information Management Software for genotyping workflows: applications in high throughput crop genotyping.
#@B. Jayashree,Praveen T. Reddy,Y. Leeladevi,Jonathan H. Crouch,V. Mahalakshmi,Hutokshi K. Buhariwalla,K. E. Eshwar,Emma Mace,Rolf Folksterma,S. Senthilvel,Rajeev K. Varshney,K. Seetha,R. Rajalakshmi,V. P. Prasanth,Subhash Chandra,L. Swarupa,P. SriKalyani,David A. Hoisington
#t2006
#cBMC Bioinformatics
#index1267669
#% 
#!
  
#*A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls.
#@Mark K. Titulaer,Ivar Siccama,Lennard J. Dekker,Angelique L. C. T. van Rijswijk,Ron M. A. Heeren,Peter A. E. Sillevis Smitt,Theo M. Luider
#t2006
#cBMC Bioinformatics
#index1267670
#% 
#!
  
#*Incorporating background frequency improves entropy-based residue conservation measures.
#@Kai Wang,Ram Samudrala
#t2006
#cBMC Bioinformatics
#index1267671
#% 
#!
  
#*PSMIX: an R package for population structure inference via maximum likelihood method.
#@Baolin Wu,Nianjun Liu,Hongyu Zhao
#t2006
#cBMC Bioinformatics
#index1267672
#% 
#!
  
#*Fast index based algorithms and software for matching position specific scoring matrices.
#@Michael Beckstette,Robert Homann,Robert Giegerich,Stefan Kurtz
#t2006
#cBMC Bioinformatics
#index1267673
#% 
#!
  
#*Genepi: a blackboard framework for genome annotation.
#@Stéphane Descorps-Declère,Danielle Ziébelin,François Rechenmann,Alain Viari
#t2006
#cBMC Bioinformatics
#index1267674
#% 
#!
  
#*Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction.
#@Zhengdeng Lei,Yang Dai
#t2006
#cBMC Bioinformatics
#index1267675
#% 
#!
  
#*cPath: open source software for collecting, storing, and querying biological pathways.
#@Ethan G. Cerami,Gary D. Bader,Benjamin E. Gross,Chris Sander
#t2006
#cBMC Bioinformatics
#index1267676
#% 
#!
  
#*M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species.
#@Todd J. Treangen,Xavier Messeguer
#t2006
#cBMC Bioinformatics
#index1267677
#% 
#!
  
#*Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it.
#@Kevin L. Garwood,Christopher Garwood,Cornelia Hedeler,Tony Griffiths,Neil Swainston,Stephen G. Oliver,Norman W. Paton
#t2006
#cBMC Bioinformatics
#index1267678
#% 
#!
  
#*Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins.
#@Davide Baù,Alberto J. M. Martin,Catherine Mooney,Alessandro Vullo,Ian Walsh,Gianluca Pollastri
#t2006
#cBMC Bioinformatics
#index1267679
#% 
#!
  
#*Antisense DNA parameters derived from next-nearest-neighbor analysis of experimental data.
#@Donald M. Gray,Carla W. Gray,Byong-Hoon Yoo,Tzu-Fang Lou
#t2010
#cBMC Bioinformatics
#index2850292
#% 
#!
  
#*Stability analysis of the GAL regulatory network in and .
#@Vishwesh V. Kulkarni,Venkatesh Kareenhalli,Pushkar Malakar,Lucy Y. Pao,Michael G. Safonov,Ganesh A. Viswanathan
#t2010
#cBMC Bioinformatics
#index2850605
#% 
#!
  
#*BIOADI: a machine learning approach to identifying abbreviations and definitions in biological literature.
#@Cheng-Ju Kuo,Maurice H. T. Ling,Kuan-Ting Lin,Chun-Nan Hsu
#t2009
#cBMC Bioinformatics
#index2850112
#% 
#!
  
#*Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design.
#@Andrew J. Bordner
#t2010
#cBMC Bioinformatics
#index2850188
#% 
#!
  
#*Comparison of scores for bimodality of gene expression distributions and genome-wide evaluation of the prognostic relevance of high-scoring genes.
#@Birte Hellwig,Jan G. Hengstler,Marcus Schmidt,Mathias C. Gehrmann,Wiebke Schormann,Jörg Rahnenführer
#t2010
#cBMC Bioinformatics
#index2850174
#% 
#!
  
#*Accessing the SEED genome databases via Web services API: tools for programmers.
#@Terry Disz,Sajia Akhter,Daniel Cuevas,Robert Olson,Ross A. Overbeek,Veronika Vonstein,Rick Stevens,Robert A. Edwards
#t2010
#cBMC Bioinformatics
#index2850270
#% 
#!
  
#*Semantic web data warehousing for caGrid.
#@James P. McCusker,Joshua A. Phillips,Alejandra González Beltrán,Anthony Finkelstein,Michael Krauthammer
#t2009
#cBMC Bioinformatics
#index2850077
#% 
#!
  
#*A fast and robust hepatocyte quantification algorithm including vein processing.
#@Tetyana Ivanovska,Andrea Schenk,André Homeyer,Meihong Deng,Uta Dahmen,Olaf Dirsch,Horst K. Hahn,Lars Linsen
#t2010
#cBMC Bioinformatics
#index2850501
#% 
#!
  
#*Biodiversity Informatics: the emergence of a field.
#@Indra Neil Sarkar
#t2009
#cBMC Bioinformatics
#index2850134
#% 
#!
  
#*Analysis and modelling of motility of cell populations with MotoCell.
#@Concita Cantarella,Leandra Sepe,Francesca Fioretti,Maria Carla Ferrari,Giovanni Paolella
#t2009
#cBMC Bioinformatics
#index2850091
#% 
#!
  
#*Using jackknife to assess the quality of gene order phylogenies.
#@Jian Shi,Yiwei Zhang,Haiwei Luo,Jijun Tang
#t2010
#cBMC Bioinformatics
#index2850202
#% 
#!
  
#*Graphle: Interactive exploration of large, dense graphs.
#@Curtis Huttenhower,Sajid O. Mehmood,Olga G. Troyanskaya
#t2009
#cBMC Bioinformatics
#index2850020
#% 
#!
  
#*Applying unmixing to gene expression data for tumor phylogeny inference.
#@Russell Schwartz,Stanley Shackney
#t2010
#cBMC Bioinformatics
#index2850216
#% 
#!
  
#*Functionally informative tag SNP selection using a pareto-optimal approach: playing the game of life.
#@Phil Hyoun Lee,Jae-Yoon Jung,Hagit Shatkay
#t2009
#cBMC Bioinformatics
#index2850105
#% 
#!
  
#*Word add-in for ontology recognition: semantic enrichment of scientific literature.
#@J. Lynn Fink,Pablo Fernicola,Rahul Chandran,Savas Parastatidis,Alex Wade,Oscar Naim,Greg B. Quinn,Philip E. Bourne
#t2010
#cBMC Bioinformatics
#index2850426
#% 
#!
  
#*Fine-tuning structural RNA alignments in the twilight zone.
#@Andreas Bremges,Stefanie Schirmer,Robert Giegerich
#t2010
#cBMC Bioinformatics
#index2850209
#% 
#!
  
#*PAPAyA: a platform for breast cancer biomarker signature discovery, evaluation and assessment.
#@Angel Janevski,Sitharthan Kamalakaran,Nilanjana Banerjee,Vinay Varadan,Nevenka Dimitrova
#t2009
#cBMC Bioinformatics
#index2850098
#% 
#!
  
#*Super-sparse principal component analyses for high-throughput genomic data.
#@Donghwan Lee,Woojoo Lee,Youngjo Lee,Yudi Pawitan
#t2010
#cBMC Bioinformatics
#index2850167
#% 
#!
  
#*ReseqChip: Automated integration of multiple local context probe data from the MitoChip array in mitochondrial DNA sequence assembly.
#@Marian Thieme,Claudio Lottaz,Harald Niederstätter,Walther Parson,Rainer Spang,Peter J. Oefner
#t2009
#cBMC Bioinformatics
#index2850027
#% 
#!
  
#*Survival prediction from clinico-genomic models - a comparative study.
#@Hege M. Bøvelstad,Ståle Nygård,Ørnulf Borgan
#t2009
#cBMC Bioinformatics
#index2849981
#% 
#!
  
#*Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data.
#@Benedikt Zacher,Pei Fen Kuan,Achim Tresch
#t2010
#cBMC Bioinformatics
#index2850410
#% 
#!
  
#*BayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factors.
#@Junbai Wang,Morigen
#t2009
#cBMC Bioinformatics
#index2849878
#% 
#!
  
#*Comparison of PGHbinding site in prostaglandin synthases.
#@Padmapriya Paragi-Vedanthi,Mukesh Doble
#t2010
#cBMC Bioinformatics
#index2850528
#% 
#!
  
#*Survival Online: a web-based service for the analysis of correlations between gene expression and clinical and follow-up data.
#@Luca Corradi,Valentina Mirisola,Ivan Porro,Livia Torterolo,Marco Fato,Paolo Romano,Ulrich Pfeffer
#t2009
#cBMC Bioinformatics
#index2850138
#% 
#!
  
#*Selected proceedings of the 2009 Summit on Translational Bioinformatics.
#@Yves A. Lussier,Indra Neil Sarkar
#t2009
#cBMC Bioinformatics
#index2850145
#% 
#!
  
#*PRAT: SVM-based Protein Residue Annotation Toolkit.
#@Huzefa Rangwala,Christopher Kauffman,George Karypis
#t2009
#cBMC Bioinformatics
#index2849864
#% 
#!
  
#*Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso.
#@Can Yang,Xiang Wan,Qiang Yang,Hong Xue,Weichuan Yu
#t2010
#cBMC Bioinformatics
#index2850537
#% 
#!
  
#*FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods.
#@Stephanie Zierke,Jason D. Bakos
#t2010
#cBMC Bioinformatics
#index2850261
#% 
#!
  
#*The B6 database: a tool for the description and classification of vitamin B6-dependent enzymatic activities and of the corresponding protein families.
#@Riccardo Percudani,Alessio Peracchi
#t2009
#cBMC Bioinformatics
#index2849995
#% 
#!
  
#*Different effects of the probe summarization algorithms PLIER and RMA on high-level analysis of Affymetrix exon arrays.
#@Yi Qu,Fei He,Yuchen Chen
#t2010
#cBMC Bioinformatics
#index2850391
#% 
#!
  
#*Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing embryo.
#@Zafer Aydin,John I. Murray,Robert H. Waterston,William Stafford Noble
#t2010
#cBMC Bioinformatics
#index2850371
#% 
#!
  
#*The ancient history of the structure of ribonuclease P and the early origins of Archaea.
#@Feng-Jie Sun,Gustavo Caetano-Anollés
#t2010
#cBMC Bioinformatics
#index2850252
#% 
#!
  
#*DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices.
#@Isabelle da Piedade,Man-Hung Eric Tang,Olivier Elemento
#t2009
#cBMC Bioinformatics
#index2849853
#% 
#!
  
#*Computational modeling with forward and reverse engineering links signaling network and genomic regulatory responses: NF-kappaB signaling-induced gene expression responses in inflammation.
#@Shih Chi Peng,David Shan-Hill Wong,Kai Che Tung,Yan Yu Chen,Chun Cheih Chao,Chien Hua Peng,Yung Jen Chuang,Chuan Yi Tang
#t2010
#cBMC Bioinformatics
#index2850195
#% 
#!
  
#*A method for validation for clustering of phenotypic gene knockdown profiles using protein-protein interactions information.
#@Nikolay Samusik,Yannis Kalaidzidis,Marino Zerial
#t2009
#cBMC Bioinformatics
#index2850120
#% 
#!
  
#*Next generation transcriptomes for next generation genomes using .
#@Alexie Papanicolaou,Remo Stierli,Richard H. ffrench-Constant,David G. Heckel
#t2009
#cBMC Bioinformatics
#index2849966
#% 
#!
  
#*GATExplorer: Genomic and Transcriptomic Explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.
#@Alberto Risueño,Celia Fontanillo,Marcel E. Dinger,Javier De Las Rivas
#t2010
#cBMC Bioinformatics
#index2850289
#% 
#!
  
#*A temporal precedence based clustering method for gene expression microarray data.
#@Ritesh Krishna,Chang-Tsun Li,Vicky Buchanan-Wollaston
#t2010
#cBMC Bioinformatics
#index2850355
#% 
#!
  
#*The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays.
#@Yevhen Vainshtein,Mayka Sanchez,Alvis Brazma,Matthias W. Hentze,Thomas Dandekar,Martina U. Muckenthaler
#t2010
#cBMC Bioinformatics
#index2850419
#% 
#!
  
#*Molecular dynamics simulation studies and site directed mutagenesis of avian beta-defensin Apl_AvBD2.
#@Soja Saghar Soman,Krishnankutty Chandrika Sivakumar,Easwaran Sreekumar
#t2010
#cBMC Bioinformatics
#index2850530
#% 
#!
  
#*Mining protein loops using a structural alphabet and statistical exceptionality.
#@Leslie Regad,Juliette Martin,Grégory Nuel,Anne-Claude Camproux
#t2010
#cBMC Bioinformatics
#index2850181
#% 
#!
  
#*Learning biological network using mutual information and conditional independence.
#@Dong-Chul Kim,Xiaoyu Wang,Chin-Rang Yang,Jean Gao
#t2010
#cBMC Bioinformatics
#index2850575
#% 
#!
  
#*SOPRA: Scaffolding algorithm for paired reads via statistical optimization.
#@Adel Dayarian,Todd P. Michael,Anirvan M. Sengupta
#t2010
#cBMC Bioinformatics
#index2850465
#% 
#!
  
#*Estimating true evolutionary distances under rearrangements, duplications, and losses.
#@Yu Lin,Vaibhav Rajan,Krister M. Swenson,Bernard M. E. Moret
#t2010
#cBMC Bioinformatics
#index2850604
#% 
#!
  
#*Elucidation of functional consequences of signalling pathway interactions.
#@Adaoha E. C. Ihekwaba,Phuong T. Nguyen,Corrado Priami
#t2009
#cBMC Bioinformatics
#index2850002
#% 
#!
  
#*RRW: repeated random walks on genome-scale protein networks for local cluster discovery.
#@Kathy Macropol,Tolga Can,Ambuj K. Singh
#t2009
#cBMC Bioinformatics
#index2849973
#% 
#!
  
#*Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information.
#@Jagat S. Chauhan,Nitish K. Mishra,Gajendra P. S. Raghava
#t2010
#cBMC Bioinformatics
#index2850492
#% 
#!
  
#*Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data.
#@Bart H. J. van den Berg,Chamali Thanthiriwatte,Prashanti Manda,Susan M. Bridges
#t2009
#cBMC Bioinformatics
#index2850152
#% 
#!
  
#*Protein comparison at the domain architecture level.
#@Byungwook Lee,Doheon Lee
#t2009
#cBMC Bioinformatics
#index2850084
#% 
#!
  
#*TargetSpy: a supervised machine learning approach for microRNA target prediction.
#@Martin Sturm,Michael Hackenberg,David Langenberger,Dmitrij Frishman
#t2010
#cBMC Bioinformatics
#index2850363
#% 
#!
  
#*SplicerAV: a tool for mining microarray expression data for changes in RNA processing.
#@Timothy J. Robinson,Michaela A. Dinan,Mark Dewhirst,Mariano A. Garcia-Blanco,James L. Pearson
#t2010
#cBMC Bioinformatics
#index2850390
#% 
#!
  
#*CHESS (CgHExpreSS): A comprehensive analysis tool for the analysis of genomic alterations and their effects on the expression profile of the genome.
#@Mikyung Lee,Yangseok Kim
#t2009
#cBMC Bioinformatics
#index2849867
#% 
#!
  
#*Integrative analysis of gene expression and copy number alterations using canonical correlation analysis.
#@Charlotte Soneson,Henrik Lilljebjörn,Thoas Fioretos,Magnus Fontes
#t2010
#cBMC Bioinformatics
#index2850456
#% 
#!
  
#*Prediction of protein binding sites in protein structures using hidden Markov support vector machine.
#@Bin Liu,Xiaolong Wang,Lei Lin,Buzhou Tang,Qiwen Dong,Xuan Wang
#t2009
#cBMC Bioinformatics
#index2850034
#% 
#!
  
#*Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation.
#@Roberta Alfieri,Matteo Barberis,Ferdinando Chiaradonna,Daniela Gaglio,Luciano Milanesi,Marco Vanoni,Edda Klipp,Lilia Alberghina
#t2009
#cBMC Bioinformatics
#index2850106
#% 
#!
  
#*Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function.
#@Petri Törönen,Pauli J. Ojala,Pekka Marttinen,Liisa Holm
#t2009
#cBMC Bioinformatics
#index2849894
#% 
#!
  
#*Algorithms for effective querying of compound graph-based pathway databases.
#@Ugur Dogrusöz,Ahmet Cetintas,Emek Demir,Ozgun Babur
#t2009
#cBMC Bioinformatics
#index2849889
#% 
#!
  
#*Bidirectional best hit -window gene clusters.
#@Melvin Zhang,Hon Wai Leong
#t2010
#cBMC Bioinformatics
#index2850585
#% 
#!
  
#*Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism.
#@Hiroto Saigo,Masahiro Hattori,Hisashi Kashima,Koji Tsuda
#t2010
#cBMC Bioinformatics
#index2850565
#% 
#!
  
#*An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation).
#@Martin J. Aryee,José A. Gutiérrez-Pabello,Igor Kramnik,Tapabrata Maiti,John Quackenbush
#t2009
#cBMC Bioinformatics
#index2849903
#% 
#!
  
#*Modeling expression quantitative trait loci in data combining ethnic populations.
#@Ching-Lin Hsiao,Ie-Bin Lian,Ai-Ru Hsieh,Cathy S. J. Fann
#t2010
#cBMC Bioinformatics
#index2850345
#% 
#!
  
#*Enhanced protein fold recognition through a novel data integration approach.
#@Yiming Ying,Kaizhu Huang,Colin Campbell
#t2009
#cBMC Bioinformatics
#index2849908
#% 
#!
  
#*Translog, a web browser for studying the expression divergence of homologous genes.
#@Xianjun Dong,Altuna Akalin,Yogita Sharma,Boris Lenhard
#t2010
#cBMC Bioinformatics
#index2850556
#% 
#!
  
#*Sorting by reversals and block-interchanges with various weight assignments.
#@Ying Chih Lin,Chun-Yuan Lin,Chunhung Richard Lin
#t2009
#cBMC Bioinformatics
#index2850041
#% 
#!
  
#*Short clones or long clones? A simulation study on the use of paired reads in metagenomics.
#@Suparna Mitra,Max Schubach,Daniel H. Huson
#t2010
#cBMC Bioinformatics
#index2850529
#% 
#!
  
#*The curvHDR method for gating flow cytometry samples.
#@Ulrike Naumann,George Luta,Matthew P. Wand
#t2010
#cBMC Bioinformatics
#index2850397
#% 
#!
  
#*A database and API for variation, dense genotyping and resequencing data.
#@Daniel Rios,William M. McLaren,Yuan Chen,Ewan Birney,Arne Stabenau,Paul Flicek,Fiona Cunningham
#t2010
#cBMC Bioinformatics
#index2850264
#% 
#!
  
#*A scale space approach for unsupervised feature selection in mass spectra classification for ovarian cancer detection.
#@Michele Ceccarelli,Antonio d'Acierno,Angelo Facchiano
#t2009
#cBMC Bioinformatics
#index2850126
#% 
#!
  
#*Missing genes in the annotation of prokaryotic genomes.
#@Andrew S. Warren,Jeremy S. Archuleta,Wu-chun Feng,João Carlos Setubal
#t2010
#cBMC Bioinformatics
#index2850400
#% 
#!
  
#*XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services.
#@Johannes Wagener,Ola Spjuth,Egon L. Willighagen,Jarl E. S. Wikberg
#t2009
#cBMC Bioinformatics
#index2850013
#% 
#!
  
#*Magallanes: a web services discovery and automatic workflow composition tool.
#@Javier Ríos,Johan Karlsson,Oswaldo Trelles
#t2009
#cBMC Bioinformatics
#index2850014
#% 
#!
  
#*Enhancing metabolomic data analysis with Progressive Consensus Alignment of NMR Spectra (PCANS).
#@Jennifer M. Staab,Thomas M. O'Connell,Shawn M. Gomez
#t2010
#cBMC Bioinformatics
#index2850511
#% 
#!
  
#*UFFizi: a generic platform for ranking informative features.
#@Assaf Gottlieb,Roy Varshavsky,Michal Linial,David Horn
#t2010
#cBMC Bioinformatics
#index2850271
#% 
#!
  
#*A novel chemogenomics analysis of G protein-coupled receptors (GPCRs) and their ligands: a potential strategy for receptor de-orphanization.
#@Eelke van der Horst,Julio E. Peironcely,Adriaan P. IJzerman,Margot W. Beukers,Jonathan R. Lane,Herman W. T. van Vlijmen,Michael T. M. Emmerich,Yasushi Okuno,Andreas Bender
#t2010
#cBMC Bioinformatics
#index2850475
#% 
#!
  
#*Automated seeding of specialised wiki knowledgebases with BioKb.
#@Jonathan R. Manning,Ann Hedley,John J. Mullins,Donald R. Dunbar
#t2009
#cBMC Bioinformatics
#index2849916
#% 
#!
  
#*An effective approach for generating a three-Cys2His2 zinc-finger-DNA complex model by docking.
#@Chun-Chi Chou,M. Rajasekaran,Chinpan Chen
#t2010
#cBMC Bioinformatics
#index2850440
#% 
#!
  
#*RNA folding on the 3D triangular lattice.
#@Joel Gillespie,Martin Mayne,Minghui Jiang
#t2009
#cBMC Bioinformatics
#index2849930
#% 
#!
  
#*Using simple artificial intelligence methods for predicting amyloidogenesis in antibodies.
#@Maria Pamela C. David,Gisela P. Concepcion,Eduardo A. Padlan
#t2010
#cBMC Bioinformatics
#index2850466
#% 
#!
  
#*Multivariate classification of urine metabolome profiles for breast cancer diagnosis.
#@Younghoon Kim,Imhoi Koo,Byung Hwa Jung,Bong Chul Chung,Doheon Lee
#t2010
#cBMC Bioinformatics
#index2850595
#%764419
#%2360
#%1009234
#!
  
#*TransportTP: A two-phase classification approach for membrane transporter prediction and characterization.
#@Haiquan Li,Vagner A. Benedito,Michael K. Udvardi,Patrick Xuechun Zhao
#t2009
#cBMC Bioinformatics
#index2849986
#% 
#!
  
#*PathBinder - text empirics and automatic extraction of biomolecular interactions.
#@Lifeng Zhang,Daniel Berleant,Jing Ding,Tuan Cao,Eve Syrkin Wurtele
#t2009
#cBMC Bioinformatics
#index2850055
#% 
#!
  
#*Bioclipse 2: A scriptable integration platform for the life sciences.
#@Ola Spjuth,Jonathan Alvarsson,Arvid Berg,Martin Eklund,Stefan Kuhn,Carl Mäsak,Gilleain M. Torrance,Johannes Wagener,Egon L. Willighagen,Christoph Steinbeck,Jarl E. S. Wikberg
#t2009
#cBMC Bioinformatics
#index2850042
#% 
#!
  
#*CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics.
#@Xiaowu Gai,Juan C. Perin,Kevin Murphy,Ryan O'Hara,Monica D'arcy,Adam Wenocur,Hongbo M. Xie,Eric F. Rappaport,Tamim H. Shaikh,Peter S. White
#t2010
#cBMC Bioinformatics
#index2850370
#% 
#!
  
#*Identification of ATP binding residues of a protein from its primary sequence.
#@Jagat S. Chauhan,Nitish K. Mishra,Gajendra P. S. Raghava
#t2009
#cBMC Bioinformatics
#index2849850
#% 
#!
  
#*Learning to predict expression efficacy of vectors in recombinant protein production.
#@Wen-Ching Chan,Po-Huang Liang,Yan-Ping Shih,Ueng-Cheng Yang,Wen-chang Lin,Chun-Nan Hsu
#t2010
#cBMC Bioinformatics
#index2850547
#% 
#!
  
#*Classification of G-protein coupled receptors based on support vector machine with maximum relevance minimum redundancy and genetic algorithm.
#@Zhanchao Li,Xuan Zhou,Zong Dai,Xiaoyong Zou
#t2010
#cBMC Bioinformatics
#index2850411
#% 
#!
  
#*BisoGenet: a new tool for gene network building, visualization and analysis.
#@Alexander Martin,Maria Elena Ochagavia,Laya C. Rabasa,Jamilet Miranda,Jorge Fernandez-de-Cossio,Ricardo Bringas
#t2010
#cBMC Bioinformatics
#index2850377
#% 
#!
  
#*OLS Dialog: An open-source front end to the Ontology Lookup Service.
#@Harald Barsnes,Richard G. Côté,Ingvar Eidhammer,Lennart Martens
#t2010
#cBMC Bioinformatics
#index2850381
#% 
#!
  
#*EnzyMiner: automatic identification of protein level mutations and their impact on target enzymes from PubMed abstracts.
#@Süveyda Yeniterzi,Osman Ugur Sezerman
#t2009
#cBMC Bioinformatics
#index2850049
#% 
#!
  
#*Mathematical model for empirically optimizing large scale production of soluble protein domains.
#@Eisuke Chikayama,Atsushi Kurotani,Takanori Tanaka,Takashi Yabuki,Satoshi Miyazaki,Shigeyuki Yokoyama,Yutaka Kuroda
#t2010
#cBMC Bioinformatics
#index2850502
#% 
#!
  
#*Direct calibration of PICKY-designed microarrays.
#@Hui-Hsien Chou,Arunee Trisiriroj,Sunyoung Park,Yue-Ie C. Hsing,Pamela C. Ronald,Patrick S. Schnable
#t2009
#cBMC Bioinformatics
#index2849960
#% 
#!
  
#*Iterative pruning PCA improves resolution of highly structured populations.
#@Apichart Intarapanich,Philip J. Shaw,Anunchai Assawamakin,Pongsakorn Wangkumhang,Chumpol Ngamphiw,Kridsadakorn Chaichoompu,Jittima Piriyapongsa,Sissades Tongsima
#t2009
#cBMC Bioinformatics
#index2849880
#% 
#!
  
#*LucidDraw: Efficiently visualizing complex biochemical networks within MATLAB.
#@Sheng He,Juan Mei,Guiyang Shi,Zhengxiang Wang,Weijiang Li
#t2010
#cBMC Bioinformatics
#index2850447
#% 
#!
  
#*A boosting method for maximizing the partial area under the ROC curve.
#@Osamu Komori,Shinto Eguchi
#t2010
#cBMC Bioinformatics
#index2850484
#% 
#!
  
#*KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database.
#@Konstantinos Moutselos,Ioannis Kanaris,Aristotelis Chatziioannou,Ilias Maglogiannis,Fragiskos N. Kolisis
#t2009
#cBMC Bioinformatics
#index2850028
#% 
#!
  
#*Detecting disease associated modules and prioritizing active genes based on high throughput data.
#@Yu-Qing Qiu,Shi-Hua Zhang,Xiang-Sun Zhang,Luonan Chen
#t2010
#cBMC Bioinformatics
#index2850404
#% 
#!
  
#*Investigating heterogeneous protein annotations toward cross-corpora utilization.
#@Yue Wang,Jin-Dong Kim,Rune Sætre,Sampo Pyysalo,Jun-ichi Tsujii
#t2009
#cBMC Bioinformatics
#index2850001
#% 
#!
  
#*VANLO - Interactive visual exploration of aligned biological networks.
#@Steffen Brasch,Lars Linsen,Georg Fuellen
#t2009
#cBMC Bioinformatics
#index2849946
#% 
#!
  
#*Functional characterization and topological modularity of molecular interaction networks.
#@Jayesh Pandey,Mehmet Koyutürk,Ananth Grama
#t2010
#cBMC Bioinformatics
#index2850551
#% 
#!
  
#*A journey to Semantic Web query federation in the life sciences.
#@Kei-Hoi Cheung,H. Robert Frost,M. Scott Marshall,Eric Prud'hommeaux,Matthias Samwald,Jun Zhao,Adrian Paschke
#t2009
#cBMC Bioinformatics
#index2850069
#% 
#!
  
#*mu-CS: An extension of the TM4 platform to manage Affymetrix binary data.
#@Pietro Hiram Guzzi,Mario Cannataro
#t2010
#cBMC Bioinformatics
#index2850425
#% 
#!
  
#*Detection of gene pathways with predictive power for breast cancer prognosis.
#@Shuangge Ma,Michael R. Kosorok
#t2010
#cBMC Bioinformatics
#index2850321
#% 
#!
  
#*Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline.
#@Joachim M. De Schrijver,Kim De Leeneer,Steve Lefever,Nick Sabbe,Filip Pattyn,Filip Van Nieuwerburgh,Paul Coucke,Dieter Deforce,Jo Vandesompele,Sofie Bekaert,Jan Hellemans,Wim Van Criekinge
#t2010
#cBMC Bioinformatics
#index2850278
#% 
#!
  
#*OrgConv: detection of gene conversion using consensus sequences and its application in plant mitochondrial and chloroplast homologs.
#@Weilong Hao
#t2010
#cBMC Bioinformatics
#index2850334
#% 
#!
  
#*Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspective.
#@S. P. T. Krishnan,Sim Sze Liang,Bharadwaj Veeravalli
#t2010
#cBMC Bioinformatics
#index2850550
#% 
#!
  
#*TabSQL: a MySQL tool to facilitate mapping user data to public databases.
#@Xiaoqin Xia,Michael McClelland,Yipeng Wang
#t2010
#cBMC Bioinformatics
#index2850341
#% 
#!
  
#*MetaTM - a consensus method for transmembrane protein topology prediction.
#@Martin Klammer,David N. Messina,Thomas Schmitt,Erik L. L. Sonnhammer
#t2009
#cBMC Bioinformatics
#index2849982
#% 
#!
  
#*Nonparametric methods for the analysis of single-color pathogen microarrays.
#@Omar J. Jabado,Sean Conlan,P. Lan Quan,Jeffrey Hui,Gustavo Palacios,Mady Hornig,Thomas Briese,W. Ian Lipkin
#t2010
#cBMC Bioinformatics
#index2850356
#% 
#!
  
#*An efficient algorithm for the stochastic simulation of the hybridization of DNA to microarrays.
#@Erdem Arslan,Ian J. Laurenzi
#t2009
#cBMC Bioinformatics
#index2849877
#% 
#!
  
#*Integration of multiple data sources to prioritize candidate genes using discounted rating system.
#@Yongjin Li,Jagdish Chandra Patra
#t2010
#cBMC Bioinformatics
#index2850454
#% 
#!
  
#*A computational framework for qualitative simulation of nonlinear dynamical models of gene-regulatory networks.
#@Liliana Ironi,Luigi Panzeri
#t2009
#cBMC Bioinformatics
#index2850090
#% 
#!
  
#*Critical assessment of sequence-based protein-protein interaction prediction methods that do not require homologous protein sequences.
#@Yungki Park
#t2009
#cBMC Bioinformatics
#index2849951
#% 
#!
  
#*Regularized estimation of large-scale gene association networks using graphical Gaussian models.
#@Nicole Krämer,Juliane Schäfer,Anne-Laure Boulesteix
#t2009
#cBMC Bioinformatics
#index2849965
#% 
#!
  
#*OGO: an ontological approach for integrating knowledge about orthology.
#@José Antonio Miñarro-Giménez,Marisa Madrid,Jesualdo Tomás Fernández-Breis
#t2009
#cBMC Bioinformatics
#index2850076
#% 
#!
  
#*A multi-filter enhanced genetic ensemble system for gene selection and sample classification of microarray data.
#@Pengyi Yang,Bing Bing Zhou,Zili Zhang,Albert Y. Zomaya
#t2010
#cBMC Bioinformatics
#index2850536
#% 
#!
  
#*Transcript quantification with RNA-Seq data.
#@Regina Bohnert,Jonas Behr,Gunnar Rätsch
#t2009
#cBMC Bioinformatics
#index2850139
#% 
#!
  
#*Prediction of protein-protein interaction sites using an ensemble method.
#@Lei Deng,Jihong Guan,Qiwen Dong,Shuigeng Zhou
#t2009
#cBMC Bioinformatics
#index2849974
#% 
#!
  
#*Spatial normalization improves the quality of genotype calling for Affymetrix SNP 6.0 arrays.
#@High-Seng Chai,Terry M. Therneau,Kent R. Bailey,Jean-Pierre Kocher
#t2010
#cBMC Bioinformatics
#index2850418
#% 
#!
  
#*Reduced representation of protein structure: implications on efficiency and scope of detection of structural similarity.
#@Zong Hong Zhang,Hwee Kuan Lee,Ivana Mihalek
#t2010
#cBMC Bioinformatics
#index2850224
#% 
#!
  
#*Predicting gene function using hierarchical multi-label decision tree ensembles.
#@Leander Schietgat,Celine Vens,Jan Struyf,Hendrik Blockeel,Dragi Kocev,Saso Dzeroski
#t2010
#cBMC Bioinformatics
#index2850349
#% 
#!
  
#*gene co-expression network and its functional modules.
#@Linyong Mao,John L. Van Hemert,Sudhansu Dash,Julie A. Dickerson
#t2009
#cBMC Bioinformatics
#index2849872
#% 
#!
  
#*An ontology-based search engine for protein-protein interactions.
#@Byungkyu Park,Kyungsook Han
#t2010
#cBMC Bioinformatics
#index2850543
#% 
#!
  
#*Biana: a software framework for compiling biological interactions and analyzing networks.
#@Javier Garcia-Garcia,Emre Guney,Ramon Aragues,Joan Planas-Iglesias,Baldo Oliva
#t2010
#cBMC Bioinformatics
#index2850258
#% 
#!
  
#*SING: Subgraph search In Non-homogeneous Graphs.
#@Raffaele Di Natale,Alfredo Ferro,Rosalba Giugno,Misael Mongiovì,Alfredo Pulvirenti,Dennis Shasha
#t2010
#cBMC Bioinformatics
#index2850327
#% 
#!
  
#*KIRMES: kernel-based identification of regulatory modules in euchromatic sequences.
#@Sebastian J. Schultheiß,Wolfgang Busch,Jan Lohmann,Oliver Kohlbacher,Gunnar Rätsch
#t2009
#cBMC Bioinformatics
#index2850121
#% 
#!
  
#*MG: Maximum Margin Microarray Gridding.
#@Dimitris G. Bariamis,Dimitrios K. Iakovidis,Dimitris Maroulis
#t2010
#cBMC Bioinformatics
#index2850432
#% 
#!
  
#*MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction.
#@Torsten Blum,Sebastian Briesemeister,Oliver Kohlbacher
#t2009
#cBMC Bioinformatics
#index2850019
#% 
#!
  
#*Machine learning approach to predict protein phosphorylation sites by incorporating evolutionary information.
#@Ashis Kumer Biswas,Nasimul Noman,Abdur Rahman Sikder
#t2010
#cBMC Bioinformatics
#index2850481
#% 
#!
  
#*Data analysis issues for allele-specific expression using Illumina's GoldenGate assay.
#@Matthew E. Ritchie,Matthew S. Forrest,Antigone S. Dimas,Caroline Daelemans,Emmanouil T. Dermitzakis,Panagiotis Deloukas,Simon Tavaré
#t2010
#cBMC Bioinformatics
#index2850166
#% 
#!
  
#*G-stack modulated probe intensities on expression arrays - sequence corrections and signal calibration.
#@Mario Fasold,Peter F. Stadler,Hans Binder
#t2010
#cBMC Bioinformatics
#index2850474
#% 
#!
  
#*Identification of NAD interacting residues in proteins.
#@Hifzur Rahman Ansari,Gajendra P. S. Raghava
#t2010
#cBMC Bioinformatics
#index2850307
#% 
#!
  
#*JISTIC: Identification of Significant Targets in Cancer.
#@Felix Sanchez-Garcia,Uri David Akavia,Eyal Mozes,Dana Pe'er
#t2010
#cBMC Bioinformatics
#index2850314
#% 
#!
  
#*MrsRF: an efficient MapReduce algorithm for analyzing large collections of evolutionary trees.
#@Suzanne Matthews,Tiffani L. Williams
#t2010
#cBMC Bioinformatics
#index2850558
#% 
#!
  
#*In silico fragmentation for computer assisted identification of metabolite mass spectra.
#@Sebastian Wolf,Stephan Schmidt,Matthias Müller-Hannemann,Steffen Neumann
#t2010
#cBMC Bioinformatics
#index2850285
#% 
#!
  
#*PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data.
#@Benjamin Georgi,Ivan Gesteira Costa,Alexander Schliep
#t2010
#cBMC Bioinformatics
#index2850175
#% 
#!
  
#*CNstream: A method for the identification and genotyping of copy number polymorphisms using Illumina microarrays.
#@Arnald Alonso,Antonio Julià,Raül Tortosa,Cristina Canaleta,Juan D. Cañete,Javier Ballina,Alejandro Balsa,Jesús Tornero,Sara Marsal
#t2010
#cBMC Bioinformatics
#index2850300
#% 
#!
  
#*Shared probe design and existing microarray reanalysis using PICKY.
#@Hui-Hsien Chou
#t2010
#cBMC Bioinformatics
#index2850384
#% 
#!
  
#*Analysis and modeling of time-course gene-expression profiles from nanomaterial-exposed primary human epidermal keratinocytes.
#@Amin Zollanvari,Mary Jane Cunningham,Ulisses Braga-Neto,Edward R. Dougherty
#t2009
#cBMC Bioinformatics
#index2850153
#% 
#!
  
#*permGPU: Using graphics processing units in RNA microarray association studies.
#@Ivo D. Shterev,Sin-Ho Jung,Stephen L. George,Kouros Owzar
#t2010
#cBMC Bioinformatics
#index2850244
#% 
#!
  
#*Feature selection for fMRI-based deception detection.
#@Bo Jin,Alvin Strasburger,Steven J. Laken,F. Andrew Kozel,Kevin A. Johnson,Mark S. George,Xinghua Lu
#t2009
#cBMC Bioinformatics
#index2850071
#% 
#!
  
#*Reverse engineering gene regulatory network from microarray data using linear time-variant model.
#@Mitra Kabir,Nasimul Noman,Hitoshi Iba
#t2010
#cBMC Bioinformatics
#index2850538
#% 
#!
  
#*A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network.
#@Zhuhong You,Zheng Yin,Kyungsook Han,De-Shuang Huang,Xiaobo Zhou
#t2010
#cBMC Bioinformatics
#index2850383
#% 
#!
  
#*and : software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing.
#@Daniel N. Frank
#t2009
#cBMC Bioinformatics
#index2850008
#% 
#!
  
#*Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods.
#@Valentín Ruano-Rubio,Olivier Poch,Julie D. Thompson
#t2009
#cBMC Bioinformatics
#index2849925
#% 
#!
  
#*HORI: a web server to compute Higher Order Residue Interactions in protein structures.
#@Pandurangan Sundaramurthy,Khader Shameer,Raashi Sreenivasan,Sunita Gakkhar,Ramanathan Sowdhamini
#t2010
#cBMC Bioinformatics
#index2850559
#% 
#!
  
#*PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees.
#@Philippe Gouret,Julie D. Thompson,Pierre Pontarotti
#t2009
#cBMC Bioinformatics
#index2849979
#% 
#!
  
#*Finding sRNA generative locales from high-throughput sequencing data with NiBLS.
#@Daniel MacLean,Vincent Moulton,David J. Studholme
#t2010
#cBMC Bioinformatics
#index2850510
#% 
#!
  
#*Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates.
#@Mehar S. Khatkar,Matthew Hobbs,Markus Neuditschko,Johann Sölkner,Frank W. Nicholas,Herman W. Raadsma
#t2010
#cBMC Bioinformatics
#index2850342
#% 
#!
  
#*Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information.
#@Nitish K. Mishra,Gajendra P. S. Raghava
#t2010
#cBMC Bioinformatics
#index2850593
#% 
#!
  
#*Conditional random pattern model for copy number aberration detection.
#@Fuhai Li,Xiaobo Zhou,Wanting Huang,Chung-Che Chang,Stephen T. C. Wong
#t2010
#cBMC Bioinformatics
#index2850453
#% 
#!
  
#*Structural similarity assessment for drug sensitivity prediction in cancer.
#@Pavithra Shivakumar,Michael Krauthammer
#t2009
#cBMC Bioinformatics
#index2850111
#% 
#!
  
#*Epitopia: a web-server for predicting B-cell epitopes.
#@Nimrod D. Rubinstein,Itay Mayrose,Eric Martz,Tal Pupko
#t2009
#cBMC Bioinformatics
#index2850036
#% 
#!
  
#*Riboswitch Detection Using Profile Hidden Markov Models.
#@Payal Singh,Pradipta Bandyopadhyay,Sudha Bhattacharya,A. Krishnamachari,Supratim Sengupta
#t2009
#cBMC Bioinformatics
#index2849886
#% 
#!
  
#*Computational methods to identify novel methyltransferases.
#@Tanya C. Petrossian,Steven G. Clarke
#t2009
#cBMC Bioinformatics
#index2850099
#% 
#!
  
#*An interaction-motif-based scoring function for protein-ligand docking.
#@Zhong-Ru Xie,Ming-Jing Hwang
#t2010
#cBMC Bioinformatics
#index2850398
#% 
#!
  
#*Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.
#@Robert C. McLeay,Timothy L. Bailey
#t2010
#cBMC Bioinformatics
#index2850210
#% 
#!
  
#*Computing and visually analyzing mutual information in molecular co-evolution.
#@Sebastian Bremm,Tobias Schreck,Patrick Boba,Stephanie Held,Kay Hamacher
#t2010
#cBMC Bioinformatics
#index2850322
#% 
#!
  
#*Testing the additional predictive value of high-dimensional molecular data.
#@Anne-Laure Boulesteix,Torsten Hothorn
#t2010
#cBMC Bioinformatics
#index2850482
#% 
#!
  
#*Phylogenetic representativeness: a new method for evaluating taxon sampling in evolutionary studies.
#@Federico Plazzi,Ronald R. Ferrucci,Marco Passamonti
#t2010
#cBMC Bioinformatics
#index2850412
#% 
#!
  
#*TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data.
#@Álvaro Cuadros-Inostroza,Camila Caldana,Henning Redestig,Miyako Kusano,Jan Lisec,Hugo Peña-Cortés,Lothar Willmitzer,Matthew A. Hannah
#t2009
#cBMC Bioinformatics
#index2850015
#% 
#!
  
#*MPprimer: a program for reliable multiplex PCR primer design.
#@Zhiyong Shen,Wubin Qu,Wen Wang,Yiming Lu,Yonghong Wu,Zhifeng Li,Xingyi Hang,Xiaolei Wang,Dongsheng Zhao,Chenggang Zhang
#t2010
#cBMC Bioinformatics
#index2850245
#% 
#!
  
#*Concept-based query expansion for retrieving gene related publications from MEDLINE.
#@Sérgio Matos,Joel Arrais,João Maia-Rodrigues,José Luís Oliveira
#t2010
#cBMC Bioinformatics
#index2850489
#% 
#!
  
#*Prediction of backbone dihedral angles and protein secondary structure using support vector machines.
#@Petros Kountouris,Jonathan D. Hirst
#t2009
#cBMC Bioinformatics
#index2849932
#% 
#!
  
#*eCOMPAGT integrates mtDNA: import, validation and export of mitochondrial DNA profiles for population genetics, tumour dynamics and genotype-phenotype association studies.
#@Hansi Weißensteiner,Sebastian Schönherr,Günther Specht,Florian Kronenberg,Anita Brandstätter
#t2010
#cBMC Bioinformatics
#index2850328
#% 
#!
  
#*Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function.
#@Jeremy D. Selengut,Douglas B. Rusch,Daniel H. Haft
#t2010
#cBMC Bioinformatics
#index2850231
#% 
#!
  
#*MTar: a computational microRNA target prediction architecture for human transcriptome.
#@Vinod Chandra,Reshmi Girijadevi,Achuthsankar S. Nair,Sreenadhan S. Pillai,Radhakrishna M. Pillai
#t2010
#cBMC Bioinformatics
#index2850586
#% 
#!
  
#*A semi-parametric Bayesian model for unsupervised differential co-expression analysis.
#@Johannes M. Freudenberg,Siva Sivaganesan,Michael Wagner,Mario Medvedovic
#t2010
#cBMC Bioinformatics
#index2850369
#% 
#!
  
#*Comparative analysis of thermophilic and mesophilic proteins using Protein Energy Networks.
#@M. S. Vijayabaskar,Saraswathi Vishveshwara
#t2010
#cBMC Bioinformatics
#index2850600
#% 
#!
  
#*Odefy -- From discrete to continuous models.
#@Jan Krumsiek,Sebastian Pölsterl,Dominik M. Wittmann,Fabian J. Theis
#t2010
#cBMC Bioinformatics
#index2850503
#% 
#!
  
#*Using caching and optimization techniques to improve performance of the Ensembl website.
#@Anne Parker,Eugene Bragin,Simon Brent,Bethan Pritchard,James A. Smith,Stephen Trevanion
#t2010
#cBMC Bioinformatics
#index2850313
#% 
#!
  
#*Predicting Bevirimat resistance of HIV-1 from genotype.
#@Dominik Heider,Jens Verheyen,Daniel Hoffmann
#t2010
#cBMC Bioinformatics
#index2850467
#% 
#!
  
#*FluTyper-an algorithm for automated typing and subtyping of the influenza virus from high resolution mass spectral data.
#@Jason W. H. Wong,Alexander B. Schwahn,Kevin M. Downard
#t2010
#cBMC Bioinformatics
#index2850364
#% 
#!
  
#*ParallABEL: an R library for generalized parallelization of genome-wide association studies.
#@Unitsa Sangket,Surakameth Mahasirimongkol,Wasun Chantratita,Pichaya Tandayya,Yurii S. Aulchenko
#t2010
#cBMC Bioinformatics
#index2850439
#% 
#!
  
#*Integrating phenotype and gene expression data for predicting gene function.
#@Brandon M. Malone,Andy D. Perkins,Susan M. Bridges
#t2009
#cBMC Bioinformatics
#index2850064
#% 
#!
  
#*Feature selection environment for genomic applications.
#@Fabrício Martins Lopes,David Correa Martins Jr.,Roberto M. Cesar Jr.
#t2009
#cBMC Bioinformatics
#index2849922
#% 
#!
  
#*Microarray platform consistency is revealed by biologically functional analysis of gene expression profiles.
#@Zhiguang Li,Zhenqiang Su,Zhining Wen,Leming M. Shi,Tao Chen
#t2009
#cBMC Bioinformatics
#index2850085
#% 
#!
  
#*Classification and biomarker identification using gene network modules and support vector machines.
#@Malik Yousef,Mohamed Ketany,Larry M. Manevitz,Louise C. Showe,Michael K. Showe
#t2009
#cBMC Bioinformatics
#index2849915
#% 
#!
  
#*Decoding HMMs using the best paths: algorithms and applications.
#@Daniel G. Brown,Daniil Golod
#t2010
#cBMC Bioinformatics
#index2850607
#% 
#!
  
#*Artificial and natural duplicates in pyrosequencing reads of metagenomic data.
#@Beifang Niu,Limin Fu,Shulei Sun,Weizhong Li
#t2010
#cBMC Bioinformatics
#index2850460
#% 
#!
  
#*Parameters for accurate genome alignment.
#@Martin C. Frith,Michiaki Hamada,Paul Horton
#t2010
#cBMC Bioinformatics
#index2850189
#% 
#!
  
#*The value of position-specific priors in motif discovery using MEME.
#@Timothy L. Bailey,Mikael Bodén,Tom Whitington,Philip Machanick
#t2010
#cBMC Bioinformatics
#index2850496
#% 
#!
  
#*Towards large-scale sample annotation in gene expression repositories.
#@Erik Pitzer,Ronilda Lacson,Christian Hinske,Jihoon Kim,Pedro A. F. Galante,Lucila Ohno-Machado
#t2009
#cBMC Bioinformatics
#index2850107
#% 
#!
  
#*RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.
#@Mariusz Popenda,Marta Szachniuk,Marek Blazewicz,Szymon Wasik,Edmund K. Burke,Jacek Blazewicz,Ryszard W. Adamiak
#t2010
#cBMC Bioinformatics
#index2850272
#% 
#!
  
#*Accurate microRNA target prediction correlates with protein repression levels.
#@Manolis Maragkakis,Panagiotis Alexiou,Giorgos L. Papadopoulos,Martin Reczko,Theodore Dalamagas,Giorgos Giannopoulos,George I. Goumas,Evangelos Koukis,Kornilios Kourtis,Victor A. Simossis,Praveen Sethupathy,Thanasis Vergoulis,Nectarios Koziris,Timos K. Sellis,Panayotis Tsanakas,Artemis G. Hatzigeorgiou
#t2009
#cBMC Bioinformatics
#index2849879
#% 
#!
  
#*SpectraClassifier 1.0: a user friendly, automated MRS-based classifier-development system.
#@Sandra Ortega-Martorell,Iván Olier,Margarida Julià-Sapé,Carles Arús
#t2010
#cBMC Bioinformatics
#index2850517
#% 
#!
  
#*DescFold: A web server for protein fold recognition.
#@Ren-Xiang Yan,Jing-Na Si,Chuan Wang,Ziding Zhang
#t2009
#cBMC Bioinformatics
#index2850000
#% 
#!
  
#*A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction.
#@Brice Hoffmann,Mikhail Zaslavskiy,Jean-Philippe Vert,Véronique Stoven
#t2010
#cBMC Bioinformatics
#index2850286
#% 
#!
  
#*NATbox: a network analysis toolbox in R.
#@Shweta S. Chavan,Michael A. Bauer,Marco Scutari,Radhakrishnan Nagarajan
#t2009
#cBMC Bioinformatics
#index2850050
#% 
#!
  
#*ICRPfinder: a fast pattern design algorithm for coding sequences and its application in finding potential restriction enzyme recognition sites.
#@Chao Li,Yuhua Li,Xiangmin Zhang,Phillip Stafford,Valentin Dinu
#t2009
#cBMC Bioinformatics
#index2850033
#% 
#!
  
#*. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction.
#@Morten Nielsen,Ole Lund
#t2009
#cBMC Bioinformatics
#index2849907
#% 
#!
  
#*(PS)-v2: template-based protein structure prediction server.
#@Chih-Chieh Chen,Jenn-Kang Hwang,Jinn-Moon Yang
#t2009
#cBMC Bioinformatics
#index2850025
#% 
#!
  
#*Amino acid classification based spectrum kernel fusion for protein subnuclear localization.
#@Suyu Mei,Wang Fei
#t2010
#cBMC Bioinformatics
#index2850535
#% 
#!
  
#*Improving de novo sequence assembly using machine learning and comparative genomics for overlap correction.
#@Lance E. Palmer,Mathäus Dejori,Randall A. Bolanos,Daniel P. Fasulo
#t2010
#cBMC Bioinformatics
#index2850473
#% 
#!
  
#*NeatMap - non-clustering heat map alternatives in R.
#@Satwik Rajaram,Yoshi Oono
#t2010
#cBMC Bioinformatics
#index2850403
#% 
#!
  
#*Semantic Web Applications and Tools for Life Sciences, 2008 - Introduction.
#@Albert Burger,Paolo Romano,Adrian Paschke,Andrea Splendiani
#t2009
#cBMC Bioinformatics
#index2850054
#% 
#!
  
#*Amino acid "little Big Bang": Representing amino acid substitution matrices as dot products of Euclidian vectors.
#@Karel Zimmermann,Jean-François Gibrat
#t2010
#cBMC Bioinformatics
#index2850357
#% 
#!
  
#*Alignment and clustering of phylogenetic markers - implications for microbial diversity studies.
#@James Robert White,Saket Navlakha,Niranjan Nagarajan,Mohammadreza Ghodsi,Carl Kingsford,Mihai Pop
#t2010
#cBMC Bioinformatics
#index2850299
#% 
#!
  
#*Comparison of phylogenetic trees through alignment of embedded evolutionary distances.
#@Kwangbom Choi,Shawn M. Gomez
#t2009
#cBMC Bioinformatics
#index2849914
#% 
#!
  
#*Partitioning of copy-number genotypes in pedigrees.
#@Louis-Philippe Lemieux Perreault,Gregor U. Andelfinger,Géraldine Asselin,Marie-Pierre Dube
#t2010
#cBMC Bioinformatics
#index2850417
#% 
#!
  
#*Learning gene regulatory networks from only positive and unlabeled data.
#@Luigi Cerulo,Charles Elkan,Michele Ceccarelli
#t2010
#cBMC Bioinformatics
#index2850448
#% 
#!
  
#*Pairwise and higher-order correlations among drug-resistance mutations in HIV-1 subtype B protease.
#@Omar Haq,Ronald M. Levy,Alexandre V. Morozov,Michael Andrec
#t2009
#cBMC Bioinformatics
#index2850137
#% 
#!
  
#*Indirect two-sided relative ranking: a robust similarity measure for gene expression data.
#@Louis Licamele,Lise Getoor
#t2010
#cBMC Bioinformatics
#index2850276
#% 
#!
  
#*proteomic and transcriptomic data integration and annotation based on semantic web technologies.
#@Nadia Anwar,Ela Hunt
#t2009
#cBMC Bioinformatics
#index2850061
#% 
#!
  
#*Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis.
#@Jens Keilwagen,Jan Grau,Stefan Posch,Ivo Grosse
#t2010
#cBMC Bioinformatics
#index2850424
#% 
#!
  
#*Computational analysis of gene expression space associated with metastatic cancer.
#@Andrey A. Ptitsyn
#t2009
#cBMC Bioinformatics
#index2850082
#% 
#!
  
#*PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation.
#@Inken Wohlers,Lars Petzold,Francisco S. Domingues,Gunnar W. Klau
#t2009
#cBMC Bioinformatics
#index2850144
#% 
#!
  
#*web cellHTS2: A web-application for the analysis of high-throughput screening data.
#@Oliver Pelz,Moritz Gilsdorf,Michael Boutros
#t2010
#cBMC Bioinformatics
#index2850333
#% 
#!
  
#*multiplierz: an extensible API based desktop environment for proteomics data analysis.
#@Jignesh R. Parikh,Manor Askenazi,Scott B. Ficarro,Tanya Cashorali,James T. Webber,Nathaniel C. Blank,Yi Zhang,Jarrod A. Marto
#t2009
#cBMC Bioinformatics
#index2849988
#% 
#!
  
#*Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease.
#@Brett R. South,Shuying Shen,Makoto Jones,Jennifer Garvin,Matthew H. Samore,Wendy Webber Chapman,Adi V. Gundlapalli
#t2009
#cBMC Bioinformatics
#index2850147
#% 
#!
  
#*An effective approach for identification of protein-DNA binding sites from paired-end ChIP-Seq data.
#@Congmao Wang,Jie Xu,Dasheng Zhang,Zoe A. Wilson,Dabing Zhang
#t2010
#cBMC Bioinformatics
#index2850263
#% 
#!
  
#*MtSNPscore: a combined evidence approach for assessing cumulative impact of mitochondrial variations in disease.
#@Anshu Bhardwaj,Mitali Mukerji,Shipra Sharma,Jinny Paul,Chaitanya S. Gokhale,Achal K. Srivastava,Shrish Tiwari
#t2009
#cBMC Bioinformatics
#index2850075
#% 
#!
  
#*Automated vocabulary discovery for geo-parsing online epidemic intelligence.
#@Mikaela Keller,Clark C. Freifeld,John S. Brownstein
#t2009
#cBMC Bioinformatics
#index2849869
#% 
#!
  
#*GIFtS: annotation landscape analysis with GeneCards.
#@Arye Harel,Aron Inger,Gil Stelzer,Liora Strichman-Almashanu,Irina Dalah,Marilyn Safran,Doron Lancet
#t2009
#cBMC Bioinformatics
#index2850044
#% 
#!
  
#*Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction.
#@Drew H. Bryant,Mark Moll,Brian Y. Chen,Viacheslav Fofanov,Lydia E. Kavraki
#t2010
#cBMC Bioinformatics
#index2850259
#% 
#!
  
#*Active machine learning for transmembrane helix prediction.
#@Hatice U. Osmanbeyoglu,Jessica A. Wehner,Jaime G. Carbonell,Madhavi Ganapathiraju
#t2010
#cBMC Bioinformatics
#index2850573
#% 
#!
  
#*A systems biology approach to the identification and analysis of transcriptional regulatory networks in osteocytes.
#@Angela K. Dean,Stephen E. Harris,Ivo Kalajzic,Jianhua Ruan
#t2009
#cBMC Bioinformatics
#index2850128
#% 
#!
  
#*Extracting causal relations on HIV drug resistance from literature.
#@Quoc-Chinh Bui,Breanndán Ó Nualláin,Charles A. Boucher,Peter M. A. Sloot
#t2010
#cBMC Bioinformatics
#index2850183
#% 
#!
  
#*Assembly complexity of prokaryotic genomes using short reads.
#@Carl Kingsford,Michael C. Schatz,Mihai Pop
#t2010
#cBMC Bioinformatics
#index2850308
#% 
#!
  
#*Dynamic probe selection for studying microbial transcriptome with high-density genomic tiling microarrays.
#@Hedda Høvik,Tsute Chen
#t2010
#cBMC Bioinformatics
#index2850348
#% 
#!
  
#*Finding local communities in protein networks.
#@Konstantin Voevodski,Shang-Hua Teng,Yu Xia
#t2009
#cBMC Bioinformatics
#index2850018
#% 
#!
  
#*Protein binding hot spots and the residue-residue pairing preference: a water exclusion perspective.
#@Qian Liu,Jinyan Li
#t2010
#cBMC Bioinformatics
#index2850291
#% 
#!
  
#*GeneMesh: a web-based microarray analysis tool for relating differentially expressed genes to MeSH terms.
#@Saurin D. Jani,Gary L. Argraves,Jeremy L. Barth,W. Scott Argraves
#t2010
#cBMC Bioinformatics
#index2850236
#% 
#!
  
#*A statistical framework for differential network analysis from microarray data.
#@Ryan Gill,Somnath Datta,Susmita Datta
#t2010
#cBMC Bioinformatics
#index2850190
#% 
#!
  
#*Fast motif recognition via application of statistical thresholds.
#@Christina Boucher,James King
#t2010
#cBMC Bioinformatics
#index2850549
#% 
#!
  
#*State of the art: refinement of multiple sequence alignments.
#@Saikat Chakrabarti,Christopher J. Lanczycki,Anna R. Panchenko,Teresa M. Przytycka,Paul A. Thiessen,Stephen H. Bryant
#t2010
#cBMC Bioinformatics
#index2850223
#% 
#!
  
#*Identifying differentially regulated subnetworks from phosphoproteomic data.
#@Martin Klammer,Klaus Godl,Andreas Tebbe,Christoph Schaab
#t2010
#cBMC Bioinformatics
#index2850277
#% 
#!
  
#*Semantic annotation of morphological descriptions: an overall strategy.
#@Hong Cui
#t2010
#cBMC Bioinformatics
#index2850283
#% 
#!
  
#*Data recovery and integration from public databases uncovers transformation-specific transcriptional downregulation of cAMP-PKA pathway-encoding genes.
#@Chiara Balestrieri,Lilia Alberghina,Marco Vanoni,Ferdinando Chiaradonna
#t2009
#cBMC Bioinformatics
#index2850165
#% 
#!
  
#*An integrated approach to the interpretation of Single Amino Acid Polymorphisms within the framework of CATH and Gene3D.
#@José M. G. Izarzugaza,Anja Baresic,Lisa E. M. McMillan,Corin Yeats,Andrew B. Clegg,Christine A. Orengo,Andrew C. R. Martin,Alfonso Valencia
#t2009
#cBMC Bioinformatics
#index2850072
#% 
#!
  
#*Linguistic feature analysis for protein interaction extraction.
#@Timur Fayruzov,Martine De Cock,Chris Cornelis,Véronique Hoste
#t2009
#cBMC Bioinformatics
#index2849862
#% 
#!
  
#*FRASS: the web-server for RNA structural comparison.
#@Svetlana Kirillova,Silvio C. E. Tosatto,Oliviero Carugo
#t2010
#cBMC Bioinformatics
#index2850378
#% 
#!
  
#*The first step in the development of text mining technology for cancer risk assessment: identifying and organizing scientific evidence in risk assessment literature.
#@Anna Korhonen,Ilona Silins,Lin Sun,Ulla Stenius
#t2009
#cBMC Bioinformatics
#index2849943
#% 
#!
  
#*A knowledge-guided strategy for improving the accuracy of scoring functions in binding affinity prediction.
#@Tiejun Cheng,Zhihai Liu,Renxiao Wang
#t2010
#cBMC Bioinformatics
#index2850433
#% 
#!
  
#*Conditional independence relations among biological markers may improve clinical decision as in the case of triple negative breast cancers.
#@Federico M. Stefanini,Danila Coradini,Elia Biganzoli
#t2009
#cBMC Bioinformatics
#index2850051
#% 
#!
  
#*New statistical potential for quality assessment of protein models and a survey of energy functions.
#@Dmitry Rykunov,András Fiser
#t2010
#cBMC Bioinformatics
#index2850522
#% 
#!
  
#*Comparison of concept recognizers for building the Open Biomedical Annotator.
#@Nigam H. Shah,Nipun Bhatia,Clement Jonquet,Daniel L. Rubin,Annie P. Chiang,Mark A. Musen
#t2009
#cBMC Bioinformatics
#index2850110
#% 
#!
  
#*Retraction: In silico screening of herbal and nanoparticle lead compounds for effectivity against H5N1, H1N1 neuraminidase and telomerase.
#@Sayak Ganguli,Manjita Mazumder,Protip Basu,Paushali Roy,Sayani Mitra,Abhijit Datta
#t2010
#cBMC Bioinformatics
#index2850459
#% 
#!
  
#*Discovering local patterns of co - evolution: computational aspects and biological examples.
#@Tamir Tuller,Yifat Felder,Martin Kupiec
#t2010
#cBMC Bioinformatics
#index2850211
#% 
#!
  
#*Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data.
#@Bin Chen,Xiao Dong,Dazhi Jiao,Huijun Wang,Qian Zhu,Ying Ding,David J. Wild
#t2010
#cBMC Bioinformatics
#index2850509
#% 
#!
  
#*Rapid DNA barcoding analysis of large datasets using the composition vector method.
#@Ka Hou Chu,Minli Xu,Chi Pang Li
#t2009
#cBMC Bioinformatics
#index2850108
#% 
#!
  
#*Effects of scanning sensitivity and multiple scan algorithms on microarray data quality.
#@Andrew Williams,Errol M. Thomson
#t2010
#cBMC Bioinformatics
#index2850312
#% 
#!
  
#*Potentials 'R'Us web-server for protein energy estimations with coarse-grained knowledge-based potentials.
#@Yaping Feng,Andrzej Kloczkowski,Robert L. Jernigan
#t2010
#cBMC Bioinformatics
#index2850452
#% 
#!
  
#*Hybridization thermodynamics of NimbleGen Microarrays.
#@Ulrike Mückstein,Germán G. Leparc,Alexandra Posekany,Ivo L. Hofacker,David P. Kreil
#t2010
#cBMC Bioinformatics
#index2850319
#% 
#!
  
#*ConservedPrimers 2.0: A high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery.
#@Frank M. You,Naxin Huo,Yong Qiang Gu,Gerard R. Lazo,Jan Dvorak,Olin D. Anderson
#t2009
#cBMC Bioinformatics
#index2849963
#% 
#!
  
#*MetaBar - a tool for consistent contextual data acquisition and standards compliant submission.
#@Wolfgang Hankeln,Pier Luigi Buttigieg,Dennis Fink,Renzo Kottmann,Pelin Yilmaz,Frank Oliver Glöckner
#t2010
#cBMC Bioinformatics
#index2850294
#% 
#!
  
#*Testing for mean and correlation changes in microarray experiments: an application for pathway analysis.
#@Mayer Alvo,Zhongzhu Liu,Andrew Williams,Carole Yauk
#t2010
#cBMC Bioinformatics
#index2850173
#% 
#!
  
#*Efficient alignment-free DNA barcode analytics.
#@Pavel P. Kuksa,Vladimir Pavlovic
#t2009
#cBMC Bioinformatics
#index2850154
#% 
#!
  
#*An overview of the CellML API and its implementation.
#@Andrew K. Miller,Justin Marsh,Adam Reeve,Alan Garny,Randall Britten,Matt D. B. Halstead,Jonathan Cooper,David P. Nickerson,Poul M. F. Nielsen
#t2010
#cBMC Bioinformatics
#index2850468
#% 
#!
  
#*In silico screening of herbal and nanoparticle lead compounds for effectivity against H5N1, H1N1 neuraminidase and telomerase.
#@Sayak Ganguli,Manjita Mazumder,Protip Basu,Paushali Roy,Sayani Mitra,Abhijit Datta
#t2010
#cBMC Bioinformatics
#index2850553
#% 
#!
  
#*Predicting conserved protein motifs with Sub-HMMs.
#@Kevin Horan,Christian R. Shelton,Thomas Girke
#t2010
#cBMC Bioinformatics
#index2850490
#% 
#!
  
#*MicroarrayDesigner: an online search tool and repository for near-optimal microarray experimental designs.
#@Ahmet Sacan,Nilgun Ferhatosmanoglu,Hakan Ferhatosmanoglu
#t2009
#cBMC Bioinformatics
#index2849887
#% 
#!
  
#*Saliva Ontology: An ontology-based framework for a Salivaomics Knowledge Base.
#@Jiye Ai,Barry Smith,Wong T. David
#t2010
#cBMC Bioinformatics
#index2850246
#% 
#!
  
#*Enabling multi-level relevance feedback on PubMed by integrating rank learning into DBMS.
#@Hwanjo Yu,Taehoon Kim,Jinoh Oh,Ilhwan Ko,Sungchul Kim,Wook-Shin Han
#t2010
#cBMC Bioinformatics
#index2850606
#%1219698
#%172312
#%594638
#%334616
#%596147
#%595966
#%472865
#%473219
#%473530
#%596106
#%595055
#%1026126
#!
  
#*Prediction of antigenic epitopes on protein surfaces by consensus scoring.
#@Shide Liang,Dandan Zheng,Chi Zhang,Martin Zacharias
#t2009
#cBMC Bioinformatics
#index2850035
#% 
#!
  
#*Local cell metrics: a novel method for analysis of cell-cell interactions.
#@Jing Su,Pedro J. Zapata,Chien-Chiang Chen,J. Carson Meredith
#t2009
#cBMC Bioinformatics
#index2849906
#% 
#!
  
#*A variational Bayes algorithm for fast and accurate multiple locus genome-wide association analysis.
#@Benjamin A. Logsdon,Gabriel E. Hoffman,Jason G. Mezey
#t2010
#cBMC Bioinformatics
#index2850395
#% 
#!
  
#*Graph ranking for exploratory gene data analysis.
#@Cuilan Gao,Xin Dang,Yixin Chen,Dawn Wilkins
#t2009
#cBMC Bioinformatics
#index2850093
#% 
#!
  
#*An automated framework for understanding structural variations in the binding grooves of MHC class II molecules.
#@Kalidas Yeturu,Tapani Utriainen,Graham J. L. Kemp,Nagasuma Chandra
#t2010
#cBMC Bioinformatics
#index2850572
#% 
#!
  
#*Conserved residue clusters at protein-protein interfaces and their use in binding site identification.
#@Mainak Guharoy,Pinak Chakrabarti
#t2010
#cBMC Bioinformatics
#index2850386
#% 
#!
  
#*L2-norm multiple kernel learning and its application to biomedical data fusion.
#@Shi Yu,Tillmann Falck,Anneleen Daemen,Léon-Charles Tranchevent,Johan A. K. Suykens,Bart De Moor,Yves Moreau
#t2010
#cBMC Bioinformatics
#index2850329
#% 
#!
  
#*Bayesian inference of biochemical kinetic parameters using the linear noise approximation.
#@Michal Komorowski,Bärbel Finkenstädt,Claire V. Harper,David A. Rand
#t2009
#cBMC Bioinformatics
#index2849859
#% 
#!
  
#*Colonyzer: automated quantification of micro-organism growth characteristics on solid agar.
#@Conor Lawless,Darren J. Wilkinson,Alexander Young,Stephen G. Addinall,David A. Lydall
#t2010
#cBMC Bioinformatics
#index2850180
#% 
#!
  
#*A first principles approach to differential expression in microarray data analysis.
#@Robert A. Rubin
#t2009
#cBMC Bioinformatics
#index2849896
#% 
#!
  
#*PreDisorder: ab initio sequence-based prediction of protein disordered regions.
#@Xin Deng,Jesse Eickholt,Jianlin Cheng
#t2009
#cBMC Bioinformatics
#index2849964
#% 
#!
  
#*MultiTest V.1.2, a program to binomially combine independent tests and performance comparison with other related methods on proportional data.
#@Thierry De Meeûs,Jean-François Guégan,Anatoly T. Teriokhin
#t2009
#cBMC Bioinformatics
#index2849999
#% 
#!
  
#*Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments.
#@James H. Bullard,Elizabeth Purdom,Kasper D. Hansen,Sandrine Dudoit
#t2010
#cBMC Bioinformatics
#index2850343
#% 
#!
  
#*FiGS: a filter-based gene selection workbench for microarray data.
#@Taeho Hwang,Choong-Hyun Sun,Taegyun Yun,Gwan-Su Yi
#t2010
#cBMC Bioinformatics
#index2850365
#% 
#!
  
#*Optimal contact definition for reconstruction of Contact Maps.
#@Jose M. Duarte,Rajagopal Sathyapriya,Henning Stehr,Ioannis Filippis,Michael Lappe
#t2010
#cBMC Bioinformatics
#index2850518
#% 
#!
  
#*CASSIOPE: An expert system for conserved regions searches.
#@Virginie Lopez Rascol,Anthony Levasseur,Olivier Chabrol,Simona Grusea,Philippe Gouret,Etienne G. J. Danchin,Pierre Pontarotti
#t2009
#cBMC Bioinformatics
#index2849954
#% 
#!
  
#*A Bayesian network approach to feature selection in mass spectrometry data.
#@Karl W. Kuschner,Dariya I. Malyarenko,William E. Cooke,Lisa H. Cazares,O. John Semmes,Eugene R. Tracy
#t2010
#cBMC Bioinformatics
#index2850592
#% 
#!
  
#*Physicochemical property space distribution among human metabolites, drugs and toxins.
#@Varun Khanna,Shoba Ranganathan
#t2009
#cBMC Bioinformatics
#index2850117
#% 
#!
  
#*Modular composition predicts kinase/substrate interactions.
#@Yichuan Liu,Aydin Tozeren
#t2010
#cBMC Bioinformatics
#index2850504
#% 
#!
  
#*Site-specific impacts on gene expression and behavior in fathead minnows () exposed to streams adjacent to sewage treatment plants.
#@Natàlia Garcia-Reyero,Ira R. Adelman,Dalma Martinovic,Li Liu,Nancy D. Denslow
#t2009
#cBMC Bioinformatics
#index2850100
#% 
#!
  
#*Developing optimal input design strategies in cancer systems biology with applications to microfluidic device engineering.
#@Filippo Menolascina,Domenico Bellomo,Thomas Maiwald,Vitoantonio Bevilacqua,Caterina Ciminelli,Angelo Paradiso,Stefania Tommasi
#t2009
#cBMC Bioinformatics
#index2850119
#% 
#!
  
#*Modeling lymphocyte homing and encounters in lymph nodes.
#@Valentina Baldazzi,Paola Paci,Massimo Bernaschi,Filippo Castiglione
#t2009
#cBMC Bioinformatics
#index2849971
#% 
#!
  
#*BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server.
#@Bing Xiong,Jie Wu,David L. Burk,Mengzhu Xue,Hualiang Jiang,Jingkang Shen
#t2010
#cBMC Bioinformatics
#index2850257
#% 
#!
  
#*Knowledge-guided gene ranking by coordinative component analysis.
#@Chen Wang,Jianhua Xuan,Huai Li,Yue Wang,Ming Zhan,Eric P. Hoffman,Robert Clarke
#t2010
#cBMC Bioinformatics
#index2850495
#% 
#!
  
#*Characterization of phylogenetic networks with NetTest.
#@Miguel Arenas,Mateus Patricio,David Posada,Gabriel Valiente
#t2010
#cBMC Bioinformatics
#index2850239
#% 
#!
  
#*NeMo: Network Module identification in Cytoscape.
#@Corban G. Rivera,Rachit Vakil,Joel S. Bader
#t2010
#cBMC Bioinformatics
#index2850560
#% 
#!
  
#*BayesMotif: de novo protein sorting motif discovery from impure datasets.
#@Jianjun Hu,Fan Zhang
#t2010
#cBMC Bioinformatics
#index2850598
#% 
#!
  
#*Identifying overrepresented concepts in gene lists from literature: a statistical approach based on Poisson mixture model.
#@Xin He,Moushumi Sen Sarma,Xu Ling,Brant W. Chee,Chengxiang Zhai,Bruce R. Schatz
#t2010
#cBMC Bioinformatics
#index2850430
#% 
#!
  
#*Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements.
#@Jakub Mieczkowski,Magdalena E. Tyburczy,Michal Dabrowski,Piotr Pokarowski
#t2010
#cBMC Bioinformatics
#index2850275
#% 
#!
  
#*Infection in the intensive care unit alters physiological networks.
#@Adam D. Grossman,Mitchell J. Cohen,Geoffrey T. Manley,Atul J. Butte
#t2009
#cBMC Bioinformatics
#index2850127
#% 
#!
  
#*TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays.
#@Henrik Bengtsson,Pierre Neuvial,Terence P. Speed
#t2010
#cBMC Bioinformatics
#index2850442
#% 
#!
  
#*Adaptive coarse-grained Monte Carlo simulation of reaction and diffusion dynamics in heterogeneous plasma membranes.
#@Stuart Collins,Michail Stamatakis,Dionisios G. Vlachos
#t2010
#cBMC Bioinformatics
#index2850449
#% 
#!
  
#*BioGateway: a semantic systems biology tool for the life sciences.
#@Erick Antezana,Ward Blondé,Mikel Egaña,Alistair Rutherford,Robert Stevens,Bernard De Baets,Vladimir Mironov,Martin Kuiper
#t2009
#cBMC Bioinformatics
#index2850146
#% 
#!
  
#*A biosegmentation benchmark for evaluation of bioimage analysis methods.
#@Elisa Drelie Gelasca,Boguslaw Obara,Dmitri G. Fedorov,Kristian Kvilekval,B. S. Manjunath
#t2009
#cBMC Bioinformatics
#index2849944
#% 
#!
  
#*miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature.
#@Haroon Naeem,Robert Küffner,Gergely Csaba,Ralf Zimmer
#t2010
#cBMC Bioinformatics
#index2850332
#% 
#!
  
#*Visualization of large microarray experiments with space maps.
#@Nils Gehlenborg,Alvis Brazma
#t2009
#cBMC Bioinformatics
#index2850052
#% 
#!
  
#*SAMPLEX: Automatic mapping of perturbed and unperturbed regions of proteins and complexes.
#@Mickaël Krzeminski,Karine Loth,Rolf Boelens,Alexandre M. J. J. Bonvin
#t2010
#cBMC Bioinformatics
#index2850416
#% 
#!
  
#*Quantitative model for inferring dynamic regulation of the tumour suppressor gene p53.
#@Junbai Wang,Tianhai Tian
#t2010
#cBMC Bioinformatics
#index2850191
#% 
#!
  
#*Context-driven discovery of gene cassettes in mobile integrons using a computational grammar.
#@Guy Tsafnat,Enrico W. Coiera,Sally R. Partridge,Jaron Schaeffer,Jon R. Iredell
#t2009
#cBMC Bioinformatics
#index2849980
#% 
#!
  
#*A new permutation strategy of pathway-based approach for genome-wide association study.
#@Yan-Fang Guo,Jian Li,Yuan Chen,Li-Shu Zhang,Hong-Wen Deng
#t2009
#cBMC Bioinformatics
#index2849897
#% 
#!
  
#*SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale.
#@Tamás Nepusz,Rajkumar Sasidharan,Alberto Paccanaro
#t2010
#cBMC Bioinformatics
#index2850413
#% 
#!
  
#*Exploiting structural and topological information to improve prediction of RNA-protein binding sites.
#@Stefan Maetschke,Zheng Yuan
#t2009
#cBMC Bioinformatics
#index2849933
#% 
#!
  
#*Data mining of enzymes using specific peptides.
#@Uri Weingart,Yair Lavi,David Horn
#t2009
#cBMC Bioinformatics
#index2849989
#% 
#!
  
#*From IMGT-ONTOLOGY to IMGT/LIGMotif: the IMGTstandardized approach for immunoglobulin and T cell receptor gene identification and description in large genomic sequences.
#@Jérôme Lane,Patrice Duroux,Marie-Paule Lefranc
#t2010
#cBMC Bioinformatics
#index2850339
#% 
#!
  
#*Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom.
#@Zhanyou Xu,Dandan Zhang,Jun Hu,Xin Zhou,Xia Ye,Kristen L. Reichel,Nathan R. Stewart,Ryan D. Syrenne,Xiaohan Yang,Peng Gao,Weibing Shi,Crissa Doeppke,Robert W. Sykes,Jason N. Burris,Joseph J. Bozell,(Max) Zong-Ming Cheng,Douglas G. Hayes,Nicole Labbe,Mark Davis,C. Neal Stewart Jr.,Joshua S. Yuan
#t2009
#cBMC Bioinformatics
#index2850083
#% 
#!
  
#*Genome scale prediction of substrate specificity for acyl adenylate superfamily of enzymes based on active site residue profiles.
#@Pankaj Khurana,Rajesh S. Gokhale,Debasisa Mohanty
#t2010
#cBMC Bioinformatics
#index2850182
#% 
#!
  
#*siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect.
#@Yuki Naito,Jun Yoshimura,Shinichi Morishita,Kumiko Ui-Tei
#t2009
#cBMC Bioinformatics
#index2850017
#% 
#!
  
#*svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identification.
#@Wensheng Zhang,Andrea Edwards,Wei Fan,Dongxiao Zhu,Kun Zhang
#t2010
#cBMC Bioinformatics
#index2850375
#% 
#!
  
#*Using genomic signatures for HIV-1 sub-typing.
#@Aridaman Pandit,Somdatta Sinha
#t2010
#cBMC Bioinformatics
#index2850581
#% 
#!
  
#*AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses.
#@Surendra Kumar,Åsmund Skjæveland,Russell J. S. Orr,Pål Enger,Torgeir Ruden,Bjørn-Helge Mevik,Fabien Burki,Andreas Botnen,Kamran Shalchian-Tabrizi
#t2009
#cBMC Bioinformatics
#index2849942
#% 
#!
  
#*miRMaid: a unified programming interface for microRNA data resources.
#@Anders Jacobsen,Anders Krogh,Sakari Kauppinen,Morten Lindow
#t2010
#cBMC Bioinformatics
#index2850201
#% 
#!
  
#*VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences.
#@Hiroshi Mori,Fumito Maruyama,Ken Kurokawa
#t2010
#cBMC Bioinformatics
#index2850222
#% 
#!
  
#*Structural and functional-annotation of an equine whole genome oligoarray.
#@Lauren A. Bright,Shane C. Burgess,Bhanu Chowdhary,Cyprianna E. Swiderski,Fiona M. McCarthy
#t2009
#cBMC Bioinformatics
#index2850164
#% 
#!
  
#*Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach.
#@Marc Bailly-Bechet,Alfredo Braunstein,Andrea Pagnani,Martin Weigt,Riccardo Zecchina
#t2010
#cBMC Bioinformatics
#index2850237
#% 
#!
  
#*A benchmark for statistical microarray data analysis that preserves actual biological and technical variance.
#@Benoît De Hertogh,Bertrand De Meulder,Fabrice Berger,Michael Pierre,Eric Bareke,Anthoula Gaigneaux,Eric Depiereux
#t2010
#cBMC Bioinformatics
#index2850311
#% 
#!
  
#*Granger causality vs. dynamic Bayesian network inference: a comparative study.
#@Cunlu Zou,Katherine J. Denby,Jianfeng Feng
#t2009
#cBMC Bioinformatics
#index2849923
#% 
#!
  
#*A novel approach to simulate gene-environment interactions in complex diseases.
#@Roberto Amato,Michele Pinelli,Daniel D'Andrea,Gennaro Miele,Mario Nicodemi,Giancarlo Raiconi,Sergio Cocozza
#t2010
#cBMC Bioinformatics
#index2850229
#% 
#!
  
#*Extracting consistent knowledge from highly inconsistent cancer gene data sources.
#@Xue Gong,Ruihong Wu,Yuannv Zhang,Wenyuan Zhao,Lixin Cheng,Yunyan Gu,Lin Zhang,Jing Wang,Jing Zhu,Zheng Guo
#t2010
#cBMC Bioinformatics
#index2850608
#% 
#!
  
#*miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression.
#@Wei-Chi Wang,Feng-Mao Lin,Wen-Chi Chang,Kuan-Yu Lin,Hsien-Da Huang,Na-Sheng Lin
#t2009
#cBMC Bioinformatics
#index2850007
#% 
#!
  
#*Statistical method on nonrandom clustering with application to somatic mutations in cancer.
#@Jingjing Ye,Adam Pavlícek,Elizabeth A. Lunney,Paul A. Rejto,Chi-Hse Teng
#t2010
#cBMC Bioinformatics
#index2850498
#% 
#!
  
#*Bias correction and Bayesian analysis of aggregate counts in SAGE libraries.
#@Russell L. Zaretzki,Michael A. Gilchrist,William M. Briggs,Artin Armagan
#t2010
#cBMC Bioinformatics
#index2850406
#% 
#!
  
#*Towards a data publishing framework for primary biodiversity data: challenges and potentials for the biodiversity informatics community.
#@Vishwas Chavan,Peter Ingwersen
#t2009
#cBMC Bioinformatics
#index2850053
#% 
#!
  
#*Moara: a Java library for extracting and normalizing gene and protein mentions.
#@Mariana L. Neves,José María Carazo,Alberto D. Pascual-Montano
#t2010
#cBMC Bioinformatics
#index2850203
#% 
#!
  
#*Identifying differentially methylated genes using mixed effect and generalized least square models.
#@Shuying Sun,Pearlly Yan,Tim Hui-Ming Huang,Shili Lin
#t2009
#cBMC Bioinformatics
#index2849948
#% 
#!
  
#*Correction: Disease candidate gene identification and prioritization using protein interaction networks.
#@Jing Chen,Bruce J. Aronow,Anil G. Jegga
#t2009
#cBMC Bioinformatics
#index2849953
#% 
#!
  
#*Analysis of AML genes in dysregulated molecular networks.
#@Eunjung Lee,Hyunchul Jung,Predrag Radivojac,Jong-Won Kim,Doheon Lee
#t2009
#cBMC Bioinformatics
#index2850074
#% 
#!
  
#*Exploring biological network structure with clustered random networks.
#@Shweta Bansal,Shashank Khandelwal,Lauren Ancel Meyers
#t2009
#cBMC Bioinformatics
#index2850026
#% 
#!
  
#*Selection of optimal reference genes for normalization in quantitative RT-PCR.
#@Inna Chervoneva,Yanyan Li,Stephanie Schulz,Sean Croker,Chantell Wilson,Scott A. Waldman,Terry Hyslop
#t2010
#cBMC Bioinformatics
#index2850368
#% 
#!
  
#*TIde: a software for the systematic scanning of drug targets in kinetic network models.
#@Marvin Schulz,Barbara M. Bakker,Edda Klipp
#t2009
#cBMC Bioinformatics
#index2850016
#% 
#!
  
#*TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach.
#@Pietro Zoppoli,Sandro Morganella,Michele Ceccarelli
#t2010
#cBMC Bioinformatics
#index2850505
#% 
#!
  
#*Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images.
#@Pekka Ruusuvuori,Tarmo Äijö,Sharif Chowdhury,Cecilia Garmendia-Torres,Jyrki Selinummi,Mirko Birbaumer,Aimée M. Dudley,Lucas Pelkmans,Olli Yli-Harja
#t2010
#cBMC Bioinformatics
#index2850423
#% 
#!
  
#*Illumina WG-6 BeadChip strips should be normalized separately.
#@Wei Shi,Ashish Banerjee,Matthew E. Ritchie,Steve Gerondakis,Gordon K. Smyth
#t2009
#cBMC Bioinformatics
#index2849972
#% 
#!
  
#*Integrating functional genomics data using maximum likelihood based simultaneous component analysis.
#@Robert A. van den Berg,Iven Van Mechelen,Tom F. Wilderjans,Katrijn Van Deun,Henk A. L. Kiers,Age K. Smilde
#t2009
#cBMC Bioinformatics
#index2849852
#% 
#!
  
#*A parallel and incremental algorithm for efficient unique signature discovery on DNA databases.
#@Hsiao Ping Lee,Tzu-Fang Sheu,Chuan Yi Tang
#t2010
#cBMC Bioinformatics
#index2850256
#% 
#!
  
#*Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments.
#@Michael L. Sierk,Michael E. Smoot,Ellen J. Bass,William R. Pearson
#t2010
#cBMC Bioinformatics
#index2850396
#% 
#!
  
#*A robust method for estimating gene expression states using Affymetrix microarray probe level data.
#@Megu Ohtaki,Keiko Otani,Keiko Hiyama,Naomi Kamei,Kenichi Satoh,Eiso Hiyama
#t2010
#cBMC Bioinformatics
#index2850462
#% 
#!
  
#*BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature.
#@Guillermo de la Calle,Miguel García-Remesal,Stefano Chiesa,Diana de la Iglesia,Victor Maojo
#t2009
#cBMC Bioinformatics
#index2849991
#% 
#!
  
#*Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data.
#@Haruna Imamura,Nozomu Yachie,Rintaro Saito,Yasushi Ishihama,Masaru Tomita
#t2010
#cBMC Bioinformatics
#index2850385
#% 
#!
  
#*Phylogenetic analysis of modularity in protein interaction networks.
#@Sinan Erten,Xin Li,Gürkan Bebek,Jing Li,Mehmet Koyutürk
#t2009
#cBMC Bioinformatics
#index2849851
#% 
#!
  
#*Scratchpads: a data-publishing framework to build, share and manage information on the diversity of life.
#@Vincent S. Smith,Simon D. Rycroft,Kehan T. Harman,Ben Scott,David Roberts
#t2009
#cBMC Bioinformatics
#index2850118
#% 
#!
  
#*Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model.
#@Andrew J. Bordner,Hans D. Mittelmann
#t2010
#cBMC Bioinformatics
#index2850487
#% 
#!
  
#*Integrative modeling of transcriptional regulation in response to antirheumatic therapy.
#@Michael Hecker,Robert Hermann Goertsches,Robby Engelmann,Hans-Jürgen Thiesen,Reinhard Guthke
#t2009
#cBMC Bioinformatics
#index2849990
#% 
#!
  
#*Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences.
#@Marcin J. Mizianty,Lukasz A. Kurgan
#t2009
#cBMC Bioinformatics
#index2850024
#% 
#!
  
#*KA-SB: from data integration to large scale reasoning.
#@María del Mar Roldán García,Ismael Navas Delgado,Amine Kerzazi,Othmane Chniber,Joaquin J. Molina-Castro,José Francisco Aldana Montes
#t2009
#cBMC Bioinformatics
#index2850116
#% 
#!
  
#*Refining gene signatures: a Bayesian approach.
#@Amira Djebbari,Aurélie Labbe
#t2009
#cBMC Bioinformatics
#index2849998
#% 
#!
  
#*The gene expression atlas web server.
#@Ji He,Vagner A. Benedito,Mingyi Wang,Jeremy D. Murray,Patrick Xuechun Zhao,Yuhong Tang,Michael K. Udvardi
#t2009
#cBMC Bioinformatics
#index2850005
#% 
#!
  
#*Classification across gene expression microarray studies.
#@Andreas Buness,Markus Ruschhaupt,Ruprecht Kuner,Achim Tresch
#t2009
#cBMC Bioinformatics
#index2849860
#% 
#!
  
#*Computational prediction of type III secreted proteins from gram-negative bacteria.
#@Yang Yang,Jiayuan Zhao,Robyn L. Morgan,Wenbo Ma,Tao Jiang
#t2010
#cBMC Bioinformatics
#index2850541
#% 
#!
  
#*Transcriptional network classifiers.
#@Hsun-Hsien Chang,Marco Ramoni
#t2009
#cBMC Bioinformatics
#index2850136
#% 
#!
  
#*Binary image representation of a ligand binding site: its application to efficient sampling of a conformational ensemble.
#@Edon Sung,Sangsoo Kim,Whanchul Shin
#t2010
#cBMC Bioinformatics
#index2850247
#% 
#!
  
#*SeqRate: sequence-based protein folding type classification and rates prediction.
#@Guan Ning Lin,Zheng Wang,Dong Xu,Jianlin Cheng
#t2010
#cBMC Bioinformatics
#index2850571
#% 
#!
  
#*Multiconstrained gene clustering based on generalized projections.
#@Jia Zeng,Shanfeng Zhu,Alan Wee-Chung Liew,Hong Yan
#t2010
#cBMC Bioinformatics
#index2850358
#% 
#!
  
#*Predicting protein functions by relaxation labelling protein interaction network.
#@Pingzhao Hu,Hui Jiang,Andrew Emili
#t2010
#cBMC Bioinformatics
#index2850601
#% 
#!
  
#*Towards realistic benchmarks for multiple alignments of non-coding sequences.
#@Jaebum Kim,Saurabh Sinha
#t2010
#cBMC Bioinformatics
#index2850302
#% 
#!
  
#*Predicting MHC class I epitopes in large datasets.
#@Kirsten Roomp,Iris Antes,Thomas Lengauer
#t2010
#cBMC Bioinformatics
#index2850469
#% 
#!
  
#*Cgaln: fast and space-efficient whole-genome alignment.
#@Ryuichiro Nakato,Osamu Gotoh
#t2010
#cBMC Bioinformatics
#index2850265
#% 
#!
  
#*Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods.
#@Stefano Lise,Cédric Archambeau,Massimiliano Pontil,David T. Jones
#t2009
#cBMC Bioinformatics
#index2849983
#% 
#!
  
#*Facilitating functional annotation of chicken microarray data.
#@Teresia J. Buza,Ranjit Kumar,Cathy R. Gresham,Shane C. Burgess,Fiona M. McCarthy
#t2009
#cBMC Bioinformatics
#index2850092
#% 
#!
  
#*Classification of protein sequences by means of irredundant patterns.
#@Matteo Comin,Davide Verzotto
#t2010
#cBMC Bioinformatics
#index2850591
#% 
#!
  
#*Enhanced CellClassifier: a multi-class classification tool for microscopy images.
#@Benjamin Misselwitz,Gerhard Strittmatter,Balamurugan Periaswamy,Markus C. Schlumberger,Samuel Rout,Peter Horvath,Karol Kozak,Wolf-Dietrich Hardt
#t2010
#cBMC Bioinformatics
#index2850266
#% 
#!
  
#*Structure and function analysis of flexible alignment regions in proteins.
#@Walter Pirovano,Anneke van der Reijden,K. Anton Feenstra,Jaap Heringa
#t2009
#cBMC Bioinformatics
#index2850155
#% 
#!
  
#*YODA: Software to facilitate high-throughput analysis of chronological life span, growth rate, and survival in budding yeast.
#@Brady Olsen,Christopher J. Murakami,Matt Kaeberlein
#t2010
#cBMC Bioinformatics
#index2850405
#% 
#!
  
#*Properties and identification of antibiotic drug targets.
#@Tala Bakheet,Andrew J. Doig
#t2010
#cBMC Bioinformatics
#index2850376
#% 
#!
  
#*A comprehensive assessment of N-terminal signal peptides prediction methods.
#@Khar Heng Choo,Tin Wee Tan,Shoba Ranganathan
#t2009
#cBMC Bioinformatics
#index2850130
#% 
#!
  
#*WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomic analysis.
#@Fan Mo,Qun Mo,Yuanyuan Chen,David R. Goodlett,Leroy Hood,Gilbert S. Omenn,Song Li,Biaoyang Lin
#t2010
#cBMC Bioinformatics
#index2850523
#% 
#!
  
#*A user-centred evaluation framework for the Sealife semantic web browsers.
#@Helen Oliver,Gayo Diallo,Ed de Quincey,Dimitra Alexopoulou,Bianca Habermann,Patty Kostkova,Michael Schroeder,Simon Jupp,Khaled Khelif,Robert Stevens,Gawesh Jawaheer,Gemma Madle
#t2009
#cBMC Bioinformatics
#index2850142
#% 
#!
  
#*A close examination of double filtering with fold change and t test in microarray analysis.
#@Song Zhang,Jing Cao
#t2009
#cBMC Bioinformatics
#index2850031
#% 
#!
  
#*Modulation of p53 binding to MDM2: computational studies reveal important roles of Tyr100.
#@Shubhra Ghosh Dastidar,David P. Lane,Chandra S. Verma
#t2009
#cBMC Bioinformatics
#index2850101
#% 
#!
  
#*Genome rearrangements with duplications.
#@Martin Bader
#t2010
#cBMC Bioinformatics
#index2850534
#% 
#!
  
#*Integrating gene expression and GO classification for PCA by preclustering.
#@Jorn R. de Haan,Ester Piek,René C. van Schaik,Jacob de Vlieg,Susanne Bauerschmidt,Lutgarde M. C. Buydens,Ron Wehrens
#t2010
#cBMC Bioinformatics
#index2850351
#% 
#!
  
#*Nonlinear preprocessing method for detecting peaks from gas chromatograms.
#@Byonghyo Shim,Hyeyoung Min,Sungroh Yoon
#t2009
#cBMC Bioinformatics
#index2850038
#% 
#!
  
#*A generic algorithm for layout of biological networks.
#@Falk Schreiber,Tim Dwyer,Kim Marriott,Michael Wybrow
#t2009
#cBMC Bioinformatics
#index2849865
#% 
#!
  
#*A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles.
#@Chia-Hao Chin,Shu-Hwa Chen,Chin-Wen Ho,Ming-Tat Ko,Chung-Yen Lin
#t2010
#cBMC Bioinformatics
#index2850580
#% 
#!
  
#*Protein local 3D structure prediction by Super Granule Support Vector Machines (Super GSVM).
#@Bernard Chen,Matthew Johnson
#t2009
#cBMC Bioinformatics
#index2850109
#% 
#!
  
#*WATERS: a Workflow for the Alignment, Taxonomy, and Ecology of Ribosomal Sequences.
#@Amber L. Hartman,Sean Riddle,Timothy M. McPhillips,Bertram Ludäscher,Jonathan A. Eisen
#t2010
#cBMC Bioinformatics
#index2850238
#% 
#!
  
#*The implementation of e-learning tools to enhance undergraduate bioinformatics teaching and learning: a case study in the National University of Singapore.
#@Shen Jean Lim,Asif Mohammad Khan,Mark De Silva,Kuan Siong Lim,Yongli Hu,Chay Hoon Tan,Tin Wee Tan
#t2009
#cBMC Bioinformatics
#index2850073
#% 
#!
  
#*Active learning for human protein-protein interaction prediction.
#@Thahir P. Mohamed,Jaime G. Carbonell,Madhavi Ganapathiraju
#t2010
#cBMC Bioinformatics
#index2850578
#% 
#!
  
#*Discovering multiple realistic TFBS motifs based on a generalized model.
#@Tak-Ming Chan,Gang Li,Kwong-Sak Leung,Kin-Hong Lee
#t2009
#cBMC Bioinformatics
#index2849955
#% 
#!
  
#*Regression applied to protein binding site prediction and comparison with classification.
#@Joachim Giard,Jérôme Ambroise,Jean-Luc Gala,Benoît Macq
#t2009
#cBMC Bioinformatics
#index2849962
#% 
#!
  
#*dictyExpress: a gene expression database with an explorative data analysis web-based interface.
#@Gregor Rot,Anup Parikh,Tomaz Curk,Adam Kuspa,Gad Shaulsky,Blaz Zupan
#t2009
#cBMC Bioinformatics
#index2849977
#% 
#!
  
#*Genephony: a knowledge management tool for genome-wide research.
#@Angelo Nuzzo,Alberto Riva
#t2009
#cBMC Bioinformatics
#index2850043
#% 
#!
  
#*Gene set enrichment meta-learning analysis: next- generation sequencing versus microarrays.
#@Gregor Stiglic,Mateja Bajgot,Peter Kokol
#t2010
#cBMC Bioinformatics
#index2850293
#% 
#!
  
#*Phylogeny-guided interaction mapping in seven eukaryotes.
#@Janusz Dutkowski,Jerzy Tiuryn
#t2009
#cBMC Bioinformatics
#index2849874
#% 
#!
  
#*ICC-CLASS: isotopically-coded cleavable crosslinking analysis software suite.
#@Evgeniy V. Petrotchenko,Christoph H. Borchers
#t2010
#cBMC Bioinformatics
#index2850212
#% 
#!
  
#*Analysis and comparison of very large metagenomes with fast clustering and functional annotation.
#@Weizhong Li
#t2009
#cBMC Bioinformatics
#index2849984
#% 
#!
  
#*sdef: an R package to synthesize lists of significant features in related experiments.
#@Marta Blangiardo,Alberto Cassese,Sylvia Richardson
#t2010
#cBMC Bioinformatics
#index2850320
#% 
#!
  
#*Between proteins and phenotypes: annotation and interpretation of mutations.
#@Christopher J. O. Baker,Dietrich Rebholz-Schuhmann
#t2009
#cBMC Bioinformatics
#index2850062
#% 
#!
  
#*A high-throughput sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.
#@Chongle Pan,Byung-Hoon Park,William H. McDonald,Patricia A. Carey,Jillian F. Banfield,Nathan Verberkmoes,Robert L. Hettich,Nagiza F. Samatova
#t2010
#cBMC Bioinformatics
#index2850431
#% 
#!
  
#*GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction.
#@Yao Yu,Kang Tu,SiYuan Zheng,Yun Li,Guohui Ding,Jie Ping,Pei Hao,Yixue Li
#t2009
#cBMC Bioinformatics
#index2849997
#% 
#!
  
#*Deterministic Effects Propagation Networks for reconstructing protein signaling networks from multiple interventions.
#@Holger Fröhlich,Özgür Sahin,Dorit Arlt,Christian Bender,Tim Beißbarth
#t2009
#cBMC Bioinformatics
#index2849956
#% 
#!
  
#*Reconstructing nonlinear dynamic models of gene regulation using stochastic sampling.
#@Johanna Mazur,Daniel Ritter,Gerhard Reinelt,Lars Kaderali
#t2009
#cBMC Bioinformatics
#index2849927
#% 
#!
  
#*Spatio-structural granularity of biological material entities.
#@Lars Vogt
#t2010
#cBMC Bioinformatics
#index2850480
#% 
#!
  
#*Quantitative comparison of microarray experiments with published leukemia related gene expression signatures.
#@Hans-Ulrich Klein,Christian Ruckert,Alexander Kohlmann,Lars Bullinger,Christian Thiede,Torsten Haferlach,Martin Dugas
#t2009
#cBMC Bioinformatics
#index2849898
#% 
#!
  
#*New decoding algorithms for Hidden Markov Models using distance measures on labellings.
#@Daniel G. Brown,Jakub Truszkowski
#t2010
#cBMC Bioinformatics
#index2850470
#% 
#!
  
#*A parameter-adaptive dynamic programming approach for inferring cophylogenies.
#@Daniel Merkle,Martin Middendorf,Nicolas Wieseke
#t2010
#cBMC Bioinformatics
#index2850552
#% 
#!
  
#*A statistical method for excluding non-variable CpG sites in high-throughput DNA methylation profiling.
#@Hailong Meng,Andrew R. Joyce,Daniel E. Adkins,Priyadarshi Basu,Yankai Jia,Guoya Li,Tapas K. Sengupta,Barbara K. Zedler,Edward Lenn Murrelle,Edwin J. C. G. van den Oord
#t2010
#cBMC Bioinformatics
#index2850479
#% 
#!
  
#*Reconstructing genome trees of prokaryotes using overlapping genes.
#@Chih-Hsien Cheng,Chung-Han Yang,Hsien-Tai Chiu,Chin Lung Lu
#t2010
#cBMC Bioinformatics
#index2850221
#% 
#!
  
#*An empirical Bayesian approach for model-based inference of cellular signaling networks.
#@David J. Klinke II
#t2009
#cBMC Bioinformatics
#index2849884
#% 
#!
  
#*Structural fragment clustering reveals novel structural and functional motifs in -helical transmembrane proteins.
#@Annalisa Marsico,Andreas Henschel,Christof Winter,Anne Tuukkanen,Boris Vassilev,Kerstin Scheubert,Michael Schroeder
#t2010
#cBMC Bioinformatics
#index2850241
#% 
#!
  
#*TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses.
#@Ben C. Stöver,Kai F. Müller
#t2010
#cBMC Bioinformatics
#index2850301
#% 
#!
  
#*GoWeb: a semantic search engine for the life science web.
#@Heiko Dietze,Michael Schroeder
#t2009
#cBMC Bioinformatics
#index2850163
#% 
#!
  
#*Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics.
#@Matteo Re,Graziano Pesole,David Stephen Horner
#t2009
#cBMC Bioinformatics
#index2849934
#% 
#!
  
#*EDGE: A web-based solution for management and analysis of Agilent two color microarray experiments.
#@Aaron L. Vollrath,Adam A. Smith,Mark Craven,Christopher A. Bradfield
#t2009
#cBMC Bioinformatics
#index2849941
#% 
#!
  
#*Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior.
#@Yohan Kim,John Sidney,Clemencia Pinilla,Alessandro Sette,Björn Peters
#t2009
#cBMC Bioinformatics
#index2849992
#% 
#!
  
#*Metamotifs - a generative model for building families of nucleotide position weight matrices.
#@Matias Piipari,Thomas A. Down,Tim J. P. Hubbard
#t2010
#cBMC Bioinformatics
#index2850230
#% 
#!
  
#*Evolutionary rates at codon sites may be used to align sequences and infer protein domain function.
#@Pierre M. Durand,Scott Hazelhurst,Theresa L. Coetzer
#t2010
#cBMC Bioinformatics
#index2850248
#% 
#!
  
#*Efficient protein alignment algorithm for protein search.
#@Zaixin Lu,Zhiyu Zhao,Bin Fu
#t2010
#cBMC Bioinformatics
#index2850561
#% 
#!
  
#*DraGnET: Software for storing, managing and analyzing annotated draft genome sequence data.
#@Stacy Duncan,Ruchita Sirkanungo,Leslie Miller,Gregory J. Phillips
#t2010
#cBMC Bioinformatics
#index2850317
#% 
#!
  
#*Usefulness and limitations of dK random graph models to predict interactions and functional homogeneity in biological networks under a pseudo-likelihood parameter estimation approach.
#@Wenhui Wang,Juan Nunez-Iglesias,Yihui Luan,Fengzhu Sun
#t2009
#cBMC Bioinformatics
#index2849905
#% 
#!
  
#*Exploring complex miRNA-mRNA interactions with Bayesian networks by splitting-averaging strategy.
#@Bing Liu,Jiuyong Li,Anna Tsykin,Lin Liu,Arti B. Gaur,Gregory J. Goodall
#t2009
#cBMC Bioinformatics
#index2849920
#% 
#!
  
#*Core stemness mechanisms revealed through homology.
#@Martina Koeva,E. Camilla Forsberg,Joshua M. Stuart
#t2009
#cBMC Bioinformatics
#index2850156
#% 
#!
  
#*Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP.
#@Troy Hawkins,Meghana Chitale,Daisuke Kihara
#t2010
#cBMC Bioinformatics
#index2850441
#% 
#!
  
#*Detection of characteristic sub pathway network for angiogenesis based on the comprehensive pathway network.
#@Yezhou Huang,Shao Li
#t2010
#cBMC Bioinformatics
#index2850544
#% 
#!
  
#*An integrative modular approach to systematically predict gene-phenotype associations.
#@Michael R. Mehan,Juan Nunez-Iglesias,Chao Dai,Michael S. Waterman,Xianghong Jasmine Zhou
#t2010
#cBMC Bioinformatics
#index2850570
#% 
#!
  
#*A conformal Bayesian network for classification of complex lineages.
#@Minoo Aminian,Amina Shabbeer,Kristin P. Bennett
#t2010
#cBMC Bioinformatics
#index2850590
#% 
#!
  
#*JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes.
#@Chunguang Liang,Alexander Schmid,María José López-Sánchez,Andres Moya,Roy Gross,Jörg Bernhardt,Thomas Dandekar
#t2009
#cBMC Bioinformatics
#index2849913
#% 
#!
  
#*An optimized TOPS+ comparison method for enhanced TOPS models.
#@Mallika Veeramalai,David Gilbert,Gabriel Valiente
#t2010
#cBMC Bioinformatics
#index2850340
#% 
#!
  
#*poolMC: Smart pooling of mRNA samples in microarray experiments.
#@Raghunandan M. Kainkaryam,Angela Bruex,Anna C. Gilbert,John Schiefelbein,Peter J. Woolf
#t2010
#cBMC Bioinformatics
#index2850172
#% 
#!
  
#*Interaction prediction and classification of PDZ domains.
#@Sibel Kalyoncu,Ozlem Keskin,Attila Gürsoy
#t2010
#cBMC Bioinformatics
#index2850506
#% 
#!
  
#*Error margin analysis for feature gene extraction.
#@Chi Kin Chow,Hai Long Zhu,Jessica Lacy,Winston Patrick Kuo
#t2010
#cBMC Bioinformatics
#index2850284
#% 
#!
  
#*PoGO: Prediction of Gene Ontology terms for fungal proteins.
#@Jaehee Jung,Gangman Yi,Serenella A. Sukno,Michael R. Thon
#t2010
#cBMC Bioinformatics
#index2850310
#% 
#!
  
#*Integration of open access literature into the RCSB Protein Data Bank using BioLit.
#@Andreas Prlic,Marco A. Martinez,Dimitris Dimitropoulos,Bojan Beran,Benjamin T. Yukich,Peter W. Rose,Philip E. Bourne,J. Lynn Fink
#t2010
#cBMC Bioinformatics
#index2850234
#% 
#!
  
#*The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services.
#@Martijn P. van Iersel,Alexander R. Pico,Thomas Kelder,Jianjiong Gao,Isaac Ho,Kristina Hanspers,Bruce R. Conklin,Chris T. A. Evelo
#t2010
#cBMC Bioinformatics
#index2850515
#% 
#!
  
#*Genome-wide sequence-based prediction of peripheral proteins using a novel semi-supervised learning technique.
#@Nitin Bhardwaj,Mark Gerstein,Hui Lu
#t2010
#cBMC Bioinformatics
#index2850542
#% 
#!
  
#*PPLook: an automated data mining tool for protein-protein interaction.
#@Shao-Wu Zhang,Yao-Jun Li,Li Xia,Quan Pan
#t2010
#cBMC Bioinformatics
#index2850450
#% 
#!
  
#*Uncovering transcriptional interactions via an adaptive fuzzy logic approach.
#@Cheng-Long Chuang,Kenneth Hung,Chung-Ming Chen,Grace S. Shieh
#t2009
#cBMC Bioinformatics
#index2849969
#% 
#!
  
#*Genome-wide estimation of firing efficiencies of origins of DNA replication from time-course copy number variation data.
#@Huaien Luo,Juntao Li,Majid Eshaghi,Jianhua Liu,R. Krishna Murthy Karuturi
#t2010
#cBMC Bioinformatics
#index2850414
#% 
#!
  
#*A permutation-based multiple testing method for time-course microarray experiments.
#@Insuk Sohn,Kouros Owzar,Stephen L. George,Sujong Kim,Sin-Ho Jung
#t2009
#cBMC Bioinformatics
#index2849891
#% 
#!
  
#*FastTagger: an efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium.
#@Guimei Liu,Yue Wang,Limsoon Wong
#t2010
#cBMC Bioinformatics
#index2850478
#% 
#!
  
#*A highly efficient multi-core algorithm for clustering extremely large datasets.
#@Johann M. Kraus,Hans A. Kestler
#t2010
#cBMC Bioinformatics
#index2850367
#% 
#!
  
#*Modelling p-value distributions to improve theme-driven survival analysis of cancer transcriptome datasets.
#@Esteban Czwan,Benedikt Brors,David Kipling
#t2010
#cBMC Bioinformatics
#index2850350
#% 
#!
  
#*MapMi: automated mapping of microRNA loci.
#@José Afonso Guerra-Assunção,Anton J. Enright
#t2010
#cBMC Bioinformatics
#index2850324
#% 
#!
  
#*Correcting for the effects of natural abundance in stable isotope resolved metabolomics experiments involving ultra-high resolution mass spectrometry.
#@Hunter N. B. Moseley
#t2010
#cBMC Bioinformatics
#index2850516
#% 
#!
  
#*Evaluation of fecal mRNA reproducibility via a marginal transformed mixture modeling approach.
#@Nysia I. George,Joanne R. Lupton,Nancy D. Turner,Robert S. Chapkin,Laurie A. Davidson,Naisyin Wang
#t2010
#cBMC Bioinformatics
#index2850303
#% 
#!
  
#*Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data.
#@Mike L. Smith,Mark J. Dunning,Simon Tavaré,Andy G. Lynch
#t2010
#cBMC Bioinformatics
#index2850199
#% 
#!
  
#*Gene bi-targeting by viral and human miRNAs.
#@Isana Veksler-Lublinsky,Yonat Shemer-Avni,Klara Kedem,Michal Ziv-Ukelson
#t2010
#cBMC Bioinformatics
#index2850178
#% 
#!
  
#*Global haplotype partitioning for maximal associated SNP pairs.
#@Ali Katanforoush,Mehdi Sadeghi,Hamid Pezeshk,Elahe Elahi
#t2009
#cBMC Bioinformatics
#index2849970
#% 
#!
  
#*Clinical bioinformatics for complex disorders: a schizophrenia case study.
#@Emanuel Schwarz,F. Markus Leweke,Sabine Bahn,Pietro Liò
#t2009
#cBMC Bioinformatics
#index2850135
#% 
#!
  
#*Bayesian modeling of ChIP-chip data using latent variables.
#@Mingqi Wu,Faming Liang,Yanan Tian
#t2009
#cBMC Bioinformatics
#index2850023
#% 
#!
  
#*GLIDERS - A web-based search engine for genome-wide linkage disequilibrium between HapMap SNPs.
#@Robert Lawrence,Aaron G. Day-Williams,Richard Mott,John Broxholme,Lon R. Cardon,Eleftheria Zeggini
#t2009
#cBMC Bioinformatics
#index2849857
#% 
#!
  
#*Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset.
#@Qianqian Zhu,Jeffrey C. Miecznikowski,Marc S. Halfon
#t2010
#cBMC Bioinformatics
#index2850352
#% 
#!
  
#*Gene prioritization and clustering by multi-view text mining.
#@Shi Yu,Léon-Charles Tranchevent,Bart De Moor,Yves Moreau
#t2010
#cBMC Bioinformatics
#index2850267
#% 
#!
  
#*ProbABEL package for genome-wide association analysis of imputed data.
#@Yurii S. Aulchenko,Maksim V. Struchalin,Cornelia M. van Duijn
#t2010
#cBMC Bioinformatics
#index2850235
#% 
#!
  
#*CONAN: copy number variation analysis software for genome-wide association studies.
#@Lukas Forer,Sebastian Schönherr,Hansi Weißensteiner,Florian Haider,Thomas Kluckner,Christian Gieger,H.-Erich Wichmann,Günther Specht,Florian Kronenberg,Anita Kloss-Brandstätter
#t2010
#cBMC Bioinformatics
#index2850331
#% 
#!
  
#*Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis.
#@Henning Redestig,Miyako Kusano,Atsushi Fukushima,Fumio Matsuda,Kazuki Saito,Masanori Arita
#t2010
#cBMC Bioinformatics
#index2850205
#% 
#!
  
#*Correlating gene and protein expression data using Correlated Factor Analysis.
#@Chuen Seng Tan,Agus Salim,Alexander Ploner,Janne Lehtiö,Kee Seng Chia,Yudi Pawitan
#t2009
#cBMC Bioinformatics
#index2849926
#% 
#!
  
#*Paired-end read length lower bounds for genome re-sequencing.
#@Rayan Chikhi,Dominique Lavenier
#t2009
#cBMC Bioinformatics
#index2850157
#% 
#!
  
#*Comparative performances of DNA barcoding across insect orders.
#@Massimiliano Virgilio,Thierry Backeljau,Bruno Nevado,Marc De Meyer
#t2010
#cBMC Bioinformatics
#index2850192
#% 
#!
  
#*Optimizing substitution matrix choice and gap parameters for sequence alignment.
#@Robert C. Edgar
#t2009
#cBMC Bioinformatics
#index2849868
#% 
#!
  
#*A stochastic context free grammar based framework for analysis of protein sequences.
#@Witold Dyrka,Jean-Christophe Nebel
#t2009
#cBMC Bioinformatics
#index2850037
#% 
#!
  
#*Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia.
#@Xinan Yang,Yong Huang,James L. Chen,Jianming Xie,Xiao Sun,Yves A. Lussier
#t2009
#cBMC Bioinformatics
#index2850129
#% 
#!
  
#*MTRAP: Pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of residues.
#@Toshihide Hara,Keiko Sato,Masanori Ohya
#t2010
#cBMC Bioinformatics
#index2850524
#% 
#!
  
#*Reuse of terminological resources for efficient ontological engineering in Life Sciences.
#@Antonio Jimeno-Yepes,Ernesto Jiménez-Ruiz,Rafael Berlanga Llavori,Dietrich Rebholz-Schuhmann
#t2009
#cBMC Bioinformatics
#index2850149
#% 
#!
  
#*Extraction, integration and analysis of alternative splicing and protein structure distributed information.
#@Matteo D'Antonio,Marco Masseroli
#t2009
#cBMC Bioinformatics
#index2850115
#% 
#!
  
#*Assessing the druggability of protein-protein interactions by a supervised machine-learning method.
#@Nobuyoshi Sugaya,Kazuyoshi Ikeda
#t2009
#cBMC Bioinformatics
#index2849978
#% 
#!
  
#*Detecting purely epistatic multi-locus interactions by an omnibus permutation test on ensembles of two-locus analyses.
#@Waranyu Wongseree,Anunchai Assawamakin,Theera Piroonratana,Saravudh Sinsomros,Chanin Limwongse,Nachol Chaiyaratana
#t2009
#cBMC Bioinformatics
#index2849904
#% 
#!
  
#*MPRAP: An accessibility predictor for alpha-helical transmembrane proteins that performs well inside and outside the membrane.
#@Kristoffer Illergard,Simone Callegari,Arne Elofsson
#t2010
#cBMC Bioinformatics
#index2850429
#% 
#!
  
#*Knowledge-driven enhancements for task composition in bioinformatics.
#@Karen Sutherland,Kenneth McLeod,Gus Ferguson,Albert Burger
#t2009
#cBMC Bioinformatics
#index2850088
#% 
#!
  
#*Construction of an annotated corpus to support biomedical information extraction.
#@Paul Thompson,Syed A. Iqbal,John McNaught,Sophia Ananiadou
#t2009
#cBMC Bioinformatics
#index2849871
#% 
#!
  
#*BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions.
#@Jan Schellenberger,Junyoung O. Park,Tom M. Conrad,Bernhard O. Palsson
#t2010
#cBMC Bioinformatics
#index2850609
#% 
#!
  
#*Semi-automated screening of biomedical citations for systematic reviews.
#@Byron C. Wallace,Thomas A. Trikalinos,Joseph Lau,Carla E. Brodley,Christopher H. Schmid
#t2010
#cBMC Bioinformatics
#index2850461
#% 
#!
  
#*An eScience-Bayes strategy for analyzing omics data.
#@Martin Eklund,Ola Spjuth,Jarl E. S. Wikberg
#t2010
#cBMC Bioinformatics
#index2850288
#% 
#!
  
#*Application of kernel functions for accurate similarity search in large chemical databases.
#@Xiaohong Wang,Jun Huan,Aaron M. Smalter,Gerald H. Lushington
#t2010
#cBMC Bioinformatics
#index2850533
#% 
#!
  
#*Haplotype allelic classes for detecting ongoing positive selection.
#@Julie Hussin,Philippe Nadeau,Jean-François Lefebvre,Damian Labuda
#t2010
#cBMC Bioinformatics
#index2850262
#% 
#!
  
#*Stratification of co-evolving genomic groups using ranked phylogenetic profiles.
#@Shiri Freilich,Leon Goldovsky,Assaf Gottlieb,Eric Blanc,Sophia Tsoka,Christos A. Ouzounis
#t2009
#cBMC Bioinformatics
#index2849854
#% 
#!
  
#*Calling SNPs without a reference sequence.
#@Aakrosh Ratan,Yu Zhang,Vanessa M. Hayes,Stephan C. Schuster,Webb Miller
#t2010
#cBMC Bioinformatics
#index2850171
#% 
#!
  
#*AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number.
#@Aaron M. Newman,James B. Cooper
#t2010
#cBMC Bioinformatics
#index2850281
#% 
#!
  
#*Algorithms for locating extremely conserved elements in multiple sequence alignments.
#@Huei-Hun E. Tseng,Martin Tompa
#t2009
#cBMC Bioinformatics
#index2850006
#% 
#!
  
#*A pairwise residue contact area-based mean force potential for discrimination of native protein structure.
#@Shahriar Arab,Mehdi Sadeghi,Changiz Eslahchi,Hamid Pezeshk,Armita Sheari
#t2010
#cBMC Bioinformatics
#index2850274
#% 
#!
  
#*Googling DNA sequences on the World Wide Web.
#@Mehrdad Hajibabaei,Gregory A. C. Singer
#t2009
#cBMC Bioinformatics
#index2850095
#% 
#!
  
#*Simulation of a Petri net-based Model of the Terpenoid Biosynthesis Pathway.
#@Aliah Hazmah Hawari,Zeti-Azura Mohamed-Hussein
#t2010
#cBMC Bioinformatics
#index2850488
#% 
#!
  
#*Highlights from the 5International Society for Computational Biology Student Council Symposium at the 17Annual International Conference on Intelligent Systems for Molecular Biology and the 8European Conference on Computational Biology.
#@Thomas Abeel,Jeroen de Ridder,Lucia Peixoto
#t2009
#cBMC Bioinformatics
#index2850102
#% 
#!
  
#*JCoDA: a tool for detecting evolutionary selection.
#@Steven N. Steinway,Ruth Dannenfelser,Christopher D. Laucius,James E. Hayes,Sudhir Nayak
#t2010
#cBMC Bioinformatics
#index2850497
#% 
#!
  
#*Systematic calibration of a cell signaling network model.
#@Kyoung Ae Kim,Sabrina L. Spencer,John G. Albeck,John M. Burke,Peter K. Sorger,Suzanne Gaudet,Do Hyun Kim
#t2010
#cBMC Bioinformatics
#index2850255
#% 
#!
  
#*Predicting functional upstream open reading frames in .
#@Selpi,Christopher H. Bryant,Graham J. L. Kemp,Janeli Sarv,Erik Kristiansson,Per Sunnerhagen
#t2009
#cBMC Bioinformatics
#index2849947
#% 
#!
  
#*TassDB2 - A comprehensive database of subtle alternative splicing events.
#@Rileen Sinha,Thorsten Lenser,Niels Jahn,Ulrike Gausmann,Swetlana Friedel,Karol Szafranski,Klaus Huse,Philip Rosenstiel,Jochen Hampe,Stefan Schuster,Michael Hiller,Rolf Backofen,Matthias Platzer
#t2010
#cBMC Bioinformatics
#index2850296
#% 
#!
  
#*HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features.
#@Richard Tzong-Han Tsai,Po-Ting Lai,Hong-Jie Dai,Chi-Hsin Huang,Yue-Yang Bow,Yen-Ching Chang,Wen-Harn Pan,Wen-Lian Hsu
#t2009
#cBMC Bioinformatics
#index2850148
#% 
#!
  
#*PhenoFam-gene set enrichment analysis through protein structural information.
#@Maciej Paszkowski-Rogacz,Mikolaj Slabicki,M. Teresa Pisabarro,Frank Buchholz
#t2010
#cBMC Bioinformatics
#index2850213
#% 
#!
  
#*A weighted -gram method for glycan structure classification.
#@Limin Li,Wai-Ki Ching,Takako Yamaguchi,Kiyoko F. Aoki-Kinoshita
#t2010
#cBMC Bioinformatics
#index2850579
#% 
#!
  
#*High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH.
#@Florian Teichert,Jonas Minning,Ugo Bastolla,Markus Porto
#t2010
#cBMC Bioinformatics
#index2850500
#% 
#!
  
#*Learning an enriched representation from unlabeled data for protein-protein interaction extraction.
#@Yanpeng Li,Xiaohua Hu,Hongfei Lin,Zhihao Yang
#t2010
#cBMC Bioinformatics
#index2850599
#% 
#!
  
#*Bio-jETI: a framework for semantics-based service composition.
#@Anna-Lena Lamprecht,Tiziana Margaria,Bernhard Steffen
#t2009
#cBMC Bioinformatics
#index2850081
#% 
#!
  
#*On the use of resampling tests for evaluating statistical significance of binding-site co-occurrence.
#@David S. Huen,Steven Russell
#t2010
#cBMC Bioinformatics
#index2850359
#% 
#!
  
#*A reliable measure of similarity based on dependency for short time series: an application to gene expression networks.
#@Mônica G. Campiteli,Frederico M. Soriani,Iran Malavazi,Osame Kinouchi,Carlos A. B. Pereira,Gustavo H. Goldman
#t2009
#cBMC Bioinformatics
#index2849935
#% 
#!
  
#*A service-oriented architecture for integrating the modeling and formal verification of genetic regulatory networks.
#@Pedro T. Monteiro,Estelle Dumas,Bruno Besson,Radu Mateescu,Michel Page,Ana T. Freitas,Hidde de Jong
#t2009
#cBMC Bioinformatics
#index2849940
#% 
#!
  
#*Predicting dihedral angle probability distributions for protein coil residues from primary sequence using neural networks.
#@Glennie Helles,Rasmus Fonseca
#t2009
#cBMC Bioinformatics
#index2849899
#% 
#!
  
#*A high-level 3D visualization API for Java and ImageJ.
#@Benjamin Schmid,Johannes E. Schindelin,Albert Cardona,Mark Longair,Martin Heisenberg
#t2010
#cBMC Bioinformatics
#index2850437
#% 
#!
  
#*G+C content dominates intrinsic nucleosome occupancy.
#@Desiree Tillo,Timothy R. Hughes
#t2009
#cBMC Bioinformatics
#index2850003
#% 
#!
  
#*SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services.
#@Damian Gessler,Gary S. Schiltz,Greg D. May,Shulamit Avraham,Christopher D. Town,David Grant,Rex T. Nelson
#t2009
#cBMC Bioinformatics
#index2850010
#% 
#!
  
#*Exploratory analysis of protein translation regulatory networks using hierarchical random graphs.
#@Daniel Duanqing Wu,Xiaohua Hu,E. K. Park,Xiaofeng Wang,Jiali Feng,Xindong Wu
#t2010
#cBMC Bioinformatics
#index2850569
#% 
#!
  
#*Pripper: prediction of caspase cleavage sites from whole proteomes.
#@Mirva Piippo,Niina Lietzén,Olli Nevalainen,Jussi Salmi,Tuula A. Nyman
#t2010
#cBMC Bioinformatics
#index2850444
#% 
#!
  
#*GIGA: a simple, efficient algorithm for gene tree inference in the genomic age.
#@Paul D. Thomas
#t2010
#cBMC Bioinformatics
#index2850507
#% 
#!
  
#*ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data.
#@John C. Dittmar,Robert J. D. Reid,Rodney Rothstein
#t2010
#cBMC Bioinformatics
#index2850415
#% 
#!
  
#*Beyond rotamers: a generative, probabilistic model of side chains in proteins.
#@Tim Harder,Wouter Boomsma,Martin Paluszewski,Jes Frellsen,Kristoffer E. Johansson,Thomas Hamelryck
#t2010
#cBMC Bioinformatics
#index2850408
#% 
#!
  
#*Enhancing navigation in biomedical databases by community voting and database-driven text classification.
#@Timo Duchrow,Timur Shtatland,Daniel Guettler,Misha Pivovarov,Stefan Kramer,Ralph Weissleder
#t2009
#cBMC Bioinformatics
#index2850045
#% 
#!
  
#*JunctionViewer: customizable annotation software for repeat-rich genomic regions.
#@Thomas K. Wolfgruber,Gernot G. Presting
#t2010
#cBMC Bioinformatics
#index2850394
#% 
#!
  
#*GWAMA: software for genome-wide association meta-analysis.
#@Reedik Mägi,Andrew P. Morris
#t2010
#cBMC Bioinformatics
#index2850220
#% 
#!
  
#*Scaffold filling, contig fusion and comparative gene order inference.
#@Adriana Muñoz,Chunfang Zheng,Qian Zhu,Victor A. Albert,Steve Rounsley,David Sankoff
#t2010
#cBMC Bioinformatics
#index2850249
#% 
#!
  
#*Comparative study of gene set enrichment methods.
#@Luca Abatangelo,Rosalia Maglietta,Angela Distaso,Annarita D'Addabbo,Teresa Maria Creanza,Sayan Mukherjee,Nicola Ancona
#t2009
#cBMC Bioinformatics
#index2849961
#% 
#!
  
#*The potential for automated question answering in the context of genomic medicine: an assessment of existing resources and properties of answers.
#@Casey Lynnette Overby,Peter Tarczy-Hornoch,Dina Demner-Fushman
#t2009
#cBMC Bioinformatics
#index2850059
#% 
#!
  
#*EnvMine: A text-mining system for the automatic extraction of contextual information.
#@Javier Tamames,Victor de Lorenzo
#t2010
#cBMC Bioinformatics
#index2850493
#% 
#!
  
#*PCA2GO: a new multivariate statistics based method to identify highly expressed GO-Terms.
#@Marc Bruckskotten,Mario Looso,Franz Cemic,Anne Konzer,Jurgen Hemberger,Markus Kruger,Thomas Braun
#t2010
#cBMC Bioinformatics
#index2850457
#% 
#!
  
#*A Markov blanket-based method for detecting causal SNPs in GWAS.
#@Bing Han,Meeyoung Park,Xue-wen Chen
#t2010
#cBMC Bioinformatics
#index2850603
#% 
#!
  
#*Towards reliable isoform quantification using RNA-SEQ data.
#@Brian E. Howard,Steffen Heber
#t2010
#cBMC Bioinformatics
#index2850555
#% 
#!
  
#*An automatic method for identifying surface proteins in bacteria: SLEP.
#@Emanuela Giombini,Massimiliano Orsini,Danilo Carrabino,Anna Tramontano
#t2010
#cBMC Bioinformatics
#index2850380
#% 
#!
  
#*Inferring protein function by domain context similarities in protein-protein interaction networks.
#@Song Zhang,Hu Chen,Ke Liu,Zhirong Sun
#t2009
#cBMC Bioinformatics
#index2849912
#% 
#!
  
#*A high-throughput pipeline for the design of real-time PCR signatures.
#@Ravi Vijaya Satya,Kamal Kumar,Nela Zavaljevski,Jaques Reifman
#t2010
#cBMC Bioinformatics
#index2850451
#% 
#!
  
#*Local alignment of generalized k-base encoded DNA sequence.
#@Nils Homer,Stanley F. Nelson,Barry Merriman
#t2010
#cBMC Bioinformatics
#index2850309
#% 
#!
  
#*Service-based analysis of biological pathways.
#@George Zheng,Athman Bouguettaya
#t2009
#cBMC Bioinformatics
#index2850060
#% 
#!
  
#*Lists2Networks: Integrated analysis of gene/protein lists.
#@Alexander Lachmann,Avi Ma'ayan
#t2010
#cBMC Bioinformatics
#index2850268
#% 
#!
  
#*Computing power of quantitative trait locus association mapping for haploid loci.
#@Derek Gordon,Andrew R. Zinn
#t2009
#cBMC Bioinformatics
#index2850046
#% 
#!
  
#*Machine learning methods for metabolic pathway prediction.
#@Joseph M. Dale,Liviu Popescu,Peter D. Karp
#t2010
#cBMC Bioinformatics
#index2850387
#% 
#!
  
#*Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD).
#@Thomas C. Wiegers,Allan Peter Davis,K. Bretonnel Cohen,Lynette Hirschman,Carolyn J. Mattingly
#t2009
#cBMC Bioinformatics
#index2849863
#% 
#!
  
#*Predicting nucleosome positioning using a duration Hidden Markov Model.
#@Liqun Xi,Yvonne Fondufe-Mittendorf,Lei Xia,Jared Flatow,Jonathan Widom,Ji-Ping Wang
#t2010
#cBMC Bioinformatics
#index2850227
#% 
#!
  
#*A model-independent approach to infer hierarchical codon substitution dynamics.
#@Olof Görnerup,Martin Nilsson Jacobi
#t2010
#cBMC Bioinformatics
#index2850464
#% 
#!
  
#*LipocalinPred: a SVM-based method for prediction of lipocalins.
#@Jayashree Ramana,Dinesh Gupta
#t2009
#cBMC Bioinformatics
#index2849890
#% 
#!
  
#*Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests.
#@Sophie S. Abby,Eric Tannier,Manolo Gouy,Vincent Daubin
#t2010
#cBMC Bioinformatics
#index2850366
#% 
#!
  
#*PLAST: parallel local alignment search tool for database comparison.
#@Van Hoa Nguyen,Dominique Lavenier
#t2009
#cBMC Bioinformatics
#index2850009
#% 
#!
  
#*Identifying quantitative operation principles in metabolic pathways: a systematic method for searching feasible enzyme activity patterns leading to cellular adaptive responses.
#@Gonzalo Guillén-Gosálbez,Albert Sorribas
#t2009
#cBMC Bioinformatics
#index2849921
#% 
#!
  
#*Clustering of protein domains for functional and evolutionary studies.
#@Pavle Goldstein,Jurica Zucko,Dusica Vujaklija,Anita Krisko,Daslav Hranueli,Paul F. Long,Catherine Etchebest,Bojan Basrak,John Cullum
#t2009
#cBMC Bioinformatics
#index2849975
#% 
#!
  
#*Artificial neural networks for the prediction of peptide drift time in ion mobility mass spectrometry.
#@Bing Wang,Steve Valentine,Manolo Plasencia,Sriram Raghuraman,Xiang Zhang
#t2010
#cBMC Bioinformatics
#index2850471
#% 
#!
  
#*RNAstructure: software for RNA secondary structure prediction and analysis.
#@Jessica S. Reuter,David H. Mathews
#t2010
#cBMC Bioinformatics
#index2850282
#% 
#!
  
#*Knowledge-based analysis of microarrays for the discovery of transcriptional regulation relationships.
#@Junhee Seok,Amit Kaushal,Ronald W. Davis,Wenzhong Xiao
#t2010
#cBMC Bioinformatics
#index2850576
#% 
#!
  
#*MISHIMA - a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data.
#@Kirill Kryukov,Naruya Saitou
#t2010
#cBMC Bioinformatics
#index2850185
#% 
#!
  
#*Protein sequences classification by means of feature extraction with substitution matrices.
#@Rabie Saidi,Mondher Maddouri,Engelbert Mephu Nguifo
#t2010
#cBMC Bioinformatics
#index2850401
#% 
#!
  
#*Detection of recurrent copy number alterations in the genome: taking among-subject heterogeneity seriously.
#@Oscar M. Rueda,Ramón Díaz-Uriarte
#t2009
#cBMC Bioinformatics
#index2849858
#% 
#!
  
#*Discrete wavelet transform de-noising in eukaryotic gene splicing.
#@Tina P. George,Tessamma Thomas
#t2010
#cBMC Bioinformatics
#index2850562
#% 
#!
  
#*screening for functional candidates amongst hypothetical proteins.
#@Claus Desler,Prashanth Suravajhala,May Sanderhoff,Merete Rasmussen,Lene Juel Rasmussen
#t2009
#cBMC Bioinformatics
#index2849885
#% 
#!
  
#*SNP-RFLPing 2: an updated and integrated PCR-RFLP tool for SNP genotyping.
#@Hsueh-Wei Chang,Yu-Huei Cheng,Li-Yeh Chuang,Cheng-Hong Yang
#t2010
#cBMC Bioinformatics
#index2850373
#% 
#!
  
#*Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB.
#@Aristotelis Chatziioannou,Panagiotis Moulos,Fragiskos N. Kolisis
#t2009
#cBMC Bioinformatics
#index2849996
#% 
#!
  
#*Shape based kinetic outlier detection in real-time PCR.
#@Davide Sisti,Michele Guescini,Marco B. L. Rocchi,Pasquale Tibollo,Mario D'Atri,Vilberto Stocchi
#t2010
#cBMC Bioinformatics
#index2850198
#% 
#!
  
#*Directionality in protein fold prediction.
#@Jonathan J. Ellis,Fabien P. E. Huard,Charlotte M. Deane,Sheenal Srivastava,Graham R. Wood
#t2010
#cBMC Bioinformatics
#index2850514
#% 
#!
  
#*Considering scores between unrelated proteins in the search database improves profile comparison.
#@Ruslan Sadreyev,Yong Wang,Nick V. Grishin
#t2009
#cBMC Bioinformatics
#index2849936
#% 
#!
  
#*ProbFAST: Probabilistic Functional Analysis System Tool.
#@Israel T. da Silva,Ricardo Z. N. Vêncio,Thiago Y. K. Oliveira,Greice A. Molfetta,Wilson A. Silva Jr.
#t2010
#cBMC Bioinformatics
#index2850519
#% 
#!
  
#*BioPhysConnectoR: Connecting Sequence Information and Biophysical Models.
#@Franziska Hoffgaard,Philipp Weil,Kay Hamacher
#t2010
#cBMC Bioinformatics
#index2850170
#% 
#!
  
#*Linear predictive coding representation of correlated mutation for protein sequence alignment.
#@Chan-seok Jeong,Dongsup Kim
#t2010
#cBMC Bioinformatics
#index2850525
#%763459
#%1219784
#%767591
#%3006103
#%1042347
#!
  
#*Integrative approaches to the prediction of protein functions based on the feature selection.
#@Seokha Ko,Hyunju Lee
#t2009
#cBMC Bioinformatics
#index2850029
#% 
#!
  
#*MOTIPS: Automated Motif Analysis for Predicting Targets of Modular Protein Domains.
#@Hugo Y. K. Lam,Philip M. Kim,Janine Mok,Raffi Tonikian,Sachdev S. Sidhu,Benjamin E. Turk,Michael Snyder,Mark B. Gerstein
#t2010
#cBMC Bioinformatics
#index2850477
#% 
#!
  
#*Analysis of interactions between ribosomal proteins and RNA structural motifs.
#@Giovanni Ciriello,Claudio Gallina,Concettina Guerra
#t2010
#cBMC Bioinformatics
#index2850596
#% 
#!
  
#*Resolving anaphoras for the extraction of drug-drug interactions in pharmacological documents.
#@Isabel Segura-Bedmar,Mario Crespo,César de Pablo-Sánchez,Paloma Martínez
#t2010
#cBMC Bioinformatics
#index2850546
#% 
#!
  
#*prediction of blood-secretory human proteins using a ranking algorithm.
#@Qi Liu,Juan Cui,Qiang Yang,Ying Xu
#t2010
#cBMC Bioinformatics
#index2850318
#% 
#!
  
#*ABCtoolbox: a versatile toolkit for approximate Bayesian computations.
#@Daniel Wegmann,Christoph Leuenberger,Samuel Neuenschwander,Laurent Excoffier
#t2010
#cBMC Bioinformatics
#index2850273
#% 
#!
  
#*Skittle: A 2-Dimensional Genome Visualization Tool.
#@Josiah D. Seaman,John C. Sanford
#t2009
#cBMC Bioinformatics
#index2849993
#% 
#!
  
#*A novel approach for haplotype-based association analysis using family data.
#@Yixuan Chen,Xin Li,Jing Li
#t2010
#cBMC Bioinformatics
#index2850589
#% 
#!
  
#*Proceedings of the 2009 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
#@Jonathan D. Wren,Yuriy Gusev,Raphael D. Isokpehi,Daniel Berleant,Ulisses Braga-Neto,Dawn Wilkins,Susan Bridges
#t2009
#cBMC Bioinformatics
#index2850162
#% 
#!
  
#*Bayesian integrated modeling of expression data: a case study on RhoG.
#@Rashi Gupta,Dario Greco,Petri Auvinen,Elja Arjas
#t2010
#cBMC Bioinformatics
#index2850287
#% 
#!
  
#*An integrated Bayesian analysis of LOH and copy number data.
#@Paola M. V. Rancoita,Marcus Hutter,Francesco Bertoni,Ivo Kwee
#t2010
#cBMC Bioinformatics
#index2850197
#% 
#!
  
#*Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics.
#@Benjamin M. Good,Joseph T. Tennis,Mark D. Wilkinson
#t2009
#cBMC Bioinformatics
#index2849893
#% 
#!
  
#*Global screening of potential biofilm-related transcription factors via network comparison.
#@Yu-Chao Wang,Chung-Yu Lan,Wen-Ping Hsieh,Luis A. Murillo,Nina Agabian,Bor-Sen Chen
#t2010
#cBMC Bioinformatics
#index2850228
#% 
#!
  
#*Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand complexes.
#@Nobuyuki Uchikoga,Takatsugu Hirokawa
#t2010
#cBMC Bioinformatics
#index2850485
#% 
#!
  
#*Threshold selection in gene co-expression networks using spectral graph theory techniques.
#@Andy D. Perkins,Michael A. Langston
#t2009
#cBMC Bioinformatics
#index2850143
#% 
#!
  
#*Predicting protein-protein interactions in unbalanced data using the primary structure of proteins.
#@Chi-Yuan Yu,Lih-Ching Chou,Darby Tien-Hao Chang
#t2010
#cBMC Bioinformatics
#index2850344
#% 
#!
  
#*Screensaver: an open source lab information management system (LIMS) for high throughput screening facilities.
#@Andrew N. Tolopko,John P. Sullivan,Sean D. Erickson,David Wrobel,Su L. Chiang,Katrina Rudnicki,Stewart Rudnicki,Jennifer Nale,Laura M. Selfors,Dara Greenhouse,Jeremy Muhlich,Caroline E. Shamu
#t2010
#cBMC Bioinformatics
#index2850323
#% 
#!
  
#*IRIS: a method for reverse engineering of regulatory relations in gene networks.
#@Sandro Morganella,Pietro Zoppoli,Michele Ceccarelli
#t2009
#cBMC Bioinformatics
#index2849929
#% 
#!
  
#*AntiBP2: improved version of antibacterial peptide prediction.
#@Sneh Lata,Nitish K. Mishra,Gajendra P. S. Raghava
#t2010
#cBMC Bioinformatics
#index2850539
#% 
#!
  
#*Evaluation of Predicted Regulatory Interactions in .
#@Damion Nero,Manpreet S. Katari,Jonathan Kelfer,Daniel Tranchina,Gloria M. Coruzzi
#t2009
#cBMC Bioinformatics
#index2849911
#% 
#!
  
#*Sub-population analysis based on temporal features of high content images.
#@Merlin Veronika,James Evans,Paul Matsudaira,Roy Welsch,Jagath C. Rajapakse
#t2009
#cBMC Bioinformatics
#index2850094
#% 
#!
  
#*Unsupervised statistical clustering of environmental shotgun sequences.
#@Andrey Kislyuk,Srijak Bhatnagar,Jonathan Dushoff,Joshua S. Weitz
#t2009
#cBMC Bioinformatics
#index2849918
#% 
#!
  
#*SFSSClass: an integrated approach for miRNA based tumor classification.
#@Ramkrishna Mitra,Sanghamitra Bandyopadhyay,Ujjwal Maulik,Michael Q. Zhang
#t2010
#cBMC Bioinformatics
#index2850532
#% 
#!
  
#*Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations.
#@Joke Reumers,Joost Schymkowitz,Frederic Rousseau
#t2009
#cBMC Bioinformatics
#index2850080
#% 
#!
  
#*A novel R-package graphic user interface for the analysis of metabonomic profiles.
#@Jose L. Izquierdo-García,Ignacio Rodríguez,Angelos Kyriazis,Palmira Villa,Pilar Barreiro,Manuel Desco,Jesús Ruiz-Cabello
#t2009
#cBMC Bioinformatics
#index2849957
#% 
#!
  
#*Kinome-wide interaction modelling using alignment-based and alignment-independent approaches for kinase description and linear and non-linear data analysis techniques.
#@Maris Lapinsh,Jarl E. S. Wikberg
#t2010
#cBMC Bioinformatics
#index2850295
#% 
#!
  
#*Generation of Gene Ontology benchmark datasets with various types of positive signal.
#@Petri Törönen,Petri Pehkonen,Liisa Holm
#t2009
#cBMC Bioinformatics
#index2849900
#% 
#!
  
#*SitesIdentify: a protein functional site prediction tool.
#@Tracey Bray,Pedro Chan,Salim Bougouffa,Richard Greaves,Andrew J. Doig,Jim Warwicker
#t2009
#cBMC Bioinformatics
#index2850022
#% 
#!
  
#*Comparison of evolutionary algorithms in gene regulatory network model inference.
#@Alina Sîrbu,Heather J. Ruskin,Martin Crane
#t2010
#cBMC Bioinformatics
#index2850428
#% 
#!
  
#*The identification of informative genes from multiple datasets with increasing complexity.
#@S. Yahya Anvar,Peter A. C. 't Hoen,Allan Tucker
#t2010
#cBMC Bioinformatics
#index2850243
#% 
#!
  
#*TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets.
#@Robert Schmieder,Yan Wei Lim,Forest Rohwer,Robert Edwards
#t2010
#cBMC Bioinformatics
#index2850330
#% 
#!
  
#*A comparison of probe-level and probeset models for small-sample gene expression data.
#@John R. Stevens,Jason L. Bell,Kenneth I. Aston,Kenneth L. White
#t2010
#cBMC Bioinformatics
#index2850219
#% 
#!
  
#*AtPIN: Protein Interaction Network.
#@Marcelo M. Brandão,Luiza L. Dantas,Marcio C. Silva-Filho
#t2009
#cBMC Bioinformatics
#index2849985
#% 
#!
  
#*Trends in modeling Biomedical Complex Systems.
#@Luciano Milanesi,Paolo Romano,Gastone C. Castellani,Daniel Remondini,Pietro Liò
#t2009
#cBMC Bioinformatics
#index2850125
#% 
#!
  
#*The behaviour of random forest permutation-based variable importance measures under predictor correlation.
#@Kristin K. Nicodemus,James D. Malley,Carolin Strobl,Andreas Ziegler
#t2010
#cBMC Bioinformatics
#index2850184
#% 
#!
  
#*LINNAEUS: A species name identification system for biomedical literature.
#@Martin Gerner,Goran Nenadic,Casey M. Bergman
#t2010
#cBMC Bioinformatics
#index2850193
#% 
#!
  
#*Detection of distant evolutionary relationships between protein families using theory of sequence profile-profile comparison.
#@Mindaugas Margelevicius,Ceslovas Venclovas
#t2010
#cBMC Bioinformatics
#index2850494
#% 
#!
  
#*SKPDB: a structural database of shikimate pathway enzymes.
#@Helen A. Arcuri,Geraldo F. D. Zafalon,Evandro A. Marucci,Carlos E. Bonalumi,Nelson J. F. da Silveira,José M. Machado,Walter F. de Azevedo Jr.,Mário S. Palma
#t2010
#cBMC Bioinformatics
#index2850337
#% 
#!
  
#*A comparison of approximation techniques for variance-based sensitivity analysis of biochemical reaction systems.
#@Hong-Xuan Zhang,John Goutsias
#t2010
#cBMC Bioinformatics
#index2850422
#% 
#!
  
#*AMS 3.0: prediction of post-translational modifications.
#@Subhadip Basu,Dariusz Plewczynski
#t2010
#cBMC Bioinformatics
#index2850240
#% 
#!
  
#*WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads.
#@Wolfgang Gerlach,Sebastian Jünemann,Felix Tille,Alexander Goesmann,Jens Stoye
#t2009
#cBMC Bioinformatics
#index2849876
#% 
#!
  
#*An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information.
#@Kaname Kojima,Masao Nagasaki,Satoru Miyano
#t2010
#cBMC Bioinformatics
#index2850304
#% 
#!
  
#*New components of the PKA pathway revealed by Bayesian analysis of expression data.
#@Anup Parikh,Eryong Huang,Christopher Dinh,Blaz Zupan,Adam Kuspa,Devika Subramanian,Gad Shaulsky
#t2010
#cBMC Bioinformatics
#index2850254
#% 
#!
  
#*Rule-based spatial modeling with diffusing, geometrically constrained molecules.
#@Gerd Gruenert,Bashar Ibrahim,Thorsten Lenser,Maiko Lohel,Thomas Hinze,Peter Dittrich
#t2010
#cBMC Bioinformatics
#index2850269
#% 
#!
  
#*Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies.
#@Denitsa Alamanova,Philip Stegmaier,Alexander E. Kel
#t2010
#cBMC Bioinformatics
#index2850513
#% 
#!
  
#*BLAST+: architecture and applications.
#@Christiam Camacho,George Coulouris,Vahram Avagyan,Ning Ma,Jason S. Papadopoulos,Kevin Bealer,Thomas L. Madden
#t2009
#cBMC Bioinformatics
#index2850047
#% 
#!
  
#*APBC 2010. The Eighth Asia Pacific Bioinformatics Conference Bangalore, India, 18-21 January 2010.
#@Laxmi Parida,Gene Myers
#t2010
#cBMC Bioinformatics
#index2850602
#% 
#!
  
#*Protein-protein docking using region-based 3D Zernike descriptors.
#@Vishwesh Venkatraman,Yifeng D. Yang,Lee Sael,Daisuke Kihara
#t2009
#cBMC Bioinformatics
#index2849866
#% 
#!
  
#*Cloud computing for comparative genomics.
#@Dennis P. Wall,Parul Kudtarkar,Vincent A. Fusaro,Rimma Pivovarov,Prasad Patil,Peter J. Tonellato
#t2010
#cBMC Bioinformatics
#index2850458
#% 
#!
  
#*PuTmiR: A database for extracting neighboring transcription factors of human microRNAs.
#@Sanghamitra Bandyopadhyay,Malay Bhattacharyya
#t2010
#cBMC Bioinformatics
#index2850499
#% 
#!
  
#*Time warping of evolutionary distant temporal gene expression data based on noise suppression.
#@Yury Goltsev,Dmitri A. Papatsenko
#t2009
#cBMC Bioinformatics
#index2849976
#% 
#!
  
#*Formal reasoning on qualitative models of coinfection of HIV and Tuberculosis and HAART therapy.
#@Anil Sorathiya,Andrea Bracciali,Pietro Liò
#t2010
#cBMC Bioinformatics
#index2850568
#% 
#!
  
#*Better score function for peptide identification with ETD MS/MS spectra.
#@Xiaowen Liu,Baozhen Shan,Lei Xin,Bin Ma
#t2010
#cBMC Bioinformatics
#index2850583
#% 
#!
  
#*A random effect multiplicative heteroscedastic model for bacterial growth.
#@Ricardo Cao,Mario Francisco-Fernández,Emiliano J. Quinto
#t2010
#cBMC Bioinformatics
#index2850232
#% 
#!
  
#*Identification of functionally related genes using data mining and data integration: a breast cancer case study.
#@Ettore Mosca,Gloria Bertoli,Eleonora Piscitelli,Laura Vilardo,Rolland A. Reinbold,Ileana Zucchi,Luciano Milanesi
#t2009
#cBMC Bioinformatics
#index2850151
#% 
#!
  
#*Detecting microRNA activity from gene expression data.
#@Stephen F. Madden,Susan B. Carpenter,Ian B. Jeffery,Harry Björkbacka,Katherine A. Fitzgerald,Luke A. O'Neill,Desmond G. Higgins
#t2010
#cBMC Bioinformatics
#index2850407
#% 
#!
  
#*Basic properties and information theory of Audic-Claverie statistic for analyzing cDNA arrays.
#@Peter Tino
#t2009
#cBMC Bioinformatics
#index2849910
#% 
#!
  
#*genome organization in light of whole transcriptome sequencing.
#@Jeffrey Martin,Wenhan Zhu,Karla D. Passalacqua,Nicholas H. Bergman,Mark Borodovsky
#t2010
#cBMC Bioinformatics
#index2850526
#% 
#!
  
#*Gevab: a prototype genome variation analysis browsing server.
#@Woo-Yeon Kim,Sang-Yoon Kim,Tae-Hyung Kim,Sung-Min Ahn,Ha Na Byun,Deokhoon Kim,Dae-Soo Kim,Yong Seok Lee,Ho Ghang,Daeui Park,Byoung-Chul Kim,Chulhong Kim,Sunghoon Lee,Seong-Jin Kim,Jong Bhak
#t2009
#cBMC Bioinformatics
#index2850065
#% 
#!
  
#*Calibur: a tool for clustering large numbers of protein decoys.
#@Shuai Cheng Li,Yen Kaow Ng
#t2010
#cBMC Bioinformatics
#index2850204
#% 
#!
  
#*Structuring and extracting knowledge for the support of hypothesis generation in molecular biology.
#@Marco Roos,M. Scott Marshall,Andrew P. Gibson,Martijn J. Schuemie,Edgar Meij,Sophia Katrenko,Willem Robert van Hage,Konstantinos Krommydas,Pieter W. Adriaans
#t2009
#cBMC Bioinformatics
#index2850096
#% 
#!
  
#*Looking for chromosome spatial organization rules in microarray gene expression data.
#@Teresa Szczepinska,Krzysztof Pawlowski
#t2009
#cBMC Bioinformatics
#index2850122
#% 
#!
  
#*Effects of normalization on quantitative traits in association test.
#@Liang Goh,Von Bing Yap
#t2009
#cBMC Bioinformatics
#index2850011
#% 
#!
  
#*Delineation of amplification, hybridization and location effects in microarray data yields better-quality normalization.
#@Marc Hulsman,Anouk Mentink,Eugene P. van Someren,Koen J. Dechering,Jan de Boer,Marcel J. T. Reinders
#t2010
#cBMC Bioinformatics
#index2850250
#% 
#!
  
#*LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships.
#@Adriano Barbosa-Silva,Theodoros G. Soldatos,Ivan L. F. Magalhães,Georgios A. Pavlopoulos,Jean-Fred Fontaine,Miguel A. Andrade-Navarro,Reinhard Schneider,J. Miguel Ortega
#t2010
#cBMC Bioinformatics
#index2850326
#% 
#!
  
#*The Korean Bird Information System (KBIS) through open and public participation.
#@In-Hwan Paik,Jeongheui Lim,Byung-Sun Chun,Seon-Duck Jin,Jae-Pyoung Yu,Joon-Woo Lee,Jong Bhak,Woon Kee Paek
#t2009
#cBMC Bioinformatics
#index2850114
#% 
#!
  
#*From learning taxonomies to phylogenetic learning: Integration of 16S rRNA gene data into FAME-based bacterial classification.
#@Bram Slabbinck,Willem Waegeman,Peter Dawyndt,Paul De Vos,Bernard De Baets
#t2010
#cBMC Bioinformatics
#index2850374
#% 
#!
  
#*Mayday - integrative analytics for expression data.
#@Florian Battke,Stephan Symons,Kay Nieselt
#t2010
#cBMC Bioinformatics
#index2850179
#% 
#!
  
#*bioGUID: resolving, discovering, and minting identifiers for biodiversity informatics.
#@Roderic D. M. Page
#t2009
#cBMC Bioinformatics
#index2850089
#% 
#!
  
#*BASE - 2nd generation software for microarray data management and analysis.
#@Johan Vallon-Christersson,Nicklas Nordborg,Martin Svensson,Jari Häkkinen
#t2009
#cBMC Bioinformatics
#index2850040
#% 
#!
  
#*phyloXML: XML for evolutionary biology and comparative genomics.
#@Mira V. Han,Christian M. Zmasek
#t2009
#cBMC Bioinformatics
#index2849950
#% 
#!
  
#*Fast multi-core based multimodal registration of 2D cross-sections and 3D datasets.
#@Michael Scharfe,Rainer Pielot,Falk Schreiber
#t2010
#cBMC Bioinformatics
#index2850508
#% 
#!
  
#*Discovering collectively informative descriptors from high-throughput experiments.
#@Clark D. Jeffries,William O. Ward,Diana O. Perkins,Fred A. Wright
#t2009
#cBMC Bioinformatics
#index2849949
#% 
#!
  
#*Ovarian cancer detection from metabolomic liquid chromatography/mass spectrometry data by support vector machines.
#@Wei Guan,Manshui Zhou,Christina Y. Hampton,Benedict B. Benigno,L. DeEtte Walker,Alexander Gray,John F. McDonald,Facundo M. Fernández
#t2009
#cBMC Bioinformatics
#index2850032
#% 
#!
  
#*The impact of measurement errors in the identification of regulatory networks.
#@André Fujita,Alexandre G. Patriota,João Ricardo Sato,Satoru Miyano
#t2009
#cBMC Bioinformatics
#index2849855
#% 
#!
  
#*Structure prediction for the helical skeletons detected from the low resolution protein density map.
#@Kamal Al-Nasr,Weitao Sun,Jing He
#t2010
#cBMC Bioinformatics
#index2850554
#% 
#!
  
#*GOAL: A software tool for assessing biological significance of genes groups.
#@Alain B. Tchagang,Alexander Gawronski,Hugo Bérubé,Sieu Phan,Fazel Famili,Youlian Pan
#t2010
#cBMC Bioinformatics
#index2850214
#% 
#!
  
#*A response to information criterion-based clustering with order-restricted candidate profiles in short time-course microarray experiments.
#@Shyamal D. Peddada,David M. Umbach,Shawn F. Harris
#t2009
#cBMC Bioinformatics
#index2849939
#% 
#!
  
#*Error, reproducibility and sensitivity : a pipeline for data processing of Agilent oligonucleotide expression arrays.
#@Benjamin Chain,Helen Bowen,John Hammond,Wilfried Posch,Jane Rasaiyaah,Jhen Tsang,Mahdad Noursadeghi
#t2010
#cBMC Bioinformatics
#index2850443
#% 
#!
  
#*Predicting microRNA precursors with a generalized Gaussian components based density estimation algorithm.
#@Chih-Hung Hsieh,Darby Tien-Hao Chang,Cheng-Hao Hsueh,Chi-Yeh Wu,Yen-Jen Oyang
#t2010
#cBMC Bioinformatics
#index2850597
#% 
#!
  
#*Automatic identification of angiogenesis in double stained images of liver tissue.
#@Mutlu Mete,Leah Hennings,Horace J. Spencer,Umit Topaloglu
#t2009
#cBMC Bioinformatics
#index2850158
#% 
#!
  
#*Unsupervised binning of environmental genomic fragments based on an error robust selection of -mers.
#@Bin Yang,Yu Peng,Henry Chi-Ming Leung,Siu-Ming Yiu,Jing-Chi Chen,Francis Yuk-Lun Chin
#t2010
#cBMC Bioinformatics
#index2850582
#% 
#!
  
#*Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins.
#@Young-Rae Cho,Aidong Zhang
#t2010
#cBMC Bioinformatics
#index2850563
#% 
#!
  
#*Location, location, location: utilizing pipelines and services to more effectively georeference the world's biodiversity data.
#@Andrew W. Hill,Robert P. Guralnick,Paul Flemons,Reed Beaman,John Wieczorek,Ajay Ranipeta,Vishwas Chavan,David Remsen
#t2009
#cBMC Bioinformatics
#index2850068
#% 
#!
  
#*Computational identification of rare codons of based on codon pairs preference.
#@Xianming Wu,Songfeng Wu,Dong Li,Jiyang Zhang,Lin Hou,Jie Ma,Wanlin Liu,Daming Ren,Yunping Zhu,Fuchu He
#t2010
#cBMC Bioinformatics
#index2850176
#% 
#!
  
#*Hit integration for identifying optimal spaced seeds.
#@Won-Hyoung Chung,Seong-Bae Park
#t2010
#cBMC Bioinformatics
#index2850577
#% 
#!
  
#*Prediction of breast cancer prognosis using gene set statistics provides signature stability and biological context.
#@Gad Abraham,Adam Kowalczyk,Sherene Loi,Izhak Haviv,Justin Zobel
#t2010
#cBMC Bioinformatics
#index2850393
#% 
#!
  
#*Large-scale prediction of protein-protein interactions from structures.
#@Martial Hue,Michael Riffle,Jean-Philippe Vert,William Stafford Noble
#t2010
#cBMC Bioinformatics
#index2850486
#% 
#!
  
#*SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read.
#@Juan Falgueras,Antonio J. Lara,Noé Fernández-Pozo,Francisco R. Cantón,Guillermo Pérez-Trabado,M. Gonzalo Claros
#t2010
#cBMC Bioinformatics
#index2850353
#% 
#!
  
#*Validation of differential gene expression algorithms: Application comparing fold-change estimation to hypothesis testing.
#@Corey M. Yanofsky,David R. Bickel
#t2010
#cBMC Bioinformatics
#index2850360
#% 
#!
  
#*BayesPeak: Bayesian analysis of ChIP-seq data.
#@Christiana Spyrou,Rory Stark,Andy G. Lynch,Simon Tavaré
#t2009
#cBMC Bioinformatics
#index2849882
#% 
#!
  
#*Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast computing of intermolecular contact distance and residue desolvation.
#@Albert Solernou,Juan Fernández-Recio
#t2010
#cBMC Bioinformatics
#index2850169
#% 
#!
  
#*Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity.
#@Márton Münz,Rune B. Lyngsø,Jotun Hein,Philip C. Biggin
#t2010
#cBMC Bioinformatics
#index2850463
#% 
#!
  
#*Phylogenomic inference of functional divergence.
#@Tom A. Williams,Brian E. Caffrey,Xiaowei Jiang,Christina Toft,Mario A. Fares
#t2009
#cBMC Bioinformatics
#index2850058
#% 
#!
  
#*FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases.
#@Stephen J. Goodswen,Cedric Gondro,Nathan S. Watson-Haigh,Haja N. Kadarmideen
#t2010
#cBMC Bioinformatics
#index2850200
#% 
#!
  
#*The Protein-DNA Interface database.
#@Tomás Norambuena,Francisco Melo
#t2010
#cBMC Bioinformatics
#index2850338
#% 
#!
  
#*Optimization algorithms for functional deimmunization of therapeutic proteins.
#@Andrew S. Parker,Wei Zheng,Karl E. Griswold,Chris Bailey-Kellogg
#t2010
#cBMC Bioinformatics
#index2850409
#% 
#!
  
#*BISMA - Fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences.
#@Christian Rohde,Yingying Zhang,Richard Reinhardt,Albert Jeltsch
#t2010
#cBMC Bioinformatics
#index2850402
#% 
#!
  
#*Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates.
#@Boris Sobolev,Dmitry Filimonov,Alexey Lagunin,Alexey Zakharov,Olga Koborova,Alexander E. Kel,Vladimir Poroikov
#t2010
#cBMC Bioinformatics
#index2850218
#% 
#!
  
#*Sparse canonical correlation analysis for identifying, connecting and completing gene-expression networks.
#@Sandra Waaijenborg,Aeilko H. Zwinderman
#t2009
#cBMC Bioinformatics
#index2850004
#% 
#!
  
#*The ontology of biological sequences.
#@Robert Hoehndorf,Janet Kelso,Heinrich Herre
#t2009
#cBMC Bioinformatics
#index2849958
#% 
#!
  
#*A classification model for distinguishing copy number variants from cancer-related alterations.
#@Irina Ostrovnaya,Gouri Nanjangud,Adam B. Olshen
#t2010
#cBMC Bioinformatics
#index2850379
#% 
#!
  
#*Unifying generative and discriminative learning principles.
#@Jens Keilwagen,Jan Grau,Stefan Posch,Marc Strickert,Ivo Grosse
#t2010
#cBMC Bioinformatics
#index2850421
#% 
#!
  
#*Identifying common prognostic factors in genomic cancer studies: A novel index for censored outcomes.
#@Sigrid Rouam,Thierry Moreau,Philippe Broët
#t2010
#cBMC Bioinformatics
#index2850445
#% 
#!
  
#*Correlating protein function and stability through the analysis of single amino acid substitutions.
#@Yana Bromberg,Burkhard Rost
#t2009
#cBMC Bioinformatics
#index2850133
#% 
#!
  
#*Walk-weighted subsequence kernels for protein-protein interaction extraction.
#@Seonho Kim,Juntae Yoon,Jihoon Yang,Seog Park
#t2010
#cBMC Bioinformatics
#index2850427
#% 
#!
  
#*A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability.
#@Herman M. J. Sontrop,Perry D. Moerland,René van den Ham,Marcel J. T. Reinders,Wim F. J. Verhaegh
#t2009
#cBMC Bioinformatics
#index2849892
#% 
#!
  
#*Using mechanistic Bayesian networks to identify downstream targets of the Sonic Hedgehog pathway.
#@Abhik Shah,Toyoaki Tenzen,Andrew P. McMahon,Peter J. Woolf
#t2009
#cBMC Bioinformatics
#index2849875
#% 
#!
  
#*Importance of replication in analyzing time-series gene expression data: Corticosteroid dynamics and circadian patterns in rat liver.
#@Tung T. Nguyen,Richard R. Almon,Debra C. DuBois,William J. Jusko,Ioannis P. Androulakis
#t2010
#cBMC Bioinformatics
#index2850483
#% 
#!
  
#*Web-based interrogation of gene expression signatures using EXALT.
#@Jun Wu,Qingchao Qiu,Lu Xie,Joseph Fullerton,Jian Yu,Yu Shyr,Alfred L. George Jr.,Yajun Yi
#t2009
#cBMC Bioinformatics
#index2850030
#% 
#!
  
#*ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization.
#@Enrico Glaab,Jonathan M. Garibaldi,Natalio Krasnogor
#t2009
#cBMC Bioinformatics
#index2850021
#% 
#!
  
#*The Yeast Resource Center Public Image Repository: A large database of fluorescence microscopy images.
#@Michael Riffle,Trisha N. Davis
#t2010
#cBMC Bioinformatics
#index2850434
#% 
#!
  
#*Prediction of super-secondary structure in alpha-helical and beta-barrel transmembrane proteins.
#@Van Du Tran,Philippe Chassignet,Jean-Marc Steyaert
#t2009
#cBMC Bioinformatics
#index2850140
#% 
#!
  
#*iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis.
#@Gernot Stocker,Maria Fischer,Dietmar Rieder,Gabriela Bindea,Simon Kainz,Michael Oberstolz,James G. McNally,Zlatko Trajanoski
#t2009
#cBMC Bioinformatics
#index2850039
#% 
#!
  
#*In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study.
#@Federica Chiappori,Pasqualina D'Ursi,Ivan Merelli,Luciano Milanesi,Ermanna Rovida
#t2009
#cBMC Bioinformatics
#index2850103
#% 
#!
  
#*Crossfit analysis: a novel method to characterize the dynamics of induced plant responses.
#@Jeroen J. Jansen,Nicole M. van Dam,Huub C. J. Hoefsloot,Age K. Smilde
#t2009
#cBMC Bioinformatics
#index2849873
#% 
#!
  
#*Deep proteogenomics; high throughput gene validation by multidimensional liquid chromatography and mass spectrometry of proteins from the fungal wheat pathogen .
#@Scott Bringans,James K. Hane,Tammy Casey,Kar-Chun Tan,Richard Lipscombe,Peter S. Solomon,Richard P. Oliver
#t2009
#cBMC Bioinformatics
#index2849937
#% 
#!
  
#*BS Seeker: precise mapping for bisulfite sequencing.
#@Pao-Yang Chen,Shawn Cokus,Matteo Pellegrini
#t2010
#cBMC Bioinformatics
#index2850194
#% 
#!
  
#*Protein subcellular localization prediction of eukaryotes using a knowledge-based approach.
#@Hsin-Nan Lin,Ching-Tai Chen,Ting-Yi Sung,Shinn-Ying Ho,Wen-Lian Hsu
#t2009
#cBMC Bioinformatics
#index2850048
#% 
#!
  
#*HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data.
#@Erdogan Taskesen,Renee Beekman,Jeroen de Ridder,Bas J. Wouters,Justine K. Peeters,Ivo P. Touw,Marcel J. T. Reinders,Ruud Delwel
#t2010
#cBMC Bioinformatics
#index2850472
#% 
#!
  
#*Missing value imputation for epistatic MAPs.
#@Colm Ryan,Derek Greene,Gerard Cagney,Padraig Cunningham
#t2010
#cBMC Bioinformatics
#index2850187
#% 
#!
  
#*XML-based approaches for the integration of heterogeneous bio-molecular data.
#@Marco Mesiti,Ernesto Jiménez-Ruiz,Ismael Sanz,Rafael Berlanga Llavori,Paolo Perlasca,Giorgio Valentini,David Manset
#t2009
#cBMC Bioinformatics
#index2850079
#% 
#!
  
#*PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship.
#@Inkyung Jung,Akihisa Matsuyama,Minoru Yoshida,Dongsup Kim
#t2010
#cBMC Bioinformatics
#index2850540
#% 
#!
  
#*DNA barcode analysis: a comparison of phylogenetic and statistical classification methods.
#@Frederic Austerlitz,Olivier David,Brigitte Schaeffer,Kevin Bleakley,Madalina Olteanu,Raphael Leblois,Michel Veuille,Catherine Laredo
#t2009
#cBMC Bioinformatics
#index2850131
#% 
#!
  
#*ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.
#@Lihua J. Zhu,Claude Gazin,Nathan D. Lawson,Hervé Pagès,Simon M. Lin,David S. Lapointe,Michael R. Green
#t2010
#cBMC Bioinformatics
#index2850438
#% 
#!
  
#*A Perl procedure for protein identification by Peptide Mass Fingerprinting.
#@Alessandra Tiengo,Nicola Barbarini,Sonia Troiani,Luisa Rusconi,Paolo Magni
#t2009
#cBMC Bioinformatics
#index2850124
#% 
#!
  
#*ETE: a python Environment for Tree Exploration.
#@Jaime Huerta-Cepas,Joaquín Dopazo,Toni Gabaldón
#t2010
#cBMC Bioinformatics
#index2850225
#% 
#!
  
#*Revealing and avoiding bias in semantic similarity scores for protein pairs.
#@Jing Wang,Xianxiao Zhou,Jing Zhu,Chenggui Zhou,Zheng Guo
#t2010
#cBMC Bioinformatics
#index2850388
#% 
#!
  
#*Evaluating the accuracy of a functional SNP annotation system.
#@Terry H. Shen,Christopher S. Carlson,Peter Tarczy-Hornoch
#t2009
#cBMC Bioinformatics
#index2850113
#% 
#!
  
#*Phenotypic and genotypic data integration and exploration through a web-service architecture.
#@Angelo Nuzzo,Alberto Riva,Riccardo Bellazzi
#t2009
#cBMC Bioinformatics
#index2850086
#% 
#!
  
#*Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways.
#@Adi Mano,Tamir Tuller,Oded Béjà,Ron Y. Pinter
#t2010
#cBMC Bioinformatics
#index2850588
#% 
#!
  
#*From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways.
#@Anna Bauer-Mehren,Laura Inés Furlong,Michael Rautschka,Ferran Sanz
#t2009
#cBMC Bioinformatics
#index2850161
#% 
#!
  
#*An iterative strategy combining biophysical criteria and duration hidden Markov models for structural predictions of sigmapromoters.
#@Ronna R. Mallios,David M. Ojcius,David H. Ardell
#t2009
#cBMC Bioinformatics
#index2849994
#% 
#!
  
#*CDK-Taverna: an open workflow environment for cheminformatics.
#@Thomas Kuhn,Egon L. Willighagen,Achim Zielesny,Christoph Steinbeck
#t2010
#cBMC Bioinformatics
#index2850336
#% 
#!
  
#*A structure filter for the Eukaryotic Linear Motif Resource.
#@Allegra Via,Cathryn M. Gould,Christine Gemünd,Toby J. Gibson,Manuela Helmer-Citterich
#t2009
#cBMC Bioinformatics
#index2849901
#% 
#!
  
#*Identification of recurrent regions of copy-number variants across multiple individuals.
#@Teo Shu Mei,Agus Salim,Stefano Calza,Ku Chee Seng,Chia Kee Seng,Yudi Pawitan
#t2010
#cBMC Bioinformatics
#index2850372
#% 
#!
  
#*Evaluation of a large-scale biomedical data annotation initiative.
#@Ronilda Lacson,Erik Pitzer,Christian Hinske,Pedro A. F. Galante,Lucila Ohno-Machado
#t2009
#cBMC Bioinformatics
#index2850104
#% 
#!
  
#*Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions.
#@Yosuke Ozawa,Rintaro Saito,Shigeo Fujimori,Hisashi Kashima,Masamichi Ishizaka,Hiroshi Yanagawa,Etsuko Miyamoto-Sato,Masaru Tomita
#t2010
#cBMC Bioinformatics
#index2850446
#% 
#!
  
#*CGHpower: exploring sample size calculations for chromosomal copy number experiments.
#@Ilari Scheinin,Jose A. Ferreira,Sakari Knuutila,Gerrit Meijer,Mark A. van de Wiel,Bauke Ylstra
#t2010
#cBMC Bioinformatics
#index2850298
#% 
#!
  
#*eHive: An Artificial Intelligence workflow system for genomic analysis.
#@Jessica Severin,Kathryn Beal,Albert J. Vilella,Stephen Fitzgerald,Michael Schuster,Leo Gordon,Abel Ureta-Vidal,Paul Flicek,Javier Herrero
#t2010
#cBMC Bioinformatics
#index2850520
#% 
#!
  
#*Detection of gene orthology from gene co-expression and protein interaction networks.
#@Fadi Towfic,Susan VanderPlas,Casey A. Oliver,Oliver Couture,Christopher K. Tuggle,M. Heather West Greenlee,Vasant Honavar
#t2010
#cBMC Bioinformatics
#index2850491
#% 
#!
  
#*RCMAT: a regularized covariance matrix approach to testing gene sets.
#@Phillip D. Yates,Mark A. Reimers
#t2009
#cBMC Bioinformatics
#index2849856
#% 
#!
  
#*Predictors of natively unfolded proteins: unanimous consensus score to detect a twilight zone between order and disorder in generic datasets.
#@Antonio Deiana,Andrea Giansanti
#t2010
#cBMC Bioinformatics
#index2850361
#% 
#!
  
#*Automatic prediction of catalytic residues by modeling residue structural neighborhood.
#@Elisa Cilia,Andrea Passerini
#t2010
#cBMC Bioinformatics
#index2850316
#% 
#!
  
#*Physicochemical property distributions for accurate and rapid pairwise protein homology detection.
#@Bobbie-Jo M. Webb-Robertson,Kyle G. Ratuiste,Christopher S. Oehmen
#t2010
#cBMC Bioinformatics
#index2850512
#% 
#!
  
#*An automated proteomic data analysis workflow for mass spectrometry.
#@Ken Pendarvis,Ranjit Kumar,Shane C. Burgess,Bindu Nanduri
#t2009
#cBMC Bioinformatics
#index2850132
#% 
#!
  
#*Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway of .
#@Aarti Garg,Rupinder Tewari,Gajendra P. S. Raghava
#t2010
#cBMC Bioinformatics
#index2850531
#% 
#!
  
#*Strategies for analyzing highly enriched IP-chip datasets.
#@Simon R. V. Knott,Christopher J. Viggiani,Oscar M. Aparicio,Simon Tavaré
#t2009
#cBMC Bioinformatics
#index2849928
#% 
#!
  
#*Challenges for automatically extracting molecular interactions from full-text articles.
#@Tara McIntosh,James R. Curran
#t2009
#cBMC Bioinformatics
#index2849967
#% 
#!
  
#*Heuristics for the inversion median problem.
#@Vaibhav Rajan,Andrew Wei Xu,Yu Lin,Krister M. Swenson,Bernard M. E. Moret
#t2010
#cBMC Bioinformatics
#index2850584
#% 
#!
  
#*Prediction of novel miRNAs and associated target genes in .
#@Trupti Joshi,Zhe Yan,Marc Libault,Dong-Hoon Jeong,Sunhee Park,Pamela J. Green,D. Janine Sherrier,Andrew Farmer,Greg May,Blake C. Meyers,Dong Xu,Gary Stacey
#t2010
#cBMC Bioinformatics
#index2850574
#% 
#!
  
#*In silico method for systematic analysis of feature importance in microRNA-mRNA interactions.
#@Jiamin Xiao,Yizhou Li,Kelong Wang,Zhining Wen,Menglong Li,Lifang Zhang,Xuanmin Guang
#t2009
#cBMC Bioinformatics
#index2849909
#% 
#!
  
#*Gene regulatory networks modelling using a dynamic evolutionary hybrid.
#@Ioannis A. Maraziotis,Andrei Dragomir,Dimitris Thanos
#t2010
#cBMC Bioinformatics
#index2850215
#% 
#!
  
#*Prodigal: prokaryotic gene recognition and translation initiation site identification.
#@Doug Hyatt,Gwo-Liang Chen,Philip F. LoCascio,Miriam L. Land,Frank W. Larimer,Loren J. Hauser
#t2010
#cBMC Bioinformatics
#index2850354
#% 
#!
  
#*Identifying interactions in the time and frequency domains in local and global networks - A Granger Causality Approach.
#@Cunlu Zou,Christophe Ladroue,Shuixia Guo,Jianfeng Feng
#t2010
#cBMC Bioinformatics
#index2850217
#% 
#!
  
#*Structural alphabets derived from attractors in conformational space.
#@Alessandro Pandini,Arianna Fornili,Jens Kleinjung
#t2010
#cBMC Bioinformatics
#index2850305
#% 
#!
  
#*an integrated approach for the analysis, visualisation and data management of Multiplex Ligation-dependent Probe Amplification.
#@Ronald van Eijk,Paul H. C. Eilers,Remco Natté,Anne-Marie Cleton-Jansen,Hans Morreau,Tom van Wezel,Jan Oosting
#t2010
#cBMC Bioinformatics
#index2850362
#% 
#!
  
#*A boundary delimitation algorithm to approximate cell soma volumes of bipolar cells from topographical data obtained by scanning probe microscopy.
#@Patrick Happel,Kerstin Moller,Ralf Kunz,Irmgard D. Dietzel
#t2010
#cBMC Bioinformatics
#index2850346
#% 
#!
  
#*KDoQ: using docking based energy scores to develop ligand based model for predicting antibacterials.
#@Aarti Garg,Rupinder Tewari,Gajendra P. S. Raghava
#t2010
#cBMC Bioinformatics
#index2850347
#% 
#!
  
#*Bayesian statistical modelling of human protein interaction network incorporating protein disorder information.
#@Svetlana Bulashevska,Alla Bulashevska,Roland Eils
#t2010
#cBMC Bioinformatics
#index2850251
#% 
#!
  
#*APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility.
#@Jun-Feng Xia,Xing-Ming Zhao,Jiangning Song,De-Shuang Huang
#t2010
#cBMC Bioinformatics
#index2850196
#% 
#!
  
#*Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models.
#@Mukul S. Bansal,J. Gordon Burleigh,Oliver Eulenstein
#t2010
#cBMC Bioinformatics
#index2850545
#% 
#!
  
#*MULTI-K: accurate classification of microarray subtypes using ensemble k-means clustering.
#@Eun-Youn Kim,Seon-Young Kim,Daniel A. Ashlock,Dougu Nam
#t2009
#cBMC Bioinformatics
#index2849987
#% 
#!
  
#*Prediction of epigenetically regulated genes in breast cancer cell lines.
#@Leandro A. Loss,Anguraj Sadanandam,Steffen Durinck,Shivani Nautiya,Diane Flaucher,Victoria E. H. Carlton,Martin Moorhead,Yontao Lu,Joe W. Gray,Malek Faham,Paul T. Spellman,Bahram Parvin
#t2010
#cBMC Bioinformatics
#index2850399
#% 
#!
  
#*Ovarian cancer classification based on dimensionality reduction for SELDI-TOF data.
#@Kai-Lin Tang,Tong-Hua Li,Wen-Wei Xiong,Kai Chen
#t2010
#cBMC Bioinformatics
#index2850392
#% 
#!
  
#*Transcription factor site dependencies in human, mouse and rat genomes.
#@Andrija Tomovic,Michael Stadler,Edward J. Oakeley
#t2009
#cBMC Bioinformatics
#index2849870
#% 
#!
  
#*Protopia: a protein-protein interaction tool.
#@Alejandro Real-Chicharro,Iván Ruiz Mostazo,Ismael Navas Delgado,Amine Kerzazi,Othmane Chniber,Francisca Sánchez-Jiménez,Miguel Angel Medina,José Francisco Aldana Montes
#t2009
#cBMC Bioinformatics
#index2850067
#% 
#!
  
#*Automatic symptom name normalization in clinical records of traditional Chinese medicine.
#@Yaqiang Wang,Zhonghua Yu,Yongguang Jiang,Kaikuo Xu,Xia Chen
#t2010
#cBMC Bioinformatics
#index2850260
#% 
#!
  
#*A theoretical approach to spot active regions in antimicrobial proteins.
#@Marc Torrent,Victòria M. Nogués,Ester Boix
#t2009
#cBMC Bioinformatics
#index2849919
#% 
#!
  
#*Prediction of novel precursor miRNAs using a context-sensitive hidden Markov model (CSHMM).
#@Sumeet Agarwal,Candida Vaz,Alok Bhattacharya,Ashwin Srinivasan
#t2010
#cBMC Bioinformatics
#index2850594
#% 
#!
  
#*Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data.
#@Ravi Gupta,Priyankara Wikramasinghe,Anirban Bhattacharyya,Francisco A. Perez,Sharmistha Pal,Ramana V. Davuluri
#t2010
#cBMC Bioinformatics
#index2850527
#% 
#!
  
#*QPCR: Application for real-time PCR data management and analysis.
#@Stephan Pabinger,Gerhard G. Thallinger,René Snajder,Heiko Eichhorn,Robert Rader,Zlatko Trajanoski
#t2009
#cBMC Bioinformatics
#index2849968
#% 
#!
  
#*Probabilistic retrieval and visualization of biologically relevant microarray experiments.
#@José Caldas,Nils Gehlenborg,Ali Faisal,Alvis Brazma,Samuel Kaski
#t2009
#cBMC Bioinformatics
#index2850097
#% 
#!
  
#*Power and sample size estimation in microarray studies.
#@Wei-Jiun Lin,Huey-miin Hsueh,James J. Chen
#t2010
#cBMC Bioinformatics
#index2850389
#% 
#!
  
#*Towards a career in bioinformatics.
#@Shoba Ranganathan
#t2009
#cBMC Bioinformatics
#index2850159
#% 
#!
  
#*Detecting internally symmetric protein structures.
#@Changhoon Kim,Jodi Basner,Byungkook Lee
#t2010
#cBMC Bioinformatics
#index2850382
#% 
#!
  
#*Quantifying the relationship between sequence and three-dimensional structure conservation in RNA.
#@Emidio Capriotti,Marc A. Martí-Renom
#t2010
#cBMC Bioinformatics
#index2850290
#% 
#!
  
#*BABAR: an R package to simplify the normalisation of common reference design microarray-based transcriptomic datasets.
#@Mark J. Alston,John Seers,Jay C. D. Hinton,Sacha Lucchini
#t2010
#cBMC Bioinformatics
#index2850208
#% 
#!
  
#*MKEM: a Multi-level Knowledge Emergence Model for mining undiscovered public knowledge.
#@Ali Zeeshan Ijaz,Min Song,Doheon Lee
#t2010
#cBMC Bioinformatics
#index2850567
#%956562
#%472256
#%957101
#%2067
#%956172
#%956180
#%95447
#%959721
#!
  
#*Free energy estimation of short DNA duplex hybridizations.
#@Dan C. Tulpan,Mirela Andronescu,Serge Leger
#t2010
#cBMC Bioinformatics
#index2850435
#% 
#!
  
#*dConsensus: a tool for displaying domain assignments by multiple structure-based algorithms and for construction of a consensus assignment.
#@Kieran Alden,Stella Veretnik,Philip E. Bourne
#t2010
#cBMC Bioinformatics
#index2850253
#% 
#!
  
#*A fast indexing approach for protein structure comparison.
#@Lei Zhang,James Bailey,Arun S. Konagurthu,Kotagiri Ramamohanarao
#t2010
#cBMC Bioinformatics
#index2850557
#% 
#!
  
#*Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach.
#@Dirk Repsilber,Sabine Kern,Anna Telaar,Gerhard Walzl,Gillian F. Black,Joachim Selbig,Shreemanta K. Parida,Stefan H. E. Kaufmann,Marc Jacobsen
#t2010
#cBMC Bioinformatics
#index2850325
#% 
#!
  
#*HDAPD: a web tool for searching the disease-associated protein structures.
#@Yi-Ruen Lin,Hsin-Yuan Wei,Tsung-Lin Tsai,Thy-Hou Lin
#t2010
#cBMC Bioinformatics
#index2850242
#% 
#!
  
#*A novel scoring function for discriminating hyperthermophilic and mesophilic proteins with application to predicting relative thermostability of protein mutants.
#@Yunqi Li,C. Russell Middaugh,Jianwen Fang
#t2010
#cBMC Bioinformatics
#index2850455
#% 
#!
  
#*Knowledge-based variable selection for learning rules from proteomic data.
#@Jonathan L. Lustgarten,Shyam Visweswaran,Robert P. Bowser,William R. Hogan,Vanathi Gopalakrishnan
#t2009
#cBMC Bioinformatics
#index2850066
#% 
#!
  
#*iQuantitator: A tool for protein expression inference using iTRAQ.
#@John Schwacke,Elizabeth G. Hill,Edward L. Krug,Susana Comte-Walters,Kevin L. Schey
#t2009
#cBMC Bioinformatics
#index2849883
#% 
#!
  
#*Genoviz Software Development Kit: Java tool kit for building genomics visualization applications.
#@Gregg A. Helt,John W. Nicol,Ed Erwin,Eric Blossom,Steven G. Blanchard Jr.,Stephen A. Chervitz,Cyrus L. Harmon,Ann E. Loraine
#t2009
#cBMC Bioinformatics
#index2849861
#% 
#!
  
#*HPD: an online integrated human pathway database enabling systems biology studies.
#@Sudhir R. Chowbina,Xiaogang Wu,Fan Zhang,Peter M. Li,Ragini Pandey,Harini N. Kasamsetty,Jake Y. Chen
#t2009
#cBMC Bioinformatics
#index2850087
#% 
#!
  
#*Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition.
#@Lei Chen,Kai-Yan Feng,Yu-Dong Cai,Kuo-Chen Chou,Hai-Peng Li
#t2010
#cBMC Bioinformatics
#index2850521
#% 
#!
  
#*Learning to classify species with barcodes.
#@Paola Bertolazzi,Giovanni Felici,Emanuel Weitschek
#t2009
#cBMC Bioinformatics
#index2850057
#% 
#!
  
#*Multi-task learning for cross-platform siRNA efficacy prediction: an in-silico study.
#@Qi Liu,Qian Xu,Vincent Wenchen Zheng,Hong Xue,Zhiwei Cao,Qiang Yang
#t2010
#cBMC Bioinformatics
#index2850476
#% 
#!
  
#*Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins.
#@Norman E. Davey,Richard J. Edwards,Denis C. Shields
#t2010
#cBMC Bioinformatics
#index2850226
#% 
#!
  
#*MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement.
#@Guanqun Shi,Liqing Zhang,Tao Jiang
#t2010
#cBMC Bioinformatics
#index2850233
#% 
#!
  
#*MimoSA: a system for minimotif annotation.
#@Jay Vyas,Ronald J. Nowling,Thomas Meusburger,David Sargeant,Krishna Kadaveru,Michael R. Gryk,Vamsi Kundeti,Sanguthevar Rajasekaran,Martin R. Schiller
#t2010
#cBMC Bioinformatics
#index2850207
#% 
#!
  
#*A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes.
#@Guofeng Meng,Axel Mosig,Martin Vingron
#t2010
#cBMC Bioinformatics
#index2850186
#% 
#!
  
#*Nonnegative principal component analysis for mass spectral serum profiles and biomarker discovery.
#@Henry Han
#t2010
#cBMC Bioinformatics
#index2850587
#% 
#!
  
#*Selecting high-dimensional mixed graphical models using minimal AIC or BIC forests.
#@David Edwards,Gabriel C. G. de Abreu,Rodrigo Labouriau
#t2010
#cBMC Bioinformatics
#index2850177
#% 
#!
  
#*Mocapy++ - A toolkit for inference and learning in dynamic Bayesian networks.
#@Martin Paluszewski,Thomas Hamelryck
#t2010
#cBMC Bioinformatics
#index2850280
#% 
#!
  
#*Predicting the protein-protein interactions using primary structures with predicted protein surface.
#@Darby Tien-Hao Chang,Yu-Tang Syu,Po-Chang Lin
#t2010
#cBMC Bioinformatics
#index2850548
#% 
#!
  
#*Analysis of DNA strand-specific differential expression with high density tiling microarrays.
#@Luis Quintales,Mar Sánchez,Francisco Antequera
#t2010
#cBMC Bioinformatics
#index2850420
#% 
#!
  
#*vFitness: a web-based computing tool for improving estimation of HIV-1 fitness experiments.
#@Jingming Ma,Carrie Dykes,Tao Wu,Yangxin Huang,Lisa M. Demeter,Hulin Wu
#t2010
#cBMC Bioinformatics
#index2850168
#% 
#!
  
#*Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb.
#@Kevin Nagel,Antonio Jimeno-Yepes,Dietrich Rebholz-Schuhmann
#t2009
#cBMC Bioinformatics
#index2850141
#% 
#!
  
#*A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins.
#@Mats Ensterö,Örjan Åkerborg,Daniel Lundin,Bei Wang,Terrence S. Furey,Marie Öhman,Jens Lagergren
#t2010
#cBMC Bioinformatics
#index2850206
#% 
#!
  
#*Incorporating gene co-expression network in identification of cancer prognosis markers.
#@Shuangge Ma,Mingyu Shi,Yang Li,Danhui Yi,Ben-Chang Shia
#t2010
#cBMC Bioinformatics
#index2850306
#% 
#!
  
#*Predicting sulfotyrosine sites using the random forest algorithm with significantly improved prediction accuracy.
#@Zheng Rong Yang
#t2009
#cBMC Bioinformatics
#index2849902
#% 
#!
  
#*Improved mutation tagging with gene identifiers applied to membrane protein stability prediction.
#@Rainer Winnenburg,Conrad Plake,Michael Schroeder
#t2009
#cBMC Bioinformatics
#index2850160
#% 
#!
  
#*Response network analysis of differential gene expression in human epithelial lung cells during avian influenza infections.
#@Ken Tatebe,Ahmet Zeytun,Ruy M. Ribeiro,Robert Hoffmann,Kevin S. Harrod,Christian V. Forst
#t2010
#cBMC Bioinformatics
#index2850436
#% 
#!
  
#*Efficient oligonucleotide probe selection for pan-genomic tiling arrays.
#@Adam M. Phillippy,Xiangyu Deng,Wei Zhang,Steven L. Salzberg
#t2009
#cBMC Bioinformatics
#index2849931
#% 
#!
  
#*p3d - Python module for structural bioinformatics.
#@Christian Fufezan,Michael Specht
#t2009
#cBMC Bioinformatics
#index2850012
#% 
#!
  
#*The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections.
#@Ivan Merelli,Andrea Caprera,Alessandra Stella,Marcello Del Corvo,Luciano Milanesi,Barbara Lazzari
#t2009
#cBMC Bioinformatics
#index2850070
#% 
#!
  
#*Novel software package for cross-platform transcriptome analysis (CPTRA).
#@Xin Zhou,Zhen Su,R. Douglas Sammons,Yanhui Peng,Patrick J. Tranel,C. Neal Stewart Jr.,Joshua S. Yuan
#t2009
#cBMC Bioinformatics
#index2850063
#% 
#!
  
#*Enrichment of homologs in insignificant BLAST hits by co-complex network alignment.
#@Like Fokkens,Sandra M. C. Botelho,Jos Boekhorst,Berend Snel
#t2010
#cBMC Bioinformatics
#index2850315
#% 
#!
  
#*Extraction of human kinase mutations from literature, databases and genotyping studies.
#@Martin Krallinger,José M. G. Izarzugaza,Carlos Rodríguez Penagos,Alfonso Valencia
#t2009
#cBMC Bioinformatics
#index2850078
#% 
#!
  
#*A hybrid approach to protein folding problem integrating constraint programming with local search.
#@Abu Zafer M. Dayem Ullah,Kathleen Steinhöfel
#t2010
#cBMC Bioinformatics
#index2850564
#% 
#!
  
#*Multiple structure alignment and consensus identification for proteins.
#@Ivaylo Ilinkin,Jieping Ye,Ravi Janardan
#t2010
#cBMC Bioinformatics
#index2850297
#% 
#!
  
#*Washing scaling of GeneChip microarray expression.
#@Hans Binder,Knut Krohn,Conrad J. Burden
#t2010
#cBMC Bioinformatics
#index2850335
#% 
#!
  
#*Prediction of protein structural classes for low-homology sequences based on predicted secondary structure.
#@Jian-Yi Yang,Zhen-Ling Peng,Xin Chen
#t2010
#cBMC Bioinformatics
#index2850566
#% 
#!
  
#*Inferring within-patient HIV-1 evolutionary dynamics under anti-HIV therapy using serial virus samples with vSPA.
#@Naoki Hasegawa,Wataru Sugiura,Junko Shibata,Masakazu Matsuda,Fengrong Ren,Hiroshi Tanaka
#t2009
#cBMC Bioinformatics
#index2849895
#% 
#!
  
#*Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information.
#@Marcio L. Acencio,Ney Lemke
#t2009
#cBMC Bioinformatics
#index2849952
#% 
#!
  
#*An experimental loop design for the detection of constitutional chromosomal aberrations by array CGH.
#@Joke Allemeersch,Steven Van Vooren,Femke Hannes,Bart De Moor,Joris Robert Vermeesch,Yves Moreau
#t2009
#cBMC Bioinformatics
#index2849917
#% 
#!
  
#*Kavosh: a new algorithm for finding network motifs.
#@Zahra Razaghi Moghadam Kashani,Hayedeh Ahrabian,Elahe Elahi,Abbas Nowzari-Dalini,Elnaz Saberi Ansari,Sahar Asadi,Shahin Mohammadi,Falk Schreiber,Ali Masoudi-Nejad
#t2009
#cBMC Bioinformatics
#index2849881
#% 
#!
  
#*STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data.
#@Daniel Jupiter,Hailin Chen,Vincent VanBuren
#t2009
#cBMC Bioinformatics
#index2849959
#% 
#!
  
#*Exploratory and inferential analysis of gene cluster neighborhood graphs.
#@Theresa Scharl,Ingo Voglhuber,Friedrich Leisch
#t2009
#cBMC Bioinformatics
#index2849945
#% 
#!
  
#*Exploratory visual analysis of conserved domains on multiple sequence alignments.
#@T. J. Jankun-Kelly,Andrew D. Lindeman,Susan M. Bridges
#t2009
#cBMC Bioinformatics
#index2850123
#% 
#!
  
#*Characterizing environmental and phenotypic associations using information theory and electronic health records.
#@Xiaoyan Wang,George Hripcsak,Carol Friedman
#t2009
#cBMC Bioinformatics
#index2850056
#% 
#!
  
#*Network analysis of genes regulated in renal diseases: implications for a molecular-based classification.
#@Suresh K. Bhavnani,Felix Eichinger,Sebastian Martini,Paul Saxman,H. V. Jagadish,Matthias Kretzler
#t2009
#cBMC Bioinformatics
#index2850150
#% 
#!
  
#*A method of predicting changes in human gene splicing induced by genetic variants in context of cis-acting elements.
#@Alexander G. Churbanov,Igor Vorechovsky,Chindo Hicks
#t2010
#cBMC Bioinformatics
#index2850279
#% 
#!
  
#*A methodology for the analysis of differential coexpression across the human lifespan.
#@Jesse Gillis,Paul Pavlidis
#t2009
#cBMC Bioinformatics
#index2849888
#% 
#!
  
#*Predicting protein-protein binding sites in membrane proteins.
#@Andrew J. Bordner
#t2009
#cBMC Bioinformatics
#index2849938
#% 
#!
  
#*A white-box approach to microarray probe response characterization: the BaFL pipeline.
#@Kevin J. Thompson,Hrishikesh Deshmukh,Jeffrey L. Solka,Jennifer W. Weller
#t2009
#cBMC Bioinformatics
#index2849924
#% 
#!
  
#*Analysis of X-ray Structures of Matrix Metalloproteinases via Chaotic Map Clustering.
#@Ilenia Giangreco,Orazio Nicolotti,Angelo Carotti,Francesco De Carlo,Gianfranco Gargano,Roberto Bellotti
#t2010
#cBMC Bioinformatics
#index2916200
#% 
#!
  
#*Uncovering packaging features of co-regulated modules based on human protein interaction and transcriptional regulatory networks.
#@Lina Chen,Hong Wang,Liangcai Zhang,Wan Li,Qian Wang,Yukui Shang,Yuehan He,Weiming He,Xu Li,Jingxie Tai,Xia Li
#t2010
#cBMC Bioinformatics
#index2916236
#% 
#!
  
#*Predicting -turns and their types using predicted backbone dihedral angles and secondary structures.
#@Petros Kountouris,Jonathan D. Hirst
#t2010
#cBMC Bioinformatics
#index2916172
#% 
#!
  
#*MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heuristics.
#@Raphaël Helaers,Michel C. Milinkovitch
#t2010
#cBMC Bioinformatics
#index2916203
#% 
#!
  
#*Robust probabilistic superposition and comparison of protein structures.
#@Martin Mechelke,Michael Habeck
#t2010
#cBMC Bioinformatics
#index2916219
#% 
#!
  
#*CMASA: an accurate algorithm for detecting local protein structural similarity and its application to enzyme catalytic site annotation.
#@Gong-Hua Li,Jing-Fei Huang
#t2010
#cBMC Bioinformatics
#index2916339
#% 
#!
  
#*Geoseq: a tool for dissecting deep-sequencing datasets.
#@James Gurtowski,Anthony Cancio,Hardik Shah,Chaya Levovitz,Ajish George,Robert Homann,Ravi Sachidanandam
#t2010
#cBMC Bioinformatics
#index2916255
#% 
#!
  
#*Optimizing Transformations for Automated, High Throughput Analysis of Flow Cytometry Data.
#@Greg Finak,Juan-Manuel Perez,Andrew Weng,Raphael Gottardo
#t2010
#cBMC Bioinformatics
#index2916276
#% 
#!
  
#*A Dynamic Noise Level Algorithm for Spectral Screening of Peptide MS/MS Spectra.
#@Hua Xu,Michael A. Freitas
#t2010
#cBMC Bioinformatics
#index2916193
#% 
#!
  
#*Computational analysis and modeling of cleavage by the immunoproteasome and the constitutive proteasome.
#@Carmen M. Diez-Rivero,Esther M. Lafuente,Pedro A. Reche
#t2010
#cBMC Bioinformatics
#index2916146
#% 
#!
  
#*TOPSAN: a collaborative annotation environment for structural genomics.
#@Dana Weekes,S. Sri Krishna,Constantina Bakolitsa,Ian A. Wilson,Adam Godzik,John Wooley
#t2010
#cBMC Bioinformatics
#index2916332
#% 
#!
  
#*FragViz: visualization of fragmented networks.
#@Miha Stajdohar,Minca Mramor,Blaz Zupan,Janez Demsar
#t2010
#cBMC Bioinformatics
#index2916292
#% 
#!
  
#*Microarray meta-analysis database (MDB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database.
#@Wei-Chung Cheng,Min-Lung Tsai,Cheng-Wei Chang,Ching-Lung Huang,Chaang-Ray Chen,Wun-Yi Shu,Yun-Shien Lee,Tzu-Hao Wang,Ji-Hong Hong,Chia-Yang Li,Ian C. Hsu
#t2010
#cBMC Bioinformatics
#index2916239
#% 
#!
  
#*Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development.
#@Sébastien Terrat,Eric Peyretaillade,Olivier Gonçalves,Eric Dugat-Bony,Fabrice Gravelat,Anne Moné,Corinne Biderre-Petit,Delphine Boucher,Julien Troquet,Pierre Peyret
#t2010
#cBMC Bioinformatics
#index2916321
#% 
#!
  
#*Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome.
#@Thomas M. Asbury,Matt Mitman,Jijun Tang,W. Jim Zheng
#t2010
#cBMC Bioinformatics
#index2916246
#% 
#!
  
#*Applications of a formal approach to decipher discrete genetic networks.
#@Fabien Corblin,Eric Fanchon,Laurent Trilling
#t2010
#cBMC Bioinformatics
#index2916182
#% 
#!
  
#*Consistency, comprehensiveness, and compatibility of pathway databases.
#@Donny Soh,Difeng Dong,Yike Guo,Limsoon Wong
#t2010
#cBMC Bioinformatics
#index2916142
#% 
#!
  
#*S3DB core: a framework for RDF generation and management in bioinformatics infrastructures.
#@Jonas S. Almeida,Helena F. Deus,Wolfgang Maass
#t2010
#cBMC Bioinformatics
#index2916181
#% 
#!
  
#*Forward-time simulation of realistic samples for genome-wide association studies.
#@Bo Peng,Christopher I. Amos
#t2010
#cBMC Bioinformatics
#index2916210
#% 
#!
  
#*A global optimization algorithm for protein surface alignment.
#@Paola Bertolazzi,Concettina Guerra,Giampaolo Liuzzi
#t2010
#cBMC Bioinformatics
#index2916230
#% 
#!
  
#*CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse.
#@Olivier Friard,Angela Re,Daniela Taverna,Michele De Bortoli,Davide Corà
#t2010
#cBMC Bioinformatics
#index2916273
#% 
#!
  
#*Circadian signatures in rat liver: from gene expression to pathways.
#@Meric A. Ovacik,Siddharth Sukumaran,Richard R. Almon,Debra C. DuBois,William J. Jusko,Ioannis P. Androulakis
#t2010
#cBMC Bioinformatics
#index2916301
#% 
#!
  
#*Automatic structure classification of small proteins using random forest.
#@Pooja Jain,Jonathan D. Hirst
#t2010
#cBMC Bioinformatics
#index2916312
#% 
#!
  
#*A factor model to analyze heterogeneity in gene expression.
#@Yuna Blum,Guillaume Le Mignon,Sandrine Lagarrigue,David Causeur
#t2010
#cBMC Bioinformatics
#index2916283
#% 
#!
  
#*Multivariate meta-analysis of proteomics data from human prostate and colon tumours.
#@Lina Hultin Rosenberg,Bo Franzén,Gert Auer,Janne Lehtiö,Jenny Forshed
#t2010
#cBMC Bioinformatics
#index2916145
#% 
#!
  
#*Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering.
#@Eva Freyhult,Mattias Landfors,Jenny Önskog,Torgeir R. Hvidsten,Patrik Rydén
#t2010
#cBMC Bioinformatics
#index2916330
#% 
#!
  
#*TESTLoc: protein subcellular localization prediction from EST data.
#@Yao Qing Shen,Gertraud Burger
#t2010
#cBMC Bioinformatics
#index2916266
#% 
#!
  
#*The structural and content aspects of abstracts versus bodies of full text journal articles are different.
#@K. Bretonnel Cohen,Helen L. Johnson,Karin Verspoor,Christophe Roeder,Lawrence Hunter
#t2010
#cBMC Bioinformatics
#index2916163
#% 
#!
  
#*Robust test method for time-course microarray experiments.
#@Insuk Sohn,Kouros Owzar,Stephen L. George,Sujong Kim,Sin-Ho Jung
#t2010
#cBMC Bioinformatics
#index2916192
#% 
#!
  
#*Harvest: an open-source tool for the validation and improvement of peptide identification metrics and fragmentation exploration.
#@Leo C. McHugh,Jonathan W. Arthur
#t2010
#cBMC Bioinformatics
#index2916171
#% 
#!
  
#*MultiRTA: A simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes.
#@Andrew J. Bordner,Hans D. Mittelmann
#t2010
#cBMC Bioinformatics
#index2916149
#% 
#!
  
#*Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model.
#@Jessica L. Larson,Guo-Cheng Yuan
#t2010
#cBMC Bioinformatics
#index2916289
#% 
#!
  
#*Multivariate Hawkes process models of the occurrence of regulatory elements.
#@Lisbeth Carstensen,Albin Sandelin,Ole Winther,Niels R. Hansen
#t2010
#cBMC Bioinformatics
#index2916157
#% 
#!
  
#*Candidate gene prioritization by network analysis of differential expression using machine learning approaches.
#@Daniela Nitsch,Joana P. Gonçalves,Fabian Ojeda,Bart De Moor,Yves Moreau
#t2010
#cBMC Bioinformatics
#index2916275
#% 
#!
  
#*Deriving enzymatic and taxonomic signatures of metagenomes from short read data.
#@Uri Weingart,Erez Persi,Uri Gophna,David Horn
#t2010
#cBMC Bioinformatics
#index2916282
#% 
#!
  
#*Filtering, FDR and power.
#@Maarten van Iterson,Judith M. Boer,Renée X. de Menezes
#t2010
#cBMC Bioinformatics
#index2916331
#% 
#!
  
#*Computationally efficient flux variability analysis.
#@Steinn Gudmundsson,Ines Thiele
#t2010
#cBMC Bioinformatics
#index2916220
#% 
#!
  
#*SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data.
#@Murray P. Cox,Daniel A. Peterson,Patrick J. Biggs
#t2010
#cBMC Bioinformatics
#index2916201
#% 
#!
  
#*A classification approach for genotyping viral sequences based on multidimensional scaling and linear discriminant analysis.
#@Ji Woong Kim,Yongju Ahn,Kichan Lee,Sung-Hee Park,Sangsoo Kim
#t2010
#cBMC Bioinformatics
#index2916237
#% 
#!
  
#*Automatic detection of anchor points for multiple sequence alignment.
#@Florian Pitschi,Claudine Devauchelle,Eduardo Corel
#t2010
#cBMC Bioinformatics
#index2916164
#% 
#!
  
#*Quantification and deconvolution of asymmetric LC-MS peaks using the bi-Gaussian mixture model and statistical model selection.
#@Tianwei Yu,Hesen Peng
#t2010
#cBMC Bioinformatics
#index2916178
#% 
#!
  
#*Intensity dependent estimation of noise in microarrays improves detection of differentially expressed genes.
#@Amit Zeisel,Amnon Amir,Wolfgang J. Köstler,Eytan Domany
#t2010
#cBMC Bioinformatics
#index2916296
#% 
#!
  
#*Detection of copy number variation from array intensity and sequencing read depth using a stepwise Bayesian model.
#@Zhengdong D. Zhang,Mark B. Gerstein
#t2010
#cBMC Bioinformatics
#index2916211
#% 
#!
  
#*Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs.
#@Vamsi Kundeti,Sanguthevar Rajasekaran,Hieu Dinh,Matthew Vaughn,Vishal Thapar
#t2010
#cBMC Bioinformatics
#index2916154
#% 
#!
  
#*Application of machine learning methods to histone methylation ChIP-Seq data reveals H4R3me2 globally represses gene expression.
#@Xiaojiang Xu,Stephen Hoang,Marty W. Mayo,Stefan Bekiranov
#t2010
#cBMC Bioinformatics
#index2916247
#% 
#!
  
#*Computing H/D-Exchange rates of single residues from data of proteolytic fragments.
#@Ernst Althaus,Stefan Canzar,Carsten Ehrler,Mark R. Emmett,Andreas Karrenbauer,Alan G. Marshall,Anke Meyer-Bäse,Jeremiah D. Tipton,Huimin Zhang
#t2010
#cBMC Bioinformatics
#index2916148
#% 
#!
  
#*OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data.
#@Philip Wenig,Juergen Odermatt
#t2010
#cBMC Bioinformatics
#index2916311
#% 
#!
  
#*QTLminer: identifying genes regulating quantitative traits.
#@Rudi Alberts,Klaus Schughart
#t2010
#cBMC Bioinformatics
#index2916195
#% 
#!
  
#*The oligodeoxynucleotide sequences corresponding to never-expressed peptide motifs are mainly located in the non-coding strand.
#@Giovanni Capone,Giuseppe Novello,Candida Fasano,Brett Trost,Mikelis G. Bickis,Anthony J. Kusalik,Darja Kanduc
#t2010
#cBMC Bioinformatics
#index2916188
#% 
#!
  
#*Survival dimensionality reduction (SDR): development and clinical application of an innovative approach to detect epistasis in presence of right-censored data.
#@Lorenzo Beretta,Alessandro Santaniello,Piet L. C. M. van Riel,Marieke J. H. Coenen,Raffaella Scorza
#t2010
#cBMC Bioinformatics
#index2916303
#% 
#!
  
#*Incorporating significant amino acid pairs to identify O-linked glycosylation sites on transmembrane proteins and non-transmembrane proteins.
#@Shu-An Chen,Tzong-Yi Lee,Yu-Yen Ou
#t2010
#cBMC Bioinformatics
#index2916334
#% 
#!
  
#*PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes.
#@Khader Shameer,Lalima L. Madan,Shivamurthy Veeranna,Balasubramanian Gopal,Ramanathan Sowdhamini
#t2010
#cBMC Bioinformatics
#index2916256
#% 
#!
  
#*RuleMonkey: software for stochastic simulation of rule-based models.
#@Joshua Colvin,Michael I. Monine,Ryan N. Gutenkunst,William S. Hlavacek,Daniel D. Von Hoff,Richard G. Posner
#t2010
#cBMC Bioinformatics
#index2916327
#% 
#!
  
#*Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models.
#@Kasper Stovgaard,Christian Andreetta,Jesper Ferkinghoff-Borg,Thomas Hamelryck
#t2010
#cBMC Bioinformatics
#index2916341
#% 
#!
  
#*Confronting two-pair primer design for enzyme-free SNP genotyping based on a genetic algorithm.
#@Cheng-Hong Yang,Yu-Huei Cheng,Li-Yeh Chuang,Hsueh-Wei Chang
#t2010
#cBMC Bioinformatics
#index2916320
#% 
#!
  
#*Using diffusion distances for flexible molecular shape comparison.
#@Yu-Shen Liu,Qi Li,Guo-Qin Zheng,Karthik Ramani,William Benjamin
#t2010
#cBMC Bioinformatics
#index2916313
#% 
#!
  
#*Estimating time since infection in early homogeneous HIV-1 samples using a poisson model.
#@Elena E. Giorgi,Bob Funkhouser,Gayathri Athreya,Alan S. Perelson,Bette T. Korber,Tanmoy Bhattacharya
#t2010
#cBMC Bioinformatics
#index2916340
#% 
#!
  
#*Scanner calibration revisited.
#@Alexander E. Pozhitkov
#t2010
#cBMC Bioinformatics
#index2916238
#% 
#!
  
#*Bioactive Conformational Generation of Small Molecules: A Comparative Analysis between Force-Field and Multiple Empirical Criteria Based Methods.
#@Fang Bai,Xiaofeng Liu,Jiabo Li,Haoyun Zhang,Hualiang Jiang,Xicheng Wang,Honglin Li
#t2010
#cBMC Bioinformatics
#index2916229
#% 
#!
  
#*Bayesian Inference of the Number of Factors in Gene-Expression Analysis: Application to Human Virus Challenge Studies.
#@Bo Chen,Minhua Chen,John William Paisley,Aimee Zaas,Christopher W. Woods,Geoffrey S. Ginsburg,Alfred Hero,Joseph Lucas,David B. Dunson,Lawrence Carin
#t2010
#cBMC Bioinformatics
#index2916265
#% 
#!
  
#*Correction: Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity.
#@Fran Supek,Kristian Vlahovicek
#t2010
#cBMC Bioinformatics
#index2916304
#% 
#!
  
#*Leukocyte Nucleus Segmentation and Nucleus Lobe Counting.
#@Yung-Kuan Chan,Meng-Hsiun Tsai,Der-Chen Huang,Zong-Han Zheng,Kun-Ding Hung
#t2010
#cBMC Bioinformatics
#index2916209
#% 
#!
  
#*MS4 - Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences.
#@Eduardo Corel,Florian Pitschi,Ivan Laprevotte,Gilles Grasseau,Gilles Didier,Claudine Devauchelle
#t2010
#cBMC Bioinformatics
#index2916179
#% 
#!
  
#*Optimizing structural modeling for a specific protein scaffold: knottins or inhibitor cystine knots.
#@Jérôme Gracy,Laurent Chiche
#t2010
#cBMC Bioinformatics
#index2916231
#% 
#!
  
#*An improved classification of G-protein-coupled receptors using sequence-derived features.
#@Zhen-Ling Peng,Jian-Yi Yang,Xin Chen
#t2010
#cBMC Bioinformatics
#index2916224
#% 
#!
  
#*Hidden Markov model speed heuristic and iterative HMM search procedure.
#@L. Steven Johnson,Sean R. Eddy,Elon Portugaly
#t2010
#cBMC Bioinformatics
#index2916274
#% 
#!
  
#*Extracting the abstraction pyramid from complex networks.
#@Chia-Ying Cheng,Yuh-Jyh Hu
#t2010
#cBMC Bioinformatics
#index2916253
#% 
#!
  
#*A comparison of internal validation techniques for multifactor dimensionality reduction.
#@Stacey J. Winham,Andrew J. Slater,Alison A. Motsinger-Reif
#t2010
#cBMC Bioinformatics
#index2916217
#% 
#!
  
#*Class prediction for high-dimensional class-imbalanced data.
#@Rok Blagus,Lara Lusa
#t2010
#cBMC Bioinformatics
#index2916267
#% 
#!
  
#*baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data.
#@Thomas J. Hardcastle,Krystyna A. Kelly
#t2010
#cBMC Bioinformatics
#index2916260
#% 
#!
  
#*Data reduction for spectral clustering to analyze high throughput flow cytometry data.
#@Habil Zare,Parisa Shooshtari,Arvind Gupta,Ryan R. Brinkman
#t2010
#cBMC Bioinformatics
#index2916281
#% 
#!
  
#*Accurate peak list extraction from proteomic mass spectra for identification and profiling studies.
#@Nicola Barbarini,Paolo Magni
#t2010
#cBMC Bioinformatics
#index2916310
#% 
#!
  
#*The Neural/Immune Gene Ontology: clipping the Gene Ontology for neurological and immunological systems.
#@Nophar Geifman,Alon Monsonego,Eitan Rubin
#t2010
#cBMC Bioinformatics
#index2916216
#% 
#!
  
#*Improving performance of mammalian microRNA target prediction.
#@Hui Liu,Dong Yue,Yidong Chen,Shou-Jiang Gao,Yufei Huang
#t2010
#cBMC Bioinformatics
#index2916202
#% 
#!
  
#*Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement.
#@Joel Hedlund,Hans Jörnvall,Bengt Persson
#t2010
#cBMC Bioinformatics
#index2916184
#% 
#!
  
#*Gene Expression Browser: large-scale and cross-experiment microarray data integration, management, search & visualization.
#@Ming Zhang,Yudong Zhang,Li Liu,Lijuan Yu,Shirley Tsang,Jing Tan,Wenhua Yao,Manjit S. Kang,Yongqiang An,Xingming Fan
#t2010
#cBMC Bioinformatics
#index2916143
#% 
#!
  
#*BPDA - A Bayesian peptide detection algorithm for mass spectrometry.
#@Youting Sun,Jianqiu Zhang,Ulisses Braga-Neto,Edward R. Dougherty
#t2010
#cBMC Bioinformatics
#index2916314
#% 
#!
  
#*Sequence-based identification of interface residues by an integrative profile combining hydrophobic and evolutionary information.
#@Peng Chen,Jinyan Li
#t2010
#cBMC Bioinformatics
#index2916328
#% 
#!
  
#*A comparative study of conservation and variation scores.
#@Fredrik Johansson,Hiroyuki Toh
#t2010
#cBMC Bioinformatics
#index2916208
#% 
#!
  
#*Simple and flexible classification of gene expression microarrays via Swirls and Ripples.
#@Stuart G. Baker
#t2010
#cBMC Bioinformatics
#index2916170
#% 
#!
  
#*Predicting changes in protein thermostability brought about by single- or multi-site mutations.
#@Jian Tian,Ningfeng Wu,Xiaoyu Chu,Yunliu Fan
#t2010
#cBMC Bioinformatics
#index2916295
#% 
#!
  
#*Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks.
#@Yong Li,Lili Liu,Xi Bai,Hua Cai,Wei Ji,Dianjing Guo,Yanming Zhu
#t2010
#cBMC Bioinformatics
#index2916194
#% 
#!
  
#*Booly: a new data integration platform.
#@Long H. Do,Francisco F. Esteves,Harvey J. Karten,Ethan Bier
#t2010
#cBMC Bioinformatics
#index2916290
#% 
#!
  
#*An algorithm for automated closure during assembly.
#@Sergey Koren,Jason R. Miller,Brian Walenz,Granger G. Sutton
#t2010
#cBMC Bioinformatics
#index2916156
#% 
#!
  
#*Automatic, context-specific generation of Gene Ontology slims.
#@Melissa J. Davis,Muhammad Shoaib B. Sehgal,Mark A. Ragan
#t2010
#cBMC Bioinformatics
#index2916165
#% 
#!
  
#*DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules.
#@Bruno M. Tesson,Rainer Breitling,Ritsert C. Jansen
#t2010
#cBMC Bioinformatics
#index2916268
#% 
#!
  
#*Investigating the validity of current network analysis on static conglomerate networks by protein network stratification.
#@Minlu Zhang,Long J. Lu
#t2010
#cBMC Bioinformatics
#index2916254
#% 
#!
  
#*Quantized correlation coefficient for measuring reproducibility of ChIP-chip data.
#@Shouyong Peng,Mitzi I. Kuroda,Peter J. Park
#t2010
#cBMC Bioinformatics
#index2916166
#% 
#!
  
#*Nonparametric identification of regulatory interactions from spatial and temporal gene expression data.
#@Anil Aswani,Soile V. E. Keränen,James Brown,Charless C. Fowlkes,David W. Knowles,Mark D. Biggin,Peter Bickel,Claire J. Tomlin
#t2010
#cBMC Bioinformatics
#index2916159
#% 
#!
  
#*MetNetGE: interactive views of biological networks and ontologies.
#@Ming Jia,Suh-Yeon Choi,Dirk Reiners,Eve Syrkin Wurtele,Julie A. Dickerson
#t2010
#cBMC Bioinformatics
#index2916218
#% 
#!
  
#*On the Choice and Number of Microarrays for Transcriptional Regulatory Network Inference.
#@Elissa J. Cosgrove,Timothy S. Gardner,Eric D. Kolaczyk
#t2010
#cBMC Bioinformatics
#index2916232
#% 
#!
  
#*Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage.
#@Majid Masso,Iosif I. Vaisman
#t2010
#cBMC Bioinformatics
#index2916140
#% 
#!
  
#*Asymmetric microarray data produces gene lists highly predictive of research literature on multiple cancer types.
#@Noor B. Dawany,Aydin Tozeren
#t2010
#cBMC Bioinformatics
#index2916333
#% 
#!
  
#*Assessment and optimisation of normalisation methods for dual-colour antibody microarrays.
#@Martin Sill,Christoph Schroder,Jörg D. Hoheisel,Axel Benner,Manuela Zucknick
#t2010
#cBMC Bioinformatics
#index2916319
#% 
#!
  
#*HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data.
#@Zhaohui S. Qin,Jianjun Yu,Jincheng Shen,Christopher A. Maher,Ming Hu,Shanker Kalyana-Sundaram,Jindan Yu,Arul M. Chinnaiyan
#t2010
#cBMC Bioinformatics
#index2916151
#% 
#!
  
#*Predicting enzyme targets for cancer drugs by profiling human Metabolic reactions in NCI-60 cell lines.
#@Limin Li,Xiaobo Zhou,Wai-Ki Ching,Ping Wang
#t2010
#cBMC Bioinformatics
#index2916336
#% 
#!
  
#*R-Gada: a fast and flexible pipeline for copy number analysis in association studies.
#@Roger Pique-Regi,Alejandro Cáceres,Juan R. González
#t2010
#cBMC Bioinformatics
#index2916298
#% 
#!
  
#*Inferring gene regression networks with model trees.
#@Isabel A. Nepomuceno-Chamorro,Jesús S. Aguilar-Ruiz,José C. Riquelme
#t2010
#cBMC Bioinformatics
#index2916306
#% 
#!
  
#*Non-coding RNA detection methods combined to improve usability, reproducibility and precision.
#@Peter Raasch,Ulf Schmitz,Nadja Patenge,Julio Vera,Bernd Kreikemeyer,Olaf Wolkenhauer
#t2010
#cBMC Bioinformatics
#index2916214
#% 
#!
  
#*Simultaneous prediction of transcription factor binding sites in a group of prokaryotic genomes.
#@Shaoqiang Zhang,Shan Li,Phuc T. Pham,Zhengchang Su
#t2010
#cBMC Bioinformatics
#index2916315
#% 
#!
  
#*Visualisation tool for peptide fractionation data in proteomics: application to OFFGEL isoelectric focussing.
#@David-Olivier D. Azulay,Hendrik Neubert,Mireia Fernández Ocaña
#t2010
#cBMC Bioinformatics
#index2916245
#% 
#!
  
#*Sample size and statistical power considerations in high-dimensionality data settings: a comparative study of classification algorithms.
#@Yu Guo,Armin Graber,Robert N. McBurney,Raji Balasubramanian
#t2010
#cBMC Bioinformatics
#index2916305
#% 
#!
  
#*Algorithm-driven Artifacts in median polish summarization of Microarray data.
#@Federico M. Giorgi,Anthony M. Bolger,Marc Lohse,Björn Usadel
#t2010
#cBMC Bioinformatics
#index2916207
#% 
#!
  
#*Genomic selection and complex trait prediction using a fast EM algorithm applied to genome-wide markers.
#@Ross K. Shepherd,Theo H. E. Meuwissen,John A. Woolliams
#t2010
#cBMC Bioinformatics
#index2916262
#% 
#!
  
#*pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree.
#@Frederick A. Matsen III,Robin B. Kodner,E. Virginia Armbrust
#t2010
#cBMC Bioinformatics
#index2916269
#% 
#!
  
#*MetAssimulo: Simulation of Realistic NMR Metabolic Profiles.
#@Harriet J. Muncey,Rebecca Jones,Maria De Iorio,Timothy M. D. Ebbels
#t2010
#cBMC Bioinformatics
#index2916167
#% 
#!
  
#*Analysis of lifestyle and metabolic predictors of visceral obesity with Bayesian Networks.
#@Alex Aussem,André Tchernof,Sergio Rodrigues de Morais,Sophie Rome
#t2010
#cBMC Bioinformatics
#index2916226
#% 
#!
  
#*Parallel multiplicity and error discovery rate (EDR) in microarray experiments.
#@Wayne Wenzhong Xu,Clay J. Carter
#t2010
#cBMC Bioinformatics
#index2916259
#% 
#!
  
#*Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images.
#@Jo A. Helmuth,Grégory Paul,Ivo F. Sbalzarini
#t2010
#cBMC Bioinformatics
#index2916186
#% 
#!
  
#*FACT: Functional annotation transfer between proteins with similar feature architectures.
#@Tina Koestler,Arndt von Haeseler,Ingo Ebersberger
#t2010
#cBMC Bioinformatics
#index2916176
#% 
#!
  
#*Thermodynamically consistent Bayesian analysis of closed biochemical reaction systems.
#@W. Garrett Jenkinson,Xiaogang Zhong,John Goutsias
#t2010
#cBMC Bioinformatics
#index2916325
#% 
#!
  
#*An adaptive optimal ensemble classifier via bagging and rank aggregation with applications to high dimensional data.
#@Susmita Datta,Vasyl Pihur,Somnath Datta
#t2010
#cBMC Bioinformatics
#index2916287
#% 
#!
  
#*SeqAnt: A web service to rapidly identify and annotate DNA sequence variations.
#@Amol Carl Shetty,Prashanth Athri,Kajari Mondal,Vanessa L. Horner,Karyn Meltz Steinberg,Viren Patel,Tamara Caspary,David J. Cutler,Michael E. Zwick
#t2010
#cBMC Bioinformatics
#index2916318
#% 
#!
  
#*Misty Mountain clustering: application to fast unsupervised flow cytometry gating.
#@István P. Sugár,Stuart C. Sealfon
#t2010
#cBMC Bioinformatics
#index2916169
#% 
#!
  
#*Correction: PathEx: A novel multi factors based datasets selector web tool.
#@Eric Bareke,Michael Pierre,Anthoula Gaigneaux,Bertrand De Meulder,Sophie Depiereux,Fabrice Berger,Naji Habra,Eric Depiereux
#t2010
#cBMC Bioinformatics
#index2916141
#% 
#!
  
#*The LabelHash Algorithm for Substructure Matching.
#@Mark Moll,Drew H. Bryant,Lydia E. Kavraki
#t2010
#cBMC Bioinformatics
#index2916288
#% 
#!
  
#*The Text-mining based PubChem Bioassay neighboring analysis.
#@Lianyi Han,Tugba O. Suzek,Yanli Wang,Steve H. Bryant
#t2010
#cBMC Bioinformatics
#index2916293
#% 
#!
  
#*TF-finder: A software package for identifying transcription factors involved in biological processes using microarray data and existing knowledge base.
#@Xiaoqi Cui,Tong Wang,Huann-Sheng Chen,Victor Busov,Hairong Wei
#t2010
#cBMC Bioinformatics
#index2916244
#% 
#!
  
#*Context dependent substitution biases vary within the human genome.
#@P. Andrew Nevarez,Christopher M. DeBoever,Benjamin J. Freeland,Marissa A. Quitt,Eliot C. Bush
#t2010
#cBMC Bioinformatics
#index2916317
#% 
#!
  
#*PathEx: a novel multi factors based datasets selector web tool.
#@Eric Bareke,Michael Pierre,Anthoula Gaigneaux,Bertrand De Meulder,Sophie Depiereux,Naji Habra,Eric Depiereux
#t2010
#cBMC Bioinformatics
#index2916316
#% 
#!
  
#*GPFrontend and GPGraphics: graphical analysis tools for genetic association studies.
#@Steffen Uebe,Francesca Pasutto,Mandy Krumbiegel,Denny Schanze,Arif B. Ekici,André Reis
#t2010
#cBMC Bioinformatics
#index2916196
#% 
#!
  
#*A multifactorial analysis of obesity as CVD risk factor: Use of neural network based methods in a nutrigenetics context.
#@Ioannis K. Valavanis,Stavroula G. Mougiakakou,Keith A. Grimaldi,Konstantina S. Nikita
#t2010
#cBMC Bioinformatics
#index2916158
#% 
#!
  
#*Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.
#@Petr Novák,Pavel Neumann,Jirí Macas
#t2010
#cBMC Bioinformatics
#index2916187
#% 
#!
  
#*Compartmentalization of the Edinburgh Human Metabolic Network.
#@Tong Hao,Hongwu Ma,Xue-Ming Zhao,Igor Goryanin
#t2010
#cBMC Bioinformatics
#index2916286
#% 
#!
  
#*Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets.
#@Aydin Albayrak,Hasan H. Otu,Ugur O. Sezerman
#t2010
#cBMC Bioinformatics
#index2916280
#% 
#!
  
#*An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs.
#@Fernando Garcia-Alcalde,Armando Blanco,Adrian J. Shepherd
#t2010
#cBMC Bioinformatics
#index2916297
#% 
#!
  
#*A method for automatically extracting infectious disease-related primers and probes from the literature.
#@Miguel García-Remesal,Alejandro Cuevas,Victoria López-Alonso,Guillermo López-Campos,Guillermo de la Calle,Diana de la Iglesia,David Pérez-Rey,José Crespo,Fernando Martín-Sánchez,Victor Maojo
#t2010
#cBMC Bioinformatics
#index2916335
#% 
#!
  
#*ModuleOrganizer: detecting modules in families of transposable elements.
#@Sébastien Tempel,Christine Rousseau,Fariza Tahi,Jacques Nicolas
#t2010
#cBMC Bioinformatics
#index2916189
#% 
#!
  
#*Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks.
#@Martin T. Swain,Johannes J. Mandel,Werner Dubitzky
#t2010
#cBMC Bioinformatics
#index2916252
#% 
#!
  
#*Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape.
#@Kristof Theys,Koen Deforche,Gertjan Beheydt,Yves Moreau,Kristel Van Laethem,Philippe Lemey,Ricardo Camacho,Soo-Yon Rhee,Robert W. Shafer,Eric Van Wijngaerden,Anne-Mieke Vandamme
#t2010
#cBMC Bioinformatics
#index2916150
#% 
#!
  
#*Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development.
#@Jennifer I. Deegan nee Clark,Emily C. Dimmer,Christopher J. Mungall
#t2010
#cBMC Bioinformatics
#index2916223
#% 
#!
  
#*FITBAR: a web tool for the robust prediction of prokaryotic regulons.
#@Jacques Oberto
#t2010
#cBMC Bioinformatics
#index2916300
#% 
#!
  
#*PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci.
#@Mali Salmon-Divon,Heidi Dvinge,Kairi Tammoja,Paul Bertone
#t2010
#cBMC Bioinformatics
#index2916243
#% 
#!
  
#*TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs.
#@Ming Lu,Bing Shi,Juan Wang,Qun Cao,Qinghua Cui
#t2010
#cBMC Bioinformatics
#index2916215
#% 
#!
  
#*CCRaVAT and QuTie - enabling analysis of rare variants in large-scale case control and quantitative trait association studies.
#@Robert Lawrence,Aaron G. Day-Williams,Katherine S. Elliott,Andrew P. Morris,Eleftheria Zeggini
#t2010
#cBMC Bioinformatics
#index2916270
#% 
#!
  
#*An exploratory data analysis method to reveal modular latent structures in high-throughput data.
#@Tianwei Yu
#t2010
#cBMC Bioinformatics
#index2916326
#% 
#!
  
#*Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology.
#@Kang Ning,Hoong Kee Ng,Sriganesh Srihari,Hon Wai Leong,Alexey I. Nesvizhskii
#t2010
#cBMC Bioinformatics
#index2916168
#% 
#!
  
#*An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology.
#@Shobhit Jain,Gary D. Bader
#t2010
#cBMC Bioinformatics
#index2916225
#% 
#!
  
#*Sigma-2: Multiple sequence alignment of non-coding DNA via an evolutionary model.
#@Gayathri Jayaraman,Rahul Siddharthan
#t2010
#cBMC Bioinformatics
#index2916177
#% 
#!
  
#*Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces.
#@Hanka Venselaar,Tim A. H. te Beek,Remko K. P. Kuipers,Maarten L. Hekkelman,Gert Vriend
#t2010
#cBMC Bioinformatics
#index2916279
#% 
#!
  
#*SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments.
#@David B. Burdick,Christopher C. Cavnor,Jeremy Handcock,Sarah A. Killcoyne,Jake Lin,Bruz Marzolf,Stephen A. Ramsey,Hector Rovira,Ryan Bressler,Ilya Shmulevich,John Boyle
#t2010
#cBMC Bioinformatics
#index2916307
#% 
#!
  
#*solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database.
#@Isaak Y. Tecle,Naama Menda,Robert M. Buels,Esther van der Knaap,Lukas A. Mueller
#t2010
#cBMC Bioinformatics
#index2916206
#% 
#!
  
#*A bi-ordering approach to linking gene expression with clinical annotations in gastric cancer.
#@Fan Shi,Christopher Leckie,Geoff MacIntyre,Izhak Haviv,Alex Boussioutas,Adam Kowalczyk
#t2010
#cBMC Bioinformatics
#index2916261
#% 
#!
  
#*Functional Analysis: Evaluation of Response Intensities - Tailoring ANOVA for Lists of Expression Subsets.
#@Fabrice Berger,Bertrand De Meulder,Anthoula Gaigneaux,Sophie Depiereux,Eric Bareke,Michael Pierre,Benoît De Hertogh,Mauro Delorenzi,Eric Depiereux
#t2010
#cBMC Bioinformatics
#index2916233
#% 
#!
  
#*: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment.
#@Taeho Kim,Hyun Joo
#t2010
#cBMC Bioinformatics
#index2916299
#% 
#!
  
#*Coherent pipeline for biomarker discovery using mass spectrometry and bioinformatics.
#@Ali Al-Shahib,Raju Misra,Nadia Ahmod,Min Fang,Haroun Shah,Saheer Gharbia
#t2010
#cBMC Bioinformatics
#index2916197
#% 
#!
  
#*caGrid Workflow Toolkit: A Taverna based workflow tool for cancer Grid.
#@Wei Tan,Ravi K. Madduri,Aleksandra Nenadic,Stian Soiland-Reyes,Dinanath Sulakhe,Ian T. Foster,Carole A. Goble
#t2010
#cBMC Bioinformatics
#index2916160
#% 
#!
  
#*Use of historic metabolic biotransformation data as a means of anticipating metabolic sites using MetaPrint2D and Bioclipse.
#@Lars Carlsson,Ola Spjuth,Samuel Adams,Robert C. Glen,Scott Boyer
#t2010
#cBMC Bioinformatics
#index2916251
#% 
#!
  
#*KID - an algorithm for fast and efficient text mining used to automatically generate a database containing kinetic information of enzymes.
#@Stephanie Heinen,Bernhard Thielen,Dietmar Schomburg
#t2010
#cBMC Bioinformatics
#index2916153
#% 
#!
  
#*Trimming of mammalian transcriptional networks using network component analysis.
#@Linh M. Tran,Daniel R. Hyduke,James C. Liao
#t2010
#cBMC Bioinformatics
#index2916138
#% 
#!
  
#*Statistical analysis and molecular dynamics simulations of ambivalent -helices.
#@Nicholus Bhattacharjee,Parbati Biswas
#t2010
#cBMC Bioinformatics
#index2916285
#% 
#!
  
#*Protein network prediction and topological analysis in as a tool for drug target selection.
#@Andrés F. Flórez,Daeui Park,Jong Bhak,Byoung-Chul Kim,Allan Kuchinsky,John H. Morris,Jairo Espinosa,Carlos Muskus
#t2010
#cBMC Bioinformatics
#index2916174
#% 
#!
  
#*rSW-seq: Algorithm for detection of copy number alterations in deep sequencing data.
#@Tae-Min Kim,Lovelace J. Luquette,Ruibin Xi,Peter J. Park
#t2010
#cBMC Bioinformatics
#index2916308
#% 
#!
  
#*Integration and visualization of systems biology data in context of the genome.
#@J. Christopher Bare,Tie Koide,David J. Reiss,Dan Tenenbaum,Nitin S. Baliga
#t2010
#cBMC Bioinformatics
#index2916294
#% 
#!
  
#*MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure.
#@Sriganesh Srihari,Kang Ning,Hon Wai Leong
#t2010
#cBMC Bioinformatics
#index2916242
#% 
#!
  
#*Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions.
#@Chad Laing,Cody Buchanan,Eduardo N. Taboada,Yongxiang Zhang,Andrew Kropinski,Andre Villegas,James E. Thomas,Victor P. J. Gannon
#t2010
#cBMC Bioinformatics
#index2916271
#% 
#!
  
#*An integrated analysis of molecular aberrations in NCI-60 cell lines.
#@Chen-Hsiang Yeang
#t2010
#cBMC Bioinformatics
#index2916139
#% 
#!
  
#**omeSOM: a software for clustering and visualization of transcriptional and metabolite data mined from interspecific crosses of crop plants.
#@Diego H. Milone,Georgina Stegmayer,Laura Kamenetzky,Mariana Lopez,Je Min Lee,James J. Giovannoni,Fernando Carrari
#t2010
#cBMC Bioinformatics
#index2916248
#% 
#!
  
#*Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins.
#@Shandar Ahmad,Yumlembam Hemjit Singh,Yogesh Paudel,Takaharu Mori,Yuji Sugita,Kenji Mizuguchi
#t2010
#cBMC Bioinformatics
#index2916198
#% 
#!
  
#*Predicting phenotypic traits of prokaryotes from protein domain frequencies.
#@Thomas Lingner,Stefanie Mühlhausen,Toni Gabaldón,Cédric Notredame,Peter Meinicke
#t2010
#cBMC Bioinformatics
#index2916191
#% 
#!
  
#*Efficient Bayesian approach for multilocus association mapping including gene-gene interactions.
#@Pekka Marttinen,Jukka Corander
#t2010
#cBMC Bioinformatics
#index2916228
#% 
#!
  
#*A systematic study of genome context methods: calibration, normalization and combination.
#@Luciana Ferrer,Joseph M. Dale,Peter D. Karp
#t2010
#cBMC Bioinformatics
#index2916175
#% 
#!
  
#*VIGOR, an annotation program for small viral genomes.
#@Shiliang Wang,Jaideep P. Sundaram,David Spiro
#t2010
#cBMC Bioinformatics
#index2916212
#% 
#!
  
#*BALL - biochemical algorithms library 1.3.
#@Andreas Hildebrandt,Anna Katharina Dehof,Alexander Rurainski,Andreas Bertsch,Marcel Schumann,Nora C. Toussaint,Andreas Moll,Daniel Stöckel,Stefan Nickels,Sabine C. Mueller,Hans-Peter Lenhof,Oliver Kohlbacher
#t2010
#cBMC Bioinformatics
#index2916257
#% 
#!
  
#*Discover Protein Complexes in Protein-Protein Interaction Networks Using Parametric Local Modularity.
#@Jongkwang Kim,Kai Tan
#t2010
#cBMC Bioinformatics
#index2916234
#% 
#!
  
#*Ranked retrieval of Computational Biology models.
#@Ron Henkel,Lukas Endler,Andre Peters,Nicolas Le Novère,Dagmar Waltemath
#t2010
#cBMC Bioinformatics
#index2916250
#% 
#!
  
#*Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0).
#@Jean-Marie Cornuet,Virgine Ravigné,Arnaud Estoup
#t2010
#cBMC Bioinformatics
#index2916205
#% 
#!
  
#*The effect of prior assumptions over the weights in BayesPI with application to study protein-DNA interactions from ChIP-based high-throughput data.
#@Junbai Wang
#t2010
#cBMC Bioinformatics
#index2916264
#% 
#!
  
#*Clustering metagenomic sequences with interpolated Markov models.
#@David R. Kelley,Steven L. Salzberg
#t2010
#cBMC Bioinformatics
#index2916221
#% 
#!
  
#*Quadratic variance models for adaptively preprocessing SELDI-TOF mass spectrometry data.
#@Vincent A. Emanuele II,Brian M. Gurbaxani
#t2010
#cBMC Bioinformatics
#index2916323
#% 
#!
  
#*Data structures and compression algorithms for high-throughput sequencing technologies.
#@Kenny Daily,Paul Rigor,Scott Christley,Xiaohui Xie,Pierre Baldi
#t2010
#cBMC Bioinformatics
#index2916337
#% 
#!
  
#*EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results.
#@Shide Liang,Dandan Zheng,Daron M. Standley,Bo Yao,Martin Zacharias,Chi Zhang
#t2010
#cBMC Bioinformatics
#index2916278
#% 
#!
  
#*Knowledge-based annotation of small molecule binding sites in proteins.
#@Ratna R. Thangudu,Manoj Tyagi,Benjamin A. Shoemaker,Stephen H. Bryant,Anna R. Panchenko,Thomas Madej
#t2010
#cBMC Bioinformatics
#index2916152
#% 
#!
  
#*VIPR: A probabilistic algorithm for analysis of microbial detection microarrays.
#@Adam F. Allred,Guang Wu,Tuya Wulan,Kael F. Fischer,Michael R. Holbrook,Robert B. Tesh,David Wang
#t2010
#cBMC Bioinformatics
#index2916204
#% 
#!
  
#*GeneBrowser 2: an application to explore and identify common biological traits in a set of genes.
#@Joel Arrais,João Fernandes,João Pereira,José Luís Oliveira
#t2010
#cBMC Bioinformatics
#index2916227
#% 
#!
  
#*Protein structure modelling and evaluation based on a 4-distance description of side-chain interactions.
#@Vladimir Potapov,Mati Cohen,Yuval Inbar,Gideon Schreiber
#t2010
#cBMC Bioinformatics
#index2916240
#% 
#!
  
#*A semi-nonparametric mixture model for selecting functionally consistent proteins.
#@Lianbo Yu,R. W. Doerge
#t2010
#cBMC Bioinformatics
#index2916199
#% 
#!
  
#*Localizing triplet periodicity in DNA and cDNA sequences.
#@Liya Wang,Lincoln D. Stein
#t2010
#cBMC Bioinformatics
#index2916324
#% 
#!
  
#*Predicting success of oligomerized pool engineering (OPEN) for zinc finger target site sequences.
#@Jeffry D. Sander,Deepak Reyon,Morgan L. Maeder,Jonathan E. Foley,Stacey Thibodeau-Beganny,Xiaohong Li,Maureen R. Regan,Elizabeth Dahlborg,Mathew J. Goodwin,Fengli Fu,Daniel F. Voytas,J. Keith Joung,Drena Dobbs
#t2010
#cBMC Bioinformatics
#index2916241
#% 
#!
  
#*A factorization method for the classification of infrared spectra.
#@Carsten Henneges,Pavel Laskov,Endang Darmawan,Juergen Backhaus,Bernd Kammerer,Andreas Zell
#t2010
#cBMC Bioinformatics
#index2916309
#% 
#!
  
#*eGIFT: Mining Gene Information from the Literature.
#@Catalina O. Tudor,Carl J. Schmidt,K. Vijay-Shanker
#t2010
#cBMC Bioinformatics
#index2916161
#% 
#!
  
#*Flexible network reconstruction from relational databases with Cytoscape and CytoSQL.
#@Kris Laukens,Jens Hollunder,Thanh Hai Dang,Geert De Jaeger,Martin Kuiper,Erwin Witters,Alain Verschoren,Koenraad Van Leemput
#t2010
#cBMC Bioinformatics
#index2916180
#% 
#!
  
#*The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets.
#@Adam J. Carroll,Murray R. Badger,A. Harvey Millar
#t2010
#cBMC Bioinformatics
#index2916235
#% 
#!
  
#*A genetic ensemble approach for gene-gene interaction identification.
#@Pengyi Yang,Joshua W. K. Ho,Albert Y. Zomaya,Bing Bing Zhou
#t2010
#cBMC Bioinformatics
#index2916277
#% 
#!
  
#*Predicting domain-domain interaction based on domain profiles with feature selection and support vector machines.
#@Alvaro J. González,Li Liao
#t2010
#cBMC Bioinformatics
#index2916185
#% 
#!
  
#*: a tool for comparative assessment of genetic heterogeneity in microbial genomes generated by massive short-read sequencing.
#@GongXin Yu
#t2010
#cBMC Bioinformatics
#index2916302
#% 
#!
  
#*A statistical approach to finding overlooked genetic associations.
#@Andrew K. Rider,Geoffrey Siwo,Nitesh V. Chawla,Michael T. Ferdig,Scott J. Emrich
#t2010
#cBMC Bioinformatics
#index2916147
#% 
#!
  
#*Relations as patterns: bridging the gap between OBO and OWL.
#@Robert Hoehndorf,Anika Oellrich,Michel Dumontier,Janet Kelso,Dietrich Rebholz-Schuhmann,Heinrich Herre
#t2010
#cBMC Bioinformatics
#index2916190
#% 
#!
  
#*Proteome scanning to predict PDZ domain interactions using support vector machines.
#@Shirley Hui,Gary D. Bader
#t2010
#cBMC Bioinformatics
#index2916338
#% 
#!
  
#*CIG-DB: the database for human or mouse immunoglobulin and T cell receptor genes available for cancer studies.
#@Yoji Nakamura,Tomoyoshi Komiyama,Motoki Furue,Takashi Gojobori,Yasuto Akiyama
#t2010
#cBMC Bioinformatics
#index2916183
#% 
#!
  
#*Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs.
#@Mara L. Hartsperger,Florian Blöchl,Volker Stümpflen,Fabian J. Theis
#t2010
#cBMC Bioinformatics
#index2916213
#% 
#!
  
#*Next generation tools for genomic data generation, distribution, and visualization.
#@David A. Nix,Tonya L. Di Sera,Brian K. Dalley,Brett A. Milash,Robert M. Cundick,Kevin S. Quinn,Samir J. Courdy
#t2010
#cBMC Bioinformatics
#index2916155
#% 
#!
  
#*Efficiency clustering for low-density microarrays and its application to QPCR.
#@Eric F. Lock,Ryan Ziemiecki,J. S. Marron,Dirk P. Dittmer
#t2010
#cBMC Bioinformatics
#index2916263
#% 
#!
  
#*Dual-functioning transcription factors in the developmental gene network of .
#@Denis C. Bauer,Fabian A. Buske,Timothy L. Bailey
#t2010
#cBMC Bioinformatics
#index2916272
#% 
#!
  
#*Global parameter estimation methods for stochastic biochemical systems.
#@Suresh Kumar Poovathingal,Rudiyanto Gunawan
#t2010
#cBMC Bioinformatics
#index2916144
#% 
#!
  
#*Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: Transcriptional dynamics and regulatory structures.
#@Tung T. Nguyen,Richard R. Almon,Debra C. DuBois,William J. Jusko,Ioannis P. Androulakis
#t2010
#cBMC Bioinformatics
#index2916249
#% 
#!
  
#*Coverage statistics for sequence census methods.
#@Steven N. Evans,Valerie Hower,Lior Pachter
#t2010
#cBMC Bioinformatics
#index2916258
#% 
#!
  
#*MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data.
#@Tomás Pluskal,Sandra Castillo,Alejandro Villar-Briones,Matej Oresic
#t2010
#cBMC Bioinformatics
#index2916291
#% 
#!
  
#*Trees on networks: resolving statistical patterns of phylogenetic similarities among interacting proteins.
#@William P. Kelly,Michael P. H. Stumpf
#t2010
#cBMC Bioinformatics
#index2916322
#% 
#!
  
#*Fast and accurate protein substructure searching with simulated annealing and GPUs.
#@Alex Stivala,Peter J. Stuckey,Anthony Wirth
#t2010
#cBMC Bioinformatics
#index2916329
#% 
#!
  
#*Extended morphological processing: a practical method for automatic spot detection of biological markers from microscopic images.
#@Yoshitaka Kimori,Norio Baba,Nobuhiro Morone
#t2010
#cBMC Bioinformatics
#index2916222
#% 
#!
  
#*A flexible R package for nonnegative matrix factorization.
#@Renaud Gaujoux,Cathal Seoighe
#t2010
#cBMC Bioinformatics
#index2916162
#% 
#!
  
#*Comparison study of microarray meta-analysis methods.
#@Anna Campain,Yee Hwa Yang
#t2010
#cBMC Bioinformatics
#index2916284
#% 
#!
  
#*Bi-directional gene set enrichment and canonical correlation analysis identify key diet-sensitive pathways and biomarkers of metabolic syndrome.
#@Melissa J. Morine,Jolene McMonagle,Sinead Toomey,Clare M. Reynolds,Aidan P. Moloney,Isobel C. Gormley,Peadar Ó Gaora,Helen M. Roche
#t2010
#cBMC Bioinformatics
#index2916173
#% 
#!
  
#*Pathway- and network-based analysis of GWAS data revealed susceptibility gene sets to schizophrenia.
#@Peilin Jia,Zhongming Zhao
#t2010
#cBMC Bioinformatics
#index2964403
#% 
#!
  
#*Statistical learning techniques applied to epidemiology: a simulated case-control comparison study with logistic regression.
#@John J. Heine,Walker H. Land Jr.,Kathleen M. Egan
#t2011
#cBMC Bioinformatics
#index2964493
#% 
#!
  
#*Dr. PIAS: an integrative system for assessing the druggability of protein-protein interactions.
#@Nobuyoshi Sugaya,Toshio Furuya
#t2011
#cBMC Bioinformatics
#index2964502
#% 
#!
  
#*GraphCruch 2: Software tool for network modeling, alignment and clustering.
#@Oleksii Kuchaiev,Aleksandar Stevanovic,Wayne Hayes,Natasa Przulj
#t2011
#cBMC Bioinformatics
#index2964489
#% 
#!
  
#*PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling.
#@Gürkan Bebek,Vishal Patel,Mark R. Chance
#t2010
#cBMC Bioinformatics
#index2964466
#% 
#!
  
#*Understanding molecular recognition and epitope prediction from Information Theoretic approach.
#@Indranil Mitra,Yan Cui
#t2010
#cBMC Bioinformatics
#index2964390
#% 
#!
  
#*Probabilistic Principal Component Analysis for Metabolomic Data.
#@Gift Nyamundanda,Lorraine Brennan,Isobel Claire Gormley
#t2010
#cBMC Bioinformatics
#index2964381
#% 
#!
  
#*CNV-WebStore: Online CNV Analysis, Storage and Interpretation.
#@Geert Vandeweyer,Edwin Reyniers,Wim Wuyts,Liesbeth Rooms,R. Frank Kooy
#t2011
#cBMC Bioinformatics
#index2964427
#% 
#!
  
#*A quality metric for homology modeling: the H-factor.
#@Eric di Luccio,Patrice Koehl
#t2011
#cBMC Bioinformatics
#index2964509
#% 
#!
  
#*Experimenting with database segmentation size vs time performance for mpiBLAST on an IBM HS21 blade cluster.
#@Daniel Harris,Jerzy W. Jaromczyk,Christopher L. Schardl
#t2010
#cBMC Bioinformatics
#index2964418
#% 
#!
  
#*Comparative study of unsupervised dimension reduction techniques for the visualization of microarray gene expression data.
#@Christoph Bartenhagen,Hans-Ulrich Klein,Christian Ruckert,Xiaoyi Jiang,Martin Dugas
#t2010
#cBMC Bioinformatics
#index2964380
#% 
#!
  
#*Validation and characterization of DNA microarray gene expression data distribution and associated moments.
#@Reuben Thomas,Luis de la Torre,Xiaoqing Chang,Sanjay Mehrotra
#t2010
#cBMC Bioinformatics
#index2964382
#% 
#!
  
#*Association of genomewide newborn DNA methylation patterns with maternal and newborn characteristics.
#@Ronald M. Adkins,Julia Krushkal,Steven Zeisel,Chandrika Piyathilake,Fran Tylavsky,Grant Somes
#t2010
#cBMC Bioinformatics
#index2964423
#% 
#!
  
#*Serendipitous discoveries in microarray analysis.
#@Sally R. Ellingson,Charles A. Phillips,Randy Glenn,Douglas Swanson,Thomas Ha,Daniel Goldowitz,Michael A. Langston
#t2010
#cBMC Bioinformatics
#index2964416
#% 
#!
  
#*Development of tools for the automated analysis of spectra generated by tandem mass spectrometry.
#@Sally Ellingson,Joe Hughes,Dylan Storey,Rick Weber,Nathan Verberkmoes
#t2010
#cBMC Bioinformatics
#index2964389
#% 
#!
  
#*BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation.
#@Constantin Bannert,A. Welfle,C. aus dem Spring,Dietmar Schomburg
#t2010
#cBMC Bioinformatics
#index2964453
#% 
#!
  
#*A genetic algorithm-Bayesian network approach for the analysis of metabolomics and spectroscopic data: application to the rapid detection of Bacillus spores and identification of Bacillus species.
#@Elon Correa,Royston Goodacre
#t2011
#cBMC Bioinformatics
#index2964494
#% 
#!
  
#*RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis.
#@Barry Zeeberg,Hongfang Liu,Ari B. Kahn,Martin Ehler,Vinodh N. Rajapakse,Robert F. Bonner,Jacob D. Brown,Brian P. Brooks,Vladimir L. Larionov,William C. Reinhold,John N. Weinstein,Yves Pommier
#t2011
#cBMC Bioinformatics
#index2964501
#% 
#!
  
#*iGTP: A software package for large-scale gene tree parsimony analysis.
#@Ruchi Chaudhary,Mukul S. Bansal,André Wehe,David Fernández-Baca,Oliver Eulenstein
#t2010
#cBMC Bioinformatics
#index2964379
#% 
#!
  
#*Shape-based peak identification for ChIP-Seq.
#@Valerie Hower,Steven N. Evans,Lior Pachter
#t2011
#cBMC Bioinformatics
#index2964479
#% 
#!
  
#*Pleiotropy of tumor necrosis factor-alpha in C2C12 myotubes: studies on genes, networks and pathways involved in TNF-alpha induced skeletal muscle atrophy.
#@Shephali Bhatnagar,Siva K. Panguluri,Robert F. Lundy,Ashok Kumar
#t2010
#cBMC Bioinformatics
#index2964404
#% 
#!
  
#*Empirical Bayes Analysis of Sequencing-based Transcriptional Profiling without Replicates.
#@Zhijin Wu,Bethany D. Jenkins,Tatiana A. Rynearson,Sonya T. Dyhrman,Mak A. Saito,Melissa Mercier,LeAnn P. Whitney
#t2010
#cBMC Bioinformatics
#index2964374
#% 
#!
  
#*Bioinformatic analysis of gene regulation in the metal-reducing bacterial family Geobacteraceae.
#@Julia Krushkal,Ronald M. Adkins,Yanhua Qu,Jeanette Peeples,Sreedhar Sontineni,Ching Leang,Peter Brown,Nelson D. Young,Toshiyuki Ueki,Katy Juarez,Derek R. Lovley
#t2010
#cBMC Bioinformatics
#index2964426
#% 
#!
  
#*Comparative functional genomic study of substrate specificity evolution of the SABATH family of methyltransferases in plants.
#@Nan Zhao,Jean-Luc Ferrer,Xiaofeng Zhuang,Feng Chen
#t2010
#cBMC Bioinformatics
#index2964401
#% 
#!
  
#*Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing.
#@Mattia C. F. Prosperi,Luciano Prosperi,Alessandro Bruselles,Isabella Abbate,Gabriella Rozera,Donatella Vincenti,Maria Carmela Solmone,Maria Rosaria Capobianchi,Giovanni Ulivi
#t2011
#cBMC Bioinformatics
#index2964415
#% 
#!
  
#*Sampling the conformation of protein surface residues for flexible protein docking.
#@Patricia Francis-Lyon,Shengyin Gu,Joel Hass,Nina Amenta,Patrice Koehl
#t2010
#cBMC Bioinformatics
#index2964378
#% 
#!
  
#*Systematic integration of experimental data and models in systems biology.
#@Peter Li,Joseph O. Dada,Daniel Jameson,Irena Spasic,Neil Swainston,Kathleen Carroll,Warwick B. Dunn,Farid Khan,Naglis Malys,Hanan L. Messiha,Evangelos Simeonidis,Dieter Weichart,Catherine Winder,Jill Wishart,David S. Broomhead,Carole A. Goble,Simon J. Gaskell,Douglas B. Kell,Hans V. Westerhoff,Pedro Mendes,Norman W. Paton
#t2010
#cBMC Bioinformatics
#index2964437
#% 
#!
  
#*DeltaProt: a software toolbox for comparative genomics.
#@Steinar Thorvaldsen,Tor Flå,Nils Willassen
#t2010
#cBMC Bioinformatics
#index2964369
#% 
#!
  
#*A genome alignment algorithm based on compression.
#@Minh Duc Cao,Trevor I. Dix,Lloyd Allison
#t2010
#cBMC Bioinformatics
#index2964454
#% 
#!
  
#*Flexible taxonomic assignment of ambiguous sequencing reads.
#@José Carlos Clemente,Jesper Jansson,Gabriel Valiente
#t2011
#cBMC Bioinformatics
#index2964465
#% 
#!
  
#*Kernel based methods for accelerated failure time model with ultra-high dimensional data.
#@Zhenqiu Liu,Dechang Chen,Ming Tan,Feng Jiang,Ronald B. Gartenhaus
#t2010
#cBMC Bioinformatics
#index2964444
#% 
#!
  
#*Systematic error detection in experimental high-throughput screening.
#@Plamen Dragiev,Robert Nadon,Vladimir Makarenkov
#t2011
#cBMC Bioinformatics
#index2964490
#% 
#!
  
#*Enabling proteomics-based identification of human cancer variations.
#@Jing Li,Zeqiang Ma,Robbert J. C. Slebos,David L. Tabb,Daniel C. Liebler,Bing Zhang
#t2010
#cBMC Bioinformatics
#index2964397
#% 
#!
  
#*Integrating neighbor clustering, coexpression clustering and subsystems analysis to define dynamic changes in regulatory networks associated with group A streptococcal sociomicrobiology and niche adaptation.
#@Ramy K. Aziz,Bruce J. Aronow,William L. Taylor,Sarah Rowe,Rita Kansal,Mark J. Walker,Malak Kotb
#t2010
#cBMC Bioinformatics
#index2964406
#% 
#!
  
#*The complexity of gene expression dynamics revealed by permutation entropy.
#@Xiaoliang Sun,Yong Zou,Victoria J. Nikiforova,Jürgen Kurths,Dirk Walther
#t2010
#cBMC Bioinformatics
#index2964443
#% 
#!
  
#*Analysis on the reconstruction accuracy of the Fitch method for inferring ancestral states.
#@Jialiang Yang,Jun Li,Liuhuan Dong,Stefan Grünewald
#t2011
#cBMC Bioinformatics
#index2964430
#% 
#!
  
#*Estimating developmental states of tumors and normal tissues using a linear time-ordered model.
#@Bo Zhang,Beibei Chen,Tao Wu,Zhenyu Xuan,Xiaopeng Zhu,Runsheng Chen
#t2011
#cBMC Bioinformatics
#index2964510
#% 
#!
  
#*Multivariate analysis of microarray data: differential expression and differential connection.
#@Harri T. Kiiveri
#t2011
#cBMC Bioinformatics
#index2964495
#% 
#!
  
#*easyDAS: Automatic creation of DAS servers.
#@Bernat Gel,Andrew M. Jenkinson,Rafael C. Jimenez,Xavier Messeguer Peypoch,Henning Hermjakob
#t2011
#cBMC Bioinformatics
#index2964480
#% 
#!
  
#*SIDEKICK: Genomic data driven analysis and decision-making framework.
#@Mark Doderer,Kihoon Yoon,Kay A. Robbins
#t2010
#cBMC Bioinformatics
#index2964473
#% 
#!
  
#*A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D.
#@Anthony Santella,Zhuo Du,Sonja Nowotschin,Anna-Katerina Hadjantonakis,Zhirong Bao
#t2010
#cBMC Bioinformatics
#index2964459
#% 
#!
  
#*Identifying potential drugs that induce QT prolongation using electronic medical records.
#@Mei Liu,Joshua C. Denny,Subramani Mani,Yukun Chen,Yong Hu,Hua Xu
#t2010
#cBMC Bioinformatics
#index2964405
#% 
#!
  
#*ChIPseqR: Analysis of ChIP-seq Experiments.
#@Peter Humburg,Chris A. Helliwell,David Bulger,Glenn Stone
#t2011
#cBMC Bioinformatics
#index2964504
#% 
#!
  
#*Improvements to previous algorithms to predict gene structure and isoform concentrations using Affymetrix Exon arrays.
#@Miguel A. Anton,Ander Aramburu,Angel Rubio
#t2010
#cBMC Bioinformatics
#index2964372
#% 
#!
  
#*A hierarchical Bayesian network approach for linkage disequilibrium modeling and data-dimensionality reduction prior to genome-wide association studies.
#@Raphael Mourad,Christine Sinoquet,Philippe Leray
#t2011
#cBMC Bioinformatics
#index2964468
#% 
#!
  
#*A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences.
#@David J. Russell,Samuel F. Way,Andrew K. Benson,Khalid Sayood
#t2010
#cBMC Bioinformatics
#index2964450
#% 
#!
  
#*Extending pathways and processes using molecular interaction networks to analyse cancer genome data.
#@Enrico Glaab,Anaïs Baudot,Natalio Krasnogor,Alfonso Valencia
#t2010
#cBMC Bioinformatics
#index2964455
#% 
#!
  
#*Statistical analysis of multiple significance test methods for differential proteomics.
#@Bing Wang,Fahim Mohammad,Jun Zhang,Xinmin Yin,Eric C. Rouchka,Xiang Zhang
#t2010
#cBMC Bioinformatics
#index2964387
#% 
#!
  
#*Integrating experimental and computational approaches for the proteogenomic characterizations of microbial communities.
#@Robert L. Hettich,Alison L. Russell,Nathan Verberkmoes,Manesh Shah,Claire Fraser-Liggett,Janet K. Jansson
#t2010
#cBMC Bioinformatics
#index2964421
#% 
#!
  
#*Application of Wavelet Packet Transform to detect genetic polymorphisms by the analysis of inter-Alu PCR patterns.
#@Maurizio Cardelli,Matteo Nicoli,Armando Bazzani,Claudio Franceschi
#t2010
#cBMC Bioinformatics
#index2964439
#% 
#!
  
#*Hierarchical graphs for rule-based modeling of biochemical systems.
#@Nathan W. Lemons,Bin Hu,William S. Hlavacek
#t2011
#cBMC Bioinformatics
#index2964496
#% 
#!
  
#*Predicting functionally important SNP classes based on negative selection.
#@Mark A. Levenstien,Robert J. Klein
#t2011
#cBMC Bioinformatics
#index2964486
#% 
#!
  
#*DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning.
#@Jesse Eickholt,Xin Deng,Jianlin Cheng
#t2011
#cBMC Bioinformatics
#index2964503
#% 
#!
  
#*Prediction of RNA secondary structure by maximizing pseudo-expected accuracy.
#@Michiaki Hamada,Kengo Sato,Kiyoshi Asai
#t2010
#cBMC Bioinformatics
#index2964456
#% 
#!
  
#*N-gram analysis of 970 microbial organisms reveals presence of biological language models.
#@Hatice U. Osmanbeyoglu,Madhavi Ganapathiraju
#t2011
#cBMC Bioinformatics
#index2964428
#% 
#!
  
#*Robust joint analysis allowing for model uncertainty in two-stage genetic association studies.
#@Dongdong Pan,Qizhai Li,Ningning Jiang,Aiyi Liu,Kai F. Yu
#t2011
#cBMC Bioinformatics
#index2964477
#% 
#!
  
#*Growth hormone induces proliferation in the zebrafish inner ear.
#@Michael E. Smith,Huifang Sun,Julie B. Schuck,Shunsuke Moriyama
#t2010
#cBMC Bioinformatics
#index2964388
#% 
#!
  
#*In silico analysis of a family of extracellular polysaccharide deacetylases involved in virulence of pathogenic gram-positive cocci.
#@Ramy Karam Aziz
#t2010
#cBMC Bioinformatics
#index2964422
#% 
#!
  
#*PICS-Ord: Unlimited Coding of Ambiguous Regions by Pairwise Identity and Cost Scores Ordination.
#@Robert K. Luecking,Brendan P. Hodkinson,Alexandros Stamatakis,Reed A. Cartwright
#t2011
#cBMC Bioinformatics
#index2964449
#% 
#!
  
#*Graph algorithms for machine learning: a case-control study based on prostate cancer populations and high throughput transcriptomic data.
#@Gary L. Rogers,Pablo Moscato,Michael A. Langston
#t2010
#cBMC Bioinformatics
#index2964424
#% 
#!
  
#*Revision history aware repositories of computational models of biological systems.
#@Andrew K. Miller,Tommy Yu,Randall Britten,Mike T. Cooling,James R. Lawson,Dougal Cowan,Alan Garny,Matt D. B. Halstead,Peter J. Hunter,David P. Nickerson,Geoff Nunns,Sarala M. Wimalaratne,Poul M. F. Nielsen
#t2011
#cBMC Bioinformatics
#index2964478
#% 
#!
  
#*New insights into protein-protein interaction data lead to increased estimates of the S. cerevisiae interactome size.
#@Laure Sambourg,Nicolas Thierry-Mieg
#t2010
#cBMC Bioinformatics
#index2964442
#% 
#!
  
#*Predicting disease-associated substitution of a single amino acid by analyzing residue interactions.
#@Yizhou Li,Zhining Wen,Jiamin Xiao,Hui Yin,Lezheng Yu,Li Yang,Menglong Li
#t2011
#cBMC Bioinformatics
#index2964467
#% 
#!
  
#*A novel approach to the clustering of microarray data via nonparametric density estimation.
#@Riccardo De Bin,Davide Risso
#t2011
#cBMC Bioinformatics
#index2964508
#% 
#!
  
#*Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation.
#@Andreas Kowarsch,Florian Blöchl,Sebastian Bohl,Maria Saile,Norbert Gretz,Ursula Klingmüller,Fabian J. Theis
#t2010
#cBMC Bioinformatics
#index2964460
#% 
#!
  
#*BIGSdb: Scalable analysis of bacterial genome variation at the population level.
#@Keith A. Jolley,Martin C. J. Maiden
#t2010
#cBMC Bioinformatics
#index2964448
#% 
#!
  
#*Proceedings of the ninth annual UT-ORNL-KBRIN Bioinformatics Summit 2010.
#@Eric C. Rouchka,Robert M. Flight,Claire Rinehart
#t2010
#cBMC Bioinformatics
#index2964400
#% 
#!
  
#*Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing.
#@Cristian Coarfa,Fuli Yu,Christopher A. Miller,Zuozhou Chen,R. Alan Harris,Aleksandar Milosavljevic
#t2010
#cBMC Bioinformatics
#index2964375
#% 
#!
  
#*Using Stochastic Causal Trees to Augment Bayesian Networks for Modeling eQTL Datasets.
#@Kyle C. Chipman,Ambuj K. Singh
#t2011
#cBMC Bioinformatics
#index2964431
#% 
#!
  
#*Investigating the effect of paralogs on microarray gene-set analysis.
#@Andre J. Faure,Cathal Seoighe,Nicola J. Mulder
#t2011
#cBMC Bioinformatics
#index2964485
#% 
#!
  
#*BiologicalNetworks 2.0 - an integrative view of genome biology data.
#@Sergey Kozhenkov,Yulia Dubinina,Mayya Sedova,Amarnath Gupta,Julia V. Ponomarenko,Michael Baitaluk
#t2010
#cBMC Bioinformatics
#index2964471
#% 
#!
  
#*Genomic analysis of a rare human tumor.
#@Steven J. M. Jones,Janessa Laskin,Yvonne Y. Li,Obi L. Griffith,Jianghong An,Mikhail Bilenky,Yaron S. N. Butterfield,Timothee Cezard,Eric Chuah,Richard Corbett,Anthony P. Fejes,Malachi Griffith,John Yee,Montgomery Martin,Michael Mayo,Nataliya Melnyk,Ryan D. Morin,Trevor J. Pugh,Tesa Severson,Sohrab P. Shah,Margaret Sutcliffe,Angela Tam,Jefferson Terry,Nina Thiessen,Thomas Thomson,Richard Varhol,Thomas Zeng,Yongjun Zhao,Richard A. Moore,David G. Huntsman,Inanç Birol,Martin Hirst,Robert A. Holt,Marco A. Marra
#t2010
#cBMC Bioinformatics
#index2964408
#% 
#!
  
#*OrthoInspector: comprehensive orthology analysis and visual exploration.
#@Benjamin Linard,Julie D. Thompson,Olivier Poch,Odile Lecompte
#t2011
#cBMC Bioinformatics
#index2964377
#% 
#!
  
#*Clustering gene expression data with a penalized graph-based metric.
#@Ariel E. Bayá,Pablo M. Granitto
#t2011
#cBMC Bioinformatics
#index2964474
#% 
#!
  
#*Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency.
#@Francis C. Weng,Chien-Hao Su,Ming-Tsung Hsu,Tse-Yi Wang,Huai-Kuang Tsai,Daryi Wang
#t2010
#cBMC Bioinformatics
#index2964370
#% 
#!
  
#*Content-based microarray search using differential expression profiles.
#@Jesse M. Engreitz,Alexander A. Morgan,Joel Dudley,Rong Chen,Rahul Thathoo,Russ B. Altman,Atul J. Butte
#t2010
#cBMC Bioinformatics
#index2964436
#% 
#!
  
#*Gene ontology based transfer learning for protein subcellular localization.
#@S. Mei,F. Wang,S. Zhou
#t2011
#cBMC Bioinformatics
#index2964497
#% 
#!
  
#*R2R - software to speed the depiction of aesthetic consensus RNA secondary structures.
#@Zasha Weinberg,Ronald R. Breaker
#t2011
#cBMC Bioinformatics
#index2964475
#% 
#!
  
#*Addressing the Challenge of Defining Valid Proteomic Biomarkers and Classifiers.
#@Mohammed Dakna,Keith Harris,Alexandros Kalousis,Sebastien Carpentier,Walter Kolch,Joost P. Schanstra,Marion Haubitz,Antonia Vlahou,Harald Mischak,Mark Girolami
#t2010
#cBMC Bioinformatics
#index2964457
#% 
#!
  
#*Pathway-based analysis using reduced gene subsets in genome-wide association studies.
#@Jingyuan Zhao,Simone Gupta,Mark Seielstad,Jianjun Liu,Anbupalam Thalamuthu
#t2011
#cBMC Bioinformatics
#index2964385
#% 
#!
  
#*Slim-Prim: an integrated data system for clinical and translational research.
#@Teeradache Viangteeravat,Ian M. Brooks,Somchan Vuthipadadon,Emin Kuscu,Naga Nagisetty,Ebony Smith,Ramin Homayouni,Chanchai McDonald
#t2010
#cBMC Bioinformatics
#index2964394
#% 
#!
  
#*VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R.
#@Hanbo Chen,Paul C. Boutros
#t2011
#cBMC Bioinformatics
#index2964484
#% 
#!
  
#*Context-dependent transcriptional regulations between signal transduction pathways.
#@Sohyun Hwang,Sangwoo Kim,Heesung Shin,Doheon Lee
#t2011
#cBMC Bioinformatics
#index2964441
#% 
#!
  
#*Next-gen sequencing of multi-drug resistant to determine antibiotic resistance genotypes.
#@Leon Dent,Dana Marshall,Robert Hulette,Siddharth Pratap
#t2010
#cBMC Bioinformatics
#index2964398
#% 
#!
  
#*Do pathogenic bacteria encode more secreted proteins than their non-pathogenic relatives?
#@Ahmed Abo-Bakr Mahmoud,Ramy K. Aziz
#t2010
#cBMC Bioinformatics
#index2964412
#% 
#!
  
#*Subsystems-based servers for rapid annotation of genomes and metagenomes.
#@Ramy K. Aziz
#t2010
#cBMC Bioinformatics
#index2964419
#% 
#!
  
#*Speeding up tandem mass spectrometry-based database searching by longest common prefix.
#@Chen Zhou,Hao Chi,Leheng Wang,You Li,Yan-Jie Wu,Yan Fu,Ruixiang Sun,Simin He
#t2010
#cBMC Bioinformatics
#index2964386
#% 
#!
  
#*Design of a DNA-based shift register.
#@Christy M. Gearheart,Eric C. Rouchka,Benjamin Arazi
#t2010
#cBMC Bioinformatics
#index2964393
#% 
#!
  
#*Application of Pearson correlation coefficient (PCC) and Kolmogorov-Smirnov distance (KSD) metrics to identify disease-specific biomarker genes.
#@Hung-Chung Huang,Siyuan Zheng,Zhongming Zhao
#t2010
#cBMC Bioinformatics
#index2964407
#% 
#!
  
#*MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity.
#@Wen Huang,Naoki Takebayashi,Yan Qi,Michael J. Hickerson
#t2011
#cBMC Bioinformatics
#index2964476
#% 
#!
  
#*An improved machine learning protocol for the identification of correct Sequest search results.
#@Morten Kallberg,Hui Lu
#t2010
#cBMC Bioinformatics
#index2964461
#% 
#!
  
#*Gene processing control loops suggested by sequencing, splicing, and RNA folding.
#@Clark D. Jeffries,Diana O. Perkins,Xiaojun Guan
#t2010
#cBMC Bioinformatics
#index2964458
#% 
#!
  
#*Sequence and annotation of the Wizard007 mycobacterium phage genome.
#@Ejike Anyanwu,Kaitlyn Cole,Karlee Driver,Anthony Falcone,Elizabeth Farnsworth,Benjamin Howard,Brittney Howard,Courtney Howard,Rodney A. King,Jordan Olberding,Mackenzie Perkins,Claire Rinehart,Heidi Sayre,Tyler Scaff,Sarah Schrader,Prasanna Tamarapu Parthasarathy,Cynthia Tope
#t2010
#cBMC Bioinformatics
#index2964433
#% 
#!
  
#*RISCI - Repeat Induced Sequence Changes Identifier: a comprehensive, comparative genomics-based, in silico subtractive hybridization pipeline to identify repeat induced sequence changes in closely related genomes.
#@Vipin Singh,Rakesh K. Mishra
#t2010
#cBMC Bioinformatics
#index2964472
#% 
#!
  
#*Merged consensus clustering to assess and improve class discovery with microarray data.
#@T. Ian Simpson,J. Douglas Armstrong,Andrew P. Jarman
#t2010
#cBMC Bioinformatics
#index2964434
#% 
#!
  
#*PileLine: a toolbox to handle genome position information in next-generation sequencing studies.
#@Daniel Glez-Peña,Gonzalo Gómez-López,Miguel Reboiro-Jato,Florentino Fdez-Riverola,David G. Pisano
#t2011
#cBMC Bioinformatics
#index2964491
#% 
#!
  
#*Knowledge-based biomedical word sense disambiguation: comparison of approaches.
#@Antonio Jimeno Yepes,Alan R. Aronson
#t2010
#cBMC Bioinformatics
#index2964373
#% 
#!
  
#*LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes.
#@Zeev Frenkel,Etienne Paux,David I. Mester,Catherine Feuillet,Abraham B. Korol
#t2010
#cBMC Bioinformatics
#index2964462
#% 
#!
  
#*iPhy: an integrated phylogenetic workbench for supermatrix analyses.
#@Martin O. Jones,Georgios D. Koutsovoulos,Mark L. Blaxter
#t2011
#cBMC Bioinformatics
#index2964483
#% 
#!
  
#*Tree Pruner: An efficient tool for selecting data from a biased genetic database.
#@Mohan Krishnamoorthy,Pragneshkumar Patel,Mira Dimitrijevic,Jonathan Dietrich,Margaret Green,Catherine Macken
#t2011
#cBMC Bioinformatics
#index2964498
#% 
#!
  
#*nocoRNAc: Characterization of non-coding RNAs in prokaryotes.
#@Alexander Herbig,Kay Nieselt
#t2011
#cBMC Bioinformatics
#index2964500
#% 
#!
  
#*Computing DNA duplex instability profiles efficiently with a two-state model: trends of promoters and binding sites.
#@Miriam R. Kantorovitz,Zoi Rapti,Vladimir Gelev,Anny Usheva
#t2010
#cBMC Bioinformatics
#index2964446
#% 
#!
  
#*Removing Noise From Pyrosequenced Amplicons.
#@Christopher Quince,Anders Lanzén,Russell J. Davenport,Peter J. Turnbaugh
#t2011
#cBMC Bioinformatics
#index2964505
#% 
#!
  
#*A Bayesian change-point algorithm for detecting copy number alteration.
#@Fridtjof Thomas,Stanley Pounds
#t2010
#cBMC Bioinformatics
#index2964411
#% 
#!
  
#*Linking genotype to phenotype with Bayesian network modeling of infection.
#@Jesse D. Ziebarth,Bao Li,Isao Miyairi,Yan Cui
#t2010
#cBMC Bioinformatics
#index2964402
#% 
#!
  
#*A two-step approach to qPCR experimental design and software for data analysis.
#@Huazhang Guo,Larry Tague,Ramesh Ray,Gabor Tigyi
#t2010
#cBMC Bioinformatics
#index2964410
#% 
#!
  
#*High-throughput sequencing of the DBA/2J mouse genome.
#@Xusheng Wang,Richa Agarwala,John A. Capra,Zugen Chen,Deanna M. Church,Daniel C. Ciobanu,Zhengsheng Li,Lu Lu,Khyobeni Mozhui,Megan K. Mulligan,Stanley F. Nelson,Katherine S. Pollard,William Taylor,Donald B. Thomason,Robert W. Williams
#t2010
#cBMC Bioinformatics
#index2964429
#% 
#!
  
#*WebGestalt2: an updated and expanded version of the Web-based Gene Set Analysis Toolkit.
#@Dexter T. Duncan,Naresh Prodduturi,Bing Zhang
#t2010
#cBMC Bioinformatics
#index2964425
#% 
#!
  
#*webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser.
#@Ari Löytynoja,Nick Goldman
#t2010
#cBMC Bioinformatics
#index2964447
#% 
#!
  
#*Initial steps towards a production platform for DNA sequence analysis on the grid.
#@Angela C. M. Luyf,Barbera D. C. van Schaik,Michel de Vries,Frank Baas,Antoine H. C. van Kampen,Sílvia D. Olabarriaga
#t2010
#cBMC Bioinformatics
#index2964469
#% 
#!
  
#*Haplotype association analyses in resources of mixed structure using Monte Carlo testing.
#@Ryan Abo,Jathine Wong,Alun Thomas,Nicola J. Camp
#t2010
#cBMC Bioinformatics
#index2964438
#% 
#!
  
#*FASIMU: flexible software for flux-balance computation series in large metabolic networks.
#@Andreas Hoppe,Sabrina Hoffmann,Andreas Gerasch,Christoph Gille,Hermann-Georg Holzhütter
#t2011
#cBMC Bioinformatics
#index2964482
#% 
#!
  
#*Inferring gene coexpression networks for low dose ionizing radiation using graph theoretical algorithms and systems genetics.
#@Sudhir Naswa,Gary L. Rogers Jr.,Rachel M. Lynch,Stephen A. Kania,Suchita Das,Elissa J. Chesler,Arnold M. Saxton,Brynn H. Voy,Michael A. Langston
#t2010
#cBMC Bioinformatics
#index2964396
#% 
#!
  
#*Molecular analysis of isolates obtained from raccoons in Warren and Barren counties of Kentucky.
#@LiPeng Bi,Chad Groce,Cheryl Davis
#t2010
#cBMC Bioinformatics
#index2964420
#% 
#!
  
#*Developing measures for microbial genome assembly quality control.
#@Rachel M. Adams,Jason B. Harris,Jeremy J. Jay,Beth G. Johnson,Miriam L. Land,Loren J. Hauser
#t2010
#cBMC Bioinformatics
#index2964392
#% 
#!
  
#*Peptide binding predictions for HLA DR, DP and DQ molecules.
#@Peng Wang,John Sidney,Yohan Kim,Alessandro Sette,Ole Lund,Morten Nielsen,Björn Peters
#t2010
#cBMC Bioinformatics
#index2964383
#% 
#!
  
#*Combining gene prediction methods to improve metagenomic gene annotation.
#@Non G. Yok,Gail L. Rosen
#t2011
#cBMC Bioinformatics
#index2964464
#% 
#!
  
#*SNPexp - A web tool for calculating and visualizing correlation between HapMap genotypes and gene expression levels.
#@Kristian Holm,Espen Melum,Andre Franke,Tom H. Karlsen
#t2010
#cBMC Bioinformatics
#index2964451
#% 
#!
  
#*Logical Development of the Cell Ontology.
#@Terrence F. Meehan,Anna Maria Masci,Amina Abdulla,Lindsay G. Cowell,Judith A. Blake,Christopher J. Mungall,Alexander D. Diehl
#t2011
#cBMC Bioinformatics
#index2964432
#% 
#!
  
#*CODA (CrossOver Distribution Analyzer): quantitative characterization of crossover position patterns along chromosomes.
#@Franck Gauthier,Olivier C. Martin,Matthieu Falque
#t2011
#cBMC Bioinformatics
#index2964487
#% 
#!
  
#*NClassG+: A classifier for non-classically secreted Gram-positive bacterial proteins.
#@Daniel Restrepo-Montoya,Camilo Pino,Luis F. Niño,Manuel E. Patarroyo,Manuel A. Patarroyo
#t2011
#cBMC Bioinformatics
#index2964384
#% 
#!
  
#*RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles.
#@Ozkan U. Nalbantoglu,Samuel F. Way,Steven H. Hinrichs,Khalid Sayood
#t2011
#cBMC Bioinformatics
#index2964507
#% 
#!
  
#*ASPDock: protein-protein docking algorithm using atomic solvation parameters model.
#@Lin Li,Dachuan Guo,Yangyu Huang,Shiyong Liu,Yi Xiao
#t2011
#cBMC Bioinformatics
#index2964492
#% 
#!
  
#*Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study.
#@Federica Viti,Ivan Merelli,Mieke Timmermans,Michael den Bakker,Francesco Beltrame,Peter Riegman,Luciano Milanesi
#t2010
#cBMC Bioinformatics
#index2964371
#% 
#!
  
#*Analysis of equine protein-coding gene structure and expression by RNA-sequencing.
#@Stephen J. Coleman,Zheng Zeng,Jinze Liu,James N. MacLeod
#t2010
#cBMC Bioinformatics
#index2964414
#% 
#!
  
#*MBAT: A scalable informatics system for unifying digital atlasing workflows.
#@Daren Lee,Seth Ruffins,Queenie Ng,Nikhil Sane,Steve Anderson,Arthur W. Toga
#t2010
#cBMC Bioinformatics
#index2964435
#% 
#!
  
#*Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.
#@Pan Du,Xiao Zhang,Chiang-Ching Huang,Nadereh Jafari,Warren A. Kibbe,Lifang Hou,Simon M. Lin
#t2010
#cBMC Bioinformatics
#index2964445
#% 
#!
  
#*Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis.
#@Tania Dottorini,Nicola Senin,Giorgio Mazzoleni,Kalle Magnusson,Andrea Crisanti
#t2011
#cBMC Bioinformatics
#index2964488
#% 
#!
  
#*Reticular Alignment: A progressive corner-cutting method for multiple sequence alignment.
#@Adrienn Szabo,Ádám Novák,István Miklós,Jotun Hein
#t2010
#cBMC Bioinformatics
#index2964376
#% 
#!
  
#*A two-step site and mRNA-level model for predicting microRNA targets.
#@Takaya Saito,Pål Sætrom
#t2010
#cBMC Bioinformatics
#index2964470
#% 
#!
  
#*IntelliGO: a new vector-based semantic similarity measure including annotation origin.
#@Sidahmed Benabderrahmane,Malika Smaïl-Tabbone,Olivier Poch,Amedeo Napoli,Marie-Dominique Devignes
#t2010
#cBMC Bioinformatics
#index2964463
#% 
#!
  
#*- a toolkit for computing experiments with distance-based methods for genome coevolution.
#@Elissaveta G. Arnaoudova,Jerzy W. Jaromczyk,Neil Moore,Christopher L. Schardl,Ruriko Yoshida
#t2010
#cBMC Bioinformatics
#index2964417
#% 
#!
  
#*SNPlotz: a generic genome plot tool to aid the SNP association studies.
#@Zhi-Liang Hu,Rex Fernando,Dorian Garrick,James M. Reecy
#t2010
#cBMC Bioinformatics
#index2964395
#% 
#!
  
#*Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling.
#@Stefan Wolfsheimer,Inke Herms,Sven Rahmann,Alexander K. Hartmann
#t2011
#cBMC Bioinformatics
#index2964506
#% 
#!
  
#*The UofL Microarray Facility: merger and new location.
#@S. Waigel,Xiaohong Li,Yinlu Chen,Vennila Arumugam,Nigel G. F. Cooper,Wolfgang Zacharias
#t2010
#cBMC Bioinformatics
#index2964409
#% 
#!
  
#*GCOD - GeneChip Oncology Database.
#@Fenglong Liu,Joseph White,Corina Antonescu,John Quackenbush
#t2011
#cBMC Bioinformatics
#index2964499
#% 
#!
  
#*The HHMI National Genomics Research Initiative at Western Kentucky University.
#@Rodney A. King,Claire Rinehart,Prasanna Tamarapu Parthasarathy
#t2010
#cBMC Bioinformatics
#index2964391
#% 
#!
  
#*Epigenetic control of signaling networks involved in interleukin-18-induced cardiac hypertrophy and its attenuation by pan-histone deacetylase inhibitors.
#@Gipsy Majumdar,Rajendra Raghow
#t2010
#cBMC Bioinformatics
#index2964399
#% 
#!
  
#*Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community.
#@Gary Schindelman,Jolene Fernandes,Carol Bastiani,Karen Yook,Paul W. Sternberg
#t2011
#cBMC Bioinformatics
#index2964481
#% 
#!
  
#*Preprocessing of gene expression data by optimally robust estimators.
#@Matthias Kohl,Hans-Peter Deigner
#t2010
#cBMC Bioinformatics
#index2964452
#% 
#!
  
#*The INTERPRET Decision-Support System version 3.0 for evaluation of Magnetic Resonance Spectroscopy data from human brain tumours and other abnormal brain masses.
#@Alexander Pérez-Ruiz,Margarida Julià-Sapé,Guillem Mercadal,Iván Olier,Carles Majós,Carles Arús
#t2010
#cBMC Bioinformatics
#index2964440
#% 
#!
  
#*A Platform for Processing Expression of Short Time Series (PESTS).
#@Anshu Sinha,Marianthi Markatou
#t2011
#cBMC Bioinformatics
#index2964413
#% 
#!
  
#*CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation.
#@Surendra Kumar,Tor Carlsen,Bjørn-Helge Mevik,Pål Enger,Rakel Blaalid,Kamran Shalchian-Tabrizi,Havard Kauserud
#t2011
#cBMC Bioinformatics
#index3062057
#% 
#!
  
#*MRCQuant- an accurate LC/MS relative isotopic quantification algorithm on TOF instruments.
#@William H. Haskins,Konstantinos Petritis,Jianqiu Zhang
#t2011
#cBMC Bioinformatics
#index3062058
#% 
#!
  
#*AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm.
#@Jihoon Kim,Kiltesh Patel,Hyunchul Jung,Winston Patrick Kuo,Lucila Ohno-Machado
#t2011
#cBMC Bioinformatics
#index3062062
#% 
#!
  
#*Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles.
#@Richard Tzong-Han Tsai,Po-Ting Lai
#t2011
#cBMC Bioinformatics
#index3062048
#% 
#!
  
#*Novel computational analysis of protein binding microarray data identifies direct targets of Nkx2.2 in the pancreas.
#@Jonathon T. Hill,Keith R. Anderson,Teresa L. Mastracci,Klaus H. Kaestner,Lori Sussel
#t2011
#cBMC Bioinformatics
#index3062049
#% 
#!
  
#*Appearance frequency modulated gene set enrichment testing.
#@Jun Ma,Maureen A. Sartor,H. V. Jagadish
#t2011
#cBMC Bioinformatics
#index3062056
#% 
#!
  
#*Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays.
#@Johannes Eichner,Georg Zeller,Sascha Laubinger,Gunnar Rätsch
#t2011
#cBMC Bioinformatics
#index3062044
#% 
#!
  
#*The impact of quantitative optimization of hybridization conditions on gene expression analysis.
#@Peter Sykacek,David P. Kreil,Lisa A. Meadows,Richard P. Auburn,Bettina Fischer,Steven Russell,Gos Micklem
#t2011
#cBMC Bioinformatics
#index3062063
#% 
#!
  
#*Multiclass classification of microarray data samples with a reduced number of genes.
#@Elizabeth Tapia,Leonardo Ornella,Pilar Bulacio,Laura Angelone
#t2011
#cBMC Bioinformatics
#index3062046
#% 
#!
  
#*ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry.
#@Mi-Youn K. Brusniak,Sung-Tat Kwok,Mark Christiansen,David Campbell,Lukas Reiter,Paola Picotti,Ulrike Kusebauch,Hector Ramos,Eric W. Deutsch,Jingchun Chen,Robert L. Moritz,Ruedi Aebersold
#t2011
#cBMC Bioinformatics
#index3062055
#% 
#!
  
#*Motif-guided sparse decomposition of gene expression data for regulatory module identification.
#@Ting Gong,Jianhua Xuan,Li Chen,Rebecca B. Riggins,Huai Li,Eric P. Hoffman,Robert Clarke,Yue Wang
#t2011
#cBMC Bioinformatics
#index3062064
#% 
#!
  
#*compomics-utilities: an open-source Java library for computational proteomics.
#@Harald Barsnes,Marc Vaudel,Niklaas Colaert,Kenny Helsens,Albert Sickmann,Frode S. Berven,Lennart Martens
#t2011
#cBMC Bioinformatics
#index3062060
#% 
#!
  
#*Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips.
#@Matthew E. Ritchie,Ruijie Liu,Benilton Carvalho,Rafael A. Irizarry
#t2011
#cBMC Bioinformatics
#index3062054
#% 
#!
  
#*The dChip survival analysis module for microarray data.
#@Samir B. Amin,Parantu K. Shah,Aimin Yan,Sophia Adamia,Stephane Minvielle,Herve Avet-Loiseau,Nikhil C. Munshi,Cheng Li
#t2011
#cBMC Bioinformatics
#index3062065
#% 
#!
  
#*Bio: : Phylo - phyloinformatic analysis using Perl.
#@Rutger A. Vos,Jason Caravas,Klaas Hartmann,Mark A. Jensen,Chase Miller
#t2011
#cBMC Bioinformatics
#index3062047
#% 
#!
  
#*A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models.
#@Juliana S. Bernardes,Alessandra Carbone,Gerson Zaverucha
#t2011
#cBMC Bioinformatics
#index3062061
#% 
#!
  
#*Simulated evolution applied to study the genetic code optimality using a model of codon reassignments.
#@José Santos,Ángel Monteagudo
#t2011
#cBMC Bioinformatics
#index3062042
#% 
#!
  
#*Identifying hypermethylated CpG islands using a quantile regression model.
#@Shuying Sun,Zhengyi Chen,Pearlly Yan,Yi-Wen Huang,Tim Hui-Ming Huang,Shili Lin
#t2011
#cBMC Bioinformatics
#index3062045
#% 
#!
  
#*A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines.
#@Marcin Cieslik,Cameron Mura
#t2011
#cBMC Bioinformatics
#index3062053
#% 
#!
  
#*Meta-analysis of gene expression microarrays with missing replicates.
#@Fan Shi,Gad Abraham,Christopher Leckie,Izhak Haviv,Adam Kowalczyk
#t2011
#cBMC Bioinformatics
#index3062066
#% 
#!
  
#*Clinical Synopsis Search in OMIM.
#@Raphael Cohen,Avitan Gefen,Michael Elhadad,Ohad S. Birk
#t2011
#cBMC Bioinformatics
#index3062052
#% 
#!
  
#*Taxon ordering in phylogenetic trees: a workbench test.
#@Francesco Cerutti,Luigi Bertolotti,Tony L. Goldberg,Mario Giacobini
#t2011
#cBMC Bioinformatics
#index3062050
#% 
#!
  
#*Bioinformatics analysis of disordered proteins in prokaryotes.
#@Gordana Pavlovic-Lazetic,Nenad S. Mitic,Jovana J. Kovacevic,Zoran Obradovic,Sasa N. Malkov,Milos V. Beljanski
#t2011
#cBMC Bioinformatics
#index3062059
#% 
#!
  
#*Tiling array data analysis: a multiscale approach using wavelets.
#@Alexander Karpikov,Joel S. Rozowsky,Mark Gerstein
#t2011
#cBMC Bioinformatics
#index3062043
#% 
#!
  
#*A Computational Framework for Proteome-Wide Pursuit and Prediction of Metalloproteins using ICP-MS and MS/MS Data.
#@W. Andrew Lancaster,Jeremy L. Praissman,Farris L. Poole II,Aleksandar Cvetkovic,Angeli L. Menon,Joseph W. Scott,Francis E. Jenney Jr.,Michael P. Thorgersen,Ewa Kalisiak,Junefredo V. Apon,Sunia A. Trauger,Gary Siuzdak,John A. Tainer,Michael W. W. Adams
#t2011
#cBMC Bioinformatics
#index3062051
#% 
#!
  
#*Enriching for Correct Prediction of Biological Processes Using a Combination of Diverse Classifiers.
#@Daijin Ko,Brad Windle
#t2011
#cBMC Bioinformatics
#index3062041
#% 
#!
  
#*Classification of viral zoonosis through receptor pattern analysis.
#@Se-Eun Bae,Hyeon Seok Son
#t2011
#cBMC Bioinformatics
#index3062084
#% 
#!
  
#*Computational study of noise in a large signal transduction network.
#@Jukka Intosalmi,Tiina Manninen,Keijo Ruohonen,Marja-Leena Linne
#t2011
#cBMC Bioinformatics
#index3062223
#% 
#!
  
#*Enhancements to the ADMIXTURE Algorithm for Individual Ancestry Estimation.
#@David H. Alexander,Kenneth Lange
#t2011
#cBMC Bioinformatics
#index3062239
#% 
#!
  
#*Wavelet-based identification of DNA focal genomic aberrations from single nucleotide polymorphism arrays.
#@Youngmi Hur,Hyunju Lee
#t2011
#cBMC Bioinformatics
#index3062165
#% 
#!
  
#*CASCADE_SCAN: mining signal transduction network from high-throughput data based on steepest descent method.
#@Kai Wang,Fuyan Hu,Kejia Xu,Hua Cheng,Meng Jiang,Ruili Feng,Jing Li,Tieqiao Wen
#t2011
#cBMC Bioinformatics
#index3062143
#% 
#!
  
#*Extracting scientific articles from a large digital archive: BioStor and the Biodiversity Heritage Library.
#@Roderic D. M. Page
#t2011
#cBMC Bioinformatics
#index3062188
#% 
#!
  
#*LabKey Server: An open source platform for scientific data integration, analysis and collaboration.
#@Elizabeth K. Nelson,Britt Piehler,Josh Eckels,Adam Rauch,Matthew Bellew,Peter Hussey,Sarah Ramsay,Cory Nathe,Karl Lum,Kevin Krouse,David Stearns,Brian Connolly,Tom Skillman,Mark Igra
#t2011
#cBMC Bioinformatics
#index3062071
#% 
#!
  
#*New methods to measure residues coevolution in proteins.
#@Hongyun Gao,Yongchao Dou,Jialiang Yang,Jun Wang
#t2011
#cBMC Bioinformatics
#index3062192
#% 
#!
  
#*Cancer Computational Biology.
#@Zohar Yakhini,Igor Jurisica
#t2011
#cBMC Bioinformatics
#index3062112
#% 
#!
  
#*CDAO-Store: Ontology-driven Data Integration for Phylogenetic Analysis.
#@Brandon Chisham,Ben Wright,Trung Le,Tran Cao Son,Enrico Pontelli
#t2011
#cBMC Bioinformatics
#index3062086
#% 
#!
  
#*Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars.
#@Zsuzsanna Sukosd,Bjarne Knudsen,Morten Vaerum,Jorgen Kjems,Ebbe Sloth Andersen
#t2011
#cBMC Bioinformatics
#index3062098
#% 
#!
  
#*Study of large and highly stratified population datasets by combining iterative pruning principal component analysis and STRUCTURE.
#@Tulaya Limpiti,Apichart Intarapanich,Anunchai Assawamakin,Philip J. Shaw,Pongsakorn Wangkumhang,Jittima Piriyapongsa,Chumpol Ngamphiw,Sissades Tongsima
#t2011
#cBMC Bioinformatics
#index3062237
#% 
#!
  
#*MINE: Module Identification in NEtworks.
#@Kahn Rhrissorrakrai,Kristin C. Gunsalus
#t2011
#cBMC Bioinformatics
#index3062174
#% 
#!
  
#*Hydrophobic pulses predict transmembrane helix irregularities and channel transmembrane units.
#@Damien Paulet,Mireille Claustres,Christophe Béroud
#t2011
#cBMC Bioinformatics
#index3062125
#% 
#!
  
#*dbOGAP - An Integrated Bioinformatics Resource for Protein O-GlcNAcylation.
#@Jinlian Wang,Manabu Torii,Hongfang Liu,Gerald W. Hart,Zhang-Zhi Hu
#t2011
#cBMC Bioinformatics
#index3062079
#% 
#!
  
#*Bacterial syntenies: an exact approach with gene quorum.
#@Yves-Pol Deniélou,Marie-France Sagot,Frédéric Boyer,Alain Viari
#t2011
#cBMC Bioinformatics
#index3062130
#% 
#!
  
#*SNPPicker: High quality tag SNP selection across multiple populations.
#@Hugues Sicotte,David N. Rider,Gregory A. Poland,Neelam Dhiman,Jean-Pierre Kocher
#t2011
#cBMC Bioinformatics
#index3062116
#% 
#!
  
#*PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus genome.
#@Jiajie Zhang,Amir Madany Mamlouk,Thomas Martinetz,Suhua Chang,Jing Wang,Rolf Hilgenfeld
#t2011
#cBMC Bioinformatics
#index3062242
#% 
#!
  
#*PI: An open-source software package for validation of the SEQUEST result and visualization of mass spectrum.
#@Yantao Qiao,Hong Zhang,Dongbo Bu,Shiwei Sun
#t2011
#cBMC Bioinformatics
#index3062230
#% 
#!
  
#*Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences.
#@Adam Amos-Binks,Catalin Patulea,Sylvain Pitre,Andrew Schoenrock,Yuan Gui,James R. Green,Ashkan Golshani,Frank K. H. A. Dehne
#t2011
#cBMC Bioinformatics
#index3062207
#% 
#!
  
#*Biomarker Discovery and Redundancy Reduction towards Classification using a Multi-factorial MALDI-TOF MS T2DM Mouse Model Dataset.
#@Chris Bauer,Frank Kleinjung,Celia J. Smith,Mark W. Towers,Ali Tiss,Alexandra Chadt,Tanja Dreja,Dieter Beule,Hadi Al-Hasani,Knut Reinert,Johannes Schuchhardt,Rainer Cramer
#t2011
#cBMC Bioinformatics
#index3062153
#% 
#!
  
#*Structator: fast index-based search for RNA sequence-structure patterns.
#@Fernando Meyer,Stefan Kurtz,Rolf Backofen,Sebastian Will,Michael Beckstette
#t2011
#cBMC Bioinformatics
#index3062179
#% 
#!
  
#*Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation.
#@Antonio José Jimeno-Yepes,Bridget T. McInnes,Alan R. Aronson
#t2011
#cBMC Bioinformatics
#index3062216
#% 
#!
  
#*Meta-Alignment with Crumble and Prune: Partitioning very large alignment problems for performance and parallelization.
#@Krishna M. Roskin,Benedict Paten,David Haussler
#t2011
#cBMC Bioinformatics
#index3062129
#% 
#!
  
#*Normalization and centering of array-based heterologous genome hybridization between species of unknown or unequal divergence.
#@Brian J. Darby,Kenneth L. Jones,David Wheeler,Michael A. Herman
#t2011
#cBMC Bioinformatics
#index3062166
#% 
#!
  
#*SAQC: SNP array quality control.
#@Hsin-Chou Yang,Hsin-Chi Lin,Meijyh Kang,Chun-Houh Chen,Chien-Wei Lin,Ling-Hui Li,Jer-Yuarn Wu,Yuan-Tsong Chen,Wen-Harn Pan
#t2011
#cBMC Bioinformatics
#index3062101
#% 
#!
  
#*Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in Breast Cancer.
#@Hiroko K. Solvang,Ole Christian Lingjærde,Arnoldo Frigessi,Anne-Lise Børresen-Dale,Vessela N. Kristensen
#t2011
#cBMC Bioinformatics
#index3062193
#% 
#!
  
#*NeurphologyJ: an automatic neuronal morphology quantification method and its application in pharmacological discovery.
#@Shinn-Ying Ho,Chih-Yuan Chao,Hui-Ling Huang,Tzai-Wen Chiu,Phasit Charoenkwan,Eric Hwang
#t2011
#cBMC Bioinformatics
#index3062212
#% 
#!
  
#*miRFam: an effective automatic miRNA classification method based on n-grams and a multiclass SVM.
#@Jiandong Ding,Shuigeng Zhou,Jihong Guan
#t2011
#cBMC Bioinformatics
#index3062138
#% 
#!
  
#*Exploring subdomain variation in biomedical language.
#@Thomas Lippincott,Diarmuid Ó Séaghdha,Anna Korhonen
#t2011
#cBMC Bioinformatics
#index3062184
#% 
#!
  
#*A hidden two-locus disease association pattern in genome-wide association studies.
#@Can Yang,Xiang Wan,Qiang Yang,Hong Xue,Nelson L. S. Tang,Weichuan Yu
#t2011
#cBMC Bioinformatics
#index3062144
#% 
#!
  
#*Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies.
#@Joshua Wetzel,Carl Kingsford,Mihai Pop
#t2011
#cBMC Bioinformatics
#index3062087
#% 
#!
  
#*Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure.
#@Zafer Aydin,Ajit Singh,Jeff Bilmes,William Stafford Noble
#t2011
#cBMC Bioinformatics
#index3062142
#% 
#!
  
#*Ultra-fast sequence clustering from similarity networks with SiLiX.
#@Vincent Miele,Simon Penel,Laurent Duret
#t2011
#cBMC Bioinformatics
#index3062108
#% 
#!
  
#*Network based transcription factor analysis of regenerating axolotl limbs.
#@Deepali Jhamb,Nandini Rao,Derek J. Milner,Fengyu Song,Jo Ann Cameron,David L. Stocum,Mathew J. Palakal
#t2011
#cBMC Bioinformatics
#index3062070
#% 
#!
  
#*Identifier mapping performance for integrating transcriptomics and proteomics experimental results.
#@Roger S. Day,Kevin K. McDade,Uma R. Chandran,Alex Lisovich,Thomas P. Conrads,Brian L. Hood,Vs Kumar Kolli,David Kirchner,Tracy Litzi,G. Larry Maxwell
#t2011
#cBMC Bioinformatics
#index3062198
#% 
#!
  
#*An automated homology-based approach for identifying transposable elements.
#@Ryan C. Kennedy,Maria F. Unger,Scott Christley,Frank H. Collins,Gregory R. Madey
#t2011
#cBMC Bioinformatics
#index3062124
#% 
#!
  
#*Multiple Testing for Gene Sets from Microarray Experiments.
#@Insuk Sohn,Kouros Owzar,Johan Lim,Stephen L. George,Stephanie MacKey Cushman,Sin-Ho Jung
#t2011
#cBMC Bioinformatics
#index3062176
#% 
#!
  
#*Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis.
#@Artem Lysenko,Michael Defoin-Platel,Keywan Hassani-Pak,Jan Taubert,Charlie Hodgman,Christopher J. Rawlings,Mansoor Saqi
#t2011
#cBMC Bioinformatics
#index3062167
#% 
#!
  
#*Semi-Automatic Segmentation of Multiple Mouse Embryos in MR Images.
#@Leila Baghdadi,Mojdeh Zamyadi,John G. Sled,Jürgen E. Schneider,Shuomo Bhattacharya,R. Mark Henkelman,Jason P. Lerch
#t2011
#cBMC Bioinformatics
#index3062229
#% 
#!
  
#*RAG: An Update to the RNA-As-Graphs Resource.
#@Joseph A. Izzo,Namhee Kim,Shereef Elmetwaly,Tamar Schlick
#t2011
#cBMC Bioinformatics
#index3062215
#% 
#!
  
#*Identification of models of heterogeneous cell populations from population snapshot data.
#@Jan Hasenauer,Steffen Waldherr,Malgorzata Doszczak,Nicole Radde,Peter Scheurich,Frank Allgöwer
#t2011
#cBMC Bioinformatics
#index3062115
#% 
#!
  
#*PheMaDB: A solution for storage, retrieval, and analysis of high throughput phenotype data.
#@Wenling E. Chang,Keri Sarver,Brandon W. Higgs,Timothy D. Read,Nichole M. E. Nolan,Carol E. Chapman,Kimberly A. Bishop-Lilly,Shanmuga Sozhamannan
#t2011
#cBMC Bioinformatics
#index3062109
#% 
#!
  
#*Sequential Interim Analyses of Survival Data in DNA Microarray Experiments.
#@Andreas Leha,Tim Beißbarth,Klaus Jung
#t2011
#cBMC Bioinformatics
#index3062117
#% 
#!
  
#*Empirical Bayesian models for analysing molecular serotyping microarrays.
#@Richard Newton,Jason Hinds,Lorenz Wernisch
#t2011
#cBMC Bioinformatics
#index3062082
#% 
#!
  
#*Extension of the Bayesian Alphabet for Genomic Selection.
#@David Habier,Rohan L. Fernando,Kadir Kizilkaya,Dorian Garrick
#t2011
#cBMC Bioinformatics
#index3062201
#% 
#!
  
#*Towards an Age-Phenome Knowledge-base.
#@Nophar Geifman,Eitan Rubin
#t2011
#cBMC Bioinformatics
#index3062217
#% 
#!
  
#*Phenotype Recognition with Combined Features and Random Subspace Classifier Ensemble.
#@Bailing Zhang,Tuan D. Pham
#t2011
#cBMC Bioinformatics
#index3062128
#% 
#!
  
#*PeakRanger: A cloud-enabled peak caller for ChIP-seq data.
#@Xin Feng,Robert Grossman,Lincoln Stein
#t2011
#cBMC Bioinformatics
#index3062152
#% 
#!
  
#*Mapping the distribution of packing topologies within protein interiors shows predominant preference for specific packing motifs.
#@Sankar Basu,Dhananjay Bhattacharyya,Rahul Banerjee
#t2011
#cBMC Bioinformatics
#index3062189
#% 
#!
  
#*Efficient alignment of pyrosequencing reads for re-sequencing applications.
#@Francisco Fernandes,Paulo G. S. da Fonseca,Luís M. S. Russo,Arlindo L. Oliveira,Ana T. Freitas
#t2011
#cBMC Bioinformatics
#index3062145
#% 
#!
  
#*HemeBIND: a novel method for heme binding residue prediction by combining structural and sequence information.
#@Rong Liu,Jianjun Hu
#t2011
#cBMC Bioinformatics
#index3062187
#% 
#!
  
#*Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny.
#@Qin Chang,Yihui Luan,Fengzhu Sun
#t2011
#cBMC Bioinformatics
#index3062091
#% 
#!
  
#*Acorn: A grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface.
#@Jacek Sroka,Lukasz Bieniasz-Krzywiec,Szymon Gwozdz,Dariusz Leniowski,Jakub Lacki,Mateusz Markowski,Claudio Avignone-Rossa,Michael E. Bushell,Johnjoe McFadden,Andrzej M. Kierzek
#t2011
#cBMC Bioinformatics
#index3062190
#% 
#!
  
#*MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model.
#@Antony Le Béchec,Elodie Portales-Casamar,Guillaume Vetter,Michèle Moes,Pierre-Joachim Zindy,Anne Saumet,David J. Arenillas,Charles Theillet,Wyeth W. Wasserman,Charles-Henri Lecellier,Evelyne Friederich
#t2011
#cBMC Bioinformatics
#index3062067
#% 
#!
  
#*NSMAP: A Method for Spliced Isoforms Identification and Quantification from RNA-Seq.
#@Zheng Xia,Jianguo Wen,Chung-Che Chang,Xiaobo Zhou
#t2011
#cBMC Bioinformatics
#index3062139
#% 
#!
  
#*Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes.
#@Zhihua Zhang,Michael Q. Zhang
#t2011
#cBMC Bioinformatics
#index3062073
#% 
#!
  
#*PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment.
#@Botond Sipos,Tim Massingham,Gregory E. Jordan,Nick Goldman
#t2011
#cBMC Bioinformatics
#index3062114
#% 
#!
  
#*HomPPI: A Class of Sequence Homology Based Protein-Protein Interface Prediction Methods.
#@Li C. Xue,Drena Dobbs,Vasant Honavar
#t2011
#cBMC Bioinformatics
#index3062228
#% 
#!
  
#*Detection of recurrent rearrangement breakpoints from copy number data.
#@Anna M. Ritz,Pamela L. Paris,Michael Ittmann,Colin Collins,Benjamin J. Raphael
#t2011
#cBMC Bioinformatics
#index3062095
#% 
#!
  
#*ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data.
#@Osvaldo Zagordi,Arnab Bhattacharya,Nicholas Eriksson,Niko Beerenwinkel
#t2011
#cBMC Bioinformatics
#index3062100
#% 
#!
  
#*rnaSeqMap: a Bioconductor package for RNA sequencing data exploration.
#@Anna Lesniewska,Michal J. Okoniewski
#t2011
#cBMC Bioinformatics
#index3062186
#% 
#!
  
#*GPCR-SSFE: A comprehensive database of G-protein-coupled receptor template predictions and homology models.
#@Catherine L. Worth,Annika Kreuchwig,Gunnar Kleinau,Gerd Krause
#t2011
#cBMC Bioinformatics
#index3062178
#% 
#!
  
#*SNP-based pathway enrichment analysis for genome-wide association studies.
#@Lingjie Weng,Fabio Macciardi,Aravind Subramanian,Guia Guffanti,Steven G. Potkin,Zhaoxia Yu,Xiaohui Xie
#t2011
#cBMC Bioinformatics
#index3062088
#% 
#!
  
#*More accurate recombination prediction in HIV-1 using a robust decoding algorithm for HMMs.
#@Jakub Truszkowski,Daniel Gregory Brown
#t2011
#cBMC Bioinformatics
#index3062141
#% 
#!
  
#*PeptX: Using Genetic Algorithms to optimize peptides for MHC binding.
#@Bernhard Knapp,Verena Giczi,Reiner Ribarics,Wolfgang Schreiner
#t2011
#cBMC Bioinformatics
#index3062227
#% 
#!
  
#*Kernel density weighted loess normalization improves the performance of detection within asymmetrical data.
#@Wen-Ping Hsieh,Tzu-Ming Chu,Yu-Min Lin,Russell D. Wolfinger
#t2011
#cBMC Bioinformatics
#index3062214
#% 
#!
  
#*Assessments of Affymetrix GeneChip Microarray Quality for Laboratories and Single Samples.
#@Matthew N. McCall,Peter N. Murakami,Margus Lukk,Wolfgang Huber,Rafael A. Irizarry
#t2011
#cBMC Bioinformatics
#index3062127
#% 
#!
  
#*LAVA: An Open-Source Approach To Designing LAMP (Loop-Mediated Isothermal Amplification) DNA Signatures.
#@Clinton Torres,Elizabeth A. Vitalis,Brian R. Baker,Shea N. Gardner,Marisa W. Torres,John M. Dzenitis
#t2011
#cBMC Bioinformatics
#index3062232
#% 
#!
  
#*Stochastic sequence-level model of coupled transcription and translation in prokaryotes.
#@Jarno Makela,Jason Lloyd-Price,Olli Yli-Harja,Andre S. Ribeiro
#t2011
#cBMC Bioinformatics
#index3062106
#% 
#!
  
#*Discrimination of Approved Drugs from Experimental Drugs by Learning Methods.
#@Kailin Tang,Ruixin Zhu,Yixue Li,Zhi-Wei Cao
#t2011
#cBMC Bioinformatics
#index3062132
#% 
#!
  
#*NCACO-score: An effective main-chain dependent scoring function for structure modeling.
#@Liqing Tian,Aiping Wu,Yang Cao,Xiaoxi Dong,Yun Hu,Taijiao Jiang
#t2011
#cBMC Bioinformatics
#index3062191
#% 
#!
  
#*Rebooting the human mitochondrial phylogeny: an automated and scalable methodology with expert knowledge.
#@Roberto Blanco,Elvira Mayordomo,Julio Montoya,Eduardo Ruiz-Pesini
#t2011
#cBMC Bioinformatics
#index3062196
#% 
#!
  
#*A comparison and user-based evaluation of models of textual information structure in the context of cancer risk assessment.
#@Yufan Guo,Anna Korhonen,Maria Liakata,Ilona Silins,Johan Hogberg,Ulla Stenius
#t2011
#cBMC Bioinformatics
#index3062072
#% 
#!
  
#*A user-friendly web portal for T-Coffee on supercomputers.
#@Josep Rius Torrento,Fernando Cores,Francesc Solsona,Jano I. van Hemert,Jos Koetsier,Cédric Notredame
#t2011
#cBMC Bioinformatics
#index3062122
#% 
#!
  
#*Tree Edit Distance for Leaf-labelled trees on free leafset and its comparison with Frequent Subsplit dissimilarity and popular distance measures.
#@Jakub Koperwas,Krzysztof Walczak
#t2011
#cBMC Bioinformatics
#index3062205
#% 
#!
  
#*Protein alignment algorithms with an efficient backtracking routine on multiple GPUs.
#@Jacek Blazewicz,Wojciech Frohmberg,Michal Kierzynka,Erwin Pesch,Pawel Wojciechowski
#t2011
#cBMC Bioinformatics
#index3062169
#% 
#!
  
#*Implementation of Force Distribution Analysis for Molecular Dynamics simulations.
#@Wolfram Stacklies,Christian Seifert,Frauke Graeter
#t2011
#cBMC Bioinformatics
#index3062107
#% 
#!
  
#*Detection of viral sequence fragments of HIV-1 subfamilies yet unknown.
#@Thomas Unterthiner,Anne-Kathrin Schultz,Jan Bulla,Burkhard Morgenstern,Mario Stanke,Ingo Bulla
#t2011
#cBMC Bioinformatics
#index3062085
#% 
#!
  
#*MixtureTree: a program for constructing phylogeny.
#@Shu-Chuan Chen,Michael S. Rosenberg,Bruce G. Lindsay
#t2011
#cBMC Bioinformatics
#index3062103
#% 
#!
  
#*FFCA: a feasibility-based method for flux coupling analysis of metabolic networks.
#@László Dávid,Sayed-Amir Marashi,Abdelhalim Larhlimi,Bettina Mieth,Alexander Bockmayr
#t2011
#cBMC Bioinformatics
#index3062240
#% 
#!
  
#*Objective identification of residue ranges for the superposition of protein structures.
#@Donata K. Kirchner,Peter Güntert
#t2011
#cBMC Bioinformatics
#index3062151
#% 
#!
  
#*Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis.
#@Marcus Lechner,Sven Findeiß,Lydia Steiner,Manja Marz,Peter F. Stadler,Sonja J. Prohaska
#t2011
#cBMC Bioinformatics
#index3062126
#% 
#!
  
#*A Scan Statistic to Extract Causal Gene Clusters from Case-Control Genome-wide Rare CNV Data.
#@Takeshi Nishiyama,Kunihiko Takahashi,Toshiro Tango,Dalila Pinto,Stephan W. Scherer,Satoshi Takami,Hirohisa Kishino
#t2011
#cBMC Bioinformatics
#index3062181
#% 
#!
  
#*Learning genetic epistasis using Bayesian network scoring criteria.
#@Xia Jiang,Richard E. Neapolitan,M. Michael Barmada,Shyam Visweswaran
#t2011
#cBMC Bioinformatics
#index3062080
#% 
#!
  
#*ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFs.
#@Christopher C. Overall,D. Andrew Carr,Ehsan S. Tabari,Kevin J. Thompson,Jennifer W. Weller
#t2011
#cBMC Bioinformatics
#index3062123
#% 
#!
  
#*MicroSyn: A user friendly tool for detection of microsynteny in a gene family.
#@Bin Cai,Xiaohan Yang,Gerald A. Tuskan,(Max) Zong-Ming Cheng
#t2011
#cBMC Bioinformatics
#index3062075
#% 
#!
  
#*TAFFEL: Independent Enrichment Analysis of gene sets.
#@Mitja I. Kurki,Jussi Paananen,Markus Storvik,Seppo Yla-Herttuala,Juha E. Jaaskelainen,Mikael von und zu Fraunberg,Garry Wong,Petri Pehkonen
#t2011
#cBMC Bioinformatics
#index3062140
#% 
#!
  
#*NORMA-Gene: A simple and robust method for qPCR normalization based on target gene data.
#@Lars-Henrik Heckmann,Peter B. Sørensen,Paul Henning Krogh,Jesper G. Sorensen
#t2011
#cBMC Bioinformatics
#index3062226
#% 
#!
  
#*Estimation of allele frequency and association mapping using next-generation sequencing data.
#@Su Yeon Kim,Kirk E. Lohmueller,Anders Albrechtsen,Yingrui Li,Thorfinn Korneliussen,Geng Tian,Niels Grarup,Tao Jiang,Gitte Andersen,Daniel Witte,Torben Jorgensen,Torben Hansen,Oluf Pedersen,Jun Wang,Rasmus Nielsen
#t2011
#cBMC Bioinformatics
#index3062206
#% 
#!
  
#*A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using SNP array data.
#@Juan R. González,Benjamin Rodriguez-Santiago,Alejandro Cáceres,Roger Pique-Regi,Nathaniel Rothman,Stephen J. Chanock,Lluís Armengol,Luis A. Perez-Jurado
#t2011
#cBMC Bioinformatics
#index3062150
#% 
#!
  
#*Brunn: An open source laboratory information system for microplates with a graphical plate layout design process.
#@Jonathan Alvarsson,Claes Andersson,Ola Spjuth,Rolf Larsson,Jarl E. S. Wikberg
#t2011
#cBMC Bioinformatics
#index3062168
#% 
#!
  
#*PRIN, a predicted rice interactome network.
#@Haibin Gu,Pengcheng Zhu,Yinming Jiao,Yijun Meng,Ming Chen
#t2011
#cBMC Bioinformatics
#index3062157
#% 
#!
  
#*ENGINES: exploring single nucleotide variation in entire human genomes.
#@Jorge Amigo,Antonio Salas,Christopher Phillips
#t2011
#cBMC Bioinformatics
#index3062093
#% 
#!
  
#*An application of kernel methods to variety identification based on SSR markers genetic fingerprinting.
#@Florian Martin
#t2011
#cBMC Bioinformatics
#index3062199
#% 
#!
  
#*Screening synteny blocks in pairwise genome comparisons through integer programming.
#@Haibao Tang,Eric Lyons,Brent S. Pedersen,James C. Schnable,Andrew H. Paterson,Michael Freeling
#t2011
#cBMC Bioinformatics
#index3062097
#% 
#!
  
#*StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase.
#@Adam Zemla,Dorothy M. Lang,Tanya Kostova,Raul Andino,Carol L. Ecale Zhou
#t2011
#cBMC Bioinformatics
#index3062209
#% 
#!
  
#*pROC: an open-source package for R and S+ to analyze and compare ROC curves.
#@Xavier Robin,Natacha Turck,Alexandre Hainard,Natalia Tiberti,Frédérique Lisacek,Jean-Charles Sanchez,Markus Muller
#t2011
#cBMC Bioinformatics
#index3062069
#% 
#!
  
#*Joint Analysis of Transcriptional and post- Transcriptional Data: Searching Emergent Properties in Brain Tumor Samples.
#@Raffaele Fronza,Michele Tramonti,William R. Atchley,Christine Nardini
#t2011
#cBMC Bioinformatics
#index3062076
#% 
#!
  
#*OntoCAT - simple ontology search and integration in Java, R and REST/JavaScript.
#@Tomasz Adamusiak,Tony Burdett,Natalja Kurbatova,K. Joeri van der Velde,Niran Abeygunawardena,Despoina Antonakaki,Misha Kapushesky,Helen E. Parkinson,Morris A. Swertz
#t2011
#cBMC Bioinformatics
#index3062197
#% 
#!
  
#*BICEPP: an example-based statistical text mining method for predicting the binary characteristics of drugs.
#@Frank P. Y. Lin,Stephen Anthony,Thomas M. Polasek,Guy Tsafnat,Matthew P. Doogue
#t2011
#cBMC Bioinformatics
#index3062104
#% 
#!
  
#*HTPheno: An Image Analysis Pipeline for High-Throughput Plant Phenotyping.
#@Anja Hartmann,Tobias Czauderna,Roberto Hoffmann,Nils Stein,Falk Schreiber
#t2011
#cBMC Bioinformatics
#index3062148
#% 
#!
  
#*Identification of microRNA precursors based on random forest with network-level representation method of stem-loop structure.
#@Jiamin Xiao,Xiaojing Tang,Yizhou Li,Zheng Fang,Daichuan Ma,Yangzhige He,Menglong Li
#t2011
#cBMC Bioinformatics
#index3062161
#% 
#!
  
#*A Fully Automatic Gridding Method for cDNA Microarray Images.
#@Luis Rueda,Iman Rezaeian
#t2011
#cBMC Bioinformatics
#index3062102
#% 
#!
  
#*RegNetB: Predicting Relevant Regulator-Gene Relationships in Localized Prostate Tumor Samples.
#@Angel Alvarez,Peter J. Woolf
#t2011
#cBMC Bioinformatics
#index3062221
#% 
#!
  
#*Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies.
#@Paolo G. V. Martini,Davide Risso,Gabriele Sales,Chiara Romualdi,Gerolamo Lanfranchi,Stefano Cagnin
#t2011
#cBMC Bioinformatics
#index3062090
#% 
#!
  
#*Extraction of consensus protein patterns in regions containing non-proline peptide bonds and their functional assessment.
#@Costas P. Exarchos,Themis P. Exarchos,Georgios Rigas,Costas Papaloukas,Dimitrios I. Fotiadis
#t2011
#cBMC Bioinformatics
#index3062162
#% 
#!
  
#*The Biomedical Discourse Relation Bank.
#@Rashmi Prasad,Susan McRoy,Nadya Frid,Aravind K. Joshi,Hong Yu
#t2011
#cBMC Bioinformatics
#index3062074
#% 
#!
  
#*A theoretical entropy score as a single value to express inhibitor selectivity.
#@Joost C. M. Uitdehaag,Guido J. R. Zaman
#t2011
#cBMC Bioinformatics
#index3062083
#% 
#!
  
#*The PathOlogist: An Automated Tool for Pathway-Centric Analysis.
#@Sharon I. Greenblum,Sol Efroni,Carl F. Schaefer,Kenneth H. Buetow
#t2011
#cBMC Bioinformatics
#index3062134
#% 
#!
  
#*SuiteMSA: Visual Tools for Multiple Sequence Alignment Comparison and Molecular Sequence Simulation.
#@Catherine L. Anderson,Cory L. Strope,Etsuko N. Moriyama
#t2011
#cBMC Bioinformatics
#index3062202
#% 
#!
  
#*Inference of Chromosome-Specific Copy Numbers Using Population Haplotypes.
#@Yao-Ting Huang,Min-Han Wu
#t2011
#cBMC Bioinformatics
#index3062171
#% 
#!
  
#*MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences.
#@Yonggan Wu,Bo Wei,Haizhou Liu,Tianxian Li,Simon Rayner
#t2011
#cBMC Bioinformatics
#index3062111
#% 
#!
  
#*MotifClick: prediction of cis-regulatory binding sites via merging cliques.
#@Shaoqiang Zhang,Shan Li,Meng Niu,Phuc T. Pham,Zhengchang Su
#t2011
#cBMC Bioinformatics
#index3062220
#% 
#!
  
#*Fusion of metabolomics and proteomics data for biomarkers discovery: case study on the experimental autoimmune encephalomyelitis.
#@Lionel Blanchet,Agnieszka Smolinska,Amos Attali,Marcel P. Stoop,Kirsten A. M. Ampt,Hans van Aken,Ernst Suidgeest,Tinka Tuinstra,Sybren S. Wijmenga,Theo Luider,Lutgarde M. C. Buydens
#t2011
#cBMC Bioinformatics
#index3062233
#% 
#!
  
#*Evaluating methods for ranking differentially expressed genes applied to MicroArray Quality Control data.
#@Koji Kadota,Kentaro Shimizu
#t2011
#cBMC Bioinformatics
#index3062208
#% 
#!
  
#*To aggregate or not to aggregate high-dimensional classifiers.
#@Cheng-Jian Xu,Huub C. J. Hoefsloot,Age K. Smilde
#t2011
#cBMC Bioinformatics
#index3062156
#% 
#!
  
#*Elastic SCAD as a novel penalization method for SVM classification tasks in high-dimensional data.
#@Natalia Becker,Grischa Toedt,Peter Lichter,Axel Benner
#t2011
#cBMC Bioinformatics
#index3062160
#% 
#!
  
#*Conotoxin Protein Classification Using Free Scores of Words and Support Vector Machines.
#@Nazar Zaki,Stefan Wolfsheimer,Grégory Nuel,Sawsan Khuri
#t2011
#cBMC Bioinformatics
#index3062180
#% 
#!
  
#*TreeRipper web application: towards a fully automated optical tree recognition software.
#@Joseph Hughes
#t2011
#cBMC Bioinformatics
#index3062120
#% 
#!
  
#*A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping.
#@Manuel Holtgrewe,Anne-Katrin Emde,David Weese,Knut Reinert
#t2011
#cBMC Bioinformatics
#index3062175
#% 
#!
  
#*Gebiss: An ImageJ Plugin for the Specification of Ground Truth and the Performance Evaluation of 3D Segmentation Algorithms.
#@Janos Kriston-Vizi,Ng Wee Thong,Cheok Leong Poh,Kwo Chia Yee,Joan Sim Poh Ling,Rachel Kraut,Martin Wasser
#t2011
#cBMC Bioinformatics
#index3062238
#% 
#!
  
#*HMM-FRAME: accurate protein domain classification for metagenomic sequences in the presence of frameshift errors.
#@Yuan Zhang,Yanni Sun
#t2011
#cBMC Bioinformatics
#index3062194
#% 
#!
  
#*Querying large read collections in main memory: a versatile data structure.
#@Nicolas Philippe,Mikaël Salson,Thierry Lecroq,Martine Léonard,Therese Commes,Eric Rivals
#t2011
#cBMC Bioinformatics
#index3062234
#% 
#!
  
#*Fast Empirical Bayesian LASSO for Multiple Quantitative Trait Locus Mapping.
#@Xiaodong Cai,Anhui Huang,Shizhong Xu
#t2011
#cBMC Bioinformatics
#index3062133
#% 
#!
  
#*Was the Scanner Calibration Slide Used for Its Intended Purpose?
#@Shannon Zhang,Yaping Zong
#t2011
#cBMC Bioinformatics
#index3062105
#% 
#!
  
#*MI-GWAS: a SAS platform for the analysis of inherited and maternal genetic effects in genome-wide association studies using log-linear models.
#@A. j. Agopian,Laura E. Mitchell
#t2011
#cBMC Bioinformatics
#index3062110
#% 
#!
  
#*Determinants of Antigenicity and Specificity in immune response for Protein Sequences.
#@Yulong Wang,Wenjun Wu,Nicolas N. Negre,Kevin P. White,Cheng Li,Parantu K. Shah
#t2011
#cBMC Bioinformatics
#index3062224
#% 
#!
  
#*A Formal MIM Specification and Tools for the Common Exchange of MIM Diagrams: an XML-Based Format, an API, and a Validation Method.
#@Augustin Luna,Evrim I. Karac,Margot Sunshine,Lucas Chang,Ruth Nussinov,Mirit I. Aladjem,Kurt W. Kohn
#t2011
#cBMC Bioinformatics
#index3062163
#% 
#!
  
#*Outer membrane proteins can be simply identified using secondary structure element alignment.
#@Ren-Xiang Yan,Zhen Chen,Ziding Zhang
#t2011
#cBMC Bioinformatics
#index3062068
#% 
#!
  
#*ZFN-Site searches genomes for zinc finger nuclease target sites and off-target sites.
#@Thomas J. Cradick,Giovanna Ambrosini,Christian Iseli,Philipp Bucher,Anton P. McCaffrey
#t2011
#cBMC Bioinformatics
#index3062149
#% 
#!
  
#*Discovering Time-Lagged Rules from Microarray Data using Gene Profile Classifiers.
#@Cristian Andrés Gallo,Jessica Andrea Carballido,Ignacio Ponzoni
#t2011
#cBMC Bioinformatics
#index3062094
#% 
#!
  
#*Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis.
#@Claudio Borile,Mathieu Labarre,Silvio Franz,Christophe Sola,Guislaine Refregier
#t2011
#cBMC Bioinformatics
#index3062218
#% 
#!
  
#*STSE: Spatio-Temporal Simulation Environment Dedicated to Biology.
#@Szymon Stoma,Martina Frohlich,Susanne Gerber,Edda Klipp
#t2011
#cBMC Bioinformatics
#index3062121
#% 
#!
  
#*Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps.
#@Domenico Fraccalvieri,Alessandro Pandini,Fabio Stella,Laura Bonati
#t2011
#cBMC Bioinformatics
#index3062135
#% 
#!
  
#*Smith-Waterman Peak Alignment for Comprehensive Two-dimensional Gas Chromatography Mass Spectrometry.
#@Seongho Kim,Imhoi Koo,Aiqin Fang,Xiang Zhang
#t2011
#cBMC Bioinformatics
#index3062235
#% 
#!
  
#*DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI.
#@Yongchao Liu,Bertil Schmidt,Douglas L. Maskell
#t2011
#cBMC Bioinformatics
#index3062077
#% 
#!
  
#*MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries.
#@Wen Han Chen,Ping Ping Sun,Yang Lu,William W. Guo,Yan Xin Huang,Zhi Qiang Ma
#t2011
#cBMC Bioinformatics
#index3062183
#% 
#!
  
#*Fast network centrality analysis using GPUs.
#@Zhiao Shi,Bing Zhang
#t2011
#cBMC Bioinformatics
#index3062159
#% 
#!
  
#*Stereochemical errors and their implications to molecular dynamics simulations.
#@Eduard Schreiner,Leonardo G. Trabuco,Peter L. Freddolino,Klaus Schulten
#t2011
#cBMC Bioinformatics
#index3062173
#% 
#!
  
#*Noise reduction in protein-protein interaction graphs by the implementation of a novel weighting scheme.
#@George D. Kritikos,Charalampos N. Moschopoulos,Michalis Vazirgiannis,Sophia Kossida
#t2011
#cBMC Bioinformatics
#index3062225
#% 
#!
  
#*Qxpak.5: Old mixed model solutions for new genomics problems.
#@Miguel Pérez-Enciso,Ignacy Misztal
#t2011
#cBMC Bioinformatics
#index3062204
#% 
#!
  
#*PoPMuSiC 2.1 : a web server for the estimation of protein stability changes upon mutation and sequence optimality.
#@Yves Dehouck,Jean Marc Kwasigroch,Dimitri Gilis,Marianne Rooman
#t2011
#cBMC Bioinformatics
#index3062164
#% 
#!
  
#*Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform.
#@Jeanette E. Eckel-Passow,Elizabeth J. Atkinson,Sooraj Maharjan,Sharon L. R. Kardia,Mariza de Andrade
#t2011
#cBMC Bioinformatics
#index3062211
#% 
#!
  
#*Using context to improve protein domain identification.
#@Alejandro Ochoa,Manuel Llinás,Mona Singh
#t2011
#cBMC Bioinformatics
#index3062081
#% 
#!
  
#*CAPL: an efficient association software package using family and case-control data and accounting for population stratification.
#@Ren-Hua Chung,Michael A. Schmidt,Eden R. Martin
#t2011
#cBMC Bioinformatics
#index3062170
#% 
#!
  
#*A Simple Approach to Ranking Differentially Expressed Gene Expression Time Courses through Gaussian Process Regression.
#@Alfredo A. Kalaitzis,Neil D. Lawrence
#t2011
#cBMC Bioinformatics
#index3062195
#% 
#!
  
#*A Beta-Mixture Model for Dimensionality Reduction, Sample Classification and Analysis.
#@Kirsti Laurila,Bodil Oster,Claus L. Andersen,Philippe Lamy,Torben F. Ørntoft,Olli Yli-Harja,Carsten Wiuf
#t2011
#cBMC Bioinformatics
#index3062200
#% 
#!
  
#*FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins.
#@Daniel B. Roche,Stuart J. Tetchner,Liam J. McGuffin
#t2011
#cBMC Bioinformatics
#index3062146
#% 
#!
  
#*Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation.
#@Torbjørn Rognes
#t2011
#cBMC Bioinformatics
#index3062210
#% 
#!
  
#*Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data.
#@Ewa Szczurek,Florian Markowetz,Irit Gat-Viks,Przemyslaw Biecek,Jerzy Tiuryn,Martin Vingron
#t2011
#cBMC Bioinformatics
#index3062241
#% 
#!
  
#*Properties of Metabolic Graphs: Biological Organization or Representation Artifacts?
#@Wanding Zhou,Luay Nakhleh
#t2011
#cBMC Bioinformatics
#index3062118
#% 
#!
  
#*An analysis of single amino acid repeats as use case for application specific background models.
#@Pawel P. Labaj,Peter Sykacek,David P. Kreil
#t2011
#cBMC Bioinformatics
#index3062177
#% 
#!
  
#*A Network of SCOP Hidden Markov Models and Its Analysis.
#@Liqing Zhang,Layne T. Watson,Lenwood S. Heath
#t2011
#cBMC Bioinformatics
#index3062182
#% 
#!
  
#*Dissecting protein loops with a statistical scalpel suggests a functional implication of some structural motifs.
#@Leslie Regad,Juliette Martin,Anne-Claude Camproux
#t2011
#cBMC Bioinformatics
#index3062219
#% 
#!
  
#*In-silico prediction of disorder content using hybrid sequence representation.
#@Marcin J. Mizianty,Tuo Zhang,Bin Xue,Yaoqi Zhou,A. Keith Dunker,Vladimir N. Uversky,Lukasz A. Kurgan
#t2011
#cBMC Bioinformatics
#index3062222
#% 
#!
  
#*DAS Writeback: A Collaborative Annotation System.
#@Gustavo A. Salazar,Rafael C. Jimenez,Alexander García Castro,Henning Hermjakob,Nicola J. Mulder,Edwin Blake
#t2011
#cBMC Bioinformatics
#index3062158
#% 
#!
  
#*Predicting drug side-effect profiles: a chemical fragment-based approach.
#@Edouard Pauwels,Véronique Stoven,Yoshihiro Yamanishi
#t2011
#cBMC Bioinformatics
#index3062136
#% 
#!
  
#*Toward an interactive article: integrating journals and biological databases.
#@Arun Rangarajan,Tim Schedl,Karen Yook,Juancarlos Chan,Stephen Haenel,Lolly Otis,Sharon Faelten,Tracey DePellegrin-Connelly,Ruth Isaacson,Marek S. Skrzypek,J. Michael Cherry,Paul W. Sternberg,Hans-Michael Müller
#t2011
#cBMC Bioinformatics
#index3062172
#% 
#!
  
#*GC/MS Based Metabolomics: Development of a Data Mining System for Metabolite Identification by using Soft Independent Modeling of Class Analogy (SIMCA).
#@Hiroshi Tsugawa,Yuki Tsujimot,Masanori Arita,Takeshi Bamba,Eiichiro Fukusaki
#t2011
#cBMC Bioinformatics
#index3062131
#% 
#!
  
#*TurboFold: Iterative probabilistic estimation of secondary structures for multiple RNA sequences.
#@Arif Ozgun Harmanci,Gaurav Sharma,David H. Mathews
#t2011
#cBMC Bioinformatics
#index3062092
#% 
#!
  
#*RAPSearch: a Fast Protein Similarity Search Tool for Short Reads.
#@Yuzhen Ye,Jeong-Hyeon Choi,Haixu Tang
#t2011
#cBMC Bioinformatics
#index3062147
#% 
#!
  
#*Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities.
#@Yao Fu,Laura R. Jarboe,Julie A. Dickerson
#t2011
#cBMC Bioinformatics
#index3062231
#% 
#!
  
#*Sparse PLS Discriminant Analysis: biologically relevant feature selection and graphical displays for multiclass problems.
#@Kim-Anh Lê Cao,Simon Boitard,Philippe Besse
#t2011
#cBMC Bioinformatics
#index3062236
#% 
#!
  
#*Mutagenesis Objective Search and Selection Tool (MOSST): an algorithm to predict structure-function related mutations in proteins.
#@Alvaro Olivera-Nappa,Barbara A. Andrews,Juan A. Asenjo
#t2011
#cBMC Bioinformatics
#index3062096
#% 
#!
  
#*The Proteogenomic Mapping Tool.
#@William S. Sanders,Nan Wang,Susan M. Bridges,Brandon M. Malone,Yoginder S. Dandass,Fiona M. McCarthy,Bindu Nanduri,Mark L. Lawrence,Shane C. Burgess
#t2011
#cBMC Bioinformatics
#index3062113
#% 
#!
  
#*MLPAstats: An R GUI package for the integrated analysis of copy number alterations using MLPA data.
#@Alejandro Cáceres,Lluís Armengol,Sergi Villatoro,Juan R. González
#t2011
#cBMC Bioinformatics
#index3062155
#% 
#!
  
#*An Agent-Based Model to study the epidemiological and evolutionary dynamics of Influenza viruses.
#@Benjamin Roche,John M. Drake,Pejman Rohani
#t2011
#cBMC Bioinformatics
#index3062078
#% 
#!
  
#*Swiftly Computing Center Strings.
#@Franziska Hufsky,Léon Kuchenbecker,Katharina Jahn,Jens Stoye,Sebastian Böcker
#t2011
#cBMC Bioinformatics
#index3062099
#%1087057
#%888642
#%1215875
#!
  
#*Inferring functional modules of protein families with probabilistic topic models.
#@Sebastian G. A. Konietzny,Laura Dietz,Alice C. McHardy
#t2011
#cBMC Bioinformatics
#index3062154
#% 
#!
  
#*Web-Based Metabolic Network Visualization with a Zooming User Interface.
#@Mario Latendresse,Peter D. Karp
#t2011
#cBMC Bioinformatics
#index3062185
#% 
#!
  
#*FIND: A new software tool and development platform for enhanced multicolor flow analysis.
#@Shareef Dabdoub,William C. Ray,Sheryl S. Justice
#t2011
#cBMC Bioinformatics
#index3062137
#% 
#!
  
#*Errors in CGAP xProfiler and cDNA DGED: the importance of library parsing and gene selection algorithms.
#@Andrew T. Milnthorpe,Mikhail Soloviev
#t2011
#cBMC Bioinformatics
#index3062089
#% 
#!
  
#*SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects.
#@Alexis Dereeper,Stéphane Nicolas,Loic Le Cunff,Roberto Bacilieri,Agnes Doligez,Jean-Pierre Peros,Manuel Ruiz,Patrice This
#t2011
#cBMC Bioinformatics
#index3062119
#% 
#!
  
#*Genotype calling in tetraploid species from bi-allelic marker data using mixture models.
#@Roeland E. Voorrips,Gerrit Gort,Ben Vosman
#t2011
#cBMC Bioinformatics
#index3062203
#% 
#!
  
#*Proportion statistics to detect differentially expressed genes: a comparison with log-ratio statistics.
#@Tracy L. Bergemann,Jason Wilson
#t2011
#cBMC Bioinformatics
#index3062213
#% 
#!
  
#*Constructing gene regulatory networks for long term photosynthetic light acclimation in Arabidopsis thaliana.
#@Cheng-Wei Yao,Ban-Dar Hsu,Bor-Sen Chen
#t2011
#cBMC Bioinformatics
#index3129087
#% 
#!
  
#*An empirical Bayes model using a competition score for metabolite identification in gas chromatography mass spectrometry.
#@Jaesik Jeong,Xue Shi,Xiang Zhang,Seongho Kim,Changyu Shen
#t2011
#cBMC Bioinformatics
#index3129098
#% 
#!
  
#*An Integrative Approach to Ortholog Prediction for Disease-Focused and Other Functional Studies.
#@Yanhui Hu,Ian Flockhart,Arunachalam Vinayagam,Clemens Bergwitz,Bonnie Berger,Norbert Perrimon,Stephanie E. Mohr
#t2011
#cBMC Bioinformatics
#index3129083
#% 
#!
  
#*Stepwise classification of cancer samples using clinical and molecular Data.
#@Askar Obulkasim,Gerrit Meijer,Mark A. van de Wiel
#t2011
#cBMC Bioinformatics
#index3128933
#% 
#!
  
#*Hierarchical Parallelization of Gene Differential Association Analysis.
#@Mark Needham,Rui Hu,Sandhya Dwarkadas,Xing Qiu
#t2011
#cBMC Bioinformatics
#index3129062
#% 
#!
  
#*AMDORAP: Non-targeted metabolic profiling based on high-resolution LC-MS.
#@Hiroki Takahashi,Takuya Morimoto,Naotake Ogasawara,Shigehiko Kanaya
#t2011
#cBMC Bioinformatics
#index3128972
#% 
#!
  
#*Significance testing in ridge regression for genetic data.
#@Erika Cule,Paolo Vineis,Maria De Iorio
#t2011
#cBMC Bioinformatics
#index3129101
#% 
#!
  
#*Dual channel rank-based intensity weighting for quantitative co-localization of microscopy images.
#@Vasanth R. Singan,Thouis R. Jones,Kathleen M. Curran,Jeremy C. Simpson
#t2011
#cBMC Bioinformatics
#index3128948
#% 
#!
  
#*The volatile compound BinBase mass spectral database.
#@Kirsten Skogerson,Gert Wohlgemuth,Dinesh K. Barupal,Oliver Fiehn
#t2011
#cBMC Bioinformatics
#index3129105
#% 
#!
  
#*SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds.
#@Joan Teyra,Sergey A. Samsonov,Sven Schreiber,M. Teresa Pisabarro
#t2011
#cBMC Bioinformatics
#index3129001
#% 
#!
  
#*Fast MCMC Sampling for Hidden Markov Models to Determine Copy Number Variations.
#@Md Pavel Mahmud,Alexander Schliep
#t2011
#cBMC Bioinformatics
#index3129012
#% 
#!
  
#*Predicting Receptor-Ligand Pairs through Kernel Learning.
#@Ernesto Iacucci,Fabian Ojeda,Bart De Moor,Yves Moreau
#t2011
#cBMC Bioinformatics
#index3129036
#% 
#!
  
#*Prediction of protein-binding areas by small-world residue networks and application to docking.
#@Carles Pons,Fabian Glaser,Juan Fernández-Recio
#t2011
#cBMC Bioinformatics
#index3128956
#% 
#!
  
#*Quantitative characterization and analysis of the dynamic NF-kappaB response in microglia.
#@Patrick W. Sheppard,Xiaoyun Sun,John F. Emery,Rona G. Giffard,Mustafa Khammash
#t2011
#cBMC Bioinformatics
#index3129077
#% 
#!
  
#*A Bayesian model for gene family evolution.
#@Liang Liu,Lili Yu,Venugopal Kalavacharla,Zhanji Liu
#t2011
#cBMC Bioinformatics
#index3129021
#% 
#!
  
#*Efficient alpha, beta-motif Finder for Identification of Phenotype-related Functional Modules.
#@Matthew C. Schmidt,Andrea M. Rocha,Kanchana Padmanabhan,Zhengzhang Chen,Kathleen Scott,James R. Mihelcic,Nagiza F. Samatova
#t2011
#cBMC Bioinformatics
#index3128984
#% 
#!
  
#*Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements.
#@Emma J. Cooke,Richard S. Savage,Paul D. W. Kirk,Robert Darkins,David L. Wild
#t2011
#cBMC Bioinformatics
#index3129084
#% 
#!
  
#*Computable visually observed phenotype ontological framework for plants.
#@Jaturon Harnsomburana,Jason M. Green,Adrian S. Barb,Mary Schaeffer,Leszek Vincent,Chi-Ren Shyu
#t2011
#cBMC Bioinformatics
#index3129029
#% 
#!
  
#*Prediction of conformational B-cell epitopes from 3D structures by random forest with a distance-based feature.
#@Wen Zhang,Yi Xiong,Meng Zhao,Hua Zou,Xinghuo Ye,Juan Liu
#t2011
#cBMC Bioinformatics
#index3128958
#% 
#!
  
#*Microarray-based Cancer Prediction Using Single Genes.
#@Xiaosheng Wang,Richard Simon
#t2011
#cBMC Bioinformatics
#index3129040
#% 
#!
  
#*Quantitative utilization of prior biological knowledge in the Bayesian network modeling of gene expression data.
#@Shouguo Gao,Xujing Wang
#t2011
#cBMC Bioinformatics
#index3129104
#% 
#!
  
#*How the Gene Ontology Evolves.
#@Sabina Leonelli,Alexander D. Diehl,Karen R. Christie,Midori A. Harris,Jane Lomax
#t2011
#cBMC Bioinformatics
#index3129090
#% 
#!
  
#*DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference.
#@Yan Jiao,Katherine Lawler,Gargi S. Patel,Arnie Purushotham,Annete F. Jones,Anita Grigoriadis,Andrew Tutt,Tony Ng,Andrew E. Teschendorff
#t2011
#cBMC Bioinformatics
#index3129063
#% 
#!
  
#*NETGEM: Network Embedded Temporal GEnerative Model for gene expression data.
#@Vinay Jethava,Chiranjib Bhattacharyya,Devdatt Dubhashi,Goutham N. Vemuri
#t2011
#cBMC Bioinformatics
#index3129051
#% 
#!
  
#*Comprehensive, atomic-level characterization of structurally characterized protein-protein interactions: the PICCOLO database.
#@George R. Bickerton,Alicia P. Higueruelo,Tom L. Blundell
#t2011
#cBMC Bioinformatics
#index3129000
#% 
#!
  
#*The projection score - an evaluation criterion for variable subset selection in PCA visualization.
#@Magnus Fontes,Charlotte Soneson
#t2011
#cBMC Bioinformatics
#index3129086
#% 
#!
  
#*Methodology and software to detect viral integration site hot-spots.
#@Angela P. Presson,Namshin Kim,Xiaofei Yan,Irvin S. Y. Chen,Sanggu Kim
#t2011
#cBMC Bioinformatics
#index3128947
#% 
#!
  
#*An Active Learning Based Classification Strategy for the Minority Class Problem: Application to Histopathology Annotation.
#@Scott Doyle,James Monaco,Michael D. Feldman,John Tomaszewski,Anant Madabhushi
#t2011
#cBMC Bioinformatics
#index3128943
#% 
#!
  
#*Mulcom: a multiple comparison statistical test for microarray data in Bioconductor.
#@Claudio Isella,Tommaso Renzulli,Davide Corà,Enzo Medico
#t2011
#cBMC Bioinformatics
#index3129050
#% 
#!
  
#*miRTar: an integrated system for identifying miRNA-target interactions in Human.
#@Justin Bo-Kai Hsu,Chih-Min Chiu,Sheng-Da Hsu,Wei-Yun Huang,Chia-Hung Chien,Tzong-Yi Lee,Hsien-Da Huang
#t2011
#cBMC Bioinformatics
#index3128934
#% 
#!
  
#*Dimension Reduction with Gene Expression Data Using Targeted Variable Importance Measurement.
#@Hui Wang,Mark J. van der Laan
#t2011
#cBMC Bioinformatics
#index3128962
#% 
#!
  
#*FAAST: Flow-space Assisted Alignment Search Tool.
#@Fredrik Lysholm,Björn Andersson,Bengt Persson
#t2011
#cBMC Bioinformatics
#index3129028
#% 
#!
  
#*Classification of microarrays; synergistic effects between normalization, gene selection and machine learning.
#@Jenny Önskog,Eva Freyhult,Mattias Landfors,Patrik Rydén,Torgeir R. Hvidsten
#t2011
#cBMC Bioinformatics
#index3129100
#% 
#!
  
#*GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data.
#@Marie E. Fahey,Melanie J. Bennett,Cathal Mahon,Stefanie Jaeger,Lars Pache,Dhiraj Kumar,Alex Shapiro,Kanury Rao,Sumit K. Chanda,Charles S. Craik,Alan D. Frankel,Nevan J. Krogan
#t2011
#cBMC Bioinformatics
#index3128961
#% 
#!
  
#*A motif-independent metric for DNA sequence specificity.
#@Luca Pinello,Giosuè Lo Bosco,Bret Hanlon,Guo-Cheng Yuan
#t2011
#cBMC Bioinformatics
#index3129022
#% 
#!
  
#*IsoformEx: Isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data.
#@Hyunsoo Kim,Yingtao Bi,Sharmistha Pal,Ravi Gupta,Ramana V. Davuluri
#t2011
#cBMC Bioinformatics
#index3129041
#% 
#!
  
#*Integrating GPCR-specific information with full text articles.
#@Bas Vroling,David Thorne,Philip McDermott,Teresa K. Attwood,Gert Vriend,Steve Pettifer
#t2011
#cBMC Bioinformatics
#index3129013
#% 
#!
  
#*Discovering biological connections between experimental conditions based on common patterns of differential gene expression.
#@Adam C. Gower,Avrum Spira,Marc E. Lenburg
#t2011
#cBMC Bioinformatics
#index3129045
#% 
#!
  
#*SIGNATURE: A workbench for gene expression signature analysis.
#@Jeffrey T. Chang,Michael L. Gatza,Joseph E. Lucas,William T. Barry,Peyton Vaughn,Joseph Nevins
#t2011
#cBMC Bioinformatics
#index3129037
#% 
#!
  
#*An integrated ChIP-seq analysis platform with customizable workflows.
#@Eugenia G. Giannopoulou,Olivier Elemento
#t2011
#cBMC Bioinformatics
#index3129085
#% 
#!
  
#*Techniques for analysing pattern formation in populations of stem cells and their progeny.
#@John A. Fozard,Glen R. Kirkham,Lee D. K. Buttery,John R. King,Oliver E. Jensen,Helen M. Byrne
#t2011
#cBMC Bioinformatics
#index3128971
#% 
#!
  
#*Analyzing 2D Gel Images using a Two-Component Empirical Bayes Model.
#@Feng Li,Françoise Seillier-Moiseiwitsch
#t2011
#cBMC Bioinformatics
#index3129006
#% 
#!
  
#*SegMine workflows for semantic microarray data analysis in Orange4WS.
#@Vid Podpecan,Nada Lavrac,Igor Mozetic,Petra Kralj Novak,Igor Trajkovski,Laura Langohr,Kimmo Kulovesi,Hannu Toivonen,Marko Petek,Helena Motaln,Kristina Gruden
#t2011
#cBMC Bioinformatics
#index3129052
#% 
#!
  
#*Automated NMR relaxation dispersion data analysis using NESSY.
#@Michael Bieri,Paul R. Gooley
#t2011
#cBMC Bioinformatics
#index3128953
#% 
#!
  
#*Identification of exonic regions in DNA sequences using cross-correlation and noise suppression by discrete wavelet transform.
#@Omid Abbasi,Ali Rostami,Ghader Karimian
#t2011
#cBMC Bioinformatics
#index3129027
#% 
#!
  
#*PlantPhos: using Maximal Dependence Decomposition to Identify Plant Phosphorylation Sites with Substrate Site Specificity.
#@Tzong-Yi Lee,Neil Arvin Bretaña,Cheng-Tsung Lu
#t2011
#cBMC Bioinformatics
#index3129091
#% 
#!
  
#*Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection.
#@Rudesh D. Toofanny,Andrew M. Simms,David A. C. Beck,Valerie Daggett
#t2011
#cBMC Bioinformatics
#index3128999
#% 
#!
  
#*The Representation of Protein Complexes in the Protein Ontology (PRO).
#@Carol J. Bult,Harold J. Drabkin,Alexei V. Evsikov,Darren A. Natale,Cecilia N. Arighi,Natalia V. Roberts,Alan Ruttenberg,Peter D'Eustachio,Barry Smith,Judith A. Blake,Cathy H. Wu
#t2011
#cBMC Bioinformatics
#index3129034
#% 
#!
  
#*A novel method to compare protein structures using local descriptors.
#@Pawel Daniluk,Bogdan Lesyng
#t2011
#cBMC Bioinformatics
#index3129096
#% 
#!
  
#*Multilocus association mapping using generalized ridge logistic regression.
#@Zhe Liu,Yuanyuan Shen,Jurg Ott
#t2011
#cBMC Bioinformatics
#index3128927
#% 
#!
  
#*Multi-target QSAR Modelling in the Analysis and Design of HIV-HCV Co-Inhibitors : An In-silico Study.
#@Qi Liu,Han Zhou,Lin Liu,Xi Chen,Ruixin Zhu,Zhi-Wei Cao
#t2011
#cBMC Bioinformatics
#index3129103
#% 
#!
  
#*An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data.
#@Trung N. Vu,Dirk Valkenborg,Koen Smets,Kim A. Verwaest,Roger Dommisse,Filip Lemière,Alain Verschoren,Bart Goethals,Kris Laukens
#t2011
#cBMC Bioinformatics
#index3129076
#% 
#!
  
#*Bayesian semi-supervised classification of bacterial samples using MLST databases.
#@Lu Cheng,Thomas R. Connor,David M. Aanensen,Brian G. Spratt,Jukka Corander
#t2011
#cBMC Bioinformatics
#index3129010
#% 
#!
  
#*Mining for Genotype-Phenotype Relations in Saccharomyces using Partial Least Squares.
#@Tahir Mehmood,Harald Martens,Solve Saebo,Jonas Warringer,Lars Snipen
#t2011
#cBMC Bioinformatics
#index3128992
#% 
#!
  
#*pcrEfficiency: a Web tool for PCR amplification efficiency prediction.
#@Izaskun Mallona,Julia Weiss,Marcos Egea-Cortines
#t2011
#cBMC Bioinformatics
#index3129089
#% 
#!
  
#*Application of an efficient Bayesian discretization method to biomedical data.
#@Jonathan L. Lustgarten,Shyam Visweswaran,Vanathi Gopalakrishnan,Gregory F. Cooper
#t2011
#cBMC Bioinformatics
#index3129017
#% 
#!
  
#*A systems approach to identifying correlated gene targets for the loss of colour pigmentation in plants.
#@Sangaalofa T. Clark,Wynand S. Verwoerd
#t2011
#cBMC Bioinformatics
#index3128942
#% 
#!
  
#*Genome-wide algorithm for detecting CNV associations with diseases.
#@Yaji Xu,Bo Peng,Yunxin Fu,Christopher I. Amos
#t2011
#cBMC Bioinformatics
#index3128946
#% 
#!
  
#*iCTNet: A Cytoscape plugin to produce and analyze integrative complex traits networks.
#@Lili Wang,Pouya Khankhanian,Sergio Baranzini,Parvin Mousavi
#t2011
#cBMC Bioinformatics
#index3128963
#% 
#!
  
#*Selective Phenotyping, Entropy Reduction and the Mastermind Game.
#@Julien Gagneur,Markus C. Elze,Achim Tresch
#t2011
#cBMC Bioinformatics
#index3128928
#% 
#!
  
#*PChopper: High Throughput Peptide Prediction For MRM/SRM Transition Design.
#@Vackar Afzal,Jeffrey T.-J. Huang,Abdel Atrih,Daniel J. Crowther
#t2011
#cBMC Bioinformatics
#index3129023
#% 
#!
  
#*Classifying short genomic fragments from novel lineages using composition and homology.
#@Donovan H. Parks,Norman J. MacDonald,Robert G. Beiko
#t2011
#cBMC Bioinformatics
#index3128981
#% 
#!
  
#*Development of an automatic Classification Scheme for Disease-related Enzyme Information.
#@Carola Söhngen,Antje Chang,Dietmar Schomburg
#t2011
#cBMC Bioinformatics
#index3129016
#% 
#!
  
#*DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking.
#@Irina Tuszynska,Janusz M. Bujnicki
#t2011
#cBMC Bioinformatics
#index3128970
#% 
#!
  
#*Interactive metagenomic visualization in a Web browser.
#@Brian D. Ondov,Nicholas H. Bergman,Adam M. Phillippy
#t2011
#cBMC Bioinformatics
#index3128998
#% 
#!
  
#*NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins.
#@Michelle S. Scott,Peter V. Troshin,Geoffrey J. Barton
#t2011
#cBMC Bioinformatics
#index3128988
#% 
#!
  
#*Deterministic and stochastic population-level simulations of an artificial lac operon genetic network.
#@Michail Stamatakis,Kyriacos Zygourakis
#t2011
#cBMC Bioinformatics
#index3128935
#% 
#!
  
#*SCFIA: A Statistical Corresponding Feature Identification Algorithm for LC/MS.
#@Jian Cui,Xuepo Ma,Long Chen,Jianqiu Zhang
#t2011
#cBMC Bioinformatics
#index3128954
#% 
#!
  
#*MolabIS - An Integrated Information System for Storing and Managing Molecular Genetics Data.
#@Cong V. C. Truong,Linn F. Groeneveld,Burkhard Morgenstern,Eildert Groeneveld
#t2011
#cBMC Bioinformatics
#index3129044
#% 
#!
  
#*phenosim - A software to simulate phenotypes for testing in genome-wide association studies.
#@Torsten Gunther,Inka Gawenda,Karl J. Schmid
#t2011
#cBMC Bioinformatics
#index3129026
#% 
#!
  
#*Expression cartography of human tissues using self organizing maps.
#@Henry Wirth,Markus Loffler,Martin von Bergen,Hans Binder
#t2011
#cBMC Bioinformatics
#index3128987
#% 
#!
  
#*Improving Probe Set Selection for Microbial Community Analysis by Leveraging Taxonomic Information of Training Sequences.
#@Paul M. Ruegger,Gianluca Della Vedova,Tao Jiang,James Borneman
#t2011
#cBMC Bioinformatics
#index3129035
#% 
#!
  
#*MAVEN: Motion Analysis and Visualization of Elastic Networks and Structural Ensembles.
#@Michael T. Zimmermann,Andrzej Kloczkowski,Robert L. Jernigan
#t2011
#cBMC Bioinformatics
#index3129011
#% 
#!
  
#*Gene set analysis for longitudinal gene expression data.
#@Ke Zhang,Haiyan Wang,Arne C. Bathke,Solomon W. Harrar,Hans-Peter Piepho,Youping Deng
#t2011
#cBMC Bioinformatics
#index3128964
#% 
#!
  
#*AIGO: Towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations.
#@Michael Defoin-Platel,Matthew Morritt Hindle,Artem Lysenko,Stephen J. Powers,Dimah Z. Habash,Christopher J. Rawlings,Mansoor Saqi
#t2011
#cBMC Bioinformatics
#index3128982
#% 
#!
  
#*Haplo2Ped: a tool using haplotypes as markers for linkage analysis.
#@Feng Cheng,Xianglong Zhang,Yinan Zhang,Chaohua Li,Changqing Zeng
#t2011
#cBMC Bioinformatics
#index3129007
#% 
#!
  
#*Characterizing Genetic Interactions in Human Disease Association Studies Using Statistical Epistasis Networks.
#@Ting Hu,Nicholas A. Sinnott-Armstrong,Jeff Kiralis,Angeline S. Andrew,Margaret R. Karagas,Jason H. Moore
#t2011
#cBMC Bioinformatics
#index3129053
#% 
#!
  
#*clusterMaker: a multi-algorithm clustering plugin for Cytoscape.
#@John H. Morris,Leonard Apeltsin,Aaron M. Newman,Jan Baumbach,Tobias Wittkop,Gang Su,Gary D. Bader,Thomas E. Ferrin
#t2011
#cBMC Bioinformatics
#index3129061
#% 
#!
  
#*Implementing a genomic data management system using iRODS in Wellcome Trust Sanger Institute.
#@Gen-Tao Chiang,Peter Clapham,Guoying Qi,Kevin Sale,Guy Coates
#t2011
#cBMC Bioinformatics
#index3128993
#% 
#!
  
#*Visualizing Meta-Features in Proteomic Maps.
#@Eugenia G. Giannopoulou,George Lepouras,Elias S. Manolakos
#t2011
#cBMC Bioinformatics
#index3129106
#% 
#!
  
#*Improving the performance of beta-turn prediction using predicted shape strings and a two-layer support vector machine model.
#@Zehui Tang,Tonghua Li,Rida Liu,Wenwei Xiong,Jiangming Sun,Yaojuan Zhu,Guanyan Chen
#t2011
#cBMC Bioinformatics
#index3129079
#% 
#!
  
#*rapmad: Robust Analysis of Peptide Microarray Data.
#@Bernhard Y. Renard,Martin Lower,Yvonne Kuhne,Ulf Reimer,Andree Rothermel,Ozlem Tureci,John C. Castle,Ugur Sahin
#t2011
#cBMC Bioinformatics
#index3129088
#% 
#!
  
#*Consistent Differential Expression Pattern (CDEP) on microarray to identify genes related to metastatic behavior.
#@Lam C. Tsoi,Tingting Qin,Elizabeth H. Slate,W. Jim Zheng
#t2011
#cBMC Bioinformatics
#index3129078
#% 
#!
  
#*Differential C3NET reveals disease networks of direct physical interactions.
#@Gokmen Altay,Mohammad Asim,Florian Markowetz,David E. Neal
#t2011
#cBMC Bioinformatics
#index3128941
#% 
#!
  
#*DOSim: An R package for similarity between diseases based on Disease Ontology.
#@Jiang Li,Bingsheng Gong,Xi Chen,Tao Liu,Chao Wu,Fan Zhang,Chunquan Li,Xiang Li,Shaoqi Rao,Xia Li
#t2011
#cBMC Bioinformatics
#index3128959
#% 
#!
  
#*Detection of Fused Genes in Eukaryotic Genomes using Gene deFuser: Analysis of the genome.
#@Hannah M. W. Salim,Amanda M. Koire,Nicholas A. Stover,Andre R. O. Cavalcanti
#t2011
#cBMC Bioinformatics
#index3128936
#% 
#!
  
#*Improving pan-genome annotation using whole genome multiple alignment.
#@Samuel V. Angiuoli,Julie C. Dunning Hotopp,Steven L. Salzberg,Herve Tettelin
#t2011
#cBMC Bioinformatics
#index3129107
#% 
#!
  
#*BLProt: Prediction of bioluminescent proteins based on Support Vector Machine and ReliefF feature selection.
#@Krishna Kumar Kandaswamy,Ganesan Pugalenthi,Mehrnaz Khodam Hazrati,Kai-Uwe Kalies,Thomas Martinetz
#t2011
#cBMC Bioinformatics
#index3128925
#% 
#!
  
#*EPEPT: A web service for enhanced P-value estimation in permutation tests.
#@Theo A. Knijnenburg,Jake Lin,Hector Rovira,John Boyle,Ilya Shmulevich
#t2011
#cBMC Bioinformatics
#index3129008
#% 
#!
  
#*Strategies for aggregating gene expression data: The collapseRows R function.
#@Jeremy A. Miller,Chaochao Cai,Peter Langfelder,Daniel H. Geschwind,Sunil M. Kurian,Daniel R. Salomon,Steve Horvath
#t2011
#cBMC Bioinformatics
#index3129004
#% 
#!
  
#*ProDiGe: PRioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples.
#@Fantine Mordelet,Jean-Philippe Vert
#t2011
#cBMC Bioinformatics
#index3128930
#% 
#!
  
#*BioIMAX: A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data.
#@Christian Loyek,Nasir M. Rajpoot,Michael Khan,Tim W. Nattkemper
#t2011
#cBMC Bioinformatics
#index3128990
#% 
#!
  
#*Prototype Semantic Infrastructure for Automated Small Molecule Classification and Annotation in Lipidomics.
#@Leonid L. Chepelev,Alexandre Riazanov,Alexandre Kouznetsov,Hong Sang Low,Michel Dumontier,Christopher J. O. Baker
#t2011
#cBMC Bioinformatics
#index3129060
#% 
#!
  
#*A novel method to identify cooperative functional modules: study of module coordination in the cell cycle.
#@Jeh-Ting Hsu,Chien Hua Peng,Wen-Ping Hsieh,Chung-Yu Lan,Chuan Yi Tang
#t2011
#cBMC Bioinformatics
#index3128945
#% 
#!
  
#*Detection of Lineage-Specific Evolutionary Changes among Primate Species.
#@Mihaela Pertea,Geo Pertea,Steven L. Salzberg
#t2011
#cBMC Bioinformatics
#index3128969
#% 
#!
  
#*GOmotif: A web server for investigating the biological role of protein sequence motifs.
#@Franklin Bristow,Runtao He,Gary H. Van Domselaar
#t2011
#cBMC Bioinformatics
#index3128997
#% 
#!
  
#*iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex.
#@Sabry Razick,Antonio Mora,Katerina Michalickova,Paul Boddie,Ian M. Donaldson
#t2011
#cBMC Bioinformatics
#index3128937
#% 
#!
  
#*Bio: : Homology: : InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping.
#@Giuseppe Gallone,T. Ian Simpson,J. Douglas Armstrong,Andrew P. Jarman
#t2011
#cBMC Bioinformatics
#index3129102
#% 
#!
  
#*Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction.
#@Stefan Janssen,Christian Schudoma,Gerhard Steger,Robert Giegerich
#t2011
#cBMC Bioinformatics
#index3129108
#% 
#!
  
#*Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series.
#@Yuan Yuan,Yi-Ping Phoebe Chen,Shengyu Ni,Augix Guohua Xu,Lin Tang,Martin Vingron,Mehmet Somel,Philipp Khaitovich
#t2011
#cBMC Bioinformatics
#index3129018
#% 
#!
  
#*Knowledge Engineering Tools for Reasoning with Scientific Observations and Interpretations: a Neural Connectivity Use Case.
#@Thomas A. Russ,Cartic Ramakrishnan,Eduard H. Hovy,Mihail Bota,Gully A. P. C. Burns
#t2011
#cBMC Bioinformatics
#index3129073
#% 
#!
  
#*Modeling measurement error in tumor characterization studies.
#@Cyril Rakovski,Daniel J. Weisenberger,Paul Marjoram,Peter W. Laird,Kimberly D. Siegmund
#t2011
#cBMC Bioinformatics
#index3128979
#% 
#!
  
#*LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates.
#@Stewart E. Moughon,Ram Samudrala
#t2011
#cBMC Bioinformatics
#index3129059
#% 
#!
  
#*Meta-analytic approach to the accurate prediction of secreted virulence effectors in Gram-negative bacteria.
#@Yoshiharu Sato,Akiko Takaya,Tomoko Yamamoto
#t2011
#cBMC Bioinformatics
#index3128951
#% 
#!
  
#*Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response.
#@Qiyuan Li,Aron C. Eklund,Nicolai J. Birkbak,Christine Desmedt,Benjamin Haibe-Kains,Christos Sotiriou,W. Fraser Symmans,Lajos Pusztai,Søren Brunak,Andrea L. Richardson,Zoltan Szallasi
#t2011
#cBMC Bioinformatics
#index3129069
#% 
#!
  
#*A regression system for estimation of errors introduced by confocal imaging into gene expression data in situ.
#@Ekaterina Myasnikova,Svetlana Surkova,Grigory Stein,Andrei Pisarev,Maria Samsonova
#t2011
#cBMC Bioinformatics
#index3128965
#% 
#!
  
#*Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi Diagrams.
#@Joan Segura,Pamela F. Jones,Narcis Fernandez-Fuentes
#t2011
#cBMC Bioinformatics
#index3129080
#% 
#!
  
#*PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries.
#@Adriano Barbosa-Silva,Jean-Fred Fontaine,Elisa R. Donnard,Fernanda Stussi,J. Miguel Ortega,Miguel A. Andrade-Navarro
#t2011
#cBMC Bioinformatics
#index3128940
#% 
#!
  
#*SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data.
#@Xutao Deng
#t2011
#cBMC Bioinformatics
#index3129066
#% 
#!
  
#*Network-based group variable selection for detecting expression quantitative trait loci (eQTL).
#@Weichen Wang,Xuegong Zhang
#t2011
#cBMC Bioinformatics
#index3129094
#% 
#!
  
#*BioAssay Ontology (BAO): A Semantic Description of Bioassays and High-Throughput Screening Results.
#@Ubbo Visser,Saminda Abeyruwan,Uma Vempati,Robin P. Smith,Vance P. Lemmon,Stephan C. Schürer
#t2011
#cBMC Bioinformatics
#index3129047
#% 
#!
  
#*Construct and Compare Gene Coexpression Networks with DAPfinder and DAPview.
#@Jeff Skinner,Yuri Kotliarov,Sudhir Varma,Karina L. Mine,Anatoly Yambartsev,Richard Simon,Yentram Huyen,Andrey Morgun
#t2011
#cBMC Bioinformatics
#index3128994
#% 
#!
  
#*ReadDB Provides Efficient Storage for Mapped Short Reads.
#@P. Alexander Rolfe,David K. Gifford
#t2011
#cBMC Bioinformatics
#index3128944
#% 
#!
  
#*GSV: A Web-based Genome Synteny Viewer for Customized Data.
#@Kashi Vishwanath Revanna,Chi-Chen Chiu,Ezekiel Bierschank,Qunfeng Dong
#t2011
#cBMC Bioinformatics
#index3128966
#% 
#!
  
#*Efficient counting of k-mers in DNA sequences using a Bloom Filter.
#@Páll Melsted,Jonathan K. Pritchard
#t2011
#cBMC Bioinformatics
#index3129097
#% 
#!
  
#*Exact score distribution computation for ontological similarity searches.
#@Marcel H. Schulz,Sebastian Köhler,Sebastian Bauer,Peter N. Robinson
#t2011
#cBMC Bioinformatics
#index3129054
#% 
#!
  
#*IQMNMR: Open source software using time-domain NMR data for automated identification and quantification of metabolites in batches.
#@Xu Song,Bo-Li Zhang,Hong-Min Liu,Bo-Yang Yu,Xiu-Mei Gao,Li-Yuan Kang
#t2011
#cBMC Bioinformatics
#index3128938
#% 
#!
  
#*Exploratory analysis of genomic segmentations with Segtools.
#@Orion J. Buske,Michael M. Hoffman,Nadia Ponts,Karine G. Le Roch,William Stafford Noble
#t2011
#cBMC Bioinformatics
#index3129072
#% 
#!
  
#*Studying the correlation between different word sense disambiguation methods and summarization effectiveness in biomedical texts.
#@Laura Plaza,Antonio José Jimeno-Yepes,Alberto Díaz,Alan R. Aronson
#t2011
#cBMC Bioinformatics
#index3129033
#% 
#!
  
#*Parallelized short read assembly of large genomes using de Bruijn graphs.
#@Yongchao Liu,Bertil Schmidt,Douglas L. Maskell
#t2011
#cBMC Bioinformatics
#index3129058
#% 
#!
  
#*Biblio-MetReS: A bibliometric network reconstruction application and server.
#@Anabel Usie,Hiren Karathia,Ivan Teixido,Joan Valls,Xavier Faus,Rui Alves,Francesc Solsona
#t2011
#cBMC Bioinformatics
#index3129055
#% 
#!
  
#*A mutation degree model for the identification of transcriptional regulatory elements.
#@Changqing Zhang,Jin Wang,Xu Hua,Jinggui Fang,Huaiqiu Zhu,Xiang Gao
#t2011
#cBMC Bioinformatics
#index3129046
#% 
#!
  
#*AlignHUSH : Alignment of HMMs Using Structure and Hydrophobicity information.
#@Oruganty Krishnadev,Narayanaswamy Srinivasan
#t2011
#cBMC Bioinformatics
#index3129005
#% 
#!
  
#*Toponomics method for the automated quantification of membrane protein translocation.
#@Olga Domanova,Stefan Borbe,Stefanie Muhlfeld,Martin Becker,Ralf Kubitz,Dieter Haussinger,Thomas Berlage
#t2011
#cBMC Bioinformatics
#index3129095
#% 
#!
  
#*Randomization techniques for assessing the significance of gene periodicity results.
#@Aleksi Kallio,Niko Vuokko,Markus Ojala,Niina Haiminen,Heikki Mannila
#t2011
#cBMC Bioinformatics
#index3128926
#% 
#!
  
#*Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi.
#@Elin Axelsson,Thomas Sandmann,Thomas Horn,Michael Boutros,Wolfgang Huber,Bernd Fischer
#t2011
#cBMC Bioinformatics
#index3129068
#% 
#!
  
#*Vertical Decomposition with Genetic Algorithm for Multiple Sequence Alignment.
#@Farhana Naznin,Ruhul A. Sarker,Daryl Essam
#t2011
#cBMC Bioinformatics
#index3128975
#% 
#!
  
#*Predicting protein ligand binding motions with the Conformation Explorer.
#@Samuel Flores,Mark B. Gerstein
#t2011
#cBMC Bioinformatics
#index3129081
#% 
#!
  
#*CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing.
#@Samuel V. Angiuoli,Malcolm Matalka,Aaron Gussman,Kevin Galens,Mahesh Vangala,David R. Riley,Cesar Arze,James R. White,Owen White,W. Florian Fricke
#t2011
#cBMC Bioinformatics
#index3128980
#% 
#!
  
#*Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns.
#@Jeremy Gruel,Michel LeBorgne,Nolwenn LeMeur,Nathalie Théret
#t2011
#cBMC Bioinformatics
#index3128995
#% 
#!
  
#*RNAexinv: An Extended Inverse RNA Folding from Shape and Physical Attributes to Sequences.
#@Assaf Avihoo,Alexander Churkin,Danny Barash
#t2011
#cBMC Bioinformatics
#index3129009
#% 
#!
  
#*Visual Gene Developer: a fully programmable bioinformatics software for synthetic gene optimization.
#@Sang-Kyu Jung,Karen McDonald
#t2011
#cBMC Bioinformatics
#index3128989
#% 
#!
  
#*New Words in Human Mutagenesis.
#@Alexander Y. Panchin,Sergey I. Mitrofanov,Andrei Alexeevski,Sergei A. Spirin,Yuri V. Panchin
#t2011
#cBMC Bioinformatics
#index3128978
#% 
#!
  
#*Open-Target Sparse Sensing of Biological Agents using DNA Microarray.
#@Mojdeh Mohtashemi,David K. Walburger,Matthew W. Peterson,Felicia N. Sutton,Haley B. Skaer,James C. Diggans
#t2011
#cBMC Bioinformatics
#index3128923
#% 
#!
  
#*Comparison of lists of genes based on functional profiles.
#@Miquel Salicru,Jordi Ocana,Alex Sánchez-Pla
#t2011
#cBMC Bioinformatics
#index3128957
#% 
#!
  
#*Applications of the Pipeline Environment for Visual Informatics and Genomics Computations.
#@Ivo D. Dinov,Federica Torri,Fabio Macciardi,Petros Petrosyan,Zhizhong Liu,Alen Zamanyan,Paul Eggert,Jonathan Pierce,Alex Genco,James A. Knowles,Andrew P. Clark,John D. Van Horn,Joseph Ames,Carl Kesselman,Arthur W. Toga
#t2011
#cBMC Bioinformatics
#index3128939
#% 
#!
  
#*Rigorous assessment and integration of the sequence and structure based features to predict hot spots.
#@Ruoying Chen,Wenjing Chen,Sixiao Yang,Di Wu,Yong Wang,Yingjie Tian,Yong Shi
#t2011
#cBMC Bioinformatics
#index3128974
#% 
#!
  
#*RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.
#@Bo Li,Colin N. Dewey
#t2011
#cBMC Bioinformatics
#index3129032
#% 
#!
  
#*Statistical Mutation Calling from Sequenced Overlapping DNA Pools in TILLING Experiments.
#@Victor Missirian,Luca Comai,Vladimir Filkov
#t2011
#cBMC Bioinformatics
#index3128967
#% 
#!
  
#*Cross-validated stepwise regression for identification of novel non-nucleoside reverse transcriptase inhibitor resistance associated mutations.
#@Koen Van der Borght,Elke Van Craenenbroeck,Pierre Lecocq,Margriet Van Houtte,Barbara Van Kerckhove,Lee Bacheler,Geert Verbeke,Herman van Vlijmen
#t2011
#cBMC Bioinformatics
#index3128952
#% 
#!
  
#*Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology.
#@Holger Pillmann,Klas Hatje,Florian Odronitz,Bjorn Hammesfahr,Martin Kollmar
#t2011
#cBMC Bioinformatics
#index3129067
#% 
#!
  
#*Domain architecture conservation in orthologs.
#@Kristoffer Forslund,Isabella Pekkari,Erik L. L. Sonnhammer
#t2011
#cBMC Bioinformatics
#index3128929
#% 
#!
  
#*Top Scoring Pairs for Feature Selection in Machine Learning and Applications to Cancer Outcome Prediction.
#@Ping Shi,Surajit Ray,Qifu Zhu,Mark A. Kon
#t2011
#cBMC Bioinformatics
#index3129109
#% 
#!
  
#*Improving ontologies by automatic reasoning and evaluation of logical definitions.
#@Sebastian Köhler,Sebastian Bauer,Chris Mungall,Gabriele Carletti,Cynthia L. Smith,Paul Schofield,Georgios V. Gkoutos,Peter N. Robinson
#t2011
#cBMC Bioinformatics
#index3128950
#% 
#!
  
#*Enhanced peptide quantification using spectral count clustering and cluster abundance.
#@Seungmook Lee,Min-Seok Kwon,Hyoung-Joo Lee,Young-Ki Paik,Haixu Tang,Jae K. Lee,Taesung Park
#t2011
#cBMC Bioinformatics
#index3129071
#% 
#!
  
#*A comparison of the functional modules identified from time course and static PPI network data.
#@Xiwei Tang,Jianxin Wang,Binbin Liu,Min Li,Gang Chen,Yi Pan
#t2011
#cBMC Bioinformatics
#index3129042
#% 
#!
  
#*Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation.
#@Xianwen Ren,Yong-Cui Wang,Yong Wang,Xiang-Sun Zhang,Nai-Yang Deng
#t2011
#cBMC Bioinformatics
#index3128932
#% 
#!
  
#*MAPI: towards the integrated exploitation of bioinformatics Web Services.
#@Sergio Ramírez,Johan Karlsson,Oswaldo Trelles
#t2011
#cBMC Bioinformatics
#index3128985
#% 
#!
  
#*Ranking insertion, deletion and nonsense mutations based on their effect on genetic information.
#@Amin Zia,Alan M. Moses
#t2011
#cBMC Bioinformatics
#index3129049
#% 
#!
  
#*Mitochondrial Genome Sequence Analysis: A custom bioinformatics pipeline substantially improves Affymetrix MitoChip v2.0 call rate and accuracy.
#@Hongbo M. Xie,Juan C. Perin,Theodore G. Schurr,Matthew C. Dulik,Sergey I. Zhadanov,Joseph A. Baur,Michael P. King,Emily Place,Colleen Clarke,Michael Grauer,Jonathan Schug,Avni Santani,Anthony Albano,Cecilia Kim,Vincent Procaccio,Hakon Hakonarson,Xiaowu Gai,Marni J. Falk
#t2011
#cBMC Bioinformatics
#index3129064
#% 
#!
  
#*Link-based Quantitative Methods to Identify Differentially Coexpressed Genes and Gene Pairs.
#@Hui Yu,Bao-Hong Liu,Zhi-Qiang Ye,Chun Li,Yi-Xue Li,Yuan-Yuan Li
#t2011
#cBMC Bioinformatics
#index3128960
#% 
#!
  
#*ProPhylo: Partial Phylogenetic Profiling to guide protein family construction and assignment of biological process.
#@Malay Kumar Basu,Jeremy D. Selengut,Daniel H. Haft
#t2011
#cBMC Bioinformatics
#index3129020
#% 
#!
  
#*Statistical Methods for Analyzing Immunosignatures.
#@Justin R. Brown,Phillip Stafford,Stephen A. Johnston,Valentin Dinu
#t2011
#cBMC Bioinformatics
#index3129024
#% 
#!
  
#*Reporting FDR analogous confidence intervals for the log fold change of differentially expressed genes.
#@Klaus Jung,Tim Friede,Tim Beißbarth
#t2011
#cBMC Bioinformatics
#index3128996
#% 
#!
  
#*Bias Detection and Correction in RNA-Sequencing Data.
#@Wei Zheng,Lisa M. Chung,Hongyu Zhao
#t2011
#cBMC Bioinformatics
#index3128968
#% 
#!
  
#*Phamerator: a bioinformatic tool for comparative bacteriophage genomics.
#@Steven G. Cresawn,Matt Bogel,Nathan Day,Deborah Jacobs-Sera,Roger W. Hendrix,Graham F. Hatfull
#t2011
#cBMC Bioinformatics
#index3128991
#% 
#!
  
#*Unraveling gene regulatory networks from time-resolved gene expression data - a measures comparison study.
#@Sabrina Hempel,Aneta Koseska,Zoran Nikoloski,Jürgen Kurths
#t2011
#cBMC Bioinformatics
#index3129082
#% 
#!
  
#*DNACLUST: accurate and efficient clustering of phylogenetic marker genes.
#@Mohammadreza Ghodsi,Bo Liu,Mihai Pop
#t2011
#cBMC Bioinformatics
#index3129075
#% 
#!
  
#*ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs.
#@Marijn P. A. Sanders,Wilco W. M. Fleuren,Stefan Verhoeven,Sven van den Beld,Wynand Alkema,Jacob de Vlieg,Jan P. G. Klomp
#t2011
#cBMC Bioinformatics
#index3129031
#% 
#!
  
#*caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts.
#@Richard A. Moffitt,Qiqin Yin-Goen,Todd H. Stokes,R. Mitchell Parry,James H. Torrance,John H. Phan,Andrew N. Young,May D. Wang
#t2011
#cBMC Bioinformatics
#index3129014
#% 
#!
  
#*Selection of organisms for the co-evolution-based study of protein interactions.
#@Dorota Herman,David Ochoa,David de Juan,Daniel Lopez,Alfonso Valencia,Florencio Pazos
#t2011
#cBMC Bioinformatics
#index3129057
#% 
#!
  
#*DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking.
#@Shiyong Liu,Ilya A. Vakser
#t2011
#cBMC Bioinformatics
#index3129003
#% 
#!
  
#*Quantification of Protein Group Coherence and Pathway Assignment Using Functional Association.
#@Meghana Chitale,Shriphani Palakodety,Daisuke Kihara
#t2011
#cBMC Bioinformatics
#index3129092
#% 
#!
  
#*ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra.
#@Franziska Hinkelmann,Madison Brandon,Bonny Guang,Rustin McNeill,Grigoriy Blekherman,Alan Veliz-Cuba,Reinhard C. Laubenbacher
#t2011
#cBMC Bioinformatics
#index3128949
#% 
#!
  
#*Enriching a biomedical event corpus with meta-knowledge annotation.
#@Paul Thompson,Raheel Nawaz,John McNaught,Sophia Ananiadou
#t2011
#cBMC Bioinformatics
#index3128924
#% 
#!
  
#*EnzymeDetector: an integrated enzyme function prediction tool and database.
#@Susanne Quester,Dietmar Schomburg
#t2011
#cBMC Bioinformatics
#index3129099
#% 
#!
  
#*Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling.
#@Mathieu Rousseau,James Fraser,Maria A. Ferraiuolo,Josee Dostie,Mathieu Blanchette
#t2011
#cBMC Bioinformatics
#index3129110
#% 
#!
  
#*Generalized shrinkage F-like statistics for testing an interaction term in gene expression analysis in the presence of heteroscedasticity.
#@Jie Yang,Geroge Casella,Lauren M. McIntyre
#t2011
#cBMC Bioinformatics
#index3129038
#% 
#!
  
#*GO-based Functional Dissimilarity of Gene Sets.
#@Norberto Díaz-Díaz,Jesús S. Aguilar-Ruiz
#t2011
#cBMC Bioinformatics
#index3128986
#% 
#!
  
#*Thawing Frozen Robust Multi-array Analysis (fRMA).
#@Matthew N. McCall,Rafael A. Irizarry
#t2011
#cBMC Bioinformatics
#index3128977
#% 
#!
  
#*The BioLexicon: a large-scale terminological resource for biomedical text mining.
#@Paul Thompson,John McNaught,Simonetta Montemagni,Nicoletta Calzolari,Riccardo Del Gratta,Vivian Lee,Simone Marchi,Monica Monachini,Piotr Pezik,Valeria Quochi,C. J. Rupp,Yutaka Sasaki,Giulia Venturi,Dietrich Rebholz-Schuhmann,Sophia Ananiadou
#t2011
#cBMC Bioinformatics
#index3129019
#% 
#!
  
#*Clustering with position-specific constraints on variance: Applying redescending M-estimators to label-free LC-MS data analysis.
#@Rudolf Fruehwirth,D. R. Mani,Saumyadipta Pyne
#t2011
#cBMC Bioinformatics
#index3128973
#% 
#!
  
#*Cell Subset Prediction for Blood Genomic Studies.
#@Christopher R. Bolen,Mohamed Uduman,Steven H. Kleinstein
#t2011
#cBMC Bioinformatics
#index3129002
#% 
#!
  
#*BioNOT: A searchable database of biomedical negated sentences.
#@Shashank Agarwal,Hong Yu,Isaac S. Kohane
#t2011
#cBMC Bioinformatics
#index3129025
#% 
#!
  
#*MetaboHunter: an automatic approach for identification of metabolites from 1H-NMR spectra of complex mixtures.
#@Dan C. Tulpan,Serge Leger,Luc Belliveau,Adrian Culf,Miroslava Cuperlovic-Culf
#t2011
#cBMC Bioinformatics
#index3128931
#% 
#!
  
#*S3QL: A distributed domain specific language for controlled semantic integration of life sciences data.
#@Helena F. Deus,Miria C. Correa,Romesh Stanislaus,Maria Miragaia,Wolfgang Maass,Herminia de Lencastre,Ronan Fox,Jonas S. Almeida
#t2011
#cBMC Bioinformatics
#index3129043
#% 
#!
  
#*PMS5: an efficient exact algorithm for the (l, d)-motif finding problem.
#@Hieu Dinh,Sanguthevar Rajasekaran,Vamsi Kundeti
#t2011
#cBMC Bioinformatics
#index3129070
#% 
#!
  
#*Characterization of a Bayesian genetic clustering algorithm based on a Dirichlet process prior and comparison among Bayesian clustering methods.
#@Akio Onogi,Masanobu Nurimoto,Mitsuo Morita
#t2011
#cBMC Bioinformatics
#index3129074
#% 
#!
  
#*MetaboLab - advanced NMR data processing and analysis for metabolomics.
#@Christian Ludwig,Ulrich L. Günther
#t2011
#cBMC Bioinformatics
#index3129093
#% 
#!
  
#*A parallel method for enumerating amino acid compositions and masses of all theoretical peptides.
#@Alexey V. Nefedov,Rovshan G. Sadygov
#t2011
#cBMC Bioinformatics
#index3129030
#% 
#!
  
#*Impact of the spotted microarray preprocessing method on fold-change compression and variance stability.
#@Jérôme Ambroise,Bertrand Bearzatto,Annie Robert,Bernadette Govaerts,Benoit M. Macq,Jean-Luc Gala
#t2011
#cBMC Bioinformatics
#index3129048
#% 
#!
  
#*Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data.
#@David Lopez,David Casero,Shawn Cokus,Sabeeha S. Merchant,Matteo Pellegrini
#t2011
#cBMC Bioinformatics
#index3128983
#% 
#!
  
#*ProbPS: A new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity.
#@Shenghui Zhang,Yaojun Wang,Dongbo Bu,Hong Zhang,Shiwei Sun
#t2011
#cBMC Bioinformatics
#index3128976
#% 
#!
  
#*A comparative study on gene-set analysis methods for assessing differential expression associated with the survival phenotype.
#@Seungyeoun Lee,Jinheum Kim,Sunho Lee
#t2011
#cBMC Bioinformatics
#index3129065
#% 
#!
  
#*An Iterative Approach of Protein Function Prediction.
#@Xiaoxiao Chi,Jingyu Hou
#t2011
#cBMC Bioinformatics
#index3129039
#% 
#!
  
#*Inferring signalling networks from longitudinal data using sampling based approaches in the R-package 'ddepn'.
#@Christian Bender,Silvia vd Heyde,Frauke Henjes,Stefan Wiemann,Ulrike Korf,Tim Beißbarth
#t2011
#cBMC Bioinformatics
#index3129015
#% 
#!
  
#*Semantic Inference using Chemogenomics Data for Drug Discovery.
#@Qian Zhu,Yuyin Sun,Sashikiran Challa,Ying Ding,Michael S. Lajiness,David J. Wild
#t2011
#cBMC Bioinformatics
#index3128955
#% 
#!
  
#*Prediction using step-wise L1, L2 regularization and feature selection for small data sets with large number of features.
#@Ozgur Demir-Kavuk,Mayumi Kamada,Tatsuya Akutsu,Ernst-Walter Knapp
#t2011
#cBMC Bioinformatics
#index3129056
#% 
#!
  
#*Correlated mutations via regularized multinomial regression.
#@Janrdanan Sreekumar,Cajo J. F. ter Braak,Roeland C. H. J. van Ham,Aalt D. J. van Dijk
#t2011
#cBMC Bioinformatics
#index3246002
#% 
#!
  
#*A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships.
#@Claire Lemaitre,Aurélien Barré,Christine Citti,Florence Tardy,Francois Thiaucourt,Pascal Sirand-Pugnet,Patricia Thébault
#t2011
#cBMC Bioinformatics
#index3245995
#% 
#!
  
#*A flexible framework for sparse simultaneous component based data integration.
#@Katrijn Van Deun,Tom F. Wilderjans,Robert A. van den Berg,Anestis Antoniadis,Iven Van Mechelen
#t2011
#cBMC Bioinformatics
#index3245999
#% 
#!
  
#*miREE: miRNA Recognition Elements Ensemble.
#@Paula Helena Reyes-Herrera,Elisa Ficarra,Andrea Acquaviva,Enrico Macii
#t2011
#cBMC Bioinformatics
#index3246008
#% 
#!
  
#*ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets.
#@Alyssa C. Frazee,Ben Langmead,Jeffrey T. Leek
#t2011
#cBMC Bioinformatics
#index3245998
#% 
#!
  
#*iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences.
#@Yi Zheng,Liangjun Zhao,Junping Gao,Zhangjun Fei
#t2011
#cBMC Bioinformatics
#index3246000
#% 
#!
  
#*POPISK: T-cell reactivity prediction using support vector machines and string kernels.
#@Chun-Wei Tung,Matthias Ziehm,Andreas Kamper,Oliver Kohlbacher,Shinn-Ying Ho
#t2011
#cBMC Bioinformatics
#index3245997
#% 
#!
  
#*Identification and correction of systematic error in high-throughput sequence data.
#@Frazer Meacham,Dario Boffelli,Joseph Dhahbi,David I. K. Martin,Meromit Singer,Lior Pachter
#t2011
#cBMC Bioinformatics
#index3246007
#% 
#!
  
#*Validating Clustering of Molecular Dynamics Simulations Using Polymer Models.
#@Joshua L. Phillips,Michael E. Colvin,Shawn Newsam
#t2011
#cBMC Bioinformatics
#index3246006
#% 
#!
  
#*OmniMapFree: A unified tool to visualise and explore sequenced genomes.
#@John Antoniw,Andrew M. Beacham,Thomas K. Baldwin,Martin Urban,Jason J. Rudd,Kim E. Hammond-Kosack
#t2011
#cBMC Bioinformatics
#index3246005
#% 
#!
  
#*Random KNN feature selection - a fast and stable alternative to Random Forests.
#@Shengqiao Li,E. James Harner,Donald A. Adjeroh
#t2011
#cBMC Bioinformatics
#index3246003
#% 
#!
  
#*Unintended consequences of existential quantifications in biomedical ontologies.
#@Martin Boeker,Ilinca Tudose,Janna Hastings,Daniel Schober,Stefan Schulz
#t2011
#cBMC Bioinformatics
#index3246004
#% 
#!
  
#*eXframe: reusable framework for storage, analysis and visualization of genomics experiments.
#@Amit U. Sinha,Emily Merrill,Scott A. Armstrong,Tim W. Clark,Sudeshna Das
#t2011
#cBMC Bioinformatics
#index3245996
#% 
#!
  
#*iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database.
#@Antonio Mora,Ian M. Donaldson
#t2011
#cBMC Bioinformatics
#index3246001
#% 
#!
  
#*Random generalized linear model: a highly accurate and interpretable ensemble predictor.
#@Lin Song,Peter Langfelder,Steve Horvath
#t2013
#cBMC Bioinformatics
#index3610498
#% 
#!
  
#*FUSIM: a software tool for simulating fusion transcripts.
#@Andrew E. Bruno,Jeffrey C. Miecznikowski,Maochun Qin,Jianmin Wang,Song Liu
#t2013
#cBMC Bioinformatics
#index3610463
#% 
#!
  
#*More powerful significant testing for time course gene expression data using functional principal component analysis approaches.
#@Shuang Wu,Hulin Wu
#t2013
#cBMC Bioinformatics
#index3610476
#% 
#!
  
#*A Bayesian method and its variational approximation for prediction of genomic breeding values in multiple traits.
#@Takeshi Hayashi,Hiroyoshi Iwata
#t2013
#cBMC Bioinformatics
#index3610494
#% 
#!
  
#*A fast least-squares algorithm for population inference.
#@R. Mitchell Parry,May D. Wang
#t2013
#cBMC Bioinformatics
#index3610483
#% 
#!
  
#*An improved method to detect correct protein folds using partial clustering.
#@Jianjun Zhou,David S. Wishart
#t2013
#cBMC Bioinformatics
#index3610480
#% 
#!
  
#*The evolutionary rate of antibacterial drug targets.
#@Arkadiusz Gladki,Szymon Kaczanowski,Pawel Szczesny,Piotr Zielenkiewicz
#t2013
#cBMC Bioinformatics
#index3610489
#% 
#!
  
#*M-pick, a Modularity-based Method for OTU Picking of 16S rRNA Sequences.
#@Xiaoyu Wang,Jin Yao,Yijun Sun,Volker Mai
#t2013
#cBMC Bioinformatics
#index3610477
#% 
#!
  
#*MICAN : a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, Ca only models, Alternative alignments, and Non-sequential alignments.
#@Shintaro Minami,Kengo Sawada,George Chikenji
#t2013
#cBMC Bioinformatics
#index3610482
#% 
#!
  
#*FANTOM: Functional and taxonomic analysis of metagenomes.
#@Kemal Sanli,Fredrik H. Karlsson,Intawat Nookaew,Jens Nielsen
#t2013
#cBMC Bioinformatics
#index3610462
#% 
#!
  
#*A novel application of motion analysis for detecting stress responses in embryos at different stages of development.
#@Oliver Tills,Tabitha Bitterli,Phil F. Culverhouse,John I. Spicer,Simon Rundle
#t2013
#cBMC Bioinformatics
#index3610502
#% 
#!
  
#*Estimation of data-specific constitutive exons with RNA-Seq data.
#@Ellis Patrick,Michael J. Buckley,Yee Hwa Yang
#t2013
#cBMC Bioinformatics
#index3610488
#% 
#!
  
#*Mojo hand, a TALEN design tool for genome editing applications.
#@Kevin L. Neff,David P. Argue,Alvin C. Ma,Han B. Lee,Karl J. Clark,Stephen C. Ekker
#t2013
#cBMC Bioinformatics
#index3610474
#% 
#!
  
#*Extending the BEAGLE library to a multi-FPGA platform.
#@Zheming Jin,Jason D. Bakos
#t2013
#cBMC Bioinformatics
#index3610496
#% 
#!
  
#*Cophenetic metrics for phylogenetic trees, after Sokal and Rohlf.
#@Gabriel Cardona,Arnau Mir,Francesc Rosselló Llompart,Lucia Rotger,David Sanchez
#t2013
#cBMC Bioinformatics
#index3610485
#% 
#!
  
#*puma 3.0: improved uncertainty propagation methods for gene and transcript expression analysis.
#@Xuejun Liu,Zhenzhu Gao,Li Zhang,Magnus Rattray
#t2013
#cBMC Bioinformatics
#index3610495
#% 
#!
  
#*SyntTax: a web server linking synteny to prokaryotic taxonomy.
#@Jacques Oberto
#t2013
#cBMC Bioinformatics
#index3610465
#% 
#!
  
#*Kerfuffle: a web tool for multi-species gene colocalization analysis.
#@Robert Aboukhalil,Bernard Fendler,Gurinder S. Atwal
#t2013
#cBMC Bioinformatics
#index3610486
#% 
#!
  
#*XperimentR: painless annotation of a biological experiment for the laboratory scientist.
#@Christopher D. Tomlinson,Geraint Barton,Mark Woodbridge,Sarah A. Butcher
#t2013
#cBMC Bioinformatics
#index3610497
#% 
#!
  
#*A new unsupervised gene clustering algorithm based on the integration of biological knowledge into expression data.
#@Marie Verbanck,Sébastien Lê,Jér?me Pagès
#t2013
#cBMC Bioinformatics
#index3610464
#% 
#!
  
#*Predicting PDZ domain mediated protein interactions from structure.
#@Shirley Hui,Xiang Xing,Gary D. Bader
#t2013
#cBMC Bioinformatics
#index3610484
#% 
#!
  
#*BioCause: Annotating and analysing causality in the biomedical domain.
#@Claudiu Mihaila,Tomoko Ohta,Sampo Pyysalo,Sophia Ananiadou
#t2013
#cBMC Bioinformatics
#index3610501
#% 
#!
  
#*A Parzen window-based approach for the detection of locally enriched transcription factor binding sites.
#@Alexis Vandenbon,Yutaro Kumagai,Shunsuke Teraguchi,Karlou Mar Amada,Shizuo Akira,Daron M. Standley
#t2013
#cBMC Bioinformatics
#index3610487
#% 
#!
  
#*CySBGN: A Cytoscape plug-in to integrate SBGN maps.
#@Emanuel J. V. Gon?alves,Martijn v Iersel,Julio Saez-Rodriguez
#t2013
#cBMC Bioinformatics
#index3610466
#% 
#!
  
#*Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data.
#@Andrew Gallant,Mark D. M. Leiserson,Maxim Kachalov,Lenore J. Cowen,Benjamin J. Hescott
#t2013
#cBMC Bioinformatics
#index3610475
#%1333111
#!
  
#*SRAdb: query and use public next-generation sequencing data from within R.
#@Yuelin Zhu,Robert M. Stephens,Paul S. Meltzer,Sean R. Davis
#t2013
#cBMC Bioinformatics
#index3610472
#% 
#!
  
#*JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison.
#@Phillip Seitzer,Tu Anh Huynh,Marc T. Facciotti
#t2013
#cBMC Bioinformatics
#index3610479
#% 
#!
  
#*MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis.
#@Kjetil Klepper,Finn Drabl?s
#t2013
#cBMC Bioinformatics
#index3610461
#% 
#!
  
#*Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure.
#@Yasin Bakis,Hasan H. Otu,Nivart Ta?i,Cem Meydan,Nee Bilgin,Sirri Yüzbaiolu,Osman Ugur Sezerman
#t2013
#cBMC Bioinformatics
#index3610492
#% 
#!
  
#*GSVA: gene set variation analysis for microarray and RNA-Seq data.
#@Sonja H?nzelmann,Robert Castelo,Justin Guinney
#t2013
#cBMC Bioinformatics
#index3610478
#% 
#!
  
#*Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms.
#@Anthony G. Doran,Christopher J. Creevey
#t2013
#cBMC Bioinformatics
#index3610473
#% 
#!
  
#*xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data.
#@Karan Uppal,Quinlyn A. Soltow,Frederick H. Strobel,W. Stephen Pittard,Kim M. Gernert,Tianwei Yu,Dean P. Jones
#t2013
#cBMC Bioinformatics
#index3610500
#% 
#!
  
#*Machine learning methods can replace 3D profile method in classification of amyloidogenic hexapeptides.
#@Jerzy Stanislawski,Malgorzata Kotulska,Olgierd Unold
#t2013
#cBMC Bioinformatics
#index3610467
#% 
#!
  
#*An integrated pharmacokinetics ontology and corpus for text mining.
#@Heng-Yi Wu,Shreyas D. Karnik,Abhinita Subhadarshini,Zhiping Wang,Santosh Philips,Xu Han,Chienwei Chiang,Lei Liu,Malaz Boustani,Luis Mateus Rocha,Sara K. Quinney,David A. Flockhart,Lang Li
#t2013
#cBMC Bioinformatics
#index3610490
#% 
#!
  
#*Negated bio-events: analysis and identification.
#@Raheel Nawaz,Paul Thompson,Sophia Ananiadou
#t2013
#cBMC Bioinformatics
#index3610460
#% 
#!
  
#*Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information.
#@Bharat Panwar,Sudheer Gupta,Gajendra P. Raghava
#t2013
#cBMC Bioinformatics
#index3610469
#% 
#!
  
#*Redundancy in electronic health record corpora: analysis, impact on text mining performance and mitigation strategies.
#@Raphael Cohen,Michael Elhadad,Noemie Elhadad
#t2013
#cBMC Bioinformatics
#index3610493
#% 
#!
  
#*Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion.
#@Sepideh Babaei,Marc Hulsman,Marcel J. T. Reinders,Jeroen de Ridder
#t2013
#cBMC Bioinformatics
#index3610470
#% 
#!
  
#*The taxonomic name resolution service: an online tool for automated standardization of plant names.
#@Brad Boyle,Nicole Hopkins,Zhenyuan Lu,Juan Antonio Raygoza Garay,Dmitry Mozzherin,Tony Rees,Naim Matasci,Martha L. Narro,William H. Piel,Sheldon J. McKay,Sonya J. Lowry,Chris Freeland,Robert K. Peet,Brian J. Enquist
#t2013
#cBMC Bioinformatics
#index3610459
#% 
#!
  
#*Elucidating the crosstalk mechanism between IFN-gamma and IL-6 via mathematical modelling.
#@Yun-feng Qi,Yanxin Huang,Hong-yan Wang,Yu Zhang,Yongli Bao,Lu-guo Sun,Yin Wu,Chun-lei Yu,Zhen-bo Song,Li-hua Zheng,Ying Sun,Guan-nan Wang,Yuxin Li
#t2013
#cBMC Bioinformatics
#index3610481
#% 
#!
  
#*Mechanistic analysis of multi-omics datasets to generate kinetic parameters for constraint-based metabolic models.
#@Cameron Cotten,Jennifer L. Reed
#t2013
#cBMC Bioinformatics
#index3610499
#% 
#!
  
#*A detailed error analysis of 13 kernel methods for protein-protein interaction extraction.
#@Domonkos Tikk,Illés Solt,Philippe E. Thomas,Ulf Leser
#t2013
#cBMC Bioinformatics
#index3610468
#% 
#!
  
#*Seq2Ref: a web server to facilitate functional interpretation.
#@Wenlin Li,Qian Cong,Lisa N. Kinch,Nick V. Grishin
#t2013
#cBMC Bioinformatics
#index3610491
#% 
#!
  
#*ACG: rapid inference of population history from recombining nucleotide sequences.
#@Brendan O'Fallon
#t2013
#cBMC Bioinformatics
#index3610458
#% 
#!
  
#*HTQC: a fast quality control toolkit for Illumina sequencing data.
#@Xi Yang,Di Liu,Fei Liu,Jun Wu,Jing Zou,Xue Xiao,Fangqing Zhao,Baoli Zhu
#t2013
#cBMC Bioinformatics
#index3610471
#% 
#!
  
#*Genome sequence-based species delimitation with confidence intervals and improved distance functions.
#@Jan P. Meier-Kolthoff,Alexander F. Auch,Hans-Peter Klenk,Markus G?ker
#t2013
#cBMC Bioinformatics
#index3644065
#% 
#!
  
#*Inferring microRNA and transcription factor regulatory networks in heterogeneous data.
#@Thuc Duy Le,Lin Liu,Bing Liu,Anna Tsykin,Gregory J. Goodall,Kenji Satou,Jiuyong Li
#t2013
#cBMC Bioinformatics
#index3644097
#% 
#!
  
#*A distance-field based automatic neuron tracing method.
#@Jinzhu Yang,Paloma T. Gonzalez-Bellido,Hanchuan Peng
#t2013
#cBMC Bioinformatics
#index3644096
#% 
#!
  
#*Prediction of a time-to-event trait using genome wide SNP data.
#@Jinseog Kim,Insuk Sohn,Dae-Soon Son,Dong Hwan Kim,TaeJin Ahn,Sin-Ho Jung
#t2013
#cBMC Bioinformatics
#index3644087
#% 
#!
  
#*A computational method for detecting copy number variations using scale-space filtering.
#@Jongkeun Lee,Unjoo Lee,Baeksop Kim,Jeehee Yoon
#t2013
#cBMC Bioinformatics
#index3644090
#% 
#!
  
#*Digital sorting of complex tissues for cell type-specific gene expression profiles.
#@Yi Zhong,Yin-Wooi Wan,Kaifang Pang,Lionel M. L. Chow,Zhandong Liu
#t2013
#cBMC Bioinformatics
#index3644077
#% 
#!
  
#*BOND: Basic OligoNucleotide Design.
#@Lucian Ilie,Hamid Mohamadi,Geoffrey Brian Golding,William F. Smyth
#t2013
#cBMC Bioinformatics
#index3644070
#% 
#!
  
#*Empirical Bayes estimation of posterior probabilities of enrichment: A comparative study of five estimators of the local false discovery rate.
#@Zhenyu Yang,Zuojing Li,David R. Bickel
#t2013
#cBMC Bioinformatics
#index3644072
#% 
#!
  
#*MethylPCA: a toolkit to control for confounders in methylome-wide association studies.
#@Wenan Chen,Guimin Gao,Srilaxmi Nerella,Christina M. Hultman,Patrik K. E. Magnusson,Patrick F. Sullivan,Karolina A. Aberg,Edwin J. C. G. van den Oord
#t2013
#cBMC Bioinformatics
#index3644079
#% 
#!
  
#*Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samples.
#@David Mosén-Ansorena,Ana María Aransay
#t2013
#cBMC Bioinformatics
#index3644089
#% 
#!
  
#*Optimal precursor ion selection for LC-MALDI MS/MS.
#@Alexandra Zerck,Eckhard Nordhoff,Hans Lehrach,Knut Reinert
#t2013
#cBMC Bioinformatics
#index3644108
#% 
#!
  
#*PREDIVAC: CD4+ T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity.
#@Patricio Oyarzún,Jonathan J. Ellis,Mikael Bodén,Bostjan Kobe
#t2013
#cBMC Bioinformatics
#index3644080
#% 
#!
  
#*BioTile, A Perl based tool for the identification of differentially enriched regions in tiling microarray data.
#@Jerry Guintivano,Michal Arad,Kellie L. K. Tamashiro,Todd D. Gould,Zachary A. Kaminsky
#t2013
#cBMC Bioinformatics
#index3644107
#% 
#!
  
#*DNdisorder: predicting protein disorder using boosting and deep networks.
#@Jesse Eickholt,Jianlin Cheng
#t2013
#cBMC Bioinformatics
#index3644067
#% 
#!
  
#*Gimli: open source and high-performance biomedical name recognition.
#@David Campos,Sérgio Matos,José Luís Oliveira
#t2013
#cBMC Bioinformatics
#index3644098
#% 
#!
  
#*Identification of germ cell-specific genes in mammalian meiotic prophase.
#@Yunfei Li,Debjit Ray,Ping Ye
#t2013
#cBMC Bioinformatics
#index3644099
#% 
#!
  
#*A hybrid short read mapping accelerator.
#@Yupeng Chen,Bertil Schmidt,Douglas L. Maskell
#t2013
#cBMC Bioinformatics
#index3644092
#% 
#!
  
#*An improved sequence based prediction protocol for DNA-binding proteins using SVM and comprehensive feature analysis.
#@Chuanxin Zou,Jiayu Gong,Honglin Li
#t2013
#cBMC Bioinformatics
#index3644093
#% 
#!
  
#*MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.
#@Brian L. LaMarche,Kevin L. Crowell,Navdeep Jaitly,Vladislav A. Petyuk,Anuj R. Shah,Ashoka D. Polpitiya,John D. Sandoval,Gary R. Kiebel,Matthew E. Monroe,Stephen J. Callister,Thomas O. Metz,Gordon A. Anderson,Richard D. Smith
#t2013
#cBMC Bioinformatics
#index3644086
#% 
#!
  
#*virtualArray: a R/bioconductor package to merge raw data from different microarray platforms.
#@Andreas Heider,Rüdiger Alt
#t2013
#cBMC Bioinformatics
#index3644075
#% 
#!
  
#*Estimation of CpG coverage in whole methylome next-generation sequencing studies.
#@Edwin J. C. G. van den Oord,József Bukszár,Gábor Rudolf,Srilaxmi Nerella,Joseph L. McClay,Lin Y. Xie,Karolina A. Aberg
#t2013
#cBMC Bioinformatics
#index3644106
#% 
#!
  
#*Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution.
#@Guy Baele,Philippe Lemey,Stijn Vansteelandt
#t2013
#cBMC Bioinformatics
#index3644100
#% 
#!
  
#*Protein structure based prediction of catalytic residues.
#@J. Eduardo Fajardo,András Fiser
#t2013
#cBMC Bioinformatics
#index3644091
#% 
#!
  
#*AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures.
#@John C. Earls,James A. Eddy,Cory C. Funk,Youn-Hee Ko,Andrew T. Magis,Nathan D. Price
#t2013
#cBMC Bioinformatics
#index3644069
#% 
#!
  
#*Evaluating the use of different positional strategies for sentence selection in biomedical literature summarization.
#@Laura Plaza,Jorge Carrillo de Albornoz
#t2013
#cBMC Bioinformatics
#index3644078
#% 
#!
  
#*FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets.
#@Bernard J. Pope,Tu Nguyen-Dumont,Fabrice Odefrey,Russell Bell,Sean V. Tavtigian,David E. Goldgar,Andrew Lonie,Melissa C. Southey,Daniel J. Park
#t2013
#cBMC Bioinformatics
#index3644105
#% 
#!
  
#*STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation.
#@Tobias Wittkop,Emily TerAvest,Uday S. Evani,K. Mathew Fleisch,Ari E. Berman,Corey Powell,Nigam H. Shah,Sean D. Mooney
#t2013
#cBMC Bioinformatics
#index3644085
#% 
#!
  
#*Comparative analysis of microbiome measurement platforms using latent variable structural equation modeling.
#@Xiao Wu,Kathryn Berkow,Daniel N. Frank,Ellen Li,Ajay S. Gulati,Wei Zhu
#t2013
#cBMC Bioinformatics
#index3644094
#% 
#!
  
#*Discovery of novel biomarkers and phenotypes by semantic technologies.
#@Carlo A. Trugenberger,Christoph W?lti,David Peregrim,Mark E. Sharp,Svetlana Bureeva
#t2013
#cBMC Bioinformatics
#index3644102
#% 
#!
  
#*Learning a peptide-protein binding affinity predictor with kernel ridge regression.
#@Sébastien Giguère,Mario Marchand,Fran?ois Laviolette,Alexandre Drouin,Jacques Corbeil
#t2013
#cBMC Bioinformatics
#index3644104
#% 
#!
  
#*Multiple consensus trees: a method to separate divergent genes.
#@Alain Guénoche
#t2013
#cBMC Bioinformatics
#index3644109
#% 
#!
  
#*Predictability of gene ontology slim-terms from primary structure information in Embryophyta plant proteins.
#@Jorge Alberto Jaramillo-Garzón,Joan-Josep Gallardo-Chacón,César Germán Castellanos-Domínguez,Alexandre Perera-Lluna
#t2013
#cBMC Bioinformatics
#index3644103
#% 
#!
  
#*Prediction of heterogeneous differential genes by detecting outliers to a Gaussian tight cluster.
#@Zihua Yang,Zhengrong Yang
#t2013
#cBMC Bioinformatics
#index3644111
#% 
#!
  
#*Active Subnetwork Recovery with a Mechanism-Dependent Scoring Function; with application to Angiogenesis and Organogenesis studies.
#@Ilana Lichtenstein,Michael A. Charleston,Tiberio S. Caetano,Jennifer R. Gamble,Mathew A. Vadas
#t2013
#cBMC Bioinformatics
#index3644073
#% 
#!
  
#*Predictive modeling of anti-malarial molecules inhibiting apicoplast formation.
#@Salma Jamal,Vinita Periwal,Vinod Scaria
#t2013
#cBMC Bioinformatics
#index3644084
#% 
#!
  
#*ClusCo: clustering and comparison of protein models.
#@Michal Jamróz,Andrzej Kolinski
#t2013
#cBMC Bioinformatics
#index3644083
#% 
#!
  
#*Improved shrunken centroid classifiers for high-dimensional class-imbalanced data.
#@Rok Blagus,Lara Lusa
#t2013
#cBMC Bioinformatics
#index3644076
#% 
#!
  
#*GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures.
#@Bj?rn Hammesfahr,Florian Odronitz,Stefanie Mühlhausen,Stephan Waack,Martin Kollmar
#t2013
#cBMC Bioinformatics
#index3644101
#% 
#!
  
#*Age-adjusted nonparametric detection of differential DNA methylation with case-control designs.
#@Hanwen Huang,Zhongxue Chen,Xudong Huang
#t2013
#cBMC Bioinformatics
#index3644110
#% 
#!
  
#*A comparison of methods for differential expression analysis of RNA-seq data.
#@Charlotte Soneson,Mauro Delorenzi
#t2013
#cBMC Bioinformatics
#index3644081
#% 
#!
  
#*A novel method for cross-species gene expression analysis.
#@Erik Kristiansson,Tobias ?sterlund,Lina Gunnarsson,Gabriella Arne,D. G. Joakim Larsson,Olle Nerman
#t2013
#cBMC Bioinformatics
#index3644088
#% 
#!
  
#*HuntMi: an efficient and taxon-specific approach in pre-miRNA identification.
#@Adam Gudys,Michal Wojciech Szczesniak,Marek Sikora,Izabela Makalowska
#t2013
#cBMC Bioinformatics
#index3644068
#% 
#!
  
#*ETHNOPRED: a novel machine learning method for accurate continental and sub-continental ancestry identification and population stratification correction.
#@Mohsen Hajiloo,Yadav Sapkota,John R. Mackey,Paula Robson,Russell Greiner,Sambasivarao Damaraju
#t2013
#cBMC Bioinformatics
#index3644082
#% 
#!
  
#*Local search for the generalized tree alignment.
#@Andrés Varón,Ward C. Wheeler
#t2013
#cBMC Bioinformatics
#index3644095
#% 
#!
  
#*Semantic representation of monogenean haptoral Bar image annotation.
#@Arpah Abu,Lee Hong Lim,Amandeep S. Sidhu,Sarinder K. Dhillon
#t2013
#cBMC Bioinformatics
#index3644074
#% 
#!
  
#*search GenBank: interactive orchestration and ad-hoc choreography of Web services in the exploration of the biomedical resources of the National Center For Biotechnology Information.
#@Dariusz Mrozek,Bozena Malysiak-Mrozek,Artur Siaznik
#t2013
#cBMC Bioinformatics
#index3644071
#% 
#!
  
#*A survey of protein interaction data and multigenic inherited disorders.
#@Antonio Mora,Katerina Michalickova,Ian M. Donaldson
#t2013
#cBMC Bioinformatics
#index3644066
#% 
#!
  
#*Mouse-human Comparative Map Resources on the Web.
#@Beth K. Gatewood,Robert W. Cottingham
#t2000
#cBriefings in Bioinformatics
#index762282
#% 
#!
  
#*Large-scale analysis of gene expression profiles.
#@Thomas D. Wu
#t2002
#cBriefings in Bioinformatics
#index762283
#% 
#!
  
#*Combining microarrays and genetic analysis.
#@Rudi Alberts,Jingyuan Fu,Morris A. Swertz,L. Alrik Lubbers,Casper J. Albers,Ritsert C. Jansen
#t2005
#cBriefings in Bioinformatics
#index762284
#% 
#!
  
#*Software Review Exploring Protein Domain Structure.
#@Jon C. Ison
#t2000
#cBriefings in Bioinformatics
#index762285
#% 
#!
  
#*Editorial: Building successful biological databases.
#@Russ B. Altman
#t2004
#cBriefings in Bioinformatics
#index762286
#% 
#!
  
#*Information Resources for the Bioinformatician.
#@Jon C. Ison,Sinead B. O'Leary,Alan J. Bleasby,David S. Moss
#t2000
#cBriefings in Bioinformatics
#index762287
#% 
#!
  
#*Editorial: Annual progress in bioinformatics.
#@Russ B. Altman
#t2005
#cBriefings in Bioinformatics
#index762288
#% 
#!
  
#*Tutorial Section: Entrez: Making Use of Its Power.
#@Renata C. Geer,Eric W. Sayers
#t2003
#cBriefings in Bioinformatics
#index762289
#% 
#!
  
#*Book reviews.
#@
#t2003
#cBriefings in Bioinformatics
#index762290
#% 
#!
  
#*News section.
#@Josiah Altschuler,Marilyn Safran,Doron Lancet,Lakshmanan Iyer
#t2004
#cBriefings in Bioinformatics
#index762291
#% 
#!
  
#*Protein Function From the Perspective of Molecular Interactions and Genetic Networks.
#@Bernard Jacq
#t2001
#cBriefings in Bioinformatics
#index762292
#% 
#!
  
#*Large-scale Production of Mouse Phenotypes: the Search for Animal Models for Inherited M. Diseases in Humans.
#@Martin Hrabé de Angelis,Mark Strivens
#t2001
#cBriefings in Bioinformatics
#index762293
#% 
#!
  
#*Protein Structure Prediction in Genomics.
#@David T. Jones
#t2001
#cBriefings in Bioinformatics
#index762294
#% 
#!
  
#*Functional Information in SWISS-PROT: the Basis for Large-scale Characterisation of Protein Sequences.
#@Rolf Apweiler
#t2001
#cBriefings in Bioinformatics
#index762295
#% 
#!
  
#*Searching the Expressed Sequence Tag (EST) Databases: Panning for Genes.
#@C. Victor Jongeneel
#t2000
#cBriefings in Bioinformatics
#index762296
#% 
#!
  
#*Software review: Federating data with Information Integrator.
#@Andrew D. Arenson
#t2003
#cBriefings in Bioinformatics
#index762297
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2002
#cBriefings in Bioinformatics
#index762298
#% 
#!
  
#*The Role of Pattern Databases in Sequence Analysis.
#@Terri K. Attwood
#t2000
#cBriefings in Bioinformatics
#index762299
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2002
#cBriefings in Bioinformatics
#index762300
#% 
#!
  
#*The PRINTS Database: A Resource for Identification of Protein Families.
#@Terri K. Attwood
#t2002
#cBriefings in Bioinformatics
#index762301
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2003
#cBriefings in Bioinformatics
#index762302
#% 
#!
  
#*Probabilistic methods of identifying genes in prokaryotic genomes: Connections to the HMM theory.
#@Rajeev K. Azad,Mark Borodovsky
#t2004
#cBriefings in Bioinformatics
#index762303
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2003
#cBriefings in Bioinformatics
#index762304
#% 
#!
  
#*Clustering-based Approaches to Discovering and Visualising Microarray Data Patterns.
#@Francisco Azuaje
#t2003
#cBriefings in Bioinformatics
#index762305
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2003
#cBriefings in Bioinformatics
#index762306
#% 
#!
  
#*Editorial: Modelling Cell Systems - The Post-genomic Challenge.
#@Stephen Baigent
#t2001
#cBriefings in Bioinformatics
#index762307
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2003
#cBriefings in Bioinformatics
#index762308
#% 
#!
  
#*Gepasi 3.0.
#@Stephen Baigent
#t2001
#cBriefings in Bioinformatics
#index762309
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2004
#cBriefings in Bioinformatics
#index762310
#% 
#!
  
#*Swiss-Prot: Juggling between evolution and stability.
#@Amos Bairoch,Brigitte Boeckmann,Serenella Ferro,Elisabeth Gasteiger
#t2004
#cBriefings in Bioinformatics
#index762311
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2004
#cBriefings in Bioinformatics
#index762312
#% 
#!
  
#*Comparing the Success of Different Prediction Software in Sequence Analysis: A Review.
#@Vladimir B. Baji
#t2000
#cBriefings in Bioinformatics
#index762313
#% 
#!
  
#*Comparative Analysis of Regulatory Patterns in Bacterial Genomes.
#@Mikhail S. Gelfand,Pavel S. Novichkov,Elena S. Novichkova,Andrey A. Mironov
#t2000
#cBriefings in Bioinformatics
#index762314
#% 
#!
  
#*Get ready to GO! A biologist's guide to the Gene Ontology.
#@
#t2005
#cBriefings in Bioinformatics
#index762315
#% 
#!
  
#*The Edinburgh Mouse Atlas: Using the CD.
#@Richard A. Baldock,Jonathan Bard,Roberto Brunelli,Bill Hill,Matthew Kaufman,Kristie Opstad,David Smith,Margaret Stark,Andrew M. Waterhouse,Yiya Yang,Duncan Davidson
#t2001
#cBriefings in Bioinformatics
#index762316
#% 
#!
  
#*Simultaneous Modelling of Metabolic, Genetic and Product-interaction Networks.
#@Nick S. Juty,Hugh D. Spence,Hans R. Hotz,Haizhou Tang,Igor Goryanin,T. Charles Hodgman
#t2001
#cBriefings in Bioinformatics
#index762317
#% 
#!
  
#*Ontologies of Developmental Anatomy: Their Current and Future Roles.
#@Jonathan Bard,Robin Winter
#t2001
#cBriefings in Bioinformatics
#index762318
#% 
#!
  
#*Integrated analysis of the genome and the transcriptome by FANTOM.
#@Shintaro Katayama,Mutsumi Kanamori,Yoshihide Hayashizaki
#t2004
#cBriefings in Bioinformatics
#index762319
#% 
#!
  
#*HMM-based databases in InterPro.
#@Alex Bateman,Daniel H. Haft
#t2002
#cBriefings in Bioinformatics
#index762320
#% 
#!
  
#*Getting Started with Acedb.
#@Simon Kelley
#t2000
#cBriefings in Bioinformatics
#index762321
#% 
#!
  
#*The many faces of sequence alignment.
#@Serafim Batzoglou
#t2005
#cBriefings in Bioinformatics
#index762322
#% 
#!
  
#*Inferring gene networks from time series microarray data using dynamic Bayesian networks.
#@SunYong Kim,Seiya Imoto,Satoru Miyano
#t2003
#cBriefings in Bioinformatics
#index762323
#% 
#!
  
#*Exact mapping of prokaryotic gene starts.
#@M. V. Baytaluk,Mikhail S. Gelfand,Andrey A. Mironov
#t2002
#cBriefings in Bioinformatics
#index762324
#% 
#!
  
#*Functional annotation of proteomic sequences based on consensus of sequence and structural analysis.
#@David H. Kitson,Azat Ya. Badretdinov,Zhan-yang Zhu,Mikhail Velikanov,David J. Edwards,Krzysztof A. Olszewski,Sándor Szalma,Lisa Yan
#t2002
#cBriefings in Bioinformatics
#index762325
#% 
#!
  
#*Current efforts in the analysis of RNAi and RNAi target genes.
#@Peter Bengert,Thomas Dandekar
#t2005
#cBriefings in Bioinformatics
#index762326
#% 
#!
  
#*Editorial.
#@Jacob Koehler
#t2005
#cBriefings in Bioinformatics
#index762327
#% 
#!
  
#*Viewing and Annotating Sequence Data with Artemis.
#@Matthew Berriman,Kim Rutherford
#t2003
#cBriefings in Bioinformatics
#index762328
#% 
#!
  
#*Delineation of modular proteins: Domain boundary prediction from sequence information.
#@Lesheng Kong,Shoba Ranganathan
#t2004
#cBriefings in Bioinformatics
#index762329
#% 
#!
  
#*Using fold recognition to search for useful proteins: Bayesian approach to fold recognition.
#@Jadwiga R. Bienkowska
#t2002
#cBriefings in Bioinformatics
#index762330
#% 
#!
  
#*There is no silver bullet - a guide to low-level data transforms and normalisation methods for microarray data.
#@David P. Kreil,Roslin Russell
#t2005
#cBriefings in Bioinformatics
#index762331
#% 
#!
  
#*Biological database design and implementation.
#@Ewan Birney,Michele E. Clamp
#t2004
#cBriefings in Bioinformatics
#index762332
#% 
#!
  
#*MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment.
#@Sudhir Kumar,Koichiro Tamura,Masatoshi Nei
#t2004
#cBriefings in Bioinformatics
#index762333
#% 
#!
  
#*Editorial.
#@Martin Bishop
#t2000
#cBriefings in Bioinformatics
#index762334
#% 
#!
  
#*Software Review HOBACGEN: Homologous Bacterial Genes Database.
#@Frank W. Larimer
#t2000
#cBriefings in Bioinformatics
#index762335
#% 
#!
  
#*Editorial.
#@Martin Bishop
#t2000
#cBriefings in Bioinformatics
#index762336
#% 
#!
  
#*Farm Animal Genome Databases.
#@Andrew S. Law,Alan L. Archibald
#t2000
#cBriefings in Bioinformatics
#index762337
#% 
#!
  
#*Editorial.
#@Martin Bishop
#t2000
#cBriefings in Bioinformatics
#index762338
#% 
#!
  
#*Bioinformatics analysis of alternative splicing.
#@Christopher Lee,Qi Wang
#t2005
#cBriefings in Bioinformatics
#index762339
#% 
#!
  
#*Editorial.
#@Martin Bishop
#t2002
#cBriefings in Bioinformatics
#index762340
#% 
#!
  
#*Human Sequence Variation and Mutation Databases.
#@Heikki Lehväslaiho
#t2000
#cBriefings in Bioinformatics
#index762341
#% 
#!
  
#*Editorial.
#@Martin Bishop
#t2003
#cBriefings in Bioinformatics
#index762342
#% 
#!
  
#*Protein Structure Prediction Methods for Drug Design.
#@Thomas Lengauer,Ralf Zimmer
#t2000
#cBriefings in Bioinformatics
#index762343
#% 
#!
  
#*Editorial: Omics research and bioinformatics - joined-up thinking or anarchy?
#@Martin Bishop
#t2003
#cBriefings in Bioinformatics
#index762344
#% 
#!
  
#*Genetic association studies: Design, analysis and interpretation.
#@C. M. Lewis
#t2002
#cBriefings in Bioinformatics
#index762345
#% 
#!
  
#*Editorial.
#@Martin Bishop
#t2004
#cBriefings in Bioinformatics
#index762346
#% 
#!
  
#*Application of in silico positional cloning and bioinformatic mutation analysis to the study of eye diseases.
#@Agnieszka M. Lichanska,D. A. C. Simpson
#t2002
#cBriefings in Bioinformatics
#index762347
#% 
#!
  
#*Editorial.
#@Martin J. Bishop
#t2005
#cBriefings in Bioinformatics
#index762348
#% 
#!
  
#*Pise: Software for Building Bioinformatics Webs.
#@Don Gilbert
#t2002
#cBriefings in Bioinformatics
#index762349
#% 
#!
  
#*Bayesian Inference for Gene Expression and Proteomics.
#@Ping Ma
#t2007
#cBriefings in Bioinformatics
#index762350
#% 
#!
  
#*Applications of InterPro in Protein Annotation and Genome Analysis.
#@Margaret Biswas,Joseph F. O'Rourke,Evelyn Camon,Gillian Fraser,Alexander Kanapin,Youla Karavidopoulou,Paul Kersey,Evgenia V. Kriventseva,Virginie Mittard,Nicola J. Mulder,Isabelle Phan,Florence Servant,Rolf Apweiler
#t2002
#cBriefings in Bioinformatics
#index762351
#% 
#!
  
#*Bioinformatics for glycomics: Status, methods, requirements and perspectives.
#@Claus-Wilhelm von der Lieth,Andreas Bohne-Lang,Klaus Karl Lohmann,Martin Frank
#t2004
#cBriefings in Bioinformatics
#index762352
#% 
#!
  
#*Information extraction in molecular biology.
#@Christian Blaschke,Lynette Hirschman,Alfonso Valencia
#t2002
#cBriefings in Bioinformatics
#index762353
#% 
#!
  
#*Editorial: Pathways of bioinformatics - from data to diseases.
#@Hwa A. Lim
#t2002
#cBriefings in Bioinformatics
#index762354
#% 
#!
  
#*Editorial: Stable funding for open source software?
#@Alan J. Bleasby
#t2004
#cBriefings in Bioinformatics
#index762355
#% 
#!
  
#*Software Review: Protein Family Alignment Annotation.
#@Don Gilbert
#t2003
#cBriefings in Bioinformatics
#index762356
#% 
#!
  
#*Three lectures on case-control genetic association analysis.
#@Wentian Li
#t2008
#cBriefings in Bioinformatics
#index762357
#% 
#!
  
#*Conceptual data modelling for bioinformatics.
#@Erich Bornberg-Bauer,Norman W. Paton
#t2002
#cBriefings in Bioinformatics
#index762358
#% 
#!
  
#*In silico tools for signal transduction research.
#@Jessica M. Lindvall,K. Emelie M. Blomberg,C. I. Edvard Smith
#t2003
#cBriefings in Bioinformatics
#index762359
#% 
#!
  
#*The Protein Data Bank and lessons in data management.
#@Philip E. Bourne,John D. Westbrook,Helen M. Berman
#t2004
#cBriefings in Bioinformatics
#index762360
#% 
#!
  
#*Dimensionality and Dependence Problems in Statistical Genomics.
#@Pietro Liò
#t2003
#cBriefings in Bioinformatics
#index762361
#% 
#!
  
#*Computational Genome Analysis: an Introduction: Richard C. Deonier, Simon Tavaré and Michael S. Waterman.
#@Yunlong Liu
#t2007
#cBriefings in Bioinformatics
#index762362
#% 
#!
  
#*Engineering Virtual Cardiac Tissue.
#@Mark R. Boyett,Arun V. Holden,Henggui Zhang
#t2001
#cBriefings in Bioinformatics
#index762363
#% 
#!
  
#*Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem.
#@Ross Lippert,Russell Schwartz,Giuseppe Lancia,Sorin Istrail
#t2002
#cBriefings in Bioinformatics
#index762364
#% 
#!
  
#*In silico prediction of the structure of membrane proteins: Is it feasible?
#@Rita Casadio,Piero Fariselli,Pier Luigi Martelli
#t2003
#cBriefings in Bioinformatics
#index762365
#% 
#!
  
#*Global Computing for Bioinformatics.
#@Laurence Loewe
#t2002
#cBriefings in Bioinformatics
#index762366
#% 
#!
  
#*A review of bioinformatics degrees in Australia.
#@Sonia Cattley
#t2004
#cBriefings in Bioinformatics
#index762367
#% 
#!
  
#*Public services from the European Bioinformatics Institute.
#@Rodrigo Lopez,Karyn Duggan,Nicola Harte,Asif Kibria
#t2003
#cBriefings in Bioinformatics
#index762368
#% 
#!
  
#*An Applications-focused Review of Comparative Genomics Tools: Capabilities, Limitations and Future Challenges.
#@Patrick Chain,Stefan Kurtz,Enno Ohlebusch,Tom Slezak
#t2003
#cBriefings in Bioinformatics
#index762369
#% 
#!
  
#*A Comparison of Microarray Databases.
#@Margaret Gardiner-Garden,Timothy G. Littlejohn
#t2001
#cBriefings in Bioinformatics
#index762370
#% 
#!
  
#*Bioinformatics Basics: Applications in Biological Science and Medicine.: Edited by Lukas K. Buehler and Hooman H. Rashidi.
#@Zhen Lin
#t2008
#cBriefings in Bioinformatics
#index762371
#% 
#!
  
#*GeneAnnot: Interfacing GeneCards with high-throughput gene expression compendia.
#@Vered Chalifa-Caspi,Orit Shmueli,Hila Benjamin-Rodrig,Naomi Rosen,Michael Shmoish,Itai Yanai,Ron Ophir,Pavel Kats,Marilyn Safran,Doron Lancet
#t2003
#cBriefings in Bioinformatics
#index762372
#% 
#!
  
#*VEGA, the genome browser with a difference.
#@Jane Loveland
#t2005
#cBriefings in Bioinformatics
#index762373
#% 
#!
  
#*Links Between Kinetic Data and Sequences in the Alpha/beta-hydrolases Fold Database.
#@Arnaud Chatonnet,Xavier Cousin,Alan J. Robinson
#t2001
#cBriefings in Bioinformatics
#index762374
#% 
#!
  
#*Vector NTI, a balanced all-in-one sequence analysis suite.
#@Guoqing Lu,Etsuko N. Moriyama
#t2004
#cBriefings in Bioinformatics
#index762375
#% 
#!
  
#*Data Analysis and Graphics Using R: An Example-Based Approach, Second Edition.: John Maindonald and John Braun.
#@Zhaohui S. Qin
#t2008
#cBriefings in Bioinformatics
#index762376
#% 
#!
  
#*Editorial: Identity and Interoperability in Bioinformatics.
#@Timothy Clark
#t2003
#cBriefings in Bioinformatics
#index762377
#% 
#!
  
#*Computer programs for eukaryotic gene prediction.
#@V. Makarov
#t2002
#cBriefings in Bioinformatics
#index762378
#% 
#!
  
#*Globally distributed object identification for biological knowledgebases.
#@Tim Clark,Sean Martin,Ted Liefeld
#t2004
#cBriefings in Bioinformatics
#index762379
#% 
#!
  
#*Representing bioinformatics causality.
#@Johannes J. Mandel,Niall M. Palfreyman,Jesús A. López,Werner Dubitzky
#t2004
#cBriefings in Bioinformatics
#index762380
#% 
#!
  
#*A survey of current work in biomedical text mining.
#@Aaron M. Cohen,William R. Hersh
#t2005
#cBriefings in Bioinformatics
#index762381
#% 
#!
  
#*The Bio* toolkits - A Brief Preview.
#@Harry Mangalam
#t2002
#cBriefings in Bioinformatics
#index762382
#% 
#!
  
#*Mining of Assembled Expressed Sequence Tag (EST) Data for Protein Families: Application to the G Protein-coupled Receptor Superfamily.
#@Darrell Conklin,David P. Yee,Richard J. Millar,J. Engelbrecht,H. Vissing
#t2000
#cBriefings in Bioinformatics
#index762383
#% 
#!
  
#*Exploiting Big Biology: Integrating Large-scale Biological Data for Function Inference.
#@Edward M. Marcotte,Shailesh V. Date
#t2001
#cBriefings in Bioinformatics
#index762384
#% 
#!
  
#*A Review of Bioinformatics Education in the UK.
#@Damian Counsell
#t2002
#cBriefings in Bioinformatics
#index762385
#% 
#!
  
#*Arabidopsis Genome Analysis As Exemplified By Analysis of Chromosome 4.
#@Klaus F. X. Mayer,Kai Lemcke,Christine M. Schüller,Stephen Rudd,Paolo Zaccaria
#t2000
#cBriefings in Bioinformatics
#index762386
#% 
#!
  
#*A Review of Bioinformatics Education in the UK.
#@Damian Counsell
#t2003
#cBriefings in Bioinformatics
#index762387
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2005
#cBriefings in Bioinformatics
#index762388
#% 
#!
  
#*Interoperability with Moby 1.0 - It's better than sharing your toothbrush!
#@
#t2008
#cBriefings in Bioinformatics
#index762389
#% 
#!
  
#*Compositional Features of Eukaryotic Genomes for Checking Predicted Genes.
#@Stephane Cruveiller,Kamel Jabbari,Oliver Clay,Giorgio Bernardi
#t2003
#cBriefings in Bioinformatics
#index762390
#% 
#!
  
#*Emerging bioinformatics for the metabolome.
#@Pedro Mendes
#t2002
#cBriefings in Bioinformatics
#index762391
#% 
#!
  
#*An overview of data models for the analysis of biochemical pathways.
#@Yves Deville,David Gilbert,Jacques van Helden,Shoshana J. Wodak
#t2003
#cBriefings in Bioinformatics
#index762392
#% 
#!
  
#*Tuberculosis Vaccine Design: Influence of the Completed Genome Sequence.
#@Donna L. Montgomery
#t2000
#cBriefings in Bioinformatics
#index762393
#% 
#!
  
#*Plant Genome Databases: From References to Inference Tools.
#@Jo L. Dicks
#t2000
#cBriefings in Bioinformatics
#index762394
#% 
#!
  
#*Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis.
#@Sean D. Mooney
#t2005
#cBriefings in Bioinformatics
#index762395
#% 
#!
  
#*Phenotypic Data in FlyBase.
#@Robert L. Scot Drysdale
#t2001
#cBriefings in Bioinformatics
#index762396
#% 
#!
  
#*Linkage disequilibrium for different scales and applications.
#@Jakob C. Mueller
#t2004
#cBriefings in Bioinformatics
#index762397
#% 
#!
  
#*The computational challenges of applying comparative-based computational methods to whole genomes.
#@Inna Dubchak,Lior Pachter
#t2002
#cBriefings in Bioinformatics
#index762398
#% 
#!
  
#*Sensitive Protein Comparisons with Profiles and Hidden Markov Models.
#@Kay Hofmann
#t2000
#cBriefings in Bioinformatics
#index762399
#% 
#!
  
#*Information retrieval and knowledge discovery utilising a biomedical Semantic Web.
#@Sougata Mukherjea
#t2005
#cBriefings in Bioinformatics
#index762400
#% 
#!
  
#*Saccharomyces genome database: Underlying principles and organisation.
#@Selina S. Dwight,Rama Balakrishnan,Karen R. Christie,Maria C. Costanzo,Kara Dolinski,Stacia R. Engel,Becket Feierbach,Dianna G. Fisk,Jodi E. Hirschman,Eurie L. Hong,Laurie Issel-Tarver,Robert S. Nash,Anand Sethuraman,Barry Starr,Chandra L. Theesfeld,Rey Andrada,Gail Binkley,Qing Dong,Christopher Lane,Mark Schroeder,Shuai Weng,David Botstein,J. Michael Cherry
#t2004
#cBriefings in Bioinformatics
#index762401
#% 
#!
  
#*Multiple Sequence Alignment - The Gateway to Further Analysis.
#@Lisa J. Mullan
#t2002
#cBriefings in Bioinformatics
#index762402
#% 
#!
  
#*Predicting Protein Subcellular Localisation From Amino Acid Sequence Information.
#@Olof Emanuelsson
#t2002
#cBriefings in Bioinformatics
#index762403
#% 
#!
  
#*Protein.3D Structural Data - Where It Is, and Why We Need It.
#@Lisa J. Mullan
#t2002
#cBriefings in Bioinformatics
#index762404
#% 
#!
  
#*Allelic Association and Disease Mapping.
#@Sarah Ennis,Nikolas Maniatis,Andrew Collins
#t2001
#cBriefings in Bioinformatics
#index762405
#% 
#!
  
#*Challenges and prospects in the analysis of large-scale gene expression data.
#@Jan Ihmels,Sven Bergmann
#t2004
#cBriefings in Bioinformatics
#index762406
#% 
#!
  
#*Computational knowledge integration in biopharmaceutical research.
#@David Ficenec,Mark Osborne,Joël R. Pradines,Daniel R. Richards,Ramon M. Felciano,Raymond J. Cho,Richard O. Chen,Ted Liefeld,James Owen,Alan Ruttenberg,Christian Reich,Joseph Horvath,Tim Clark
#t2003
#cBriefings in Bioinformatics
#index762407
#% 
#!
  
#*Penalized feature selection and classification in bioinformatics.
#@Shuangge Ma,Jian Huang
#t2008
#cBriefings in Bioinformatics
#index762408
#% 
#!
  
#*Tutorial section: Biological Sequence Databases.
#@Lisa J. Mullan
#t2003
#cBriefings in Bioinformatics
#index762409
#% 
#!
  
#*Mathematical models of cell cycle regulation.
#@Hendrik Fuß,Werner Dubitzky,C. Stephen Downes,Mary Jo Kurth
#t2005
#cBriefings in Bioinformatics
#index762410
#% 
#!
  
#*Software review: Shopping in the genome market with EnsMart.
#@Don Gilbert
#t2003
#cBriefings in Bioinformatics
#index762411
#% 
#!
  
#*Tutorial section: Hydropathy - A window on the evasion of water.
#@Lisa J. Mullan
#t2003
#cBriefings in Bioinformatics
#index762412
#% 
#!
  
#*Biomolecular Interaction Network Database.
#@Don Gilbert
#t2005
#cBriefings in Bioinformatics
#index762413
#% 
#!
  
#*Tutorial section: Domains and motifs - proteins in bite-sized chunks.
#@Lisa J. Mullan
#t2004
#cBriefings in Bioinformatics
#index762414
#% 
#!
  
#*News section.
#@Daniel S. Gonzalez
#t2002
#cBriefings in Bioinformatics
#index762415
#% 
#!
  
#*Jemboss reloaded.
#@Lisa J. Mullan
#t2004
#cBriefings in Bioinformatics
#index762416
#% 
#!
  
#*News Section.
#@Daniel S. Gonzalez
#t2002
#cBriefings in Bioinformatics
#index762417
#% 
#!
  
#*'We are gathered here today' - EST cluster databases.
#@Lisa J. Mullan
#t2004
#cBriefings in Bioinformatics
#index762418
#% 
#!
  
#*News Section.
#@Daniel S. Gonzalez
#t2003
#cBriefings in Bioinformatics
#index762419
#% 
#!
  
#*Genomes, genomes everywhere - but where to browse?
#@Lisa J. Mullan
#t2004
#cBriefings in Bioinformatics
#index762420
#% 
#!
  
#*News section.
#@Daniel S. Gonzalez
#t2003
#cBriefings in Bioinformatics
#index762421
#% 
#!
  
#*Short EMBOSS User Guide.
#@Lisa J. Mullan,Alan J. Bleasby
#t2002
#cBriefings in Bioinformatics
#index762422
#% 
#!
  
#*News section.
#@Paul Grosu,Eitan Rubin,Jaime Prilusky,Lakshmanan Iyer
#t2004
#cBriefings in Bioinformatics
#index762423
#% 
#!
  
#*BLAST and Go?
#@Lisa J. Mullan,G. W. Williams
#t2002
#cBriefings in Bioinformatics
#index762424
#% 
#!
  
#*From Molecular Activities and Processes to Biological Function.
#@Jacques van Helden,Avi Naim,Christian Lemer,Renato Mancuso,Matthew Eldridge,Shoshana J. Wodak
#t2001
#cBriefings in Bioinformatics
#index762425
#% 
#!
  
#*Software Review Introduction.
#@Richard J. Mural
#t2000
#cBriefings in Bioinformatics
#index762426
#% 
#!
  
#*Editorial: The informatics of post-translational modification and its implications for systems biology.
#@Charlie Hodgman
#t2004
#cBriefings in Bioinformatics
#index762427
#% 
#!
  
#*Software Review.
#@Richard J. Mural
#t2000
#cBriefings in Bioinformatics
#index762428
#% 
#!
  
#*Computational Models of Cells and Tissues: Machines, Agents and Fungal Infection.
#@Mike Holcombe
#t2001
#cBriefings in Bioinformatics
#index762429
#% 
#!
  
#*Can Correlated Mutations in Protein Domain Families Be Used for Protein Design?
#@Sylvia B. Nagl
#t2001
#cBriefings in Bioinformatics
#index762430
#% 
#!
  
#*Statistical software for gene mapping by admixture linkage disequilibrium.
#@Giovanni Montana,Clive J. Hoggart
#t2007
#cBriefings in Bioinformatics
#index762431
#% 
#!
  
#*Knowledge Integration in Biomedicine: Technology and Community.
#@Tim Clark
#t2007
#cBriefings in Bioinformatics
#index762432
#% 
#!
  
#*InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites
#@Nicola J. Mulder,Rolf Apweiler,Terri K. Attwood,Amos Bairoch,Alex Bateman,David Binns,Margaret Biswas,Paul Bradley,Peer Bork,Philipp Bucher,Richard R. Copley,Emmanuel Courcelle,Richard Durbin,Laurent Falquet,Wolfgang Fleischmann,Jérôme Gouzy,Sam Griffiths-Jones,Daniel H. Haft,Henning Hermjakob,Nicolas Hulo,Daniel Kahn,Alexander Kanapin,Maria Krestyaninova,Rodrigo Lopez,Ivica Letunic,Sue Orchard,Marco Pagni,David Peyruc,Chris P. Ponting,Florence Servant,Christian J. A. Sigrist
#t2002
#cBriefings in Bioinformatics
#index762433
#% 
#!
  
#*Evolution of web services in bioinformatics.
#@Pieter B. T. Neerincx,Jack A. M. Leunissen
#t2005
#cBriefings in Bioinformatics
#index762434
#% 
#!
  
#*High-quality Protein Knowledge Resource: SWISS-PROT and TrEMBL.
#@Claire O'Donovan,Maria Jesus Martin,Alexandre Gattiker,Elisabeth Gasteiger,Amos Bairoch,Rolf Apweiler
#t2002
#cBriefings in Bioinformatics
#index762435
#% 
#!
  
#*Emboss opens up sequence analysis.
#@Sue A. Olson
#t2002
#cBriefings in Bioinformatics
#index762436
#% 
#!
  
#*Phylogenetic-evolutionary Approaches to Bioinformatics.
#@Mike Pagel
#t2000
#cBriefings in Bioinformatics
#index762437
#% 
#!
  
#*Making Sense of Score Statistics for Sequence Alignments.
#@Marco Pagni,C. Victor Jongeneel
#t2001
#cBriefings in Bioinformatics
#index762438
#% 
#!
  
#*Editorial: Bioinformatics and Economics.
#@J. Parsons
#t2002
#cBriefings in Bioinformatics
#index762439
#% 
#!
  
#*Methods for Pattern Discovery in Unaligned Biological Sequences.
#@Giulio Pavesi,Giancarlo Mauri,Graziano Pesole
#t2001
#cBriefings in Bioinformatics
#index762440
#% 
#!
  
#*In silico representation and discovery of transcription factor binding sites.
#@Giulio Pavesi,Giancarlo Mauri,Graziano Pesole
#t2004
#cBriefings in Bioinformatics
#index762441
#% 
#!
  
#*The Untranslated Regions of Eukaryotic MRNAs: Structure, Function, Evolution and Bioinformatic Tools for Their Analysis.
#@Graziano Pesole,Giorgio Grillo,Alessandra Larizza,Sabino Liuni
#t2000
#cBriefings in Bioinformatics
#index762442
#% 
#!
  
#*Issues in Predicting Protein Function From Sequence.
#@Chris P. Ponting
#t2001
#cBriefings in Bioinformatics
#index762443
#% 
#!
  
#*Comparative genome assembly.
#@Mihai Pop,Adam M. Phillippy,Arthur L. Delcher,Steven Salzberg
#t2004
#cBriefings in Bioinformatics
#index762444
#% 
#!
  
#*Modelling the dynamics of biosystems.
#@Corrado Priami,Paola Quaglia
#t2004
#cBriefings in Bioinformatics
#index762445
#% 
#!
  
#*Epitope Scanning Using Virtual Matrix-based Algorithms.
#@Laura Raddrizzani,Jürgen Hammer
#t2000
#cBriefings in Bioinformatics
#index762446
#% 
#!
  
#*Phase4: Automatic Evaluation of Database Search Methods.
#@Marc Rehmsmeier
#t2002
#cBriefings in Bioinformatics
#index762447
#% 
#!
  
#*Current Progress in computational metabolomics.
#@David S. Wishart
#t2007
#cBriefings in Bioinformatics
#index762448
#% 
#!
  
#*High-throughput modeling and analysis of protein structural dynamics.
#@Xiong Liu,Hassan A. Karimi
#t2007
#cBriefings in Bioinformatics
#index762449
#% 
#!
  
#*Computational analysis of mutation spectra.
#@Igor B. Rogozin,Vladimir N. Babenko,Luciano Milanesi,Youri I. Pavlov
#t2003
#cBriefings in Bioinformatics
#index762450
#% 
#!
  
#*Computer Prediction of Sites Associated with Various Elements of the Nuclear Matrix.
#@Igor B. Rogozin,Galina V. Glazko,M. V. Glazkov
#t2000
#cBriefings in Bioinformatics
#index762451
#% 
#!
  
#*Prediction and Phylogenetic Analysis of Mammalian Short Interspersed Elements (SINEs).
#@Igor B. Rogozin,V. I. Mayorov,M. V. Lavrentieva,Luciano Milanesi,L. R. Adkison
#t2000
#cBriefings in Bioinformatics
#index762452
#% 
#!
  
#*Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes.
#@Igor B. Rogozin,Kira S. Makarova,Yuri I. Wolf,Eugene V. Koonin
#t2004
#cBriefings in Bioinformatics
#index762453
#% 
#!
  
#*Analysis of evolution of exon-intron structure of eukaryotic genes.
#@Igor B. Rogozin,Alexander V. Sverdlov,Vladimir N. Babenko,Eugene V. Koonin
#t2005
#cBriefings in Bioinformatics
#index762454
#% 
#!
  
#*The Made-In-Israel Bioinformatics Portal.
#@Yossi Rosenberg,Ron Unger
#t2004
#cBriefings in Bioinformatics
#index762455
#% 
#!
  
#*Tutorial section: Designing microarray oligonucleotide probes.
#@Roslin Russell
#t2003
#cBriefings in Bioinformatics
#index762456
#% 
#!
  
#*RNAi as a bioinformatics consumer.
#@Ravi Sachidanandam
#t2005
#cBriefings in Bioinformatics
#index762457
#% 
#!
  
#*Database Searching with DNA and Protein Sequences: An Introduction.
#@Clare Sansom
#t2000
#cBriefings in Bioinformatics
#index762458
#% 
#!
  
#*Current Approaches to Whole Genome Phylogenetic Analysis.
#@George Savva,Jo L. Dicks,Ian N. Roberts
#t2003
#cBriefings in Bioinformatics
#index762459
#% 
#!
  
#*The next generation of literature analysis: Integration of genomic analysis into text mining.
#@Matthias Scherf,Anton Epple,Thomas Werner
#t2005
#cBriefings in Bioinformatics
#index762460
#% 
#!
  
#*From masking repeats to identifying functional repeats in the mouse transcriptome.
#@Christian Schönbach
#t2004
#cBriefings in Bioinformatics
#index762461
#% 
#!
  
#*Data Warehousing in Molecular Biology.
#@Christian Schönbach,P. Kowalski-Saunders,Vladimir Brusic
#t2000
#cBriefings in Bioinformatics
#index762462
#% 
#!
  
#*ProDom: Automated Clustering of Homologous Domains.
#@Florence Servant,Catherine Bru,Sébastien Carrère,Emmanuel Courcelle,Jérôme Gouzy,David Peyruc,Daniel Kahn
#t2002
#cBriefings in Bioinformatics
#index762463
#% 
#!
  
#*Hairpins in bookstacks: Information retrieval from biomedical text.
#@Hagit Shatkay
#t2005
#cBriefings in Bioinformatics
#index762464
#% 
#!
  
#*Analysis of Large-scale Gene Expression Data.
#@Gavin Sherlock
#t2001
#cBriefings in Bioinformatics
#index762465
#% 
#!
  
#*PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors.
#@Christian J. A. Sigrist,Lorenzo Cerutti,Nicolas Hulo,Alexandre Gattiker,Laurent Falquet,Marco Pagni,Amos Bairoch,Philipp Bucher
#t2002
#cBriefings in Bioinformatics
#index762466
#% 
#!
  
#*Extraction of biological interaction networks from scientific literature.
#@Andre Skusa,Alexander Rüegg,Jacob Köhler
#t2005
#cBriefings in Bioinformatics
#index762467
#% 
#!
  
#*Comparative Genomics Tools Applied to Bioterrorism Defence.
#@Tom Slezak,Tom Kuczmarski,Linda M. Ott,Clinton Torres,Dan Medeiros,Jason Smith,Brian Truitt,Nisha Mulakken,Marisa Lam,Elizabeth A. Vitalis,Adam Zemla,Carol L. Ecale Zhou,Shea Gardner
#t2003
#cBriefings in Bioinformatics
#index762468
#% 
#!
  
#*Text mining and ontologies in biomedicine: Making sense of raw text.
#@Irena Spasic,Sophia Ananiadou,John McNaught,Anand Kumar
#t2005
#cBriefings in Bioinformatics
#index762469
#% 
#!
  
#*Editorial: The Future of Publishing Microarray Data.
#@Paul T. Spellman
#t2001
#cBriefings in Bioinformatics
#index762470
#% 
#!
  
#*Software Review.
#@Sylvia Spengler
#t2000
#cBriefings in Bioinformatics
#index762471
#% 
#!
  
#*Modelling protein functional domains in signal transduction using Maude.
#@M. G. Sriram
#t2003
#cBriefings in Bioinformatics
#index762472
#% 
#!
  
#*Computational aspects of host-parasite phylogenies.
#@Jamie Stevens
#t2004
#cBriefings in Bioinformatics
#index762473
#% 
#!
  
#*Ontology-based Knowledge Representation for Bioinformatics.
#@Robert Stevens,Carole A. Goble,Sean Bechhofer
#t2000
#cBriefings in Bioinformatics
#index762474
#% 
#!
  
#*Wrapping and Interoperating Bioinformatics Resources Using CORBA.
#@Robert Stevens,Crispin Miller
#t2000
#cBriefings in Bioinformatics
#index762475
#% 
#!
  
#*Open Source Software Meets Gene Expression.
#@Jason E. Stewart,Harry Mangalam,Jiaye Zhou
#t2001
#cBriefings in Bioinformatics
#index762476
#% 
#!
  
#*Bioinformatics for Venom and Toxin Sciences.
#@Paul T. J. Tan,Asif M. Khan,Vladimir Brusic
#t2003
#cBriefings in Bioinformatics
#index762477
#% 
#!
  
#*Prediction of Exact Boundaries of Exons.
#@Thangavel Alphonse Thanaraj,Alan J. Robinson
#t2000
#cBriefings in Bioinformatics
#index762478
#% 
#!
  
#*Editorial.
#@Thangavel Alphonse Thanaraj,Alan J. Robinson,J. Muila,Jean-Jack M. Riethoven
#t2000
#cBriefings in Bioinformatics
#index762479
#% 
#!
  
#*Software review: Analysis for free: Comparing programs for sequence analysis.
#@Helge-Friedrich Tippmann
#t2004
#cBriefings in Bioinformatics
#index762480
#% 
#!
  
#*Microarray Probe Selection Strategies.
#@Stefan Tomiuk,Kay Hofmann
#t2001
#cBriefings in Bioinformatics
#index762481
#% 
#!
  
#*On the Parallelisation of Bioinformatics Applications.
#@Oswaldo Trelles
#t2001
#cBriefings in Bioinformatics
#index762482
#% 
#!
  
#*Putting microarrays in a context: Integrated analysis of diverse biological data.
#@Olga G. Troyanskaya
#t2005
#cBriefings in Bioinformatics
#index762483
#% 
#!
  
#*Signal transduction-related bioinformatics services.
#@Mauno Vihinen
#t2003
#cBriefings in Bioinformatics
#index762484
#% 
#!
  
#*Online tools to support literature-based discovery in the life sciences.
#@Marc Weeber,Jan A. Kors,Barend Mons
#t2005
#cBriefings in Bioinformatics
#index762485
#% 
#!
  
#*Identification and Functional Modelling of DNA Sequence Elements of Transcription.
#@Thomas Werner
#t2000
#cBriefings in Bioinformatics
#index762486
#% 
#!
  
#*The State of the Art of Mammalian Promoter Recognition.
#@Thomas Werner
#t2003
#cBriefings in Bioinformatics
#index762487
#% 
#!
  
#*Genome Sequence Comparisons: Hurdles in the Fast Lane to Functional Genomics.
#@Thomas Wiehe,Roderic Guigó,Webb Miller
#t2000
#cBriefings in Bioinformatics
#index762488
#% 
#!
  
#*BioMOBY: An Open Source Biological Web Services Proposal.
#@Mark D. Wilkinson,Matthew Links
#t2002
#cBriefings in Bioinformatics
#index762489
#% 
#!
  
#*The role of quantitative structure-activity relationships (QSAR) in biomolecular discovery.
#@David A. Winkler
#t2002
#cBriefings in Bioinformatics
#index762490
#% 
#!
  
#*Analysis and Comparison of Metabolic Pathway Databases.
#@Ulrike Wittig,Ann De Beuckelaer
#t2001
#cBriefings in Bioinformatics
#index762491
#% 
#!
  
#*Proteomic Databases and Software on the Web.
#@Jérôme Wojcik,Vincent Schächter
#t2000
#cBriefings in Bioinformatics
#index762492
#% 
#!
  
#*Visualising Gene Expression in Its Metabolic Context.
#@Detlef Wolf,Christopher P. Gray,Antoine de Saizieu
#t2000
#cBriefings in Bioinformatics
#index762493
#% 
#!
  
#*Systems Biology: the Reincarnation of Systems Theory Applied in Biology?.
#@Olaf Wolkenhauer
#t2001
#cBriefings in Bioinformatics
#index762494
#% 
#!
  
#*Technologies for Integrating Biological Data.
#@L. Wong
#t2002
#cBriefings in Bioinformatics
#index762495
#% 
#!
  
#*Biological applications of support vector machines.
#@Zheng Rong Yang
#t2004
#cBriefings in Bioinformatics
#index762496
#% 
#!
  
#*Analysis of CDNA Microarray Images.
#@Yee Hwa Yang,Michael J. Buckley,Terence P. Speed
#t2001
#cBriefings in Bioinformatics
#index762497
#% 
#!
  
#*An Approach to Modelling in Immunology.
#@Andrew Yates,C. C. W. Chan,R. E. Callard,Andrew J. T. George,Jaroslav Stark
#t2001
#cBriefings in Bioinformatics
#index762498
#% 
#!
  
#*Bioinformatics Training in the USA.
#@Marion M. Zatz
#t2002
#cBriefings in Bioinformatics
#index762499
#% 
#!
  
#*Discriminant Analysis and Its Application in DNA Sequence Motif Recognition.
#@Michael Q. Zhang
#t2000
#cBriefings in Bioinformatics
#index762500
#% 
#!
  
#*Integrative biology - the way forward.
#@Charlie Hodgman
#t2007
#cBriefings in Bioinformatics
#index762501
#% 
#!
  
#*Analytic approaches to twin data using structural equation models.
#@F. V. Rijsdijk,Pak Chung Sham
#t2002
#cBriefings in Bioinformatics
#index762502
#% 
#!
  
#*Inferring network interactions within a cell.
#@Gregory W. Carter
#t2005
#cBriefings in Bioinformatics
#index762503
#% 
#!
  
#*A Bayesian method for analysing spotted microarray data.
#@Colin D. Meiklejohn,Jeffrey P. Townsend
#t2005
#cBriefings in Bioinformatics
#index762504
#% 
#!
  
#*WinPop 2.5: Software for representing population genetics phenomena.
#@Paulo A. S. Nuin
#t2005
#cBriefings in Bioinformatics
#index762505
#% 
#!
  
#*Evaluation of biomedical text-mining systems: Lessons learned from information retrieval.
#@William R. Hersh
#t2005
#cBriefings in Bioinformatics
#index762506
#% 
#!
  
#*Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data.
#@Paul C. Boutros,Allan B. Okey
#t2005
#cBriefings in Bioinformatics
#index762507
#% 
#!
  
#*What makes a gene name? Named entity recognition in the biomedical literature.
#@Ulf Leser,Jörg Hakenberg
#t2005
#cBriefings in Bioinformatics
#index762508
#% 
#!
  
#*Editorial.
#@Martin J. Bishop
#t2005
#cBriefings in Bioinformatics
#index762509
#% 
#!
  
#*Software agents in molecular computational biology.
#@John W. Keele,James E. Wray
#t2005
#cBriefings in Bioinformatics
#index762510
#% 
#!
  
#*Detecting horizontal gene transfer with T-REX and RHOM programs.
#@Zuofeng Li,Li Wang,Yang Zhong
#t2005
#cBriefings in Bioinformatics
#index762511
#% 
#!
  
#*Normalization and quantification of differential expression in gene expression microarrays.
#@Christine Steinhoff,Martin Vingron
#t2006
#cBriefings in Bioinformatics
#index762512
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2006
#cBriefings in Bioinformatics
#index762513
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2006
#cBriefings in Bioinformatics
#index762514
#% 
#!
  
#*Bioinformatics of alternative splicing and its regulation.
#@Liliana Florea
#t2006
#cBriefings in Bioinformatics
#index762515
#% 
#!
  
#*Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.
#@Natal A. W. van Riel
#t2006
#cBriefings in Bioinformatics
#index762516
#% 
#!
  
#*Annual Progress in Bioinformatics 2006.
#@Russ B. Altman
#t2006
#cBriefings in Bioinformatics
#index762517
#% 
#!
  
#*A new publisher for Briefings in Bioinformatics.
#@Claire Saxby
#t2006
#cBriefings in Bioinformatics
#index762518
#% 
#!
  
#*Protein interactions and disease: computational approaches to uncover the etiology of diseases.
#@Maricel G. Kann
#t2007
#cBriefings in Bioinformatics
#index762519
#% 
#!
  
#*Navigating the HapMap.
#@Michael R. Barnes
#t2006
#cBriefings in Bioinformatics
#index762520
#% 
#!
  
#*Metabolomics and the challenges ahead.
#@Pedro Mendes
#t2006
#cBriefings in Bioinformatics
#index762521
#% 
#!
  
#*Resources for integrative systems biology: from data through databases to networks and dynamic system models.
#@Aylwin Ng,Borisas Bursteinas,Qiong Gao,Ewan Mollison,Marketa Zvelebil
#t2006
#cBriefings in Bioinformatics
#index762522
#% 
#!
  
#*Flux balance analysis in the era of metabolomics.
#@Jong Min Lee,Erwin P. Gianchandani,Jason A. Papin
#t2006
#cBriefings in Bioinformatics
#index762523
#% 
#!
  
#*Metabolomics Standards Workshop and the development of international standards for reporting metabolomics experimental results.
#@Arthur L. Castle,Oliver Fiehn,Rima Kaddurah-Daouk,John C. Lindon
#t2006
#cBriefings in Bioinformatics
#index762524
#% 
#!
  
#*Representing, storing and accessing molecular interaction data: a review of models and tools.
#@Lena Strömbäck,Vaida Jakoniene,He Tan,Patrick Lambrix
#t2006
#cBriefings in Bioinformatics
#index762525
#% 
#!
  
#*Computational methodologies for modelling, analysis and simulation of signalling networks.
#@David R. Gilbert,Hendrik Fuß,Xu Gu,Richard J. Orton,Steve Robinson,Vladislav Vyshemirsky,Mary Jo Kurth,C. Stephen Downes,Werner Dubitzky
#t2006
#cBriefings in Bioinformatics
#index762526
#% 
#!
  
#*Automated protein function prediction - the genomic challenge.
#@Iddo Friedberg
#t2006
#cBriefings in Bioinformatics
#index762527
#% 
#!
  
#*Statistical significance in biological sequence analysis.
#@Alexander Yu. Mitrophanov,Mark Borodovsky
#t2006
#cBriefings in Bioinformatics
#index762528
#% 
#!
  
#*Metabolomics technology and bioinformatics.
#@Vladimir Shulaev
#t2006
#cBriefings in Bioinformatics
#index762529
#% 
#!
  
#*Computational aspects of systematic biology.
#@Timothy G. Lilburn,Scott H. Harrison,James R. Cole,George M. Garrity
#t2006
#cBriefings in Bioinformatics
#index762530
#% 
#!
  
#*Biological applications of the theory of birth-and-death processes.
#@Artem S. Novozhilov,Georgy P. Karev,Eugene V. Koonin
#t2006
#cBriefings in Bioinformatics
#index762531
#% 
#!
  
#*Statistical methods in genetics.
#@Giovanni Montana
#t2006
#cBriefings in Bioinformatics
#index762532
#% 
#!
  
#*Circumventing the cut-off for enrichment analysis.
#@Eitan Rubin
#t2006
#cBriefings in Bioinformatics
#index762533
#% 
#!
  
#*Mining literature for systems biology.
#@Phoebe M. Roberts
#t2006
#cBriefings in Bioinformatics
#index762534
#% 
#!
  
#*Propagating uncertainty in microarray data analysis.
#@Magnus Rattray,Xuejun Liu,Guido Sanguinetti,Marta Milo,Neil D. Lawrence
#t2006
#cBriefings in Bioinformatics
#index762535
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2006
#cBriefings in Bioinformatics
#index762536
#% 
#!
  
#*Understanding the computational methodologies of systems biology.
#@Werner Dubitzky
#t2006
#cBriefings in Bioinformatics
#index762537
#% 
#!
  
#*Advanced computing for systems biology.
#@Kevin Burrage,Lindsay Hood,Mark A. Ragan
#t2006
#cBriefings in Bioinformatics
#index762538
#% 
#!
  
#*Strategies for dealing with incomplete information in the modeling of molecular interaction networks.
#@Hidde de Jong,Delphine Ropers
#t2006
#cBriefings in Bioinformatics
#index762539
#% 
#!
  
#*Studying statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the eukaryotic genomes.
#@Irina I. Abnizova,Walter R. Gilks
#t2006
#cBriefings in Bioinformatics
#index762540
#% 
#!
  
#*The Life Sciences Semantic Web is Full of Creeps!
#@Benjamin M. Good,Mark D. Wilkinson
#t2006
#cBriefings in Bioinformatics
#index762541
#% 
#!
  
#*Review: On the analysis and interpretation of correlations in metabolomic data.
#@Ralf Steuer
#t2006
#cBriefings in Bioinformatics
#index762542
#% 
#!
  
#*Application of wavelet-based tools to study the dynamics of biological processes.
#@Alexey N. Pavlov,Valeri A. Makarov,Erik Mosekilde,Olga V. Sosnovtseva
#t2006
#cBriefings in Bioinformatics
#index762543
#% 
#!
  
#*Machine learning in bioinformatics.
#@Pedro Larrañaga,Borja Calvo,Roberto Santana,Concha Bielza,Josu Galdiano,Iñaki Inza,José Antonio Lozano,Rubén Armañanzas,Guzmán Santafé,Aritz Pérez Martínez,Victor Robles
#t2006
#cBriefings in Bioinformatics
#index762544
#% 
#!
  
#*List mania: interpreting microarray results with the L2L server.
#@Eitan Rubin
#t2006
#cBriefings in Bioinformatics
#index762545
#% 
#!
  
#*Advances in the Exon-Intron Database (EID).
#@Valery Shepelev,Alexei Fedorov
#t2006
#cBriefings in Bioinformatics
#index762546
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2006
#cBriefings in Bioinformatics
#index762547
#% 
#!
  
#*Estimation and control of multiple testing error rates for microarray studies.
#@Stan Pounds
#t2006
#cBriefings in Bioinformatics
#index762548
#% 
#!
  
#*Bio-ontologies: current trends and future directions.
#@Olivier Bodenreider,Robert Stevens
#t2006
#cBriefings in Bioinformatics
#index762549
#% 
#!
  
#*Graph-based methods for analysing networks in cell biology.
#@Tero Aittokallio,Benno Schwikowski
#t2006
#cBriefings in Bioinformatics
#index762550
#% 
#!
  
#*Open source tools and toolkits for bioinformatics: significance, and where are we?
#@Jason E. Stajich,Hilmar Lapp
#t2006
#cBriefings in Bioinformatics
#index762551
#% 
#!
  
#*Editorial.
#@Martin J. Bishop
#t2007
#cBriefings in Bioinformatics
#index762552
#% 
#!
  
#*The WWWH of remote homolog detection: The state of the art.
#@Piero Fariselli,Ivan Rossi,Emidio Capriotti,Rita Casadio
#t2007
#cBriefings in Bioinformatics
#index762553
#% 
#!
  
#*Forensic DNA and bioinformatics.
#@Lucia Bianchi,Pietro Liò
#t2007
#cBriefings in Bioinformatics
#index762554
#% 
#!
  
#*The growth of bioinformatics.
#@Vladimir Brusic
#t2007
#cBriefings in Bioinformatics
#index762555
#% 
#!
  
#*Statistically designing microarrays and microarray experiments to enhance sensitivity and specificity.
#@Jason C. Hsu,Jane Chang,Tao Wang,Eiríkur Steingrímsson,Magnús Karl Magnússon,Kristin Bergsteinsdottir
#t2007
#cBriefings in Bioinformatics
#index762556
#% 
#!
  
#*A hitchhiker's guide to expressed sequence tag (EST) analysis.
#@Shivashankar H. Nagaraj,Robin B. Gasser,Shoba Ranganathan
#t2007
#cBriefings in Bioinformatics
#index762557
#% 
#!
  
#*Normal Mode Analysis Theoretical and Applications to Biological and Chemical Systems.
#@Samy Meroueh
#t2007
#cBriefings in Bioinformatics
#index762558
#% 
#!
  
#*Enrichment analysis in high-throughput genomics - accounting for dependency in the NULL.
#@David L. Gold,Kevin R. Coombes,Jing Wang,Bani K. Mallick
#t2007
#cBriefings in Bioinformatics
#index762559
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2007
#cBriefings in Bioinformatics
#index762560
#% 
#!
  
#*Bayesian methods in bioinformatics and computational systems biology.
#@Darren J. Wilkinson
#t2007
#cBriefings in Bioinformatics
#index762561
#% 
#!
  
#*Methods and protocols for prediction of immunogenic epitopes.
#@Joo Chuan Tong,Tin Wee Tan,Shoba Ranganathan
#t2007
#cBriefings in Bioinformatics
#index762562
#% 
#!
  
#*Evolving research trends in bioinformatics.
#@Carolina Perez-Iratxeta,Miguel A. Andrade-Navarro,Jonathan D. Wren
#t2007
#cBriefings in Bioinformatics
#index762563
#% 
#!
  
#*Abstracts.
#@I. King Jordan
#t2007
#cBriefings in Bioinformatics
#index762564
#% 
#!
  
#*HCOP: a searchable database of human orthology predictions.
#@Tina A. Eyre,Mathew W. Wright,Michael J. Lush,Elspeth A. Bruford
#t2007
#cBriefings in Bioinformatics
#index762565
#% 
#!
  
#*Partial least squares: a versatile tool for the analysis of high-dimensional genomic data.
#@Anne-Laure Boulesteix,Korbinian Strimmer
#t2007
#cBriefings in Bioinformatics
#index762566
#% 
#!
  
#*Petri net modelling of biological networks.
#@Claudine Chaouiya
#t2007
#cBriefings in Bioinformatics
#index762567
#% 
#!
  
#*Improving life sciences information retrieval using semantic web technology.
#@Dennis Quan
#t2007
#cBriefings in Bioinformatics
#index762568
#% 
#!
  
#*Pairwise sequence alignment - it's all about us!
#@Lisa J. Mullan
#t2006
#cBriefings in Bioinformatics
#index762569
#% 
#!
  
#*Informatics challenges in structured RNA.
#@Alain Laederach
#t2007
#cBriefings in Bioinformatics
#index762570
#% 
#!
  
#*Dynamical roles of biological regulatory circuits.
#@Denis Thieffry
#t2007
#cBriefings in Bioinformatics
#index762571
#% 
#!
  
#*Alzforum and SWAN: the present and future of scientific web communities.
#@Tim Clark,June Kinoshita
#t2007
#cBriefings in Bioinformatics
#index762572
#% 
#!
  
#*Agents in bioinformatics, computational and systems biology.
#@Emanuela Merelli,Giuliano Armano,Nicola Cannata,Flavio Corradini,Mark d'Inverno,Andreas Doms,Phillip W. Lord,Andrew Martin,Luciano Milanesi,Steffen Möller,Michael Schroeder,Michael Luck
#t2007
#cBriefings in Bioinformatics
#index762573
#% 
#!
  
#*BIB's first impact factor is 24.37.
#@Martin Bishop,Claire Bird
#t2007
#cBriefings in Bioinformatics
#index762574
#% 
#!
  
#*Editorial.
#@M. J. Bishop
#t2007
#cBriefings in Bioinformatics
#index762575
#% 
#!
  
#*Making Decisions for Structural Genomics.
#@Ana P. C. Rodrigues,Roderick E. Hubbard
#t2003
#cBriefings in Bioinformatics
#index762576
#% 
#!
  
#*BioManager: the use of a bioinformatics web application as a teaching tool in undergraduate bioinformatics training.
#@Sonia Cattley,Jonathan W. Arthur
#t2007
#cBriefings in Bioinformatics
#index762577
#% 
#!
  
#*Knowledge networks in the age of the Semantic Web.
#@Eric Neumann,Larry Prusak
#t2007
#cBriefings in Bioinformatics
#index762578
#% 
#!
  
#*An integrative approach to understanding mechanosensation.
#@Christopher C. Poirier,Pablo A. Iglesias
#t2007
#cBriefings in Bioinformatics
#index762579
#% 
#!
  
#*Towards a calculus of biomolecular complexes at equilibrium.
#@Eric Mjolsness
#t2007
#cBriefings in Bioinformatics
#index762580
#% 
#!
  
#*Discovering and detecting transposable elements in genome sequences.
#@Casey M. Bergman,Hadi Quesneville
#t2007
#cBriefings in Bioinformatics
#index762581
#% 
#!
  
#*Boca: an open-source RDF store for building Semantic Web applications.
#@Lee Feigenbaum,Sean Martin,Matthew N. Roy,Benjamin Szekely,Wing C. Yung
#t2007
#cBriefings in Bioinformatics
#index762582
#% 
#!
  
#*Informatics in neuroscience.
#@Leon French,Paul Pavlidis
#t2007
#cBriefings in Bioinformatics
#index762583
#% 
#!
  
#*Knowledge Integration in Biomedicine: Technology and Community.
#@Tim Clark
#t2007
#cBriefings in Bioinformatics
#index762584
#% 
#!
  
#*A microarray analysis for differential gene expression in the soybean genome using Bioconductor and R.
#@W. Gregory Alvord,Jean A. Roayaei,Octavio A. Quiñones,Katherine T. Schneider
#t2007
#cBriefings in Bioinformatics
#index762585
#% 
#!
  
#*Stochastic Modelling for Systems Biology: Darren J. Wilkinson.
#@Russell Schwartz
#t2007
#cBriefings in Bioinformatics
#index762586
#% 
#!
  
#*Modelling and simulation techniques for membrane biology.
#@Kevin Burrage,John Hancock,André Leier,Dan V. Nicolau Jr.
#t2007
#cBriefings in Bioinformatics
#index762587
#% 
#!
  
#*Proteomics for Biological Discovery.: Edited by Timothy D. Veenstra and John R. Yates III.
#@Giselle M. Knudsen
#t2007
#cBriefings in Bioinformatics
#index762588
#% 
#!
  
#*Combining experiments with multi-cell agent-based modeling to study biological tissue patterning.
#@Bryan C. Thorne,Alexander M. Bailey,Shayn M. Peirce
#t2007
#cBriefings in Bioinformatics
#index762589
#% 
#!
  
#*A practical guide to the art of RNA gene prediction.
#@Irmtraud M. Meyer
#t2007
#cBriefings in Bioinformatics
#index762590
#% 
#!
  
#*Current progress in network research: toward reference networks for key model organisms.
#@Balaji S. Srinivasan,Nigam H. Shah,Jason Flannick,Eduardo Abeliuk,Antal F. Novak,Serafim Batzoglou
#t2007
#cBriefings in Bioinformatics
#index762591
#% 
#!
  
#*Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes.
#@Matteo Brilli,Renato Fani,Pietro Liò
#t2008
#cBriefings in Bioinformatics
#index762592
#% 
#!
  
#*Extensible open source content management systems and frameworks: a solution for many needs of a bioinformatics group.
#@Sean D. Mooney,Peter H. Baenziger
#t2008
#cBriefings in Bioinformatics
#index762593
#% 
#!
  
#*Correlated substitution analysis and the prediction of amino acid structural contacts.
#@David Stephen Horner,Walter Pirovano,Graziano Pesole
#t2008
#cBriefings in Bioinformatics
#index762594
#% 
#!
  
#*Bioinformatics - From Genomes to Therapies: Edited by Thomas Lengauer.
#@Jihoon Yang
#t2008
#cBriefings in Bioinformatics
#index762595
#% 
#!
  
#*An overview of image-processing methods for Affymetrix GeneChips.
#@Jose M. Arteaga-Salas,Harry Zuzan,William B. Langdon,Graham J. G. Upton,Andrew P. Harrison
#t2008
#cBriefings in Bioinformatics
#index762596
#% 
#!
  
#*Bioinformatics, Genomics, and Proteomics: Getting the Big Picture (Biotechnology in the 21st Century): Ann Finney Batiza.
#@Ann E. Loraine
#t2008
#cBriefings in Bioinformatics
#index762597
#% 
#!
  
#*Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes.
#@Nikolay A. Kolchanov,Tatyana I. Merkulova,Elena V. Ignatieva,Elena A. Ananko,Dmitry Yu. Oshchepkov,Victor G. Levitsky,Gennady V. Vasiliev,Nataly V. Klimova,Vasily M. Merkulov,T. Charles Hodgman
#t2007
#cBriefings in Bioinformatics
#index762598
#% 
#!
  
#*Current trends in computational inference from mass spectrometry-based proteomics.
#@Bobbie-Jo M. Webb-Robertson,William R. Cannon
#t2007
#cBriefings in Bioinformatics
#index762599
#% 
#!
  
#*Handbook of Bioinspired Algorithms and Applications: Edited by Stephan Olariu and Albert Y.
#@Hiram A. Firpi
#t2007
#cBriefings in Bioinformatics
#index762600
#% 
#!
  
#*SenseLab: new developments in disseminating neuroscience information.
#@Chiquito J. Crasto,Luis N. Marenco,Nian Liu,Thomas M. Morse,Kei-Hoi Cheung,Peter C. Lai,Gautam Bahl,Peter Masiar,Hugo Y. K. Lam,Ernest Lim,Huajun Chen,Prakash M. Nadkarni,Michele Migliore,Perry L. Miller,Gordon M. Shepherd
#t2007
#cBriefings in Bioinformatics
#index762601
#% 
#!
  
#*Frontiers of biomedical text mining: current progress.
#@Pierre Zweigenbaum,Dina Demner-Fushman,Hong Yu,Kevin B. Cohen
#t2007
#cBriefings in Bioinformatics
#index762602
#% 
#!
  
#*Using provenance to manage knowledge of experiments.
#@Robert Stevens,Jun Zhao,Carole A. Goble
#t2007
#cBriefings in Bioinformatics
#index762603
#% 
#!
  
#*Current progress in bioinformatics 2007.
#@Russ B. Altman
#t2007
#cBriefings in Bioinformatics
#index762604
#% 
#!
  
#*Biodiversity informatics: organizing and linking information across the spectrum of life.
#@Indra Neil Sarkar
#t2007
#cBriefings in Bioinformatics
#index762605
#% 
#!
  
#*Automation of in-silico data analysis processes through workflow management systems.
#@Paolo Romano
#t2008
#cBriefings in Bioinformatics
#index762606
#% 
#!
  
#*Biobanking for Europe.
#@Martin Yuille,Gert-Jan B. van Ommen,Christian Bréchot,Anne Cambon-Thomsen,Georges Dagher,Ulf Landegren,Jan-Eric Litton,Markus Pasterk,Leena Peltonen,Mike Taussig,H.-Erich Wichmann,Kurt Zatloukal
#t2008
#cBriefings in Bioinformatics
#index762607
#% 
#!
  
#*Classification of mass-spectrometric data in clinical proteomics using learning vector quantization methods.
#@Thomas Villmann,Frank-Michael Schleif,Markus Kostrzewa,Axel Walch,Barbara Hammer
#t2008
#cBriefings in Bioinformatics
#index762608
#% 
#!
  
#*Approaches to dimensionality reduction in proteomic biomarker studies.
#@Melanie Hilario,Alexandros Kalousis
#t2008
#cBriefings in Bioinformatics
#index762609
#% 
#!
  
#*Information quality in proteomics.
#@David Stead,Norman W. Paton,Paolo Missier,Suzanne M. Embury,Cornelia Hedeler,Binling Jin,Alistair J. P. Brown,Alun D. Preece
#t2008
#cBriefings in Bioinformatics
#index762610
#% 
#!
  
#*Algorithms and tools for analysis and management of mass spectrometry data.
#@Pierangelo Veltri
#t2008
#cBriefings in Bioinformatics
#index762611
#% 
#!
  
#*Machine learning methods for predictive proteomics.
#@Annalisa Barla,Giuseppe Jurman,Samantha Riccadonna,Stefano Merler,Marco Chierici,Cesare Furlanello
#t2008
#cBriefings in Bioinformatics
#index762612
#% 
#!
  
#*Computational proteomics: management and analysis of proteomics data.
#@Mario Cannataro
#t2008
#cBriefings in Bioinformatics
#index762613
#% 
#!
  
#*The HUPO proteomics standards initiative - easing communication and minimizing data loss in a changing world.
#@Sandra E. Orchard,Henning Hermjakob
#t2008
#cBriefings in Bioinformatics
#index762614
#% 
#!
  
#*Computational methods for the comparative quantification of proteins in label-free LC-MS experiments.
#@Jason W. H. Wong,Matthew J. Sullivan,Gerard Cagney
#t2008
#cBriefings in Bioinformatics
#index762615
#% 
#!
  
#*The BREW workshop series: a stimulating experience in PhD education.
#@Robert Giegerich,Alvis Brazma,Inge Jonassen,Esko Ukkonen,Martin Vingron
#t2008
#cBriefings in Bioinformatics
#index762616
#% 
#!
  
#*Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server.
#@Alexander Sczyrba,Susanne Konermann,Robert Giegerich
#t2008
#cBriefings in Bioinformatics
#index762617
#% 
#!
  
#*Pfam 10 years on: 10 000 families and still growing.
#@Stephen John Sammut,Robert D. Finn,Alex Bateman
#t2008
#cBriefings in Bioinformatics
#index762618
#% 
#!
  
#*Gene-set approach for expression pattern analysis.
#@Dougu Nam,Seon-Young Kim
#t2008
#cBriefings in Bioinformatics
#index762619
#% 
#!
  
#*A review of bioinformatics education in Germany.
#@Ina Koch,Georg Fuellen
#t2008
#cBriefings in Bioinformatics
#index762620
#% 
#!
  
#*ROC analysis: applications to the classification of biological sequences and 3D structures.
#@Paolo Sonego,András Kocsor,Sándor Pongor
#t2008
#cBriefings in Bioinformatics
#index762621
#% 
#!
  
#*Cardiac Gene Expression: Methods and Protocols.: Edited by Jun Zhang and Gregg Rokosh.
#@Narayanan Perumal
#t2008
#cBriefings in Bioinformatics
#index762622
#% 
#!
  
#*VisANT: an integrative framework for networks in systems biology.
#@Zhenjun Hu,Evan S. Snitkin,Charles DeLisi
#t2008
#cBriefings in Bioinformatics
#index762623
#% 
#!
  
#*IMGT, a system and an ontology that bridge biological and computational spheres in bioinformatics.
#@Marie-Paule Lefranc,Véronique Giudicelli,Laetitia Regnier,Patrice Duroux
#t2008
#cBriefings in Bioinformatics
#index762624
#% 
#!
  
#*Bioinformatics, multiscale modeling and the IUPS Physiome Project.
#@Peter J. Hunter,Edmund J. Crampin,Poul M. F. Nielsen
#t2008
#cBriefings in Bioinformatics
#index762625
#% 
#!
  
#*MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences.
#@Sudhir Kumar,Masatoshi Nei,Joel Dudley,Koichiro Tamura
#t2008
#cBriefings in Bioinformatics
#index762626
#% 
#!
  
#*Recent developments in the MAFFT multiple sequence alignment program.
#@Kazutaka Katoh,Hiroyuki Toh
#t2008
#cBriefings in Bioinformatics
#index762627
#% 
#!
  
#*Critical technologies for bioinformatics.
#@Vladimir Brusic,Shoba Ranganathan
#t2008
#cBriefings in Bioinformatics
#index762628
#% 
#!
  
#*The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation.
#@Edgar Wingender
#t2008
#cBriefings in Bioinformatics
#index762629
#% 
#!
  
#*Protein structure databases with new web services for structural biology and biomedical research.
#@Daron M. Standley,Akira R. Kinjo,Kengo Kinoshita,Haruki Nakamura
#t2008
#cBriefings in Bioinformatics
#index762630
#% 
#!
  
#*Computational intelligence approaches for pattern discovery in biological systems.
#@Gary B. Fogel
#t2008
#cBriefings in Bioinformatics
#index762631
#% 
#!
  
#*Biomedical ontologies: a functional perspective.
#@Daniel L. Rubin,Nigam Shah,Natalya Fridman Noy
#t2008
#cBriefings in Bioinformatics
#index762632
#% 
#!
  
#*Gene-set approach for expression pattern analysis.
#@Dougu Nam,Seon-Young Kim
#t2008
#cBriefings in Bioinformatics
#index762633
#% 
#!
  
#*The Beta Workbench: a computational tool to study the dynamics of biological systems.
#@Lorenzo Dematté,Corrado Priami,Alessandro Romanel
#t2008
#cBriefings in Bioinformatics
#index762634
#% 
#!
  
#*A critical examination of stoichiometric and path-finding approaches to metabolic pathways.
#@Francisco J. Planes,John E. Beasley
#t2008
#cBriefings in Bioinformatics
#index762635
#% 
#!
  
#*Identification of replication origins in prokaryotic genomes.
#@Natalia V. Sernova,Mikhail S. Gelfand
#t2008
#cBriefings in Bioinformatics
#index762636
#% 
#!
  
#*The relative value of operon predictions.
#@Rutger W. W. Brouwer,Oscar P. Kuipers,Sacha A. F. T. van Hijum
#t2008
#cBriefings in Bioinformatics
#index762637
#% 
#!
  
#*Detecting short tandem repeats from genome data: opening the software black box.
#@Angelika Merkel,Neil Gemmell
#t2008
#cBriefings in Bioinformatics
#index762638
#% 
#!
  
#*Biodiversity informatics: the challenge of linking data and the role of shared identifiers.
#@Roderic D. M. Page
#t2008
#cBriefings in Bioinformatics
#index762639
#% 
#!
  
#*A structured approach for the engineering of biochemical network models, illustrated for signalling pathways.
#@Rainer Breitling,David Gilbert,Monika Heiner,Richard J. Orton
#t2008
#cBriefings in Bioinformatics
#index762640
#% 
#!
  
#*Handbook of Computational Molecular Biology: Edited by Srinivas Aluru.
#@Suzanne S. Sindi
#t2007
#cBriefings in Bioinformatics
#index762641
#% 
#!
  
#*Genome assembly reborn: recent computational challenges.
#@Mihai Pop
#t2009
#cBriefings in Bioinformatics
#index1219565
#% 
#!
  
#*Experience using web services for biological sequence analysis.
#@Heinz Stockinger,Teresa K. Attwood,Shahid Nadeem Chohan,Richard G. Côté,Philippe Cudré-Mauroux,Laurent Falquet,Pedro Fernandes,Robert D. Finn,Taavi Hupponen,Eija Korpelainen,Alberto Labarga,Aurélie Laugraud,Tania Lima,Evangelos Pafilis,Marco Pagni,Steve Pettifer,Isabelle Phan,Nazim Rahman
#t2008
#cBriefings in Bioinformatics
#index1219566
#% 
#!
  
#*Literature mining in support of drug discovery.
#@Pankaj Agarwal,David B. Searls
#t2008
#cBriefings in Bioinformatics
#index1219567
#% 
#!
  
#*Data and knowledge integration in the life sciences.
#@Stephan Philippi
#t2008
#cBriefings in Bioinformatics
#index1219568
#% 
#!
  
#*Problems and Solutions in Biological Sequence Analysis, Mark Borodovsky, Svetlana Ekisheva.
#@Mihaela Pertea
#t2008
#cBriefings in Bioinformatics
#index1219569
#% 
#!
  
#*Solutions for data integration in functional genomics: a critical assessment and case study.
#@Damian Smedley,Morris A. Swertz,Katy Wolstencroft,Glenn Proctor,Michael Zouberakis,Jonathan B. L. Bard,John M. Hancock,Paul N. Schofield
#t2008
#cBriefings in Bioinformatics
#index1219570
#% 
#!
  
#*Categorization of services for seeking information in biomedical literature: a typology for improvement of practice.
#@Jung-jae Kim,Dietrich Rebholz-Schuhmann
#t2008
#cBriefings in Bioinformatics
#index1219571
#% 
#!
  
#*Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?
#@Rainer Winnenburg,Thomas Wächter,Conrad Plake,Andreas Doms,Michael Schroeder
#t2008
#cBriefings in Bioinformatics
#index1219572
#% 
#!
  
#*Data curation + process curation=data integration + science.
#@Carole A. Goble,Robert Stevens,Duncan Hull,Katy Wolstencroft,Rodrigo Lopez
#t2008
#cBriefings in Bioinformatics
#index1219573
#% 
#!
  
#*Mathematics of Evolution and Phylogeny, Edited by Olivier Gascuel.
#@Jim Whitfield
#t2008
#cBriefings in Bioinformatics
#index1219574
#% 
#!
  
#*Building a knowledge base for systems pathology.
#@Holger Michael,Jennifer Hogan,Alexander E. Kel,Olga V. Kel-Margoulis,Frank Schacherer,Nico Voss,Edgar Wingender
#t2008
#cBriefings in Bioinformatics
#index1219575
#% 
#!
  
#*Methods in Microarray Normalization, Edited by Phillip Stafford.
#@Jean-Jacques Daudin
#t2008
#cBriefings in Bioinformatics
#index1219576
#% 
#!
  
#*Semantic Web for Health Care and Life Sciences: a review of the state of the art.
#@Kei-Hoi Cheung,Eric Prud'hommeaux,Yimin Wang,Susie Stephens
#t2009
#cBriefings in Bioinformatics
#index1219577
#% 
#!
  
#*Web-based applications for building, managing and analysing kinetic models of biological systems.
#@Dong-Yup Lee,Rajib Saha,Faraaz Noor Khan Yusufi,Wonjun Park,Iftekhar A. Karimi
#t2009
#cBriefings in Bioinformatics
#index1219578
#% 
#!
  
#*Simulation of DNA sequence evolution under models of recent directional selection.
#@Yuseob Kim,Thomas Wiehe
#t2009
#cBriefings in Bioinformatics
#index1219579
#% 
#!
  
#*A roadmap of clustering algorithms: finding a match for a biomedical application.
#@Bill Andreopoulos,Aijun An,Xiaogang Wang,Michael Schroeder
#t2009
#cBriefings in Bioinformatics
#index1219580
#% 
#!
  
#*Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks.
#@Jan Baumbach,Andreas Tauch,Sven Rahmann
#t2009
#cBriefings in Bioinformatics
#index1219581
#% 
#!
  
#*Potential Bias in GO: : TermFinder.
#@Robert M. Flight,Peter D. Wentzell
#t2009
#cBriefings in Bioinformatics
#index1219582
#% 
#!
  
#*Biochemical simulations: stochastic, approximate stochastic and hybrid approaches.
#@Jürgen Pahle
#t2009
#cBriefings in Bioinformatics
#index1219583
#% 
#!
  
#*Flux balance analysis of biological systems: applications and challenges.
#@Karthik Raman,Nagasuma Chandra
#t2009
#cBriefings in Bioinformatics
#index1219584
#% 
#!
  
#*Computational systems biology of the cell cycle.
#@Attila Csikasz-Nagy
#t2009
#cBriefings in Bioinformatics
#index1219585
#% 
#!
  
#*FINDSITE: a combined evolution/structure-based approach to protein function prediction.
#@Jeffrey Skolnick,Michal Brylinski
#t2009
#cBriefings in Bioinformatics
#index1219586
#% 
#!
  
#*Progress and challenges in predicting protein-protein interaction sites.
#@Iakes Ezkurdia,Lisa Bartoli,Piero Fariselli,Rita Casadio,Alfonso Valencia,Michael L. Tress
#t2009
#cBriefings in Bioinformatics
#index1219587
#% 
#!
  
#*Taming the complexity of biological pathways through parallel computing.
#@Paolo Ballarini,Rosita Guido,Tommaso Mazza,Davide Prandi
#t2009
#cBriefings in Bioinformatics
#index1219588
#% 
#!
  
#*Domain mobility in proteins: functional and evolutionary implications.
#@Malay Kumar Basu,Eugenia Poliakov,Igor B. Rogozin
#t2009
#cBriefings in Bioinformatics
#index1219589
#% 
#!
  
#*Building biomedical web communities using a semantically aware content management system.
#@Sudeshna Das,Lisa Girard,Tom Green,Louis Weitzman,Alister Lewis-Bowen,Tim Clark
#t2009
#cBriefings in Bioinformatics
#index1219590
#% 
#!
  
#*The virtual cell - a candidate co-ordinator for 'middle-out' modelling of biological systems.
#@Dawn C. Walker,Jennifer Southgate
#t2009
#cBriefings in Bioinformatics
#index1219591
#% 
#!
  
#*Computational biology for cardiovascular biomarker discovery.
#@Francisco Azuaje,Yvan Devaux,Daniel R. Wagner
#t2009
#cBriefings in Bioinformatics
#index1219592
#% 
#!
  
#*Linked data and provenance in biological data webs.
#@Jun Zhao,Alistair Miles,Graham Klyne,David M. Shotton
#t2009
#cBriefings in Bioinformatics
#index1219593
#% 
#!
  
#*Biological knowledge management: the emerging role of the Semantic Web technologies.
#@Erick Antezana,Martin Kuiper,Vladimir Mironov
#t2009
#cBriefings in Bioinformatics
#index1219594
#% 
#!
  
#*Towards pharmacogenomics knowledge discovery with the semantic web.
#@Michel Dumontier,Natalia Villanueva-Rosales
#t2009
#cBriefings in Bioinformatics
#index1219595
#% 
#!
  
#*Semantic web for integrated network analysis in biomedicine.
#@Huajun Chen,Li Ding,Zhaohui Wu,Tong Yu,Lavanya Dhanapalan,Jake Yue Chen
#t2009
#cBriefings in Bioinformatics
#index1219596
#% 
#!
  
#*Models of coding sequence evolution.
#@Wayne Delport,Konrad Scheffler,Cathal Seoighe
#t2009
#cBriefings in Bioinformatics
#index1219597
#% 
#!
  
#*Life sciences on the Semantic Web: the Neurocommons and beyond.
#@Alan Ruttenberg,Jonathan Rees,Matthias Samwald,M. Scott Marshall
#t2009
#cBriefings in Bioinformatics
#index1219598
#% 
#!
  
#*Next generation tools for the annotation of human SNPs.
#@Rachel Karchin
#t2009
#cBriefings in Bioinformatics
#index1219599
#% 
#!
  
#*Bringing Web 2.0 to bioinformatics.
#@Zhang Zhang,Kei-Hoi Cheung,Jeffrey P. Townsend
#t2009
#cBriefings in Bioinformatics
#index1219600
#% 
#!
  
#*An introduction to artificial neural networks in bioinformatics - application to complex microarray and mass spectrometry datasets in cancer studies.
#@Lee Lancashire,Christophe Lemetre,Graham R. Ball
#t2009
#cBriefings in Bioinformatics
#index1219601
#% 
#!
  
#*Editorial.
#@Werner Dubitzky
#t2009
#cBriefings in Bioinformatics
#index1219602
#% 
#!
  
#*Introduction to Computational Genomics: A Case Studies Approach Nello Cristianini and Matthew W. Hahn.
#@Nadav Ahituv
#t2009
#cBriefings in Bioinformatics
#index1219603
#% 
#!
  
#*Moby and Moby 2: Creatures of the Deep (Web).
#@Benjamin P. Vandervalk,E. Luke McCarthy,Mark D. Wilkinson
#t2009
#cBriefings in Bioinformatics
#index1219604
#% 
#!
  
#*2D molecular graphics: a flattened world of chemistry and biology.
#@Peng Zhou,Zhicai Shang
#t2009
#cBriefings in Bioinformatics
#index1219605
#% 
#!
  
#*A pitfall of wiki solution for biological databases.
#@Masanori Arita
#t2009
#cBriefings in Bioinformatics
#index1219606
#% 
#!
  
#*Computational methods for discovering gene networks from expression data.
#@Wei-Po Lee,Wen-Shyong Tzou
#t2009
#cBriefings in Bioinformatics
#index1219607
#% 
#!
  
#*ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization.
#@Francesco Pappalardo,Mark D. Halling-Brown,Nicolas Rapin,Ping Zhang,Davide Alemani,Andrew Emerson,Paola Paci,Patrice Duroux,Marzio Pennisi,Arianna Palladini,Olivo Miotto,Daniel Churchill,Elda Rossi,Adrian J. Shepherd,David S. Moss,Filippo Castiglione,Massimo Bernaschi,Marie-Paule Lefranc,Søren Brunak,Santo Motta,Pierluigi Lollini,Kaye E. Basford,Vladimir Brusic
#t2009
#cBriefings in Bioinformatics
#index1219608
#% 
#!
  
#*Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis.
#@Mohamed Radhouene Aniba,Sophie Siguenza,Anne Friedrich,Frédéric Plewniak,Olivier Poch,Aron Marchler-Bauer,Julie Dawn Thompson
#t2009
#cBriefings in Bioinformatics
#index1219609
#% 
#!
  
#*A survey of available tools and web servers for analysis of protein-protein interactions and interfaces.
#@Nurcan Tuncbag,Gozde Kar,Ozlem Keskin,Attila Gürsoy,Ruth Nussinov
#t2009
#cBriefings in Bioinformatics
#index1219610
#% 
#!
  
#*Approaches to neuroscience data integration.
#@Kei-Hoi Cheung,Ernest Lim,Matthias Samwald,Huajun Chen,Luis N. Marenco,Matthew Holford,Thomas M. Morse,Pradeep Mutalik,Gordon M. Shepherd,Perry L. Miller
#t2009
#cBriefings in Bioinformatics
#index1219611
#% 
#!
  
#*Probes containing runs of guanines provide insights into the biophysics and bioinformatics of Affymetrix GeneChips.
#@William B. Langdon,Graham J. G. Upton,Andrew P. Harrison
#t2009
#cBriefings in Bioinformatics
#index1219612
#% 
#!
  
#*Scaling the walls of discovery: using semantic metadata for integrative problem solving.
#@Maurice Manning,Amit Aggarwal,Kevin Gao,Greg Tucker-Kellogg
#t2009
#cBriefings in Bioinformatics
#index1219613
#% 
#!
  
#*Exploring autonomy through computational biomodelling.
#@Niall M. Palfreyman
#t2009
#cBriefings in Bioinformatics
#index1219614
#% 
#!
  
#*Gene-set analysis and reduction.
#@Irina Dinu,John D. Potter,Thomas Mueller,Qi Liu,Adeniyi J. Adewale,Gian S. Jhangri,Gunilla Einecke,Konrad S. Famulski,Philip Halloran,Yutaka Yasui
#t2009
#cBriefings in Bioinformatics
#index1219615
#% 
#!
  
#*Data integration for plant genomics - exemplars from the integration of databases.
#@Artem Lysenko,Matthew Morritt Hindle,Jan Taubert,Mansoor Saqi,Christopher J. Rawlings
#t2010
#cBriefings in Bioinformatics
#index2849361
#% 
#!
  
#*High-performance analysis of biological systems dynamics with the DiVinE model checker.
#@Jiri Barnat,Lubos Brim,David Safránek
#t2010
#cBriefings in Bioinformatics
#index2849399
#% 
#!
  
#*Flexible experimentation in the modeling and simulation framework JAMES II - implications for computational systems biology.
#@Roland Ewald,Jan Himmelspach,Matthias Jeschke,Stefan Leye,Adelinde M. Uhrmacher
#t2010
#cBriefings in Bioinformatics
#index2849372
#% 
#!
  
#*Development of biomarker classifiers from high-dimensional data.
#@Songjoon Baek,Chen-An Tsai,James J. Chen
#t2009
#cBriefings in Bioinformatics
#index2849391
#% 
#!
  
#*Dealing with missing values in large-scale studies: microarray data imputation and beyond.
#@Tero Aittokallio
#t2010
#cBriefings in Bioinformatics
#index2849389
#% 
#!
  
#*Data integration for plant genomics - exemplars from the integration of databases.
#@Artem Lysenko,Matthew Morritt Hindle,Jan Taubert,Mansoor Saqi,Christopher J. Rawlings
#t2009
#cBriefings in Bioinformatics
#index2849362
#% 
#!
  
#*Simulation of P systems with active membranes on CUDA.
#@José M. Cecilia,José M. García,Ginés D. Guerrero,Miguel A. Martínez-del-Amor,Ignacio Pérez-Hurtado,Mario J. Pérez-Jiménez
#t2010
#cBriefings in Bioinformatics
#index2849371
#% 
#!
  
#*Optimized detection of differential expression in global profiling experiments: case studies in clinical transcriptomic and quantitative proteomic datasets.
#@Laura Elo,Jukka Hiissa,Jarno Tuimala,Aleksi Kallio,Eija Korpelainen,Tero Aittokallio
#t2009
#cBriefings in Bioinformatics
#index2849382
#% 
#!
  
#*Knowledge-based data analysis comes of age.
#@Michael F. Ochs
#t2010
#cBriefings in Bioinformatics
#index2849378
#% 
#!
  
#*Stability and aggregation of ranked gene lists.
#@Anne-Laure Boulesteix,Martin Slawski
#t2009
#cBriefings in Bioinformatics
#index2849392
#% 
#!
  
#*Real-time classification of datasets with hardware embedded neuromorphic neural networks.
#@Laszlo Bako
#t2010
#cBriefings in Bioinformatics
#index2849369
#% 
#!
  
#*An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes.
#@Giulia Soldà,Igor V. Makunin,Osman Ugur Sezerman,Alberto Corradin,Giorgio Corti,Alessandro Guffanti
#t2009
#cBriefings in Bioinformatics
#index2849364
#% 
#!
  
#*Architecture, function and prediction of long signal peptides.
#@Jan A. Hiss,Gisbert Schneider
#t2009
#cBriefings in Bioinformatics
#index2849383
#% 
#!
  
#*De novo sequencing of plant genomes using second-generation technologies.
#@Michael Imelfort,David Edwards
#t2009
#cBriefings in Bioinformatics
#index2849355
#% 
#!
  
#*Modern Genome Annotation . Edited by Dmitrij Frishman and Alfonso Valencia.
#@Dae-Won Kim,Hong-Seog Park
#t2010
#cBriefings in Bioinformatics
#index2849397
#% 
#!
  
#*GPU computing for systems biology.
#@Lorenzo Dematté,Davide Prandi
#t2010
#cBriefings in Bioinformatics
#index2849398
#% 
#!
  
#*Advances in metaheuristics for gene selection and classification of microarray data.
#@Béatrice Duval,Jin-Kao Hao
#t2010
#cBriefings in Bioinformatics
#index2849384
#% 
#!
  
#*High performance cellular level agent-based simulation with FLAME for the GPU.
#@Paul Richmond,Dawn Walker,Simon Coakley,Daniela M. Romano
#t2010
#cBriefings in Bioinformatics
#index2849370
#% 
#!
  
#*Advances in translational bioinformatics: computational approaches for the hunting of disease genes.
#@Maricel G. Kann
#t2010
#cBriefings in Bioinformatics
#index2849363
#% 
#!
  
#*Toward the dynamic interactome: it's about time.
#@Teresa M. Przytycka,Mona Singh,Donna K. Slonim
#t2010
#cBriefings in Bioinformatics
#index2849376
#% 
#!
  
#*Computational techniques for elucidating plant-pathogen interactions from large-scale experiments on fungi and oomycetes.
#@Carol Soderlund
#t2009
#cBriefings in Bioinformatics
#index2849357
#% 
#!
  
#*Genome variation discovery with high-throughput sequencing data.
#@Adrian V. Dalca,Michael Brudno
#t2010
#cBriefings in Bioinformatics
#index2849377
#% 
#!
  
#*Editorial.
#@Jo L. Dicks
#t2009
#cBriefings in Bioinformatics
#index2849395
#% 
#!
  
#*Computational approaches and software tools for genetic linkage map estimation in plants.
#@Jitender Cheema,Jo L. Dicks
#t2009
#cBriefings in Bioinformatics
#index2849356
#% 
#!
  
#*Detection of human interchromosomal -splicing in sequence databanks.
#@Roberto Hirochi Herai,Michel E. Beleza Yamagishi
#t2010
#cBriefings in Bioinformatics
#index2849386
#% 
#!
  
#*Towards accurate human promoter recognition: a review of currently used sequence features and classification methods.
#@Jia Zeng,Shanfeng Zhu,Hong Yan
#t2009
#cBriefings in Bioinformatics
#index2849366
#% 
#!
  
#*Exploration of cellular reaction systems.
#@Markus Kirkilionis
#t2010
#cBriefings in Bioinformatics
#index2849367
#% 
#!
  
#*BioModels.net Web Services, a free and integrated toolkit for computational modelling software.
#@Chen Li,Mélanie Courtot,Nicolas Le Novère,Camille Laibe
#t2010
#cBriefings in Bioinformatics
#index2849385
#% 
#!
  
#*Current progress in patient-specific modeling.
#@Maxwell Lewis Neal,Roy Kerckhoffs
#t2010
#cBriefings in Bioinformatics
#index2849375
#% 
#!
  
#*Multi-scale modelling in computational biomedicine.
#@Peter M. A. Sloot,Alfons G. Hoekstra
#t2010
#cBriefings in Bioinformatics
#index2849358
#% 
#!
  
#*Bioinformatical approaches to characterize intrinsically disordered/unstructured proteins.
#@Zsuzsanna Dosztányi,Bálint Mészáros,István Simon
#t2010
#cBriefings in Bioinformatics
#index2849374
#% 
#!
  
#*Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.
#@David Stephen Horner,Giulio Pavesi,Tiziana Castrignanò,Paolo D'Onorio De Meo,Sabino Liuni,Michael Sammeth,Ernesto Picardi,Graziano Pesole
#t2010
#cBriefings in Bioinformatics
#index2849359
#% 
#!
  
#*Detection call algorithms for high-throughput gene expression microarray data.
#@Kellie J. Archer,Sarah E. Reese
#t2010
#cBriefings in Bioinformatics
#index2849368
#% 
#!
  
#*Editorial: Current progress in Bioinformatics 2010.
#@Russ B. Altman
#t2010
#cBriefings in Bioinformatics
#index2849396
#% 
#!
  
#*Gene association analysis: a survey of frequent pattern mining from gene expression data.
#@Ronnie Alves,Domingo S. Rodríguez-Baena,Jesús S. Aguilar-Ruiz
#t2010
#cBriefings in Bioinformatics
#index2849365
#% 
#!
  
#*Improved criteria and comparative genomics tool provide new insights into grass paleogenomics.
#@Jerome Salse,Michael Abrouk,Florent Murat,Umar Masood Quraishi,Catherine Feuillet
#t2009
#cBriefings in Bioinformatics
#index2849354
#% 
#!
  
#*Estimating the divisibility of complex biological networks by sparseness indices.
#@Tommaso Mazza,Alessandro Romanel,Ferenc Jordán
#t2010
#cBriefings in Bioinformatics
#index2849388
#% 
#!
  
#*CaliBayes and BASIS: integrated tools for the calibration, simulation and storage of biological simulation models.
#@Yuhui Chen,Conor Lawless,Colin S. Gillespie,Jake Wu,Richard J. Boys,Darren J. Wilkinson
#t2010
#cBriefings in Bioinformatics
#index2849379
#% 
#!
  
#*Computational methods for the detection of -regulatory modules.
#@Peter Van Loo,Peter Marynen
#t2009
#cBriefings in Bioinformatics
#index2849380
#% 
#!
  
#*Finding sequence motifs in prokaryotic genomes - a brief practical guide for a microbiologist.
#@Jan Mrázek
#t2009
#cBriefings in Bioinformatics
#index2849393
#% 
#!
  
#*Software engineering the mixed model for genome-wide association studies on large samples.
#@Zhiwu Zhang,Edward S. Buckler,Terry M. Casstevens,Peter J. Bradbury
#t2009
#cBriefings in Bioinformatics
#index2849352
#% 
#!
  
#*Expression profiling of microRNAs by deep sequencing.
#@Chad Creighton,Jeffrey G. Reid,Preethi H. Gunaratne
#t2009
#cBriefings in Bioinformatics
#index2849394
#% 
#!
  
#*Common introns within orthologous genes: software and application to plants.
#@Matthew D. Wilkerson,Yuanbin Ru,Volker Brendel
#t2009
#cBriefings in Bioinformatics
#index2849390
#% 
#!
  
#*Recent advances in computer-aided drug design.
#@Chun Meng Song,Shen Jean Lim,Joo Chuan Tong
#t2009
#cBriefings in Bioinformatics
#index2849381
#% 
#!
  
#*Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.
#@Peter D. Karp,Suzanne M. Paley,Markus Krummenacker,Mario Latendresse,Joseph M. Dale,Thomas J. Lee,Pallavi Kaipa,Fred Gilham,Aaron Spaulding,Liviu Popescu,Tomer Altman,Ian T. Paulsen,Ingrid M. Keseler,Ron Caspi
#t2010
#cBriefings in Bioinformatics
#index2849387
#% 
#!
  
#*The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.
#@Gil Alterovitz,Taro Muso,Marco Ramoni
#t2010
#cBriefings in Bioinformatics
#index2849373
#% 
#!
  
#*Bioinformatics in the orphan crops.
#@Ian Armstead,Lin Huang,Adriana Ravagnani,Paul Robson,Helen Ougham
#t2009
#cBriefings in Bioinformatics
#index2849353
#% 
#!
  
#*Editorial: Accelerating systems biology.
#@Tommaso Mazza
#t2010
#cBriefings in Bioinformatics
#index2849360
#% 
#!
  
#*A survey of sequence alignment algorithms for next-generation sequencing.
#@Heng Li,Nils Homer
#t2010
#cBriefings in Bioinformatics
#index2964195
#% 
#!
  
#*Perspectives on presentation and pedagogy in aid of bioinformatics education.
#@Pier Luigi Buttigieg
#t2010
#cBriefings in Bioinformatics
#index2964218
#% 
#!
  
#*Bioinformatics education dissemination with an evolutionary problem solving perspective.
#@John R. Jungck,Samuel S. Donovan,Anton E. Weisstein,Noppadon Khiripet,Stephen J. Everse
#t2010
#cBriefings in Bioinformatics
#index2964207
#% 
#!
  
#*Next generation sequencing in functional genomics.
#@Thomas Werner
#t2010
#cBriefings in Bioinformatics
#index2964210
#% 
#!
  
#*Semiparametric prognosis models in genomic studies.
#@Shuangge Ma,Jian Huang,Mingyu Shi,Yang Li,Ben-Chang Shia
#t2010
#cBriefings in Bioinformatics
#index2964219
#% 
#!
  
#*Introduction into the analysis of high-throughput-sequencing based epigenome data.
#@Mikael Huss
#t2010
#cBriefings in Bioinformatics
#index2964209
#% 
#!
  
#*Bioinformatics education in India.
#@Urmila Kulkarni-Kale,Sangeeta Sawant,Vishwas Chavan
#t2010
#cBriefings in Bioinformatics
#index2964215
#% 
#!
  
#*The GTPB training programme in Portugal.
#@Pedro L. Fernandes
#t2010
#cBriefings in Bioinformatics
#index2964197
#% 
#!
  
#*Developing computational model-based diagnostics to analyse clinical chemistry data.
#@Daniël B. van Schalkwijk,Kees van Bochove,Ben van Ommen,Andreas P. Freidig,Eugene P. van Someren,Jan van der Greef,Albert A. de Graaf
#t2010
#cBriefings in Bioinformatics
#index2964220
#% 
#!
  
#*Bioinformatics training: a review of challenges, actions and support requirements.
#@Maria Victoria Schneider,James Watson,Teresa K. Attwood,Kristian Rother,Aidan Budd,Jennifer McDowall,Allegra Via,Pedro Fernandes,Tommi H. Nyrönen,Thomas Blicher,Phil Jones,Marie-Claude Blatter,Javier De Las Rivas,David Phillip Judge,Wouter van der Gool,Catherine Brooksbank
#t2010
#cBriefings in Bioinformatics
#index2964216
#% 
#!
  
#*Online tools for understanding rat physiology.
#@Melinda R. Dwinell
#t2010
#cBriefings in Bioinformatics
#index2964198
#% 
#!
  
#*Molecular networks for the study of TCM Pharmacology.
#@Jing Zhao,Peng Jiang,Weidong Zhang
#t2010
#cBriefings in Bioinformatics
#index2964212
#% 
#!
  
#*Education resources of the National Center for Biotechnology Information.
#@Peter S. Cooper,Dawn Lipshultz,Wayne Matten,Scott D. McGinnis,Steven Pechous,Monica L. Romiti,Tao Tao,Majda Valjavec-Gratian,Eric W. Sayers
#t2010
#cBriefings in Bioinformatics
#index2964203
#% 
#!
  
#*Multi-stage learning aids applied to hands-on software training.
#@Kristian Rother,Magdalena Rother,Alexandra Pleus,Annette Upmeier zu Belzen
#t2010
#cBriefings in Bioinformatics
#index2964199
#% 
#!
  
#*DNA barcoding: a six-question tour to improve users' awareness about the method.
#@Maurizio Casiraghi,Massimo Labra,Emanuele Ferri,Andrea Galimberti,Fabrizio De Mattia
#t2010
#cBriefings in Bioinformatics
#index2964211
#% 
#!
  
#*A model for Bioinformatics training: the marine biological laboratory.
#@Grant Yamashita,Holly Miller,Anthony Goddard,Cathy Norton
#t2010
#cBriefings in Bioinformatics
#index2964213
#% 
#!
  
#*assembly of short sequence reads.
#@Konrad H. Paszkiewicz,David J. Studholme
#t2010
#cBriefings in Bioinformatics
#index2964204
#% 
#!
  
#*Bioinformatics training: selecting an appropriate learning content management system - an example from the European Bioinformatics Institute.
#@Victoria Ann Wright,Brendan W. Vaughan,Thomas Laurent,Rodrigo Lopez,Catherine Brooksbank,Maria Victoria Schneider
#t2010
#cBriefings in Bioinformatics
#index2964200
#% 
#!
  
#*Challenges of sequencing human genomes.
#@Daniel C. Koboldt,Li Ding,Elaine R. Mardis,Richard K. Wilson
#t2010
#cBriefings in Bioinformatics
#index2964214
#% 
#!
  
#*Editorial: Bioinformatics education in the 21st century.
#@Indra Neil Sarkar
#t2010
#cBriefings in Bioinformatics
#index2964196
#% 
#!
  
#*Broader incorporation of bioinformatics in education: opportunities and challenges.
#@Michael P. Cummings,Glena G. Temple
#t2010
#cBriefings in Bioinformatics
#index2964201
#% 
#!
  
#*OpenHelix: bioinformatics education outside of a different box.
#@Jennifer M. Williams,Mary E. Mangan,Cynthia Perreault-Micale,Scott Lathe,Neeraj Sirohi,Warren C. Lathe
#t2010
#cBriefings in Bioinformatics
#index2964206
#% 
#!
  
#*Fast and efficient searching of biological data resources - using EB-eye.
#@Franck Valentin,Silvano Squizzato,Mickael Goujon,Hamish McWilliam,Juri Paern,Rodrigo Lopez
#t2010
#cBriefings in Bioinformatics
#index2964205
#% 
#!
  
#*Editorial: Second-generation sequencing.
#@Keith Robison
#t2010
#cBriefings in Bioinformatics
#index2964202
#% 
#!
  
#*Application of second-generation sequencing to cancer genomics.
#@Keith Robison
#t2010
#cBriefings in Bioinformatics
#index2964208
#% 
#!
  
#*SynBioSS designer: a web-based tool for the automated generation of kinetic models for synthetic biological constructs.
#@Emma M. B. Weeding,Jason Houle,Yiannis N. Kaznessis
#t2010
#cBriefings in Bioinformatics
#index2964217
#% 
#!
  
#*Knowledge-Based Bioinformatics - From analysis to interpretation.Edited by Gil Alterovitz and Marco Ramoni.
#@Seonho Kim
#t2011
#cBriefings in Bioinformatics
#index3061695
#% 
#!
  
#*Comparative study of computational methods to detect the correlated reaction sets in biochemical networks.
#@Yanping Xi,Yi-Ping Phoebe Chen,Chen Qian,Fei Wang
#t2011
#cBriefings in Bioinformatics
#index3061709
#% 
#!
  
#*Design and validation issues in RNA-seq experiments.
#@Zhide Fang,Xiangqin Cui
#t2011
#cBriefings in Bioinformatics
#index3061713
#% 
#!
  
#*Case studies in reproducibility.
#@Torsten Hothorn,Friedrich Leisch
#t2011
#cBriefings in Bioinformatics
#index3061719
#% 
#!
  
#*Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction.
#@Danny Barash,Alexander Churkin
#t2011
#cBriefings in Bioinformatics
#index3061708
#% 
#!
  
#*PHAST and RPHAST: phylogenetic analysis with space/time models.
#@Melissa J. Hubisz,Katherine S. Pollard,Adam C. Siepel
#t2011
#cBriefings in Bioinformatics
#index3061701
#% 
#!
  
#*A guide to web tools to prioritize candidate genes.
#@Léon-Charles Tranchevent,Francisco Bonachela Capdevila,Daniela Nitsch,Bart De Moor,Patrick De Causmaecker,Yves Moreau
#t2011
#cBriefings in Bioinformatics
#index3061700
#% 
#!
  
#*Validation in Genetic Association Studies.
#@Inke R. König
#t2011
#cBriefings in Bioinformatics
#index3061720
#% 
#!
  
#*Added predictive value of high-throughput molecular data to clinical data and its validation.
#@Anne-Laure Boulesteix,Willi Sauerbrei
#t2011
#cBriefings in Bioinformatics
#index3061715
#% 
#!
  
#*Protein mass spectra data analysis for clinical biomarker discovery: a global review.
#@Pascal Roy,Caroline Truntzer,Delphine Maucort-Boulch,Thomas Jouve,Nicolas Molinari
#t2011
#cBriefings in Bioinformatics
#index3061712
#% 
#!
  
#*An empirical assessment of validation practices for molecular classifiers.
#@Peter J. Castaldi,Issa J. Dahabreh,John P. A. Ioannidis
#t2011
#cBriefings in Bioinformatics
#index3061722
#% 
#!
  
#*Computational discrete models of tissue growth and regeneration.
#@Francisco Azuaje
#t2011
#cBriefings in Bioinformatics
#index3061698
#% 
#!
  
#*The meta-analysis of genome-wide association studies.
#@John R. Thompson,John Attia,Cosetta Minelli
#t2011
#cBriefings in Bioinformatics
#index3061717
#% 
#!
  
#*Bioinformatics.Charlie Hodgman, Andrew French and David Westhead Instant.
#@Medha Bhagwat,Lynn Young
#t2011
#cBriefings in Bioinformatics
#index3061703
#% 
#!
  
#*Proteome Bioinformatics. Edited by Simon J. Hubbard and Andrew R. Jones, .
#@Xiang Zhang
#t2011
#cBriefings in Bioinformatics
#index3061696
#% 
#!
  
#*Letter to the Editor: Stability of Random Forest importance measures.
#@M. Luz Calle,Víctor Urrea
#t2011
#cBriefings in Bioinformatics
#index3061699
#% 
#!
  
#*Preprocessing and downstream analysis of microarray DNA copy number profiles.
#@Mark A. van de Wiel,Franck Picard,Wessel N. van Wieringen,Bauke Ylstra
#t2011
#cBriefings in Bioinformatics
#index3061702
#% 
#!
  
#*Result verification, code verification and computation of support values in phylogenetics.
#@Alexandros Stamatakis,Fernando Izquierdo-Carrasco
#t2011
#cBriefings in Bioinformatics
#index3061714
#% 
#!
  
#*Evolution of gene regulation - on the road towards computational inferences.
#@Georg Fuellen
#t2011
#cBriefings in Bioinformatics
#index3061705
#% 
#!
  
#*Online resources of cancer data: barriers, benefits and lessons.
#@Emanuela Gadaleta,Nicholas R. Lemoine,Claude Chelala
#t2011
#cBriefings in Bioinformatics
#index3061704
#% 
#!
  
#*Biological feature validation of estimated gene interaction networks from microarray data: a case study on MYC in lymphomas.
#@Ulrich Mansmann,Vindi Jurinovic
#t2011
#cBriefings in Bioinformatics
#index3061723
#% 
#!
  
#*Ensemble learning algorithms for classification of mtDNA into haplogroups.
#@Carol Wong,Yuran Li,Chih Lee,Chun-Hsi Huang
#t2011
#cBriefings in Bioinformatics
#index3061697
#% 
#!
  
#*Editorial.
#@Anne-Laure Boulesteix
#t2011
#cBriefings in Bioinformatics
#index3061718
#% 
#!
  
#*Critical assessment of structure-based sequence alignment methods at distant relationships.
#@Singarevelu Kalaimathy,Ramanathan Sowdhamini,Karuppiah Kanagarajadurai
#t2011
#cBriefings in Bioinformatics
#index3061711
#% 
#!
  
#*Using cross-validation to evaluate predictive accuracy of survival risk classifiers based on high-dimensional data.
#@Richard M. Simon,Jyothi Subramanian,Ming-Chung Li,Supriya Menezes
#t2011
#cBriefings in Bioinformatics
#index3061716
#% 
#!
  
#*Challenges in integrating molecular biology data.
#@Anália Lourenço,Sónia Carneiro,Miguel Rocha,Eugénio C. Ferreira,Isabel Rocha
#t2011
#cBriefings in Bioinformatics
#index3061707
#% 
#!
  
#*Ranking prognosis markers in cancer genomic studies.
#@Shuangge Ma,Xiao Song
#t2011
#cBriefings in Bioinformatics
#index3061694
#% 
#!
  
#*Targeted metabolic reconstruction: a novel approach for the characterization of plant-pathogen interactions.
#@Andrés Pinzón,Luis M. Rodriguez-R,Andrés González,Adriana Bernal,Silvia Restrepo
#t2011
#cBriefings in Bioinformatics
#index3061706
#% 
#!
  
#*Computational analysis of miRNA targets in plants: current status and challenges.
#@Xinbin Dai,Zhaohong Zhuang,Patrick Xuechun Zhao
#t2011
#cBriefings in Bioinformatics
#index3061710
#% 
#!
  
#*Validation of gene regulatory networks: scientific and inferential.
#@Edward R. Dougherty
#t2011
#cBriefings in Bioinformatics
#index3061721
#% 
#!
  
#*Database identifies FDA-approved drugs with potential to be repurposed for treatment of orphan diseases.
#@Kui Xu,Timothy R. Coté
#t2011
#cBriefings in Bioinformatics
#index3162012
#% 
#!
  
#*Evolution and applications of plant pathway resources and databases.
#@Yves Sucaet,Taru Deva
#t2011
#cBriefings in Bioinformatics
#index3161999
#% 
#!
  
#*Exploiting drug-disease relationships for computational drug repositioning.
#@Joel Dudley,Tarangini Deshpande,Atul J. Butte
#t2011
#cBriefings in Bioinformatics
#index3162018
#% 
#!
  
#*Missing value imputation for gene expression data: computational techniques to recover missing data from available information.
#@Alan Wee-Chung Liew,Ngai-Fong Law,Hong Yan
#t2011
#cBriefings in Bioinformatics
#index3161996
#% 
#!
  
#*OrthoDisease: tracking disease gene orthologs across 100 species.
#@Kristoffer Forslund,Fabian Schreiber,Nattaphon Thanintorn,Erik L. L. Sonnhammer
#t2011
#cBriefings in Bioinformatics
#index3162014
#% 
#!
  
#*Comparative genomics approach to detecting split-coding regions in a low-coverage genome: lessons from the chimaera (Holocephali, Chondrichthyes).
#@Christophe Dessimoz,Stefan Zoller,Tereza Manousaki,Huan Qiu,Axel Meyer,Shigehiro Kuraku
#t2011
#cBriefings in Bioinformatics
#index3161997
#% 
#!
  
#*Old friends in new guise: repositioning of known drugs with structural bioinformatics.
#@V. Joachim Haupt,Michael Schroeder
#t2011
#cBriefings in Bioinformatics
#index3162015
#% 
#!
  
#*Monovalent and divalent salt correction algorithms for prediction - recommendations for Primer3 usage.
#@Nicolas von Ahsen,Carl T. Wittwer,Ekkehard Schütz
#t2011
#cBriefings in Bioinformatics
#index3162001
#% 
#!
  
#*Base-calling for next-generation sequencing platforms.
#@Christian Ledergerber,Christophe Dessimoz
#t2011
#cBriefings in Bioinformatics
#index3162019
#% 
#!
  
#*Letter to the Editor: On the stability and ranking of predictors from random forest variable importance measures.
#@Kristin K. Nicodemus
#t2011
#cBriefings in Bioinformatics
#index3162016
#% 
#!
  
#*Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees.
#@Brigitte Boeckmann,Marc Robinson-Rechavi,Ioannis Xenarios,Christophe Dessimoz
#t2011
#cBriefings in Bioinformatics
#index3162006
#% 
#!
  
#*Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication.
#@Jaime Huerta-Cepas,Joaquín Dopazo,Martijn A. Huynen,Toni Gabaldón
#t2011
#cBriefings in Bioinformatics
#index3162020
#% 
#!
  
#*Obituary: Walter Fitch and the orthology paradigm.
#@Eugene V. Koonin
#t2011
#cBriefings in Bioinformatics
#index3162009
#% 
#!
  
#*Letter to the Editor: Current progress in patient-specific modeling by Neal and Kerckhoffs (2010).
#@Adam Wittek,Karol Miller
#t2011
#cBriefings in Bioinformatics
#index3162007
#% 
#!
  
#*Drug repositioning for orphan diseases.
#@Divya Sardana,Cheng Zhu,Minlu Zhang,Ranga Chandra Gudivada,Lun Yang,Anil G. Jegga
#t2011
#cBriefings in Bioinformatics
#index3162008
#% 
#!
  
#*Identify drug repurposing candidates by mining the Protein Data Bank.
#@Fabrice Moriaud,Stéphane B. Richard,Stewart A. Adcock,Laetitia Chanas-Martin,Jean-Sébastien Surgand,Marouane Ben Jelloul,François Delfaud
#t2011
#cBriefings in Bioinformatics
#index3162021
#% 
#!
  
#*Models, algorithms and programs for phylogeny reconciliation.
#@Jean-Philippe Doyon,Vincent Ranwez,Vincent Daubin,Vincent Berry
#t2011
#cBriefings in Bioinformatics
#index3162011
#% 
#!
  
#*When orthologs diverge between human and mouse.
#@Walid H. Gharib,Marc Robinson-Rechavi
#t2011
#cBriefings in Bioinformatics
#index3162022
#% 
#!
  
#*Editorial: Computational methods for drug repurposing.
#@Philippe Sanseau,Jacob Koehler
#t2011
#cBriefings in Bioinformatics
#index3162004
#% 
#!
  
#*Ortholog identification in the presence of domain architecture rearrangement.
#@Kimmen Sjölander,Ruchira S. Datta,Yaoqing Shen,Grant M. Shoffner
#t2011
#cBriefings in Bioinformatics
#index3162000
#% 
#!
  
#*Computational methods for Gene Orthology inference.
#@David M. Kristensen,Yuri I. Wolf,Arcady R. Mushegian,Eugene V. Koonin
#t2011
#cBriefings in Bioinformatics
#index3162023
#% 
#!
  
#*Positional orthology: putting genomic evolutionary relationships into context.
#@Colin N. Dewey
#t2011
#cBriefings in Bioinformatics
#index3162010
#% 
#!
  
#*Mining small-molecule screens to repurpose drugs.
#@Sanjay Joshua Swamidass
#t2011
#cBriefings in Bioinformatics
#index3162005
#% 
#!
  
#*Editorial: Orthology and applications.
#@Christophe Dessimoz
#t2011
#cBriefings in Bioinformatics
#index3162002
#% 
#!
  
#*Literature-aided interpretation of gene expression data with the weighted global test.
#@Rob Jelier,Jelle J. Goeman,Kristina M. Hettne,Martijn J. Schuemie,Johan T. den Dunnen,Peter A. C. 't Hoen
#t2011
#cBriefings in Bioinformatics
#index3161998
#% 
#!
  
#*Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
#@Pascale Gaudet,Michael S. Livstone,Suzanna E. Lewis,Paul D. Thomas
#t2011
#cBriefings in Bioinformatics
#index3162017
#% 
#!
  
#*Literature mining, ontologies and information visualization for drug repurposing.
#@Christos Andronis,Anuj Sharma,Vassilis Virvilis,Spyros Deftereos,Aris Persidis
#t2011
#cBriefings in Bioinformatics
#index3162013
#% 
#!
  
#*Letter to the Editor: SeqXML and OrthoXML: standards for sequence and orthology information.
#@Thomas Schmitt,David N. Messina,Fabian Schreiber,Erik L. L. Sonnhammer
#t2011
#cBriefings in Bioinformatics
#index3162003
#% 
#!
  
#*Computational challenges of sequence classification in microbiomic data.
#@Paolo Ribeca,Gabriel Valiente
#t2011
#cBriefings in Bioinformatics
#index3269400
#% 
#!
  
#*Social pathway annotation: extensions of the systems biology metabolic modelling assistant.
#@Ismael Navas Delgado,Alejandro Real-Chicharro,Miguel Angel Medina,Francisca Sánchez-Jiménez,José Francisco Aldana Montes
#t2011
#cBriefings in Bioinformatics
#index3269391
#% 
#!
  
#*Exon array data analysis using Affymetrix power tools and R statistical software.
#@Helen E. Lockstone
#t2011
#cBriefings in Bioinformatics
#index3269392
#% 
#!
  
#*GPU-powered tools boost molecular visualization.
#@Matthieu Chavent,Bruno Lévy,Michael Krone,Katrin Bidmon,Jean-Philippe Nomine,Thomas Ertl,Marc Baaden
#t2011
#cBriefings in Bioinformatics
#index3269399
#% 
#!
  
#*Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts.
#@Adam M. Szalkowski,Christoph D. Schmid
#t2011
#cBriefings in Bioinformatics
#index3269387
#% 
#!
  
#*Bioinformatics tools for the structural elucidation of multi-subunit protein complexes by mass spectrometric analysis of protein-protein cross-links.
#@Shannon L. N. Mayne,Hugh-George Patterton
#t2011
#cBriefings in Bioinformatics
#index3269395
#% 
#!
  
#*The what, where, how and why of gene ontology - a primer for bioinformaticians.
#@Louis du Plessis,Nives Skunca,Christophe Dessimoz
#t2011
#cBriefings in Bioinformatics
#index3269402
#% 
#!
  
#*Editorial.
#@Paolo Romano,Rosalba Giugno,Alfredo Pulvirenti
#t2011
#cBriefings in Bioinformatics
#index3269393
#% 
#!
  
#*Tools and collaborative environments for bioinformatics research.
#@Paolo Romano,Rosalba Giugno,Alfredo Pulvirenti
#t2011
#cBriefings in Bioinformatics
#index3269394
#% 
#!
  
#*myMIR: a genome-wide microRNA targets identification and annotation tool.
#@Dario Corrada,Federica Viti,Ivan Merelli,Cristina Battaglia,Luciano Milanesi
#t2011
#cBriefings in Bioinformatics
#index3269401
#% 
#!
  
#*Protein-protein interaction and pathway databases, a graphical review.
#@Tomas Klingström,Dariusz Plewczynski
#t2011
#cBriefings in Bioinformatics
#index3269396
#% 
#!
  
#*Knowledge sharing and collaboration in translational research, and the DC-THERA Directory.
#@Andrea Splendiani,Michaela Gündel,Jonathan M. Austyn,Duccio Cavalieri,Ciro Scognamiglio,Marco Brandizi
#t2011
#cBriefings in Bioinformatics
#index3269388
#% 
#!
  
#*RNA tertiary structure prediction with ModeRNA.
#@Magdalena Rother,Kristian Rother,Tomasz Puton,Janusz M. Bujnicki
#t2011
#cBriefings in Bioinformatics
#index3269398
#% 
#!
  
#*Principal component analysis based methods in bioinformatics studies.
#@Shuangge Ma,Ying Dai
#t2011
#cBriefings in Bioinformatics
#index3269389
#% 
#!
  
#*Toward microRNA-mediated gene regulatory networks in plants.
#@Yijun Meng,Chaogang Shao,Ming Chen
#t2011
#cBriefings in Bioinformatics
#index3269397
#% 
#!
  
#*Critical assessment of high-throughput standalone methods for secondary structure prediction.
#@Hua Zhang,Tuo Zhang,Ke Chen,Kanaka Durga Kedarisetti,Marcin J. Mizianty,Qingbo Bao,Wojciech Stach,Lukasz A. Kurgan
#t2011
#cBriefings in Bioinformatics
#index3269390
#% 
#!
  
#*Combining literature text mining with microarray data: advances for system biology modeling.
#@Alberto Faro,Daniela Giordano,Concetto Spampinato
#t2012
#cBriefings in Bioinformatics
#index3320325
#% 
#!
  
#*Travelling the world of gene-gene interactions.
#@Kristel Van Steen
#t2012
#cBriefings in Bioinformatics
#index3320326
#% 
#!
  
#*Building an HIV data mashup using Bio2RDF.
#@Marc-Alexandre Nolin,Michel Dumontier,François Belleau,Jacques Corbeil
#t2012
#cBriefings in Bioinformatics
#index3320324
#% 
#!
  
#*Caveats and pitfalls of ROC analysis in clinical microarray research (and how to avoid them).
#@Daniel P. Berrar,Peter Flach
#t2012
#cBriefings in Bioinformatics
#index3320327
#% 
#!
  
#*A computational framework for the inheritance pattern of genomic imprinting for complex traits.
#@Chenguang Wang,Zhong Wang,Daniel R. Prows,Rongling Wu
#t2012
#cBriefings in Bioinformatics
#index3320328
#% 
#!
  
#*A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis.
#@Yijun Sun,Yunpeng Cai,Susan M. Huse,Rob Knight,William G. Farmerie,Xiaoyu Wang,Volker Mai
#t2012
#cBriefings in Bioinformatics
#index3320331
#% 
#!
  
#*Probabilistic graphical models for genetic association studies.
#@Raphaël Mourad,Christine Sinoquet,Philippe Leray
#t2012
#cBriefings in Bioinformatics
#index3320330
#% 
#!
  
#*The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy.
#@Ahmed Ragab Nabhan,Indra Neil Sarkar
#t2012
#cBriefings in Bioinformatics
#index3320332
#% 
#!
  
#*Tools for managing and analyzing microarray data.
#@André Koschmieder,Karin Zimmermann,Silke Trißl,Thomas Stoltmann,Ulf Leser
#t2012
#cBriefings in Bioinformatics
#index3320329
#% 
#!
  
#*Dissection of human MiRNA regulatory influence to subpathway.
#@Xia Li,Wei Jiang,Wei Li,Baofeng Lian,Shuyuan Wang,Mingzhi Liao,Xiaowen Chen,Yanqiu Wang,Yingli Lv,Shiyuan Wang,Lei Yang
#t2012
#cBriefings in Bioinformatics
#index3396170
#% 
#!
  
#*How to cluster gene expression dynamics in response to environmental signals.
#@Yakun Wang,Meng Xu,Zhong Wang,Ming Tao,Junjia Zhu,Li Wang,Runze Li,Scott A. Berceli,Rongling Wu
#t2012
#cBriefings in Bioinformatics
#index3396167
#% 
#!
  
#*Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data.
#@Francesca Finotello,Enrico Lavezzo,Paolo Fontana,Denis Peruzzo,Alessandro Albiero,Luisa Barzon,Marco Falda,Barbara Di Camillo,Stefano Toppo
#t2012
#cBriefings in Bioinformatics
#index3396152
#% 
#!
  
#*LEPSCAN - a web server for searching latent periodicity in DNA sequences.
#@Andrew Shelenkov,Eugene V. Korotkov
#t2012
#cBriefings in Bioinformatics
#index3396166
#% 
#!
  
#*Functional mapping of ontogeny in flowering plants.
#@Xiyang Zhao,Chunfa Tong,Xiaoming Pang,Zhong Wang,Yunqian Guo,Fang Du,Rongling Wu
#t2012
#cBriefings in Bioinformatics
#index3396171
#% 
#!
  
#*Toward more accurate pan-specific MHC-peptide binding prediction: a review of current methods and tools.
#@Lianming Zhang,Keiko Udaka,Hiroshi Mamitsuka,Shanfeng Zhu
#t2012
#cBriefings in Bioinformatics
#index3396153
#% 
#!
  
#*A review of statistical methods for prediction of proteolytic cleavage.
#@David duVerle,Hiroshi Mamitsuka
#t2012
#cBriefings in Bioinformatics
#index3396173
#% 
#!
  
#*Learning transcriptional regulation on a genome scale: a theoretical analysis based on gene expression data.
#@Ming Wu,Christina Chan
#t2012
#cBriefings in Bioinformatics
#index3396161
#% 
#!
  
#*Principles of Computational Modeling in NeuroscienceDavid Sterratt, Bruce Graham, Andrew Gillies and David Willshaw.
#@Li Shen
#t2012
#cBriefings in Bioinformatics
#index3396172
#% 
#!
  
#*Bioinformatics tools and database resources for systems genetics analysis in mice - a short review and an evaluation of future needs.
#@Caroline Durrant,Morris A. Swertz,Rudi Alberts,Danny Arends,Steffen Möller,Richard Mott,Pjotr Prins,K. Joeri van der Velde,Ritsert C. Jansen,Klaus Schughart
#t2012
#cBriefings in Bioinformatics
#index3396158
#% 
#!
  
#*A toolbox for developing bioinformatics software.
#@Kristian Rother,Wojciech Potrzebowski,Tomasz Puton,Magdalena Rother,Ewa Wywial,Janusz M. Bujnicki
#t2012
#cBriefings in Bioinformatics
#index3396159
#% 
#!
  
#*The relationship between rational drug design and drug side effects.
#@Juan Wang,Zhi-xin Li,Chengxiang Qiu,Dong Wang,Qinghua Cui
#t2012
#cBriefings in Bioinformatics
#index3396160
#% 
#!
  
#*Integration of Boolean models exemplified on hepatocyte signal transduction.
#@Rebekka Schlatter,Nicole Philippi,Gaby Wangorsch,Robert Pick,Oliver Sawodny,Christoph Borner,Jens Timmer,Michael Ederer,Thomas Dandekar
#t2012
#cBriefings in Bioinformatics
#index3396157
#% 
#!
  
#*Lessons from a decade of integrating cancer copy number alterations with gene expression profiles.
#@Norman Huang,Parantu K. Shah,Cheng Li
#t2012
#cBriefings in Bioinformatics
#index3396164
#% 
#!
  
#*Calculating transcription factor binding maps for chromatin.
#@Vladimir B. Teif,Karsten Rippe
#t2012
#cBriefings in Bioinformatics
#index3396163
#% 
#!
  
#*GO-function: deriving biologically relevant functions from statistically significant functions.
#@Jing Wang,Xianxiao Zhou,Jing Zhu,Yunyan Gu,Wenyuan Zhao,Jinfeng Zou,Zheng Guo
#t2012
#cBriefings in Bioinformatics
#index3396165
#% 
#!
  
#*Gene set enrichment analysis: performance evaluation and usage guidelines.
#@Jui-Hung Hung,Tun-Hsiang Yang,Zhenjun Hu,Zhiping Weng,Charles DeLisi
#t2012
#cBriefings in Bioinformatics
#index3396162
#% 
#!
  
#*Biological network motif detection: principles and practice.
#@Elisabeth Wong,Brittany Baur,Saad Quader,Chun-Hsi Huang
#t2012
#cBriefings in Bioinformatics
#index3396156
#% 
#!
  
#*Detecting coevolving positions in a molecule: why and how to account for phylogeny.
#@Julien Dutheil
#t2012
#cBriefings in Bioinformatics
#index3396174
#% 
#!
  
#*A practical guide for the computational selection of residues to be experimentally characterized in protein families.
#@Alfonso Benítez-Páez,Sonia Cárdenas-Brito,Andrés J. Gutiérrez
#t2012
#cBriefings in Bioinformatics
#index3396154
#% 
#!
  
#*Random forest Gini importance favours SNPs with large minor allele frequency: impact, sources and recommendations.
#@Anne-Laure Boulesteix,Andreas Bender,Justo Lorenzo Bermejo,Carolin Strobl
#t2012
#cBriefings in Bioinformatics
#index3396155
#% 
#!
  
#*Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.
#@Maria Victoria Schneider,Peter Walter,Marie-Claude Blatter,James Watson,Michelle D. Brazas,Kristian Rother,Aidan Budd,Allegra Via,Celia W. G. van Gelder,Joachim Jacob,Pedro Fernandes,Tommi H. Nyrönen,Javier De Las Rivas,Thomas Blicher,Rafael C. Jimenez,Jane Loveland,Jennifer McDowall,Philip Jones,Brendan W. Vaughan,Rodrigo Lopez,Teresa K. Attwood,Catherine Brooksbank
#t2012
#cBriefings in Bioinformatics
#index3396168
#% 
#!
  
#*Tutorial videos of bioinformatics resources: online distribution trial in Japan named TogoTV.
#@Shin Kawano,Hiromasa Ono,Toshihisa Takagi,Hidemasa Bono
#t2012
#cBriefings in Bioinformatics
#index3396169
#% 
#!
  
#*Mining the pharmacogenomics literature - a survey of the state of the art.
#@Udo Hahn,Kevin Bretonnel Cohen,Yael Garten,Nigam H. Shah
#t2012
#cBriefings in Bioinformatics
#index3482720
#% 
#!
  
#*Probe mapping across multiple microarray platforms.
#@Jeffrey D. Allen,Siling Wang,Min Chen,Luc Girard,John D. Minna,Yang Xie,Guanghua Xiao
#t2012
#cBriefings in Bioinformatics
#index3482706
#% 
#!
  
#*Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities.
#@Chang F. Quo,Chanchala Kaddi,John H. Phan,Amin Zollanvari,Mingqing Xu,May D. Wang,Gil Alterovitz
#t2012
#cBriefings in Bioinformatics
#index3482719
#% 
#!
  
#*Editorial: Current progress in Bioinformatics 2012.
#@Russ B. Altman
#t2012
#cBriefings in Bioinformatics
#index3482712
#% 
#!
  
#*Identification of aberrant pathways and network activities from high-throughput data.
#@Jinlian Wang,Yuji Zhang,Catalin Marian,Habtom W. Ressom
#t2012
#cBriefings in Bioinformatics
#index3482718
#% 
#!
  
#*Semantic similarity analysis of protein data: assessment with biological features and issues.
#@Pietro Hiram Guzzi,Marco Mina,Concettina Guerra,Mario Cannataro
#t2012
#cBriefings in Bioinformatics
#index3482717
#% 
#!
  
#*Protein inference: a review.
#@Ting Huang,Jingjing Wang,Weichuan Yu,Zengyou He
#t2012
#cBriefings in Bioinformatics
#index3482713
#% 
#!
  
#*Generic framework for high-dimensional fixed-effects ANOVA.
#@Age K. Smilde,Marieke E. Timmerman,Margriet M. W. B. Hendriks,Jeroen J. Jansen,Huub C. J. Hoefsloot
#t2012
#cBriefings in Bioinformatics
#index3482716
#% 
#!
  
#*Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life.
#@James A. Foster,John Bunge,Jack A. Gilbert,Jason H. Moore
#t2012
#cBriefings in Bioinformatics
#index3482710
#% 
#!
  
#*Multiscale modeling of macromolecular biosystems.
#@Samuel Flores,Julie Bernauer,Seokmin Shin,Ruhong Zhou,Xuhui Huang
#t2012
#cBriefings in Bioinformatics
#index3482722
#% 
#!
  
#*Affymetrix GeneChip microarray preprocessing for multivariate analyses.
#@Matthew N. McCall,Anthony Almudevar
#t2012
#cBriefings in Bioinformatics
#index3482715
#% 
#!
  
#*Interfaces to PeptideAtlas: a case study of standard data access systems.
#@Sarah A. Killcoyne,Jeremy Handcock,Thomas Robinson,Eric W. Deutsch,John Boyle
#t2012
#cBriefings in Bioinformatics
#index3482714
#% 
#!
  
#*Network biology methods integrating biological data for translational science.
#@Gürkan Bebek,Mehmet Koyutürk,Nathan D. Price,Mark R. Chance
#t2012
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#!
  
#*Bioinformatics for personal genome interpretation.
#@Emidio Capriotti,Nathan L. Nehrt,Maricel G. Kann,Yana Bromberg
#t2012
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#index3482708
#% 
#!
  
#*Adjusting confounders in ranking biomarkers: a model-based ROC approach.
#@Tao Yu,Jialiang Li,Shuangge Ma
#t2012
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#!
  
#*Bayesian inference for genomic imprinting underlying developmental characteristics.
#@Runqing Yang,Xin Wang,Yuehua Cui
#t2012
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#!
  
#*Hive plots - rational approach to visualizing networks.
#@Martin Krzywinski,Inanç Birol,Steven J. M. Jones,Marco A. Marra
#t2012
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#!
  
#*Data mining the human gut microbiota for therapeutic targets.
#@Matthew Collison,Robert P. Hirt,Anil Wipat,Sirintra Nakjang,Philippe Sanseau,James R. Brown
#t2012
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#!
  
#*Metagenomic analysis: the challenge of the data bonanza.
#@Chris I. Hunter,Alex Mitchell,Philip Jones,Craig McAnulla,Sebastien Pesseat,Maxim Scheremetjew,Sarah Hunter
#t2012
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#% 
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#*Editorial.
#@Gabriel Valiente,Graziano Pesole
#t2012
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#*Bioinformatic approaches for functional annotation and pathway inference in metagenomics data.
#@Carlotta De Filippo,Matteo Ramazzotti,Paolo Fontana,Duccio Cavalieri
#t2012
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#index3596416
#% 
#!
  
#*Reference databases for taxonomic assignment in metagenomics.
#@Monica Santamaria,Bruno Fosso,Arianna Consiglio,Giorgio De Caro,Giorgio Grillo,Flavio Licciulli,Sabino Liuni,Marinella Marzano,Daniel Alonso-Alemany,Gabriel Valiente,Graziano Pesole
#t2012
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#index3596408
#% 
#!
  
#*Taxonomic binning of metagenome samples generated by next-generation sequencing technologies.
#@Johannes Dr?ge,Alice Carolyn McHardy
#t2012
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#index3596407
#% 
#!
  
#*Current opportunities and challenges in microbial metagenome analysis - a bioinformatic perspective.
#@Hanno Teeling,Frank Oliver Gl?ckner
#t2012
#cBriefings in Bioinformatics
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#% 
#!
  
#*Functional assignment of metagenomic data: challenges and applications.
#@Tulika Prakash,Todd D. Taylor
#t2012
#cBriefings in Bioinformatics
#index3596413
#% 
#!
  
#*Classification of metagenomic sequences: methods and challenges.
#@Sharmila S. Mande,Monzoorul Haque Mohammed,Tarini Shankar Ghosh
#t2012
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#% 
#!
  
#*Computational systems biology and modeling of the human microbiome.
#@Elhanan Borenstein
#t2012
#cBriefings in Bioinformatics
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#% 
#!
  
#*Ultrafast clustering algorithms for metagenomic sequence analysis.
#@Weizhong Li,Limin Fu,Beifang Niu,Sitao Wu,John C. Wooley
#t2012
#cBriefings in Bioinformatics
#index3596412
#% 
#!
  
#*Gut microbiota: methodological aspects to describe taxonomy and functionality.
#@Catherine Ngom-Bru,Caroline Barretto
#t2012
#cBriefings in Bioinformatics
#index3596414
#% 
#!
  
#*A dynamic framework for quantifying the genetic architecture of phenotypic plasticity.
#@Zhong Wang,Xiaoming Pang,Yafei Lv,Fang Xu,Tao Zhou,Xin Li,Sisi Feng,Jiahan Li,Zhikang Li,Rongling Wu
#t2013
#cBriefings in Bioinformatics
#index3623192
#% 
#!
  
#*Detecting miRNAs in deep-sequencing data: a software performance comparison and evaluation.
#@Vernell Williamson,Albert Kim,Bin Xie,G. Omari McMichael,Yuan Gao,Vladimir Vladimirov
#t2013
#cBriefings in Bioinformatics
#index3623193
#% 
#!
  
#*Class-imbalanced classifiers for high-dimensional data.
#@Wei-Jiun Lin,James J. Chen
#t2013
#cBriefings in Bioinformatics
#index3623194
#% 
#!
  
#*Analysis of insertion-deletion from deep-sequencing data: software evaluation for optimal detection.
#@Joseph A. Neuman,Ofer Isakov,Noam Shomron
#t2013
#cBriefings in Bioinformatics
#index3623195
#% 
#!
  
#*Review of tandem repeat search tools: a systematic approach to evaluating algorithmic performance.
#@Kian Guan Lim,Chee Keong Kwoh,Li Yang Hsu,Adrianto Wirawan
#t2013
#cBriefings in Bioinformatics
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#% 
#!
  
#*Bioinformatics for Biologists. Edited by Pavel Pevzner and Ron Shamir.
#@Artem Zykovich
#t2013
#cBriefings in Bioinformatics
#index3623196
#% 
#!
  
#*The automatic annotation of bacterial genomes.
#@Emily J. Richardson,Mick Watson
#t2013
#cBriefings in Bioinformatics
#index3623200
#% 
#!
  
#*A unifying framework for bivalent multilocus linkage analysis of allotetraploids.
#@Xiaoxia Yang,Yafei Lv,Xiaoming Pang,Chunfa Tong,Zhong Wang,Xin Li,Sisi Feng,Christian M. Tobias,Rongling Wu
#t2013
#cBriefings in Bioinformatics
#index3623190
#% 
#!
  
#*Semantic Web meets Integrative Biology: a survey.
#@Huajun Chen,Tong Yu,Jake Y. Chen
#t2013
#cBriefings in Bioinformatics
#index3623197
#% 
#!
  
#*Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review.
#@Leo Lahti,Martin Sch?fer,Hans-Ulrich Klein,Silvio Bicciato,Martin Dugas
#t2013
#cBriefings in Bioinformatics
#index3623198
#% 
#!
  
#*A survey of error-correction methods for next-generation sequencing.
#@Xiao Yang,Sriram P. Chockalingam,Srinivas Aluru
#t2013
#cBriefings in Bioinformatics
#index3623191
#% 
#!
  
#*Dating the Age of the SIV Lineages That Gave Rise to HIV-1 and HIV-2.
#@Joel O. Wertheim,Michael Worobey
#t2009
#cPLoS Computational Biology
#index3371360
#% 
#!
  
#*The Role of Ongoing Dendritic Oscillations in Single-Neuron Dynamics.
#@Michiel W. H. Remme,Máté Lengyel,Boris S. Gutkin
#t2009
#cPLoS Computational Biology
#index3371443
#% 
#!
  
#*Reduction in Learning Rates Associated with Anterograde Interference Results from Interactions between Different Timescales in Motor Adaptation.
#@Gary C. Sing,Maurice A. Smith
#t2010
#cPLoS Computational Biology
#index3371433
#% 
#!
  
#*Topological Cluster Analysis Reveals the Systemic Organization of the Connectome.
#@Yunkyu Sohn,Myung-Kyu Choi,Yong-Yeol Ahn,Junho Lee,Jaeseung Jeong
#t2011
#cPLoS Computational Biology
#index3371683
#% 
#!
  
#*High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations.
#@Noriaki Okimoto,Noriyuki Futatsugi,Hideyoshi Fuji,Atsushi Suenaga,Gentaro Morimoto,Ryoko Yanai,Yousuke Ohno,Tetsu Narumi,Makoto Taiji
#t2009
#cPLoS Computational Biology
#index3371516
#% 
#!
  
#*Modeling Co-Expression across Species for Complex Traits: Insights to the Difference of Human and Mouse Embryonic Stem Cells.
#@Jun Cai,Dan Xie,Zhewen Fan,Hiram Chipperfield,John Marden,Wing H. Wong,Sheng Zhong
#t2010
#cPLoS Computational Biology
#index3371350
#% 
#!
  
#*Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites.
#@Timothy E. Reddy,Charles DeLisi,Boris E. Shakhnovich
#t2007
#cPLoS Computational Biology
#index3371795
#% 
#!
  
#*The Morphology of the Rat Vibrissal Array: A Model for Quantifying Spatiotemporal Patterns of Whisker-Object Contact.
#@R. Blythe Towal,Brian W. Quist,Venkatesh Gopal,Joseph H. Solomon,Mitra J. Z. Hartmann
#t2011
#cPLoS Computational Biology
#index3371739
#% 
#!
  
#*Inferring Function Using Patterns of Native Disorder in Proteins.
#@Anna E. Lobley,Mark B. Swindells,Christine A. Orengo,David T. Jones
#t2007
#cPLoS Computational Biology
#index3371583
#% 
#!
  
#*Neural Development Features: Spatio-Temporal Development of the Neuronal Network.
#@Sreedevi Varier,Marcus Kaiser
#t2011
#cPLoS Computational Biology
#index3371442
#% 
#!
  
#*In Silico Elucidation of the Molecular Mechanism Defining the Adverse Effect of Selective Estrogen Receptor Modulators.
#@Lei Xie,Jian Wang,Philip E. Bourne
#t2007
#cPLoS Computational Biology
#index3371612
#% 
#!
  
#*Biocurators: Contributors to the World of Science.
#@Philip E. Bourne,Johanna R. McEntyre
#t2006
#cPLoS Computational Biology
#index3371248
#% 
#!
  
#*Formation of Regulatory Modules by Local Sequence Duplication.
#@Armita Nourmohammad,Michael Lässig
#t2011
#cPLoS Computational Biology
#index3371397
#% 
#!
  
#*Predicted Functions of MdmX in Fine-Tuning the Response of p53 to DNA Damage.
#@Sohyoung Kim,Mirit I. Aladjem,Geoffrey B. McFadden,Kurt W. Kohn
#t2010
#cPLoS Computational Biology
#index3371563
#% 
#!
  
#*Sequence-Based Prediction for Vaccine Strain Selection and Identification of Antigenic Variability in Foot-and-Mouth Disease Virus.
#@Richard Reeve,Belinda Blignaut,Jan J. Esterhuysen,Pamela Opperman,Louise Matthews,Elizabeth E. Fry,Tjaart A. P. de Beer,Jacques Theron,Elizabeth Rieder,Wilna Vosloo,Hester G. O'Neill,Daniel T. Haydon,Francois F. Maree
#t2010
#cPLoS Computational Biology
#index3371479
#% 
#!
  
#*Latent Factor Analysis to Discover Pathway-Associated Putative Segmental Aneuploidies in Human Cancers.
#@Joseph E. Lucas,Hsiu-Ni Kung,Jen-Tsan A. Chi
#t2010
#cPLoS Computational Biology
#index3371542
#% 
#!
  
#*Shaping Embodied Neural Networks for Adaptive Goal-directed Behavior.
#@Zenas Chao,Douglas J. Bakkum,Steve M. Potter
#t2008
#cPLoS Computational Biology
#index3371725
#% 
#!
  
#*Efficient Algorithms for Probing the RNA Mutation Landscape.
#@Jérôme Waldispühl,Srinivas Devadas,Bonnie Berger,Peter Clote
#t2008
#cPLoS Computational Biology
#index3371369
#% 
#!
  
#*ISMB/ECCB 2007: The Premier Conference on Computational Biology.
#@Thomas Lengauer,B. J. Morrison McKay,Burkhard Rost
#t2007
#cPLoS Computational Biology
#index3371241
#% 
#!
  
#*A Third Measure-Metastable State in the Dynamics of Spontaneous Shape Change in Healthy Human's White Cells.
#@Karen A. Selz
#t2011
#cPLoS Computational Biology
#index3371498
#% 
#!
  
#*Ten Simple Rules for Organizing a Scientific Meeting.
#@Manuel Corpas,Nils Gehlenborg,Sarath Chandra Janga,Philip E. Bourne
#t2008
#cPLoS Computational Biology
#index3371781
#% 
#!
  
#*Evidence of Functional Protein Dynamics from X-Ray Crystallographic Ensembles.
#@Jonathan E. Kohn,Pavel V. Afonine,Jory Z. Ruscio,Paul D. Adams,Teresa Head-Gordon
#t2010
#cPLoS Computational Biology
#index3371682
#% 
#!
  
#*Complex Parameter Landscape for a Complex Neuron Model.
#@Pablo Achard,Erik De Schutter
#t2006
#cPLoS Computational Biology
#index3371266
#% 
#!
  
#*From Pathways Databases to Network Models of Switching Behavior.
#@Baltazar D. Aguda,Andrew B. Goryachev
#t2007
#cPLoS Computational Biology
#index3371689
#% 
#!
  
#*Human Visual Search Does Not Maximize the Post-Saccadic Probability of Identifying Targets.
#@Camille Morvan,Laurence T. Maloney
#t2012
#cPLoS Computational Biology
#index3371525
#% 
#!
  
#*Cell Size at S Phase Initiation: An Emergent Property of the G/S Network.
#@Matteo Barberis,Edda Klipp,Marco Vanoni,Lilia Alberghina
#t2007
#cPLoS Computational Biology
#index3371379
#% 
#!
  
#*Within- and Cross-Modal Distance Information Disambiguate Visual Size-Change Perception.
#@Peter W. Battaglia,Massimiliano Di Luca,Marc O. Ernst,Paul R. Schrater,Tonja Machulla,Daniel Kersten
#t2010
#cPLoS Computational Biology
#index3371322
#% 
#!
  
#*Design of Multi-Specificity in Protein Interfaces.
#@Elisabeth L. Humphris,Tanja Kortemme
#t2007
#cPLoS Computational Biology
#index3371654
#% 
#!
  
#*Nutritional Systems Biology Modeling: From Molecular Mechanisms to Physiology.
#@Albert A. de Graaf,Andreas P. Freidig,Baukje De Roos,Neema Jamshidi,Matthias Heinemann,Johan A. C. Rullmann,Kevin D. Hall,Martin Adiels,Ben van Ommen
#t2009
#cPLoS Computational Biology
#index3371646
#% 
#!
  
#*A Three Species Model to Simulate Application of Hyperbaric Oxygen Therapy to Chronic Wounds.
#@Jennifer A. Flegg,Donald L. S. McElwain,Helen M. Byrne,Ian W. Turner
#t2009
#cPLoS Computational Biology
#index3371717
#% 
#!
  
#*Stochastic De-repression of Rhodopsins in Single Photoreceptors of the Fly Retina.
#@Pranidhi Sood,Robert J. Johnston Jr.,Edo Kussell
#t2012
#cPLoS Computational Biology
#index3371378
#% 
#!
  
#*The Human Genomic Melting Map.
#@Fang Liu,Eivind Tøstesen,Jostein K. Sundet,Tor-Kristian Jenssen,Christoph Bock,Geir Ivar Jerstad,William G. Thilly,Eivind Hovig
#t2007
#cPLoS Computational Biology
#index3371508
#% 
#!
  
#*How Cations Can Assist DNase I in DNA Binding and Hydrolysis.
#@Marc Gueroult,Daniel Picot,Joséphine Abi-Ghanem,Brigitte Hartmann,Marc Baaden
#t2010
#cPLoS Computational Biology
#index3371816
#% 
#!
  
#*The Effects of Dominance on Leadership and Energetic Gain: A Dynamic Game between Pairs of Social Foragers.
#@Sean A. Rands
#t2011
#cPLoS Computational Biology
#index3371357
#% 
#!
  
#*Application of Biomarkers in Cancer Risk Management: Evaluation from Stochastic Clonal Evolutionary and Dynamic System Optimization Points of View.
#@Xiaohong Li,Patricia L. Blount,Thomas L. Vaughan,Brian J. Reid
#t2011
#cPLoS Computational Biology
#index3371533
#% 
#!
  
#*Effect of 1918 PB1-F2 Expression on Influenza A Virus Infection Kinetics.
#@Amber M. Smith,Frederick R. Adler,Julie L. McAuley,Ryan N. Gutenkunst,Ruy M. Ribeiro,Jonathan A. McCullers,Alan S. Perelson
#t2011
#cPLoS Computational Biology
#index3371423
#% 
#!
  
#*The Association of Tetrameric Acetylcholinesterase with ColQ Tail: A Block Normal Mode Analysis.
#@Deqiang Zhang,James Andrew McCammon
#t2005
#cPLoS Computational Biology
#index3371332
#% 
#!
  
#*Explicit Kinetic Heterogeneity: Mathematical Models for Interpretation of Deuterium Labeling of Heterogeneous Cell Populations.
#@Vitaly V. Ganusov,José A. M. Borghans,Rob J. De Boer
#t2010
#cPLoS Computational Biology
#index3371452
#% 
#!
  
#*Analysis of the Free-Energy Surface of Proteins from Reversible Folding Simulations.
#@Lucy R. Allen,Sergei V. Krivov,Emanuele Paci
#t2009
#cPLoS Computational Biology
#index3371696
#% 
#!
  
#*Circadian Phase Resetting via Single and Multiple Control Targets.
#@Neda Bagheri,Jörg Stelling,Francis J. Doyle III
#t2008
#cPLoS Computational Biology
#index3371323
#% 
#!
  
#*Mammalian Sleep Dynamics: How Diverse Features Arise from a Common Physiological Framework.
#@Andrew J. K. Phillips,Peter A. Robinson,David J. Kedziora,Romesh G. Abeysuriya
#t2010
#cPLoS Computational Biology
#index3371637
#% 
#!
  
#*A Minimal Model of Metabolism-Based Chemotaxis.
#@Matthew D. Egbert,Xabier E. Barandiaran,Ezequiel A. Di Paolo
#t2010
#cPLoS Computational Biology
#index3371598
#% 
#!
  
#*Designing Focused Chemical Libraries Enriched in Protein-Protein Interaction Inhibitors using Machine-Learning Methods.
#@Christelle Reynès,Hélène Host,Anne-Claude Camproux,Guillaume Laconde,Florence Leroux,Anne Mazars,Benoit Deprez,Robin Fahraeus,Bruno O. Villoutreix,Olivier Sperandio
#t2010
#cPLoS Computational Biology
#index3371469
#% 
#!
  
#*Self-Organization of Muscle Cell Structure and Function.
#@Anna Grosberg,Po-Ling Kuo,Chin-Lin Guo,Nicholas A. Geisse,Mark-Anthony Bray,William J. Adams,Sean P. Sheehy,Kevin Kit Parker
#t2011
#cPLoS Computational Biology
#index3371506
#% 
#!
  
#*Invariant Distribution of Promoter Activities in .
#@Alon Zaslaver,Shai Kaplan,Anat Bren,Adrian Jinich,Avi E. Mayo,Erez Dekel,Uri Alon,Shalev Itzkovitz
#t2009
#cPLoS Computational Biology
#index3371628
#% 
#!
  
#*A Density-Dependent Switch Drives Stochastic Clustering and Polarization of Signaling Molecules.
#@Alexandra Jilkine,Sigurd B. Angenent,Lani F. Wu,Steven J. Altschuler
#t2011
#cPLoS Computational Biology
#index3371269
#% 
#!
  
#*Machine Learning and Its Applications to Biology.
#@Adi L. Tarca,Vincent J. Carey,Xue-wen Chen,Roberto Romero,Sorin Draghici
#t2007
#cPLoS Computational Biology
#index3371552
#% 
#!
  
#*Maximal Extraction of Biological Information from Genetic Interaction Data.
#@Gregory W. Carter,David J. Galas,Timothy Galitski
#t2009
#cPLoS Computational Biology
#index3371664
#% 
#!
  
#*A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation.
#@Nicholas J. Hudson,Antonio Reverter,Brian P. Dalrymple
#t2009
#cPLoS Computational Biology
#index3371786
#% 
#!
  
#*Viral Population Estimation Using Pyrosequencing.
#@Nicholas Eriksson,Lior Pachter,Yumi Mitsuya,Soo-Yon Rhee,Chunlin Wang,Baback Gharizadeh,Mostafa Ronaghi,Robert W. Shafer,Niko Beerenwinkel
#t2008
#cPLoS Computational Biology
#index3371693
#% 
#!
  
#*Cohesive versus Flexible Evolution of Functional Modules in Eukaryotes.
#@Like Fokkens,Berend Snel
#t2009
#cPLoS Computational Biology
#index3371221
#% 
#!
  
#*Accurate Detection of Recombinant Breakpoints in Whole-Genome Alignments.
#@Oscar Westesson,Ian Holmes
#t2009
#cPLoS Computational Biology
#index3371712
#% 
#!
  
#*Power Efficiency of Outer Hair Cell Somatic Electromotility.
#@Richard D. Rabbitt,Sarah Clifford,Kathryn D. Breneman,Brenda Farrell,William E. Brownell
#t2009
#cPLoS Computational Biology
#index3371599
#% 
#!
  
#*Systematic Search for Recipes to Generate Induced Pluripotent Stem Cells.
#@Rui Chang,Robert Shoemaker,Wei Wang
#t2011
#cPLoS Computational Biology
#index3371489
#% 
#!
  
#*Local Orientation and the Evolution of Foraging: Changes in Decision Making Can Eliminate Evolutionary Trade-offs.
#@Daniel J. van der Post,Dirk Semmann
#t2011
#cPLoS Computational Biology
#index3371276
#% 
#!
  
#*ISCB Honors David Haussler and Aviv Regev.
#@Clare Sansom,B. J. Morrison McKay
#t2008
#cPLoS Computational Biology
#index3371608
#% 
#!
  
#*Why Are Computational Neuroscience and Systems Biology So Separate?
#@Erik De Schutter
#t2008
#cPLoS Computational Biology
#index3371647
#% 
#!
  
#*The Per2 Negative Feedback Loop Sets the Period in the Mammalian Circadian Clock Mechanism.
#@A. Katharina Wilkins,Paul I. Barton,Bruce Tidor
#t2007
#cPLoS Computational Biology
#index3371453
#% 
#!
  
#*Predictive Modeling of Signaling Crosstalk during Vulval Development.
#@Jasmin Fisher,Nir Piterman,Alex Hajnal,Thomas A. Henzinger
#t2007
#cPLoS Computational Biology
#index3371301
#% 
#!
  
#*Emergence of Switch-Like Behavior in a Large Family of Simple Biochemical Networks.
#@Dan Siegal-Gaskins,Maria Katherine Mejia-Guerra,Gregory D. Smith,Erich Grotewold
#t2011
#cPLoS Computational Biology
#index3371387
#% 
#!
  
#*The Effect of Macromolecular Crowding, Ionic Strength and Calcium Binding on Calmodulin Dynamics.
#@Qian Wang,Kao-Chen Liang,Arkadiusz Czader,M. Neal Waxham,Margaret S. Cheung
#t2011
#cPLoS Computational Biology
#index3371702
#% 
#!
  
#*Global and Local Architecture of the Mammalian microRNA-Transcription Factor Regulatory Network.
#@Reut Shalgi,Daniel Lieber,Moshe Oren,Yitzhak Pilpel
#t2007
#cPLoS Computational Biology
#index3371413
#% 
#!
  
#*Ten Simple Rules for Doing Your Best Research, According to Hamming.
#@Thomas C. Erren,Paul Cullen,Michael Erren,Philip E. Bourne
#t2007
#cPLoS Computational Biology
#index3371303
#% 
#!
  
#*How To Advance Open International Scientific Exchange.
#@Barbara Bryant
#t2008
#cPLoS Computational Biology
#index3371294
#% 
#!
  
#*A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation.
#@Sean R. Eddy
#t2008
#cPLoS Computational Biology
#index3371450
#% 
#!
  
#*Polarizable Water Model for the Coarse-Grained MARTINI Force Field.
#@Semen O. Yesylevskyy,Lars V. Schäfer,Durba Sengupta,Siewert J. Marrink
#t2010
#cPLoS Computational Biology
#index3371377
#% 
#!
  
#*Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++.
#@Eugene Davydov,David L. Goode,Marina Sirota,Gregory M. Cooper,Arend Sidow,Serafim Batzoglou
#t2010
#cPLoS Computational Biology
#index3371422
#% 
#!
  
#*Understanding the Origins of Bacterial Resistance to Aminoglycosides through Molecular Dynamics Mutational Study of the Ribosomal A-Site.
#@Julia Romanowska,James Andrew McCammon,Joanna Trylska
#t2011
#cPLoS Computational Biology
#index3371543
#% 
#!
  
#*I Am Not a Scientist, I Am a Number.
#@Philip E. Bourne,J. Lynn Fink
#t2008
#cPLoS Computational Biology
#index3371732
#% 
#!
  
#*DOGS: Reaction-Driven Design of Bioactive Compounds.
#@Markus Hartenfeller,Heiko Zettl,Miriam Walter,Matthias Rupp,Felix Reisen,Ewgenij Proschak,Sascha Weggen,Holger Stark,Gisbert Schneider
#t2012
#cPLoS Computational Biology
#index3371220
#% 
#!
  
#*Investigating CTL Mediated Killing with a 3D Cellular Automaton.
#@Frederik Graw,Roland R. Regoes
#t2009
#cPLoS Computational Biology
#index3371774
#% 
#!
  
#*Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions.
#@Rong Chen,Tara K. Sigdel,Li Li,Neeraja Kambham,Joel Dudley,Szu-chuan Hsieh,R. Bryan Klassen,Amery Chen,Tuyen Caohuu,Alexander A. Morgan,Hannah A. Valantine,Kiran K. Khush,Minnie M. Sarwal,Atul J. Butte
#t2010
#cPLoS Computational Biology
#index3371787
#% 
#!
  
#*Achieving Optimal Growth through Product Feedback Inhibition in Metabolism.
#@Sidhartha Goyal,Jie Yuan,Thomas Chen,Joshua D. Rabinowitz,Ned S. Wingreen
#t2010
#cPLoS Computational Biology
#index3371313
#% 
#!
  
#*Optimal Learning Rules for Discrete Synapses.
#@Adam B. Barrett,Mark C. W. van Rossum
#t2008
#cPLoS Computational Biology
#index3371759
#% 
#!
  
#*Seriation in Paleontological Data Using Markov Chain Monte Carlo Methods.
#@Kai Puolamäki,Mikael Fortelius,Heikki Mannila
#t2006
#cPLoS Computational Biology
#index3371729
#% 
#!
  
#*Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate.
#@Yu Xia,Eric A. Franzosa,Mark B. Gerstein
#t2009
#cPLoS Computational Biology
#index3371590
#% 
#!
  
#*The Drugome and Its Polypharmacological Implications.
#@Sarah L. Kinnings,Li Xie,Kingston H. Fung,Richard M. Jackson,Lei Xie,Philip E. Bourne
#t2010
#cPLoS Computational Biology
#index3371460
#% 
#!
  
#*Informed Switching Strongly Decreases the Prevalence of Antibiotic Resistance in Hospital Wards.
#@Roger D. Kouyos,Pia Abel zur Wiesch,Sebastian Bonhoeffer
#t2011
#cPLoS Computational Biology
#index3371703
#% 
#!
  
#*Adaptive Contact Networks Change Effective Disease Infectiousness and Dynamics.
#@Sven Van Segbroeck,Francisco C. Santos,Jorge M. Pacheco
#t2010
#cPLoS Computational Biology
#index3371231
#% 
#!
  
#*A Biocurator Perspective: Annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank.
#@Kyle Burkhardt,Bohdan Schneider,Jeramia Ory
#t2006
#cPLoS Computational Biology
#index3371617
#% 
#!
  
#*Active Nuclear Receptors Exhibit Highly Correlated AF-2 Domain Motions.
#@Denise G. Teotico,Monica L. Frazier,Feng Ding,Nikolay V. Dokholyan,Brenda R. S. Temple,Matthew R. Redinbo
#t2008
#cPLoS Computational Biology
#index3371404
#% 
#!
  
#*Game Theory of Social Distancing in Response to an Epidemic.
#@Timothy C. Reluga
#t2010
#cPLoS Computational Biology
#index3371398
#% 
#!
  
#*Sm/Lsm Genes Provide a Glimpse into the Early Evolution of the Spliceosome.
#@Stella Veretnik,Christopher Wills,Philippe Youkharibache,Ruben E. Valas,Philip E. Bourne
#t2009
#cPLoS Computational Biology
#index3371572
#% 
#!
  
#*Insights into the Evolution and Emergence of a Novel Infectious Disease.
#@Ruben J. Kubiak,Nimalan Arinaminpathy,Angela R. McLean
#t2010
#cPLoS Computational Biology
#index3371331
#% 
#!
  
#*Behavioral Sequence Analysis Reveals a Novel Role for ß2* Nicotinic Receptors in Exploration.
#@Nicolas Maubourguet,Annick Lesne,Jean-Pierre Changeux,Uwe Maskos,Philippe Faure
#t2008
#cPLoS Computational Biology
#index3371405
#% 
#!
  
#*The Rate of Beneficial Mutations Surfing on the Wave of a Range Expansion.
#@Rémi Lehe,Oskar Hallatschek,Luca Peliti
#t2012
#cPLoS Computational Biology
#index3371352
#% 
#!
  
#*The Binding of Learning to Action in Motor Adaptation.
#@Luis Nicolas Gonzalez Castro,Craig Bryant Monsen,Maurice A. Smith
#t2011
#cPLoS Computational Biology
#index3371526
#% 
#!
  
#*The Role of Conserved Waters in Conformational Transitions of Q61H K-ras.
#@Priyanka Prakash,Abdallah Sayyed-Ahmad,Alemayehu A. Gorfe
#t2012
#cPLoS Computational Biology
#index3371486
#% 
#!
  
#*Accurate and Fast Simulation of Channel Noise in Conductance-Based Model Neurons by Diffusion Approximation.
#@Daniele Linaro,Marco Storace,Michele Giugliano
#t2011
#cPLoS Computational Biology
#index3371638
#% 
#!
  
#*Support Vector Machines and Kernels for Computational Biology.
#@Asa Ben-Hur,Cheng Soon Ong,Sören Sonnenburg,Bernhard Schölkopf,Gunnar Rätsch
#t2008
#cPLoS Computational Biology
#index3371432
#% 
#!
  
#*Discovering Motifs in Ranked Lists of DNA Sequences.
#@Eran Eden,Doron Lipson,Sivan Yogev,Zohar Yakhini
#t2007
#cPLoS Computational Biology
#index3371673
#% 
#!
  
#*Quantitative Epistasis Analysis and Pathway Inference from Genetic Interaction Data.
#@Hilary Phenix,Katy Morin,Cory Batenchuk,Jacob Parker,Vida Abedi,Liu Yang,Lioudmila Tepliakova,Theodore J. Perkins,Mads Kærn
#t2011
#cPLoS Computational Biology
#index3371589
#% 
#!
  
#*SpaK/SpaR Two-component System Characterized by a Structure-driven Domain-fusion Method and Phosphorylation Studies.
#@Anu Chakicherla,Carol L. Ecale Zhou,Martha Ligon Dang,Virginia Rodriguez,J. Norman Hansen,Adam Zemla
#t2009
#cPLoS Computational Biology
#index3371562
#% 
#!
  
#*Increased Brain Signal Variability Accompanies Lower Behavioral Variability in Development.
#@Anthony Randal McIntosh,Natasa Kovacevic,Roxane J. Itier
#t2008
#cPLoS Computational Biology
#index3371468
#% 
#!
  
#*Smart Swarms of Bacteria-Inspired Agents with Performance Adaptable Interactions.
#@Adi Shklarsh,Gil Ariel,Elad Schneidman,Eshel Ben-Jacob
#t2011
#cPLoS Computational Biology
#index3371740
#% 
#!
  
#*Computational Modeling of Allosteric Communication Reveals Organizing Principles of Mutation-Induced Signaling in ABL and EGFR Kinases.
#@Anshuman Dixit,Gennady Verkhivker
#t2011
#cPLoS Computational Biology
#index3371515
#% 
#!
  
#*Minimal Mesoscale Model for Protein-Mediated Vesiculation in Clathrin-Dependent Endocytosis.
#@Neeraj J. Agrawal,Jonathan Nukpezah,Ravi Radhakrishnan
#t2010
#cPLoS Computational Biology
#index3371370
#% 
#!
  
#*Large-Scale Conformational Changes of Proline Racemase Predicted by Accelerated Molecular Dynamics Simulation.
#@César Augusto F. de Oliveira,Barry J. Grant,Michelle Zhou,James Andrew McCammon
#t2011
#cPLoS Computational Biology
#index3371544
#% 
#!
  
#*Noise and Robustness in Phyllotaxis.
#@Vincent Mirabet,Fabrice Besnard,Teva Vernoux,Arezki Boudaoud
#t2012
#cPLoS Computational Biology
#index3371815
#% 
#!
  
#*Modeling Magnification and Anisotropy in the Primate Foveal Confluence.
#@Mark M. Schira,Christopher W. Tyler,Branka Spehar,Michael Breakspear
#t2010
#cPLoS Computational Biology
#index3371471
#% 
#!
  
#*Mechanochemical Coupling in the Myosin Motor Domain. I. Insights from Equilibrium Active-Site Simulations.
#@Haibo Yu,Liang Ma,Yang Yang,Qiang Cui
#t2007
#cPLoS Computational Biology
#index3371296
#% 
#!
  
#*Bayesian Inference for Genomic Data Integration Reduces Misclassification Rate in Predicting Protein-Protein Interactions.
#@Chuanhua Xing,David B. Dunson
#t2011
#cPLoS Computational Biology
#index3371720
#% 
#!
  
#*Beyond Statistical Significance: Implications of Network Structure on Neuronal Activity.
#@Ioannis Vlachos,Ad Aertsen,Arvind Kumar
#t2012
#cPLoS Computational Biology
#index3371252
#% 
#!
  
#*Predicting Peptide Structures in Native Proteins from Physical Simulations of Fragments.
#@Vincent A. Voelz,M. Scott Shell,Ken A. Dill
#t2009
#cPLoS Computational Biology
#index3371509
#% 
#!
  
#*Evolutionarily Conserved Substrate Substructures for Automated Annotation of Enzyme Superfamilies.
#@Ranyee A. Chiang,Andrej Sali,Patricia C. Babbitt
#t2008
#cPLoS Computational Biology
#index3371571
#% 
#!
  
#*The Role of Environmental Transmission in Recurrent Avian Influenza Epidemics.
#@Romulus Breban,John M. Drake,David E. Stallknecht,Pejman Rohani
#t2009
#cPLoS Computational Biology
#index3371435
#% 
#!
  
#*Spontaneous Local Gamma Oscillation Selectively Enhances Neural Network Responsiveness.
#@Se-Bum Paik,Tribhawan Kumar,Donald A. Glaser
#t2009
#cPLoS Computational Biology
#index3371415
#% 
#!
  
#*Coordinated Concentration Changes of Transcripts and Metabolites in .
#@Patrick H. Bradley,Matthew J. Brauer,Joshua D. Rabinowitz,Olga G. Troyanskaya
#t2009
#cPLoS Computational Biology
#index3371321
#% 
#!
  
#*Prediction by Graph Theoretic Measures of Structural Effects in Proteins Arising from Non-Synonymous Single Nucleotide Polymorphisms.
#@Tammy M. K. Cheng,Yu-En Lu,Michele Vendruscolo,Pietro Liò,Tom L. Blundell
#t2008
#cPLoS Computational Biology
#index3371551
#% 
#!
  
#*A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes.
#@Cedric Chauve,Eric Tannier
#t2008
#cPLoS Computational Biology
#index3371684
#% 
#!
  
#*An Imperfect Dopaminergic Error Signal Can Drive Temporal-Difference Learning.
#@Wiebke Potjans,Markus Diesmann,Abigail Morrison
#t2011
#cPLoS Computational Biology
#index3371534
#% 
#!
  
#*Conditions Induce Faithful Encoding of Stimuli by Reducing Nonlinear Synchronization in Vestibular Sensory Neurons.
#@Adam D. Schneider,Kathleen Cullen,Maurice J. Chacron
#t2011
#cPLoS Computational Biology
#index3371287
#% 
#!
  
#*Evolution of Genetic Potential.
#@Lauren Ancel Meyers,Fredric D. Ancel,Michael Lachmann
#t2005
#cPLoS Computational Biology
#index3371314
#% 
#!
  
#*Understanding Auditory Spectro-Temporal Receptive Fields and Their Changes with Input Statistics by Efficient Coding Principles.
#@Lingyun Zhao,Zhaoping Li
#t2011
#cPLoS Computational Biology
#index3371261
#% 
#!
  
#*Mechanism of MicroRNA-Target Interaction: Molecular Dynamics Simulations and Thermodynamics Analysis.
#@Yonghua Wang,Yan Li,Zhi Ma,Wei Yang,Chunzhi Ai
#t2010
#cPLoS Computational Biology
#index3371655
#% 
#!
  
#*Folding Free Energies of 5′-UTRs Impact Post-Transcriptional Regulation on a Genomic Scale in Yeast.
#@Markus Ringnér,Morten Krogh
#t2005
#cPLoS Computational Biology
#index3371541
#% 
#!
  
#*Virus Replication Strategies and the Critical CTL Numbers Required for the Control of Infection.
#@Andrew J. Yates,Minus Van Baalen,Rustom Antia
#t2011
#cPLoS Computational Biology
#index3371581
#% 
#!
  
#*Protein-Protein Interaction Hotspots Carved into Sequences.
#@Yanay Ofran,Burkhard Rost
#t2007
#cPLoS Computational Biology
#index3371597
#% 
#!
  
#*Prediction of Protein Binding Regions in Disordered Proteins.
#@Bálint Mészáros,István Simon,Zsuzsanna Dosztányi
#t2009
#cPLoS Computational Biology
#index3371663
#% 
#!
  
#*BeadArray Expression Analysis Using Bioconductor.
#@Matthew E. Ritchie,Mark J. Dunning,Mike L. Smith,Wei Shi,Andy G. Lynch
#t2011
#cPLoS Computational Biology
#index3371380
#% 
#!
  
#*A Model Analysis of Arterial Oxygen Desaturation during Apnea in Preterm Infants.
#@Scott A. Sands,Bradley A. Edwards,Vanessa J. Kelly,Malcolm R. Davidson,Malcolm H. Wilkinson,Philip J. Berger
#t2009
#cPLoS Computational Biology
#index3371385
#% 
#!
  
#*ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun.
#@Ruiqiang Li,Jia Ye,Songgang Li,Jing Wang,Yujun Han,Chen Ye,Jian Wang,Huanming Yang,Jun Yu,Gane Ka-Shu Wong,Jun Wang
#t2005
#cPLoS Computational Biology
#index3371600
#% 
#!
  
#*Using Functional Signatures to Identify Repositioned Drugs for Breast, Myelogenous Leukemia and Prostate Cancer.
#@Daichi Shigemizu,Zhenjun Hu,Jui-Hung Hung,Chia-Ling Huang,Yajie Wang,Charles DeLisi
#t2012
#cPLoS Computational Biology
#index3371805
#% 
#!
  
#*Exploring Off-Targets and Off-Systems for Adverse Drug Reactions via Chemical-Protein Interactome - Clozapine-Induced Agranulocytosis as a Case Study.
#@Lun Yang,Kejian Wang,Jian Chen,Anil G. Jegga,Heng Luo,Leming Shi,Chunling Wan,Xizhi Guo,Shengying Qin,Guang He,Guoyin Feng,Lin He
#t2011
#cPLoS Computational Biology
#index3371545
#% 
#!
  
#*Exploring the Universe of Protein Structures beyond the Protein Data Bank.
#@Pilar Cossio,Antonio Trovato,Fabio Pietrucci,Flavio Seno,Amos Maritan,Alessandro Laio
#t2010
#cPLoS Computational Biology
#index3371645
#% 
#!
  
#*Unusual Intron Conservation near Tissue-Regulated Exons Found by Splicing Microarrays.
#@Charles W. Sugnet,Karpagam Srinivasan,Tyson Clark,Georgeann O'Brien,Melissa S. Cline,Hui Wang,Alan Williams,David Kulp,John Blume,David Haussler,Manuel Ares
#t2006
#cPLoS Computational Biology
#index3371394
#% 
#!
  
#*Modeling the Amplification Dynamics of Human Retrotransposons.
#@Dale J. Hedges,Richard Cordaux,Jinchuan Xing,David J. Witherspoon,Alan R. Rogers,Lynn B. Jorde,Mark A. Batzer
#t2005
#cPLoS Computational Biology
#index3371751
#% 
#!
  
#*Measuring Global Credibility with Application to Local Sequence Alignment.
#@Bobbie-Jo M. Webb-Robertson,Lee Ann McCue,Charles E. Lawrence
#t2008
#cPLoS Computational Biology
#index3371794
#% 
#!
  
#*Assimilating Seizure Dynamics.
#@Ghanim Ullah,Steven J. Schiff
#t2010
#cPLoS Computational Biology
#index3371343
#% 
#!
  
#*A Dynamical Systems Model for Combinatorial Cancer Therapy Enhances Oncolytic Adenovirus Efficacy by MEK-Inhibition.
#@Neda Bagheri,Marisa Shiina,Douglas A. Lauffenburger,W. Michael Korn
#t2011
#cPLoS Computational Biology
#index3371674
#% 
#!
  
#*Computational Prediction and Experimental Verification of New MAP Kinase Docking Sites and Substrates Including Gli Transcription Factors.
#@Thomas C. Whisenant,David T. Ho,Ryan W. Benz,Jeffrey S. Rogers,Robyn M. Kaake,Elizabeth A. Gordon,Lan Huang,Pierre Baldi,Lee Bardwell
#t2010
#cPLoS Computational Biology
#index3371737
#% 
#!
  
#*Nonlinear Gap Junctions Enable Long-Distance Propagation of Pulsating Calcium Waves in Astrocyte Networks.
#@Mati Goldberg,Maurizio De Pittà,Vladislav Volman,Hugues Berry,Eshel Ben-Jacob
#t2010
#cPLoS Computational Biology
#index3371324
#% 
#!
  
#*A Genome-Scale Metabolic Reconstruction of , PS189.
#@Patrick F. Suthers,Madhukar S. Dasika,Vinay Satish Kumar,Gennady Denisov,John I. Glass,Costas D. Maranas
#t2009
#cPLoS Computational Biology
#index3371596
#% 
#!
  
#*Revisiting Date and Party Hubs: Novel Approaches to Role Assignment in Protein Interaction Networks.
#@Sumeet Agarwal,Charlotte M. Deane,Mason A. Porter,Nick S. Jones
#t2010
#cPLoS Computational Biology
#index3371607
#% 
#!
  
#*Species Tree Inference by Minimizing Deep Coalescences.
#@Cuong Than,Luay Nakhleh
#t2009
#cPLoS Computational Biology
#index3371232
#% 
#!
  
#*From Spiking Neuron Models to Linear-Nonlinear Models.
#@Srdjan Ostojic,Nicolas Brunel
#t2011
#cPLoS Computational Biology
#index3371694
#% 
#!
  
#*Long-Range Periodic Patterns in Microbial Genomes Indicate Significant Multi-Scale Chromosomal Organization.
#@Timothy E. Allen,Nathan D. Price,Andrew R. Joyce,Bernhard Ø. Palsson
#t2006
#cPLoS Computational Biology
#index3371749
#% 
#!
  
#*The Eighth Annual Bio-Ontologies Meeting.
#@Phillip W. Lord,Robert Stevens,James A. Butler,Robin McEntire
#t2005
#cPLoS Computational Biology
#index3371704
#% 
#!
  
#*The Temporal Winner-Take-All Readout.
#@Maoz Shamir
#t2009
#cPLoS Computational Biology
#index3371627
#% 
#!
  
#*Shape, Size, and Robustness: Feasible Regions in the Parameter Space of Biochemical Networks.
#@Adel Dayarian,Madalena Chaves,Eduardo D. Sontag,Anirvan M. Sengupta
#t2009
#cPLoS Computational Biology
#index3371730
#% 
#!
  
#*Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks.
#@João F. Matias Rodrigues,Andreas Wagner
#t2009
#cPLoS Computational Biology
#index3371412
#% 
#!
  
#*Evolutionary Sequence Modeling for Discovery of Peptide Hormones.
#@M. Kemal Sönmez,Naunihal T. Zaveri,Ilan A. Kerman,Sharon Burke,Charles R. Neal,Xinmin Xie,Stanley J. Watson,Lawrence Toll
#t2009
#cPLoS Computational Biology
#index3371711
#% 
#!
  
#*A Survey of Genomic Properties for the Detection of Regulatory Polymorphisms.
#@Stephen Montgomery,Obi L. Griffith,Johanna M. Schuetz,Angela Brooks-Wilson,Steven J. M. Jones
#t2007
#cPLoS Computational Biology
#index3371274
#% 
#!
  
#*Finding the Way with a Noisy Brain.
#@Allen Cheung,Robert Vickerstaff
#t2010
#cPLoS Computational Biology
#index3371701
#% 
#!
  
#*Impact of Adaptation Currents on Synchronization of Coupled Exponential Integrate-and-Fire Neurons.
#@Josef Ladenbauer,Moritz Augustin,LieJune Shiau,Klaus Obermayer
#t2012
#cPLoS Computational Biology
#index3371554
#% 
#!
  
#*Managing and Analyzing Next-Generation Sequence Data.
#@Brent G. Richter,David P. Sexton
#t2009
#cPLoS Computational Biology
#index3371804
#% 
#!
  
#*Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence.
#@Wan Kyu Kim,Edward M. Marcotte
#t2008
#cPLoS Computational Biology
#index3371719
#% 
#!
  
#*The Eps8/IRSp53/VASP Network Differentially Controls Actin Capping and Bundling in Filopodia Formation.
#@Federico Vaggi,Andrea Disanza,Francesca Milanesi,Pier Paolo Di Fiore,Elisabetta Menna,Michela Matteoli,Nir S. Gov,Giorgio Scita,Andrea Ciliberto
#t2011
#cPLoS Computational Biology
#index3371505
#% 
#!
  
#*Stimulus-Dependent State Transition between Synchronized Oscillation and Randomly Repetitive Burst in a Model Cerebellar Granular Layer.
#@Takeru Honda,Tadashi Yamazaki,Shigeru Tanaka,Soichi Nagao,Tetsuro Nishino
#t2011
#cPLoS Computational Biology
#index3371454
#% 
#!
  
#*High-Precision, Validation of the Sequestration Mechanism for Generating Ultrasensitive Dose-Response Curves in Regulatory Networks.
#@Francesco Ricci,Alexis Vallée-Bélisle,Kevin W. Plaxco
#t2011
#cPLoS Computational Biology
#index3371496
#% 
#!
  
#*Predicting Transmembrane Helix Packing Arrangements using Residue Contacts and a Force-Directed Algorithm.
#@Timothy Nugent,David T. Jones
#t2010
#cPLoS Computational Biology
#index3371618
#% 
#!
  
#*Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Genomes.
#@Michael F. Lin,Ameya N. Deoras,Matthew D. Rasmussen,Manolis Kellis
#t2008
#cPLoS Computational Biology
#index3371824
#% 
#!
  
#*Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c- Recognition Site Binding and Function.
#@Yili Chen,Thomas W. Blackwell,Ji Chen,Jing Gao,Angel W. Lee,David J. States
#t2007
#cPLoS Computational Biology
#index3371338
#% 
#!
  
#*Model-Based Hypothesis Testing of Key Mechanisms in Initial Phase of Insulin Signaling.
#@Gunnar Cedersund,Jacob Roll,Erik Ulfhielm,Anna Danielsson,Henrik Tidefelt,Peter Strålfors
#t2008
#cPLoS Computational Biology
#index3371430
#% 
#!
  
#*Search Algorithms as a Framework for the Optimization of Drug Combinations.
#@Diego Calzolari,Stefania Bruschi,Laurence Coquin,Jennifer Schofield,Jacob D. Feala,John C. Reed,Andrew D. McCulloch,Giovanni Paternostro
#t2008
#cPLoS Computational Biology
#index3371540
#% 
#!
  
#*Computational Biology Resources Lack Persistence and Usability.
#@Stella Veretnik,J. Lynn Fink,Philip E. Bourne
#t2008
#cPLoS Computational Biology
#index3371316
#% 
#!
  
#*PERIOD-TIMELESS Interval Timer May Require an Additional Feedback Loop.
#@Robert S. Kuczenski,Kevin C. Hong,Jordi García-Ojalvo,Kelvin H. Lee
#t2007
#cPLoS Computational Biology
#index3371233
#% 
#!
  
#*Where Have All the Interactions Gone? Estimating the Coverage of Two-Hybrid Protein Interaction Maps.
#@Hailiang Huang,Bruno Jedynak,Joel S. Bader
#t2007
#cPLoS Computational Biology
#index3371681
#% 
#!
  
#*Ten Simple Rules for Selecting a Postdoctoral Position.
#@Philip E. Bourne,Iddo Friedberg
#t2006
#cPLoS Computational Biology
#index3371748
#% 
#!
  
#*How Cells Integrate Complex Stimuli: The Effect of Feedback from Phosphoinositides and Cell Shape on Cell Polarization and Motility.
#@Athanasius F. M. Marée,Verônica A. Grieneisen,Leah Edelstein-Keshet
#t2012
#cPLoS Computational Biology
#index3371531
#% 
#!
  
#*Mathematical Description of Bacterial Traveling Pulses.
#@Jonathan Saragosti,Vincent Calvez,Nikolaos Bournaveas,Axel Buguin,Pascal Silberzan,Benoit Perthame
#t2010
#cPLoS Computational Biology
#index3371485
#% 
#!
  
#*Avalanches in a Stochastic Model of Spiking Neurons.
#@Marc Benayoun,Jack D. Cowan,Wim van Drongelen,Edward Wallace
#t2010
#cPLoS Computational Biology
#index3371406
#% 
#!
  
#*Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts.
#@Francisco S. Roque,Peter B. Jensen,Henriette Schmock,Marlene Dalgaard,Massimo Andreatta,Thomas Hansen,Karen Søeby,Søren Bredkjær,Anders Juul,Thomas Werge,Lars Juhl Jensen,Søren Brunak
#t2011
#cPLoS Computational Biology
#index3371449
#% 
#!
  
#*Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer.
#@Ali Bashir,Stanislav Volik,Colin Collins,Vineet Bafna,Benjamin J. Raphael
#t2008
#cPLoS Computational Biology
#index3371344
#% 
#!
  
#*Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in .
#@Maria D. Chikina,Curtis Huttenhower,Coleen T. Murphy,Olga G. Troyanskaya
#t2009
#cPLoS Computational Biology
#index3371779
#% 
#!
  
#*Weak Noise in Neurons May Powerfully Inhibit the Generation of Repetitive Spiking but Not Its Propagation.
#@Henry C. Tuckwell,Jürgen Jost
#t2010
#cPLoS Computational Biology
#index3371440
#% 
#!
  
#*A Quick Guide to Large-Scale Genomic Data Mining.
#@Curtis Huttenhower,Oliver Hofmann
#t2010
#cPLoS Computational Biology
#index3371685
#% 
#!
  
#*Structure of Protein Interaction Networks and Their Implications on Drug Design.
#@Takeshi Hase,Hiroshi Tanaka,Yasuhiro Suzuki,So Nakagawa,Hiroaki Kitano
#t2009
#cPLoS Computational Biology
#index3371738
#% 
#!
  
#*Circadian Rhythmicity by Autocatalysis.
#@Arun Mehra,Christian I. Hong,Mi Shi,Jennifer J. Loros,Jay C. Dunlap,Peter Ruoff
#t2006
#cPLoS Computational Biology
#index3371267
#% 
#!
  
#*DARPP-32 Is a Robust Integrator of Dopamine and Glutamate Signals.
#@Éric Fernandez,Renaud Schiappa,Jean-Antoine Girault,Nicolas Le Novère
#t2006
#cPLoS Computational Biology
#index3371656
#% 
#!
  
#*A Dynamical Systems Hypothesis of Schizophrenia.
#@Marco Loh,Edmund T. Rolls,Gustavo Deco
#t2007
#cPLoS Computational Biology
#index3371366
#% 
#!
  
#*Segregation of the Brain into Gray and White Matter: A Design Minimizing Conduction Delays.
#@Quan Wen,Dmitri B. Chklovskii
#t2005
#cPLoS Computational Biology
#index3371582
#% 
#!
  
#*Astrocytes Optimize the Synaptic Transmission of Information.
#@Suhita Nadkarni,Peter Jung,Herbert Levine
#t2008
#cPLoS Computational Biology
#index3371307
#% 
#!
  
#*Comprehensive Modelling of the Circadian Clock and Its Temperature Compensation.
#@Yu-Yao Tseng,Suzanne M. Hunt,Christian Heintzen,Susan K. Crosthwaite,Jean-Marc Schwartz
#t2012
#cPLoS Computational Biology
#index3371588
#% 
#!
  
#*Contact-Inhibited Chemotaxis in De Novo and Sprouting Blood-Vessel Growth.
#@Roeland Merks,Erica D. Perryn,Abbas Shirinifard,James A. Glazier
#t2008
#cPLoS Computational Biology
#index3371491
#% 
#!
  
#*Steady-State Kinetic Modeling Constrains Cellular Resting States and Dynamic Behavior.
#@Jeremy E. Purvis,Ravi Radhakrishnan,Scott L. Diamond
#t2009
#cPLoS Computational Biology
#index3371615
#% 
#!
  
#*A Tale of Two Stories: Astrocyte Regulation of Synaptic Depression and Facilitation.
#@Maurizio De Pittà,Vladislav Volman,Hugues Berry,Eshel Ben-Jacob
#t2011
#cPLoS Computational Biology
#index3371239
#% 
#!
  
#*Reinforcement Learning on Slow Features of High-Dimensional Input Streams.
#@Robert A. Legenstein,Niko Wilbert,Laurenz Wiskott
#t2010
#cPLoS Computational Biology
#index3371490
#% 
#!
  
#*Computational and Experimental Analysis of Redundancy in the Central Metabolism of .
#@Daniel Segura,Radhakrishnan Mahadevan,Katy Juarez,Derek R. Lovley
#t2008
#cPLoS Computational Biology
#index3371510
#% 
#!
  
#*Identification and Classification of Conserved RNA Secondary Structures in the Human Genome.
#@Jakob Skou Pedersen,Gill Bejerano,Adam C. Siepel,Kate R. Rosenbloom,Kerstin Lindblad-Toh,Eric S. Lander,Jim Kent,Webb Miller,David Haussler
#t2006
#cPLoS Computational Biology
#index3371648
#% 
#!
  
#*On the Origins of the Weak Folding Cooperativity of a Designed ββα Ultrafast Protein FSD-1.
#@Chun Wu,Joan-Emma Shea
#t2010
#cPLoS Computational Biology
#index3371671
#% 
#!
  
#*Toward a Detailed Description of the Thermally Induced Dynamics of the Core Promoter.
#@Boian S. Alexandrov,Vladimir Gelev,Sang Wook Yoo,Alan R. Bishop,Kim Ø. Rasmussen,Anny Usheva
#t2009
#cPLoS Computational Biology
#index3371579
#% 
#!
  
#*Intronic Alternative Splicing Regulators Identified by Comparative Genomics in Nematodes.
#@Jennifer L. Kabat,Sergio Barberan-Soler,Paul McKenna,Hiram Clawson,Tracy Farrer,Alan M. Zahler
#t2006
#cPLoS Computational Biology
#index3371455
#% 
#!
  
#*A Stochastic Model of Latently Infected Cell Reactivation and Viral Blip Generation in Treated HIV Patients.
#@Jessica M. Conway,Daniel Coombs
#t2011
#cPLoS Computational Biology
#index3371260
#% 
#!
  
#*Assessing Vaccination Sentiments with Online Social Media: Implications for Infectious Disease Dynamics and Control.
#@Marcel Salathé,Shashank Khandelwal
#t2011
#cPLoS Computational Biology
#index3371564
#% 
#!
  
#*Self-Organized Criticality in Developing Neuronal Networks.
#@Christian Tetzlaff,Samora Okujeni,Ulrich Egert,Florentin Wörgötter,Markus Butz
#t2010
#cPLoS Computational Biology
#index3371630
#% 
#!
  
#*Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods.
#@Adrian M. Altenhoff,Christophe Dessimoz
#t2009
#cPLoS Computational Biology
#index3371758
#% 
#!
  
#*Network Model of Immune Responses Reveals Key Effectors to Single and Co-infection Dynamics by a Respiratory Bacterium and a Gastrointestinal Helminth.
#@Juilee Thakar,Ashutosh K. Pathak,Lisa Murphy,Réka Albert,Isabella M. Cattadori
#t2012
#cPLoS Computational Biology
#index3371518
#% 
#!
  
#*A Detailed History of Intron-rich Eukaryotic Ancestors Inferred from a Global Survey of 100 Complete Genomes.
#@Miklós Csürös,Igor B. Rogozin,Eugene V. Koonin
#t2011
#cPLoS Computational Biology
#index3371769
#% 
#!
  
#*Synaptic Learning Rules and Sparse Coding in a Model Sensory System.
#@Luca A. Finelli,Seth Haney,Maxim Bazhenov,Mark Stopfer,Terrence J. Sejnowski
#t2008
#cPLoS Computational Biology
#index3371476
#% 
#!
  
#*Neural Coding of Natural Stimuli: Information at Sub-Millisecond Resolution.
#@Ilya Nemenman,Geoffrey D. Lewen,William Bialek,Robert R. de Ruyter van Steveninck
#t2008
#cPLoS Computational Biology
#index3371351
#% 
#!
  
#*Evolution of Evolvability in Gene Regulatory Networks.
#@Anton Crombach,Paulien Hogeweg
#t2008
#cPLoS Computational Biology
#index3371561
#% 
#!
  
#*The Biocurator: Connecting and Enhancing Scientific Data.
#@Nima Salimi,Randi Vita
#t2006
#cPLoS Computational Biology
#index3371497
#% 
#!
  
#*ISCB Honors Michael S. Waterman and Mathieu Blanchette.
#@Merry Maisel
#t2006
#cPLoS Computational Biology
#index3371470
#% 
#!
  
#*On the Accessibility of Adaptive Phenotypes of a Bacterial Metabolic Network.
#@Wilfred Ndifon,Joshua B. Plotkin,Jonathan Dushoff
#t2009
#cPLoS Computational Biology
#index3371463
#% 
#!
  
#*Adjusting Phenotypes by Noise Control.
#@Kyung H. Kim,Herbert M. Sauro
#t2012
#cPLoS Computational Biology
#index3371601
#% 
#!
  
#*The Modular Organization of Domain Structures: Insights into Protein-Protein Binding.
#@Antonio del Sol,Pablo Carbonell
#t2007
#cPLoS Computational Biology
#index3371565
#% 
#!
  
#*A Dynamic Model of Interactions of Ca, Calmodulin, and Catalytic Subunits of Ca/Calmodulin-Dependent Protein Kinase II.
#@Shirley Pepke,Tamara Kinzer-Ursem,Stefan Mihalas,Mary B. Kennedy
#t2010
#cPLoS Computational Biology
#index3371427
#% 
#!
  
#*ON/OFF and Beyond - A Boolean Model of Apoptosis.
#@Rebekka Schlatter,Kathrin Schmich,Ima Avalos Vizcarra,Peter Scheurich,Thomas Sauter,Christoph Borner,Michael Ederer,Irmgard Merfort,Oliver Sawodny
#t2009
#cPLoS Computational Biology
#index3371246
#% 
#!
  
#*Estimating Cell Depth from Somatic Mutations.
#@Adam Wasserstrom,Dan Frumkin,Rivka Adar,Shalev Itzkovitz,Tomer Stern,Shai Kaplan,Gabi Shefer,Irena Shur,Lior Zangi,Yitzhak Reizel,Alon Harmelin,Yuval Dor,Nava Dekel,Yair Reisner,Dafna Benayahu,Eldad Tzahor,Eran Segal,Ehud Y. Shapiro
#t2008
#cPLoS Computational Biology
#index3371793
#% 
#!
  
#*Model of Transcriptional Activation by MarA in .
#@Michael E. Wall,David A. Markowitz,Judah L. Rosner,Robert G. Martin
#t2009
#cPLoS Computational Biology
#index3371768
#% 
#!
  
#*An Analysis of Enzyme Kinetics Data for Mitochondrial DNA Strand Termination by Nucleoside Reverse Transcription Inhibitors.
#@Katherine V. Wendelsdorf,Zhuo Song,Yang Cao,David C. Samuels
#t2009
#cPLoS Computational Biology
#index3371635
#% 
#!
  
#*In Memoriam: Rolf Kötter (1961-2010).
#@Klaas Enno Stephan,Anthony Randal McIntosh,Claus C. Hilgetag
#t2010
#cPLoS Computational Biology
#index3371574
#% 
#!
  
#*Geometric Theory Predicts Bifurcations in Minimal Wiring Cost Trees in Biology Are Flat.
#@Yihwa Kim,Robert Sinclair,Nol Chindapol,Jaap A. Kaandorp,Erik De Schutter
#t2012
#cPLoS Computational Biology
#index3371523
#% 
#!
  
#*Stochastic Drift in Mitochondrial DNA Point Mutations: A Novel Perspective .
#@Suresh Kumar Poovathingal,Jan Gruber,Barry Halliwell,Rudiyanto Gunawan
#t2009
#cPLoS Computational Biology
#index3371337
#% 
#!
  
#*Changing Cellular Location of CheZ Predicted by Molecular Simulations.
#@Karen Lipkow
#t2006
#cPLoS Computational Biology
#index3371610
#% 
#!
  
#*The Roots of Bioinformatics in Protein Evolution.
#@Russell F. Doolittle
#t2010
#cPLoS Computational Biology
#index3371649
#% 
#!
  
#*Are There Rearrangement Hotspots in the Human Genome?
#@Max A. Alekseyev,Pavel A. Pevzner
#t2007
#cPLoS Computational Biology
#index3371253
#% 
#!
  
#*NIH Roadmap Interdisciplinary Research Initiatives.
#@Michael F. Huerta,Gregory K. Farber,Elizabeth L. Wilder,Dushanka V. Kleinman,Patricia A. Grady,David A. Schwartz,Lawrence A. Tabak
#t2005
#cPLoS Computational Biology
#index3371680
#% 
#!
  
#*Ten Simple Rules for Developing a Short Bioinformatics Training Course.
#@Allegra Via,Javier De Las Rivas,Teresa K. Attwood,David Landsman,Michelle D. Brazas,Jack A. M. Leunissen,Anna Tramontano,Maria Victoria Schneider
#t2011
#cPLoS Computational Biology
#index3371504
#% 
#!
  
#*Scalable Rule-Based Modelling of Allosteric Proteins and Biochemical Networks.
#@Julien F. Ollivier,Vahid Shahrezaei,Peter S. Swain
#t2010
#cPLoS Computational Biology
#index3371372
#% 
#!
  
#*Detecting Coevolution in and among Protein Domains.
#@Chen-Hsiang Yeang,David Haussler
#t2007
#cPLoS Computational Biology
#index3371295
#% 
#!
  
#*Divisive Gain Modulation with Dynamic Stimuli in Integrate-and-Fire Neurons.
#@Cheng Ly,Brent Doiron
#t2009
#cPLoS Computational Biology
#index3371365
#% 
#!
  
#*Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data.
#@Joost J. J. van Durme,Sebastian Maurer-Stroh,Rodrigo Gallardo,Hannah Wilkinson,Frederic Rousseau,Joost Schymkowitz
#t2009
#cPLoS Computational Biology
#index3371595
#% 
#!
  
#*The FGGY Carbohydrate Kinase Family: Insights into the Evolution of Functional Specificities.
#@Ying Zhang,Olga Zagnitko,Irina Rodionova,Andrei Osterman,Adam Godzik
#t2011
#cPLoS Computational Biology
#index3371407
#% 
#!
  
#*ISMB 2005 Conference Report.
#@B. J. Morrison McKay
#t2005
#cPLoS Computational Biology
#index3371722
#% 
#!
  
#*Genome-Wide Functional Divergence after the Symbiosis of Proteobacteria with Insects Unraveled through a Novel Computational Approach.
#@Christina Toft,Tom A. Williams,Mario A. Fares
#t2009
#cPLoS Computational Biology
#index3371391
#% 
#!
  
#*Quantitative Analysis of Immune Response and Erythropoiesis during Rodent Malarial Infection.
#@Martin R. Miller,Lars Råberg,Andrew F. Read,Nicholas J. Savill
#t2010
#cPLoS Computational Biology
#index3371308
#% 
#!
  
#*Investigation of the Interaction between the Large and Small Subunits of Potato ADP-Glucose Pyrophosphorylase.
#@Ibrahim Baris,Aytug Tuncel,Natali Ozber,Ozlem Keskin,I. Halil Kavakli
#t2009
#cPLoS Computational Biology
#index3371282
#% 
#!
  
#*Both Ligand- and Cell-Specific Parameters Control Ligand Agonism in a Kinetic Model of G Protein-Coupled Receptor Signaling.
#@Tamara Kinzer-Ursem,Jennifer J. Linderman
#t2007
#cPLoS Computational Biology
#index3371691
#% 
#!
  
#*Automatic Assignment of EC Numbers.
#@Volker Egelhofer,Ida Schomburg,Dietmar Schomburg
#t2010
#cPLoS Computational Biology
#index3371288
#% 
#!
  
#*Non-Centered Spike-Triggered Covariance Analysis Reveals Neurotrophin-3 as a Developmental Regulator of Receptive Field Properties of ON-OFF Retinal Ganglion Cells.
#@Donald R. Cantrell,Jianhua Cang,John B. Troy,Xiaorong Liu
#t2010
#cPLoS Computational Biology
#index3371750
#% 
#!
  
#*Cooperation is Fleeting in the World of Transposable Elements.
#@Andreas Wagner
#t2006
#cPLoS Computational Biology
#index3371546
#% 
#!
  
#*Comparative Genomics and Disorder Prediction Identify Biologically Relevant SH3 Protein Interactions.
#@Pedro Beltrão,Luis Serrano
#t2005
#cPLoS Computational Biology
#index3371700
#% 
#!
  
#*Discovery and Annotation of Functional Chromatin Signatures in the Human Genome.
#@Gary Hon,Wei Wang,Bing Ren
#t2009
#cPLoS Computational Biology
#index3371644
#% 
#!
  
#*Probabilistic Inference in General Graphical Models through Sampling in Stochastic Networks of Spiking Neurons.
#@Dejan Pecevski,Lars Buesing,Wolfgang Maass
#t2011
#cPLoS Computational Biology
#index3371560
#% 
#!
  
#*A Comprehensive Model of the Spatio-Temporal Stem Cell and Tissue Organisation in the Intestinal Crypt.
#@Peter Buske,Jörg Galle,Nick Barker,Gabriela Aust,Hans Clevers,Markus Loeffler
#t2011
#cPLoS Computational Biology
#index3371825
#% 
#!
  
#*An Introduction to Bioinformatics for Glycomics Research.
#@Kiyoko F. Aoki-Kinoshita
#t2008
#cPLoS Computational Biology
#index3371807
#% 
#!
  
#*From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer Research.
#@Jomol P. Mathew,Barry S. Taylor,Gary D. Bader,Saiju Pyarajan,Marco Antoniotti,Arul M. Chinnaiyan,Chris Sander,Steven J. Burakoff,Bud Mishra
#t2007
#cPLoS Computational Biology
#index3371657
#% 
#!
  
#*A Simple Self-Maintaining Metabolic System: Robustness, Autocatalysis, Bistability.
#@Gabriel Piedrafita,Francisco Montero,Federico Morán,María Luz Cárdenas,Athel Cornish-Bowden
#t2010
#cPLoS Computational Biology
#index3371812
#% 
#!
  
#*Optimization of Muscle Activity for Task-Level Goals Predicts Complex Changes in Limb Forces across Biomechanical Contexts.
#@J. Lucas McKay,Lena H. Ting
#t2012
#cPLoS Computational Biology
#index3371666
#% 
#!
  
#*Analysis of Stochastic Strategies in Bacterial Competence: A Master Equation Approach.
#@Sandra H. Dandach,Mustafa Khammash
#t2010
#cPLoS Computational Biology
#index3371553
#% 
#!
  
#*Potential Energy Landscape and Robustness of a Gene Regulatory Network: Toggle Switch.
#@Keun-Young Kim,Jin Wang
#t2007
#cPLoS Computational Biology
#index3371371
#% 
#!
  
#*Can Influenza Epidemics Be Prevented by Voluntary Vaccination?
#@Raffaele Vardavas,Romulus Breban,Sally Blower
#t2007
#cPLoS Computational Biology
#index3371315
#% 
#!
  
#*Self versus Environment Motion in Postural Control.
#@Kalpana Dokka,Robert V. Kenyon,Emily A. Keshner,Konrad P. Kording
#t2010
#cPLoS Computational Biology
#index3371462
#% 
#!
  
#*Modeling Recursive RNA Interference.
#@Wallace F. Marshall
#t2008
#cPLoS Computational Biology
#index3371517
#% 
#!
  
#*NHE Inhibition Does Not Improve Na or Ca Overload During Reperfusion: Using Modeling to Illuminate the Mechanisms Underlying a Therapeutic Failure.
#@Byron N. Roberts,David J. Christini
#t2011
#cPLoS Computational Biology
#index3371235
#% 
#!
  
#*FLORA: A Novel Method to Predict Protein Function from Structure in Diverse Superfamilies.
#@Oliver Redfern,Benoit H. Dessailly,Timothy Dallman,Ian Sillitoe,Christine A. Orengo
#t2009
#cPLoS Computational Biology
#index3371757
#% 
#!
  
#*Key Role of Local Regulation in Chemosensing Revealed by a New Molecular Interaction-Based Modeling Method.
#@Martin Meier-Schellersheim,Xuehua Xu,Bastian Angermann,Eric J. Kunkel,Tian Jin,Ronald N. Germain
#t2007
#cPLoS Computational Biology
#index3371477
#% 
#!
  
#*Crawling Cells Can Close Wounds without Purse Strings or Signaling.
#@Pilhwa Lee,Charles W. Wolgemuth
#t2011
#cPLoS Computational Biology
#index3371727
#% 
#!
  
#*Quantification of Local Morphodynamics and Local GTPase Activity by Edge Evolution Tracking.
#@Yuki Tsukada,Kazuhiro Aoki,Takeshi Nakamura,Yuichi Sakumura,Michiyuki Matsuda,Shin Ishii
#t2008
#cPLoS Computational Biology
#index3371386
#% 
#!
  
#*Why is Real-World Visual Object Recognition Hard?
#@Nicolas Pinto,David D. Cox,James J. DiCarlo
#t2008
#cPLoS Computational Biology
#index3371672
#% 
#!
  
#*Correction: Ten Simple Rules for Selecting a Postdoctoral Position.
#@Philip E. Bourne,Iddo Friedberg
#t2006
#cPLoS Computational Biology
#index3371532
#% 
#!
  
#*Intrinsic Disorder Is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes.
#@Chad Haynes,Christopher J. Oldfield,Fei Ji,Niels Klitgord,Michael E. Cusick,Predrag Radivojac,Vladimir N. Uversky,Marc Vidal,Lilia M. Iakoucheva
#t2006
#cPLoS Computational Biology
#index3371629
#% 
#!
  
#*Combining Structural Connectivity and Response Latencies to Model the Structure of the Visual System.
#@Michael Capalbo,Eric Postma,Rainer Goebel
#t2008
#cPLoS Computational Biology
#index3371770
#% 
#!
  
#*A Novel Scoring Approach for Protein Co-Purification Data Reveals High Interaction Specificity.
#@Xueping Yu,Joseph Ivanic,Anders Wallqvist,Jaques Reifman
#t2009
#cPLoS Computational Biology
#index3371771
#% 
#!
  
#*How to Get the Most out of Your Curation Effort.
#@Andrey Rzhetsky,Hagit Shatkay,W. John Wilbur
#t2009
#cPLoS Computational Biology
#index3371679
#% 
#!
  
#*Entropy Measures Quantify Global Splicing Disorders in Cancer.
#@William Ritchie,Samuel Granjeaud,Denis Puthier,Daniel Gautheret
#t2008
#cPLoS Computational Biology
#index3371420
#% 
#!
  
#*Using Entropy Maximization to Understand the Determinants of Structural Dynamics beyond Native Contact Topology.
#@Timothy R. Lezon,Ivet Bahar
#t2010
#cPLoS Computational Biology
#index3371272
#% 
#!
  
#*Correction: Improving the Precision of the Structure-Function Relationship by Considering Phylogenetic Context.
#@Boris E. Shakhnovich
#t2005
#cPLoS Computational Biology
#index3371792
#% 
#!
  
#*Ten Simple Rules for Building and Maintaining a Scientific Reputation.
#@Philip E. Bourne,Virginia Barbour
#t2011
#cPLoS Computational Biology
#index3371298
#% 
#!
  
#*Cooperative Gating and Spatial Organization of Membrane Proteins through Elastic Interactions.
#@Tristan Ursell,Kerwyn Casey Huang,Eric L. Peterson,Rob Phillips
#t2007
#cPLoS Computational Biology
#index3371271
#% 
#!
  
#*An Integrative -omics Approach to Identify Functional Sub-Networks in Human Colorectal Cancer.
#@Rod K. Nibbe,Mehmet Koyutürk,Mark R. Chance
#t2010
#cPLoS Computational Biology
#index3371399
#% 
#!
  
#*A View from the Dark Side.
#@David B. Searls
#t2007
#cPLoS Computational Biology
#index3371330
#% 
#!
  
#*Rescuing Loading Induced Bone Formation at Senescence.
#@Sundar Srinivasan,Brandon J. Ausk,Jitendra Prasad,Dewayne Threet,Steven D. Bain,Thomas S. Richardson,Ted S. Gross
#t2010
#cPLoS Computational Biology
#index3371806
#% 
#!
  
#*Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope.
#@Art F. Y. Poon,Fraser I. Lewis,Sergei L. Kosakovsky Pond,Simon D. W. Frost
#t2007
#cPLoS Computational Biology
#index3371414
#% 
#!
  
#*Automated Protein Subfamily Identification and Classification.
#@Duncan P. Brown,Nandini Krishnamurthy,Kimmen Sjölander
#t2007
#cPLoS Computational Biology
#index3371827
#% 
#!
  
#*Characterization and Identification of MicroRNA Core Promoters in Four Model Species.
#@Xuefeng Zhou,Jianhua Ruan,Guandong Wang,Weixiong Zhang
#t2007
#cPLoS Computational Biology
#index3371776
#% 
#!
  
#*Accelerated Profile HMM Searches.
#@Sean R. Eddy
#t2011
#cPLoS Computational Biology
#index3371826
#% 
#!
  
#*Quantitative Analyses of Circadian Gene Expression in Mammalian Cell Cultures.
#@Mariko Izumo,Takashi R. Sato,Martin Straume,Carl Hirschie Johnson
#t2006
#cPLoS Computational Biology
#index3371524
#% 
#!
  
#*Effects of Ploidy and Recombination on Evolution of Robustness in a Model of the Segment Polarity Network.
#@Kerry J. Kim,Vilaiwan M. Fernandes
#t2009
#cPLoS Computational Biology
#index3371441
#% 
#!
  
#*The RNA Silencing Pathway: The Bits and Pieces That Matter.
#@Marian Groenenboom,Athanasius F. M. Marée,Paulien Hogeweg
#t2005
#cPLoS Computational Biology
#index3371329
#% 
#!
  
#*Hierarchical Modeling of Activation Mechanisms in the ABL and EGFR Kinase Domains: Thermodynamic and Mechanistic Catalysts of Kinase Activation by Cancer Mutations.
#@Anshuman Dixit,Gennady Verkhivker
#t2009
#cPLoS Computational Biology
#index3371434
#% 
#!
  
#*Ten Simple Rules To Combine Teaching and Research.
#@Quentin Vicens,Philip E. Bourne
#t2009
#cPLoS Computational Biology
#index3371299
#% 
#!
  
#*Geometric Interpretation of Gene Coexpression Network Analysis.
#@Steve Horvath,Jun Dong
#t2008
#cPLoS Computational Biology
#index3371447
#% 
#!
  
#*A Common Cortical Circuit Mechanism for Perceptual Categorical Discrimination and Veridical Judgment.
#@Feng Liu,Xiao-Jing Wang
#t2008
#cPLoS Computational Biology
#index3371580
#% 
#!
  
#*Dynamic Simulations on the Arachidonic Acid Metabolic Network.
#@Kun Yang,Wenzhe Ma,Huanhuan Liang,Qi Ouyang,Chao Tang,Luhua Lai
#t2007
#cPLoS Computational Biology
#index3371226
#% 
#!
  
#*Classifying RNA-Binding Proteins Based on Electrostatic Properties.
#@Shula Shazman,Yael Mandel-Gutfreund
#t2008
#cPLoS Computational Biology
#index3371345
#% 
#!
  
#*Chemotaxis in : A Molecular Model for Robust Precise Adaptation.
#@Clinton H. Hansen,Robert G. Endres,Ned S. Wingreen
#t2008
#cPLoS Computational Biology
#index3371483
#% 
#!
  
#*The Dynamics of T-Cell Receptor Repertoire Diversity Following Thymus Transplantation for DiGeorge Anomaly.
#@Stanca M. Ciupe,Blythe H. Devlin,M. Louise Markert,Thomas B. Kepler
#t2009
#cPLoS Computational Biology
#index3371784
#% 
#!
  
#*VASP: A Volumetric Analysis of Surface Properties Yields Insights into Protein-Ligand Binding Specificity.
#@Brian Y. Chen,Barry Honig
#t2010
#cPLoS Computational Biology
#index3371289
#% 
#!
  
#*Agent-Based Model of Therapeutic Adipose-Derived Stromal Cell Trafficking during Ischemia Predicts Ability To Roll on P-Selectin.
#@Alexander M. Bailey,Michael B. Lawrence,Hulan Shang,Adam J. Katz,Shayn M. Peirce
#t2009
#cPLoS Computational Biology
#index3371364
#% 
#!
  
#*From Bad to Good: Fitness Reversals and the Ascent of Deleterious Mutations.
#@Matthew C. Cowperthwaite,J. J. Bull,Lauren Ancel Meyers
#t2006
#cPLoS Computational Biology
#index3371650
#% 
#!
  
#*Dynamics of Trimming the Content of Face Representations for Categorization in the Brain.
#@Nicola J. van Rijsbergen,Philippe G. Schyns
#t2009
#cPLoS Computational Biology
#index3371392
#% 
#!
  
#*Will a Biological Database Be Different from a Biological Journal?
#@Philip E. Bourne
#t2005
#cPLoS Computational Biology
#index3371643
#% 
#!
  
#*Game Theory of Mind.
#@Wako Yoshida,Raymond J. Dolan,Karl J. Friston
#t2008
#cPLoS Computational Biology
#index3371743
#% 
#!
  
#*Activated Membrane Patches Guide Chemotactic Cell Motility.
#@Inbal Hecht,Monica L. Skoge,Pascale G. Charest,Eshel Ben-Jacob,Richard A. Firtel,William F. Loomis,Herbert Levine,Wouter-Jan Rappel
#t2011
#cPLoS Computational Biology
#index3371439
#% 
#!
  
#*Computation of Conformational Coupling in Allosteric Proteins.
#@Brian A. Kidd,David Baker,Wendy E. Thomas
#t2009
#cPLoS Computational Biology
#index3371548
#% 
#!
  
#*Effect of Promoter Architecture on the Cell-to-Cell Variability in Gene Expression.
#@Alvaro Sanchez,Hernan G. Garcia,Daniel Jones,Rob Phillips,Jané Kondev
#t2011
#cPLoS Computational Biology
#index3371636
#% 
#!
  
#*A Self-Organizing Algorithm for Modeling Protein Loops.
#@Pu Liu,Fangqiang Zhu,Dmitrii N. Rassokhin,Dimitris K. Agrafiotis
#t2009
#cPLoS Computational Biology
#index3371721
#% 
#!
  
#*Understanding Pitch Perception as a Hierarchical Process with Top-Down Modulation.
#@Emili Balaguer-Ballester,Nicholas R. Clark,Martin Coath,Katrin Krumbholz,Susan L. Denham
#t2009
#cPLoS Computational Biology
#index3371438
#% 
#!
  
#*Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads.
#@Steven L. Salzberg,Daniel D. Sommer,Daniela Puiu,Vincent T. Lee
#t2008
#cPLoS Computational Biology
#index3371512
#% 
#!
  
#*Small RNAs Originated from Pseudogenes: - or -Acting?
#@Xingyi Guo,Zhaolei Zhang,Mark B. Gerstein,Deyou Zheng
#t2009
#cPLoS Computational Biology
#index3371264
#% 
#!
  
#*Alignment and Prediction of -Regulatory Modules Based on a Probabilistic Model of Evolution.
#@Xin He,Xu Ling,Saurabh Sinha
#t2009
#cPLoS Computational Biology
#index3371529
#% 
#!
  
#*Differential Producibility Analysis (DPA) of Transcriptomic Data with Metabolic Networks: Deconstructing the Metabolic Response of .
#@Bhushan K. Bonde,Dany J. V. Beste,Emma Laing,Andrzej M. Kierzek,Johnjoe McFadden
#t2011
#cPLoS Computational Biology
#index3371728
#% 
#!
  
#*Bioinformatics Education - Perspectives and Challenges.
#@Shoba Ranganathan
#t2005
#cPLoS Computational Biology
#index3371538
#% 
#!
  
#*Fold Designability, Distribution, and Disease.
#@Philip Wong,Dmitrij Frishman
#t2006
#cPLoS Computational Biology
#index3371539
#% 
#!
  
#*Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System.
#@Hiroyuki Kurata,Hana El-Samad,Rei Iwasaki,Hisao Ohtake,John C. Doyle,Irina Grigorova,Carol A. Gross,Mustafa Khammash
#t2006
#cPLoS Computational Biology
#index3371421
#% 
#!
  
#*Network Clustering Revealed the Systemic Alterations of Mitochondrial Protein Expression.
#@Jouhyun Jeon,Jae Hoon Jeong,Je-Hyun Baek,Hyun-Jung Koo,Wook-Ha Park,Jae-Seong Yang,Myeong-Hee Yu,Sanguk Kim,Youngmi Kim Pak
#t2011
#cPLoS Computational Biology
#index3371336
#% 
#!
  
#*Bridging the Resolution Gap in Structural Modeling of 3D Genome Organization.
#@Marc A. Martí-Renom,Leonid A. Mirny
#t2011
#cPLoS Computational Biology
#index3371566
#% 
#!
  
#*Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, and , with Their Insect Host, .
#@Ludovic Cottret,Paulo Vieira Milreu,Vicente Acuña,Alberto Marchetti-Spaccamela,Leen Stougie,Hubert Charles,Marie-France Sagot
#t2010
#cPLoS Computational Biology
#index3371616
#% 
#!
  
#*How Landscape Heterogeneity Frames Optimal Diffusivity in Searching Processes.
#@E. P. Raposo,F. Bartumeus,M. G. E. da Luz,P. J. Ribeiro-Neto,T. A. Souza,G. M. Viswanathan
#t2011
#cPLoS Computational Biology
#index3371756
#% 
#!
  
#*Spike Correlations in a Songbird Agree with a Simple Markov Population Model.
#@Andrea P. Weber,Richard H. R. Hahnloser
#t2007
#cPLoS Computational Biology
#index3371503
#% 
#!
  
#*Reconstructing the Three-Dimensional GABAergic Microcircuit of the Striatum.
#@Mark D. Humphries,Ric Wood,Kevin N. Gurney
#t2010
#cPLoS Computational Biology
#index3371587
#% 
#!
  
#*Mechanisms of Firing Patterns in Fast-Spiking Cortical Interneurons.
#@David Golomb,Karnit Donner,Liron Shacham,Dan Shlosberg,Yael Amitai,David Hansel
#t2007
#cPLoS Computational Biology
#index3371281
#% 
#!
  
#*Thermodynamic Selection of Steric Zipper Patterns in the Amyloid Cross- Spine.
#@Jiyong Park,Byungnam Kahng,Wonmuk Hwang
#t2009
#cPLoS Computational Biology
#index3371448
#% 
#!
  
#*Directed Mammalian Gene Regulatory Networks Using Expression and Comparative Genomic Hybridization Microarray Data from Radiation Hybrids.
#@Sangtae Ahn,Richard T. Wang,Christopher C. Park,Andy Lin,Richard M. Leahy,Kenneth Lange,Desmond J. Smith
#t2009
#cPLoS Computational Biology
#index3371255
#% 
#!
  
#*Analyzing the Functional Properties of the Creatine Kinase System with Multiscale 'Sloppy' Modeling.
#@Hannes Hettling,Johannes H. G. M. van Beek
#t2011
#cPLoS Computational Biology
#index3371254
#% 
#!
  
#*Computational Analysis of Mouse piRNA Sequence and Biogenesis.
#@Doron Betel,Robert P. Sheridan,Debora S. Marks,Chris Sander
#t2007
#cPLoS Computational Biology
#index3371692
#% 
#!
  
#*Network-State Modulation of Power-Law Frequency-Scaling in Visual Cortical Neurons.
#@Sami El Boustani,Olivier Marre,Sébastien Béhuret,Pierre Baudot,Pierre Yger,Thierry Bal,Alain Destexhe,Yves Frégnac
#t2009
#cPLoS Computational Biology
#index3371609
#% 
#!
  
#*Timing the Emergence of Resistance to Anti-HIV Drugs with Large Genetic Barriers.
#@Pankhuri Arora,Narendra M. Dixit
#t2009
#cPLoS Computational Biology
#index3371713
#% 
#!
  
#*Genome-Scale Reconstruction and Analysis of the a KT2440 Metabolic Network Facilitates Applications in Biotechnology.
#@Jacek Puchalka,Matthew A. Oberhardt,Miguel Godinho,Agata Bielecka,Daniela Regenhardt,Kenneth N. Timmis,Jason A. Papin,Vítor A. P. Martins dos Santos
#t2008
#cPLoS Computational Biology
#index3371521
#% 
#!
  
#*Landscape as a Model: The Importance of Geometry.
#@E. Penelope Holland,James N. Aegerter,Calvin Dytham,Graham C. Smith
#t2007
#cPLoS Computational Biology
#index3371559
#% 
#!
  
#*A Quick Guide to Teaching R Programming to Computational Biology Students.
#@Stephen J. Eglen
#t2009
#cPLoS Computational Biology
#index3371245
#% 
#!
  
#*Functional Coverage of the Human Genome by Existing Structures, Structural Genomics Targets, and Homology Models.
#@Lei Xie,Philip E. Bourne
#t2005
#cPLoS Computational Biology
#index3371318
#% 
#!
  
#*deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data.
#@Andrew McPherson,Fereydoun Hormozdiari,Abdalnasser Zayed,Ryan Giuliany,Gavin Ha,Mark G. F. Sun,Malachi Griffith,Alireza Heravi Moussavi,Janine Senz,Nataliya Melnyk,Marina Pacheco,Marco A. Marra,Martin Hirst,Torsten O. Nielsen,Süleyman Cenk Sahinalp,David G. Huntsman,Sohrab P. Shah
#t2011
#cPLoS Computational Biology
#index3371813
#% 
#!
  
#*Optimal Stimulus Shapes for Neuronal Excitation.
#@Daniel B. Forger,David Paydarfar,John R. Clay
#t2011
#cPLoS Computational Biology
#index3371658
#% 
#!
  
#*Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction.
#@Aalt D. J. van Dijk,Giuseppa Morabito,Martijn Fiers,Roeland C. H. J. van Ham,Gerco C. Angenent,Richard G. H. Immink
#t2010
#cPLoS Computational Biology
#index3371419
#% 
#!
  
#*Theoretical Analysis of Competing Conformational Transitions in Superhelical DNA.
#@Dina Zhabinskaya,Craig J. Benham
#t2012
#cPLoS Computational Biology
#index3371699
#% 
#!
  
#*DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies.
#@Shaun Mahony,Philip E. Auron,Panayiotis V. Benos
#t2007
#cPLoS Computational Biology
#index3371234
#% 
#!
  
#*A Phylogenomic Study of Human, Dog, and Mouse.
#@Gina Cannarozzi,Adrian Schneider,Gaston H. Gonnet
#t2007
#cPLoS Computational Biology
#index3371297
#% 
#!
  
#*The Dynamics of Supply and Demand in mRNA Translation.
#@Chris A. Brackley,M. Carmen Romano,Marco Thiel
#t2011
#cPLoS Computational Biology
#index3371428
#% 
#!
  
#*A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach.
#@Peng Wang,John Sidney,Courtney Dow,Bianca Mothé,Alessandro Sette,Björn Peters
#t2008
#cPLoS Computational Biology
#index3371354
#% 
#!
  
#*Ten Simple Rules for a Successful Collaboration.
#@Quentin Vicens,Philip E. Bourne
#t2007
#cPLoS Computational Biology
#index3371418
#% 
#!
  
#*Stem Cell Proliferation and Quiescence - Two Sides of the Same Coin.
#@Ingmar Glauche,Kateri Moore,Lars Thielecke,Katrin Horn,Markus Loeffler,Ingo Roeder
#t2009
#cPLoS Computational Biology
#index3371714
#% 
#!
  
#*An Integrated Disease/Pharmacokinetic/Pharmacodynamic Model Suggests Improved Interleukin-21 Regimens Validated Prospectively for Mouse Solid Cancers.
#@Moran Elishmereni,Yuri Kheifetz,Henrik Søndergaard,Rune Viig Overgaard,Zvia Agur
#t2011
#cPLoS Computational Biology
#index3371409
#% 
#!
  
#*Cerebellar Motor Learning: When Is Cortical Plasticity Not Enough?
#@John Porrill,Paul Dean
#t2007
#cPLoS Computational Biology
#index3371290
#% 
#!
  
#*Humans Can Adopt Optimal Discounting Strategy under Real-Time Constraints.
#@Nicolas Schweighofer,K. Shishida,Cheol E. Han,Yasumasa Okamoto,Saori C. Tanaka,Shigeto Yamawaki,Kenji Doya
#t2006
#cPLoS Computational Biology
#index3371484
#% 
#!
  
#*Design Principles for Ligand-Sensing, Conformation-Switching Ribozymes.
#@Xi Chen,Andrew D. Ellington
#t2009
#cPLoS Computational Biology
#index3371346
#% 
#!
  
#*A Quantitative Study of the Division Cycle of Stalked Cells.
#@Shenghua Li,Paul Brazhnik,Bruno W. S. Sobral,John J. Tyson
#t2008
#cPLoS Computational Biology
#index3371668
#% 
#!
  
#*An Automated Phenotype-Driven Approach (Force) for Refining Metabolic and Regulatory Models.
#@Dipak Barua,Joonhoon Kim,Jennifer L. Reed
#t2010
#cPLoS Computational Biology
#index3371659
#% 
#!
  
#*Decomposition of Gene Expression State Space Trajectories.
#@Jessica C. Mar,John Quackenbush
#t2009
#cPLoS Computational Biology
#index3371355
#% 
#!
  
#*A Stochastic View of Spliceosome Assembly and Recycling in the Nucleus.
#@José Rino,Teresa Carvalho,José Braga,Joana M. P. Desterro,Reinhard Lührmann,Maria Carmo-Fonseca
#t2007
#cPLoS Computational Biology
#index3371665
#% 
#!
  
#*Correlated Mutations: A Hallmark of Phenotypic Amino Acid Substitutions.
#@Andreas Kowarsch,Angelika Fuchs,Dmitrij Frishman,Philipp Pagel
#t2010
#cPLoS Computational Biology
#index3371300
#% 
#!
  
#*Predicting Functional Gene Links from Phylogenetic-Statistical Analyses of Whole Genomes.
#@Daniel Barker,Mark Pagel
#t2005
#cPLoS Computational Biology
#index3371319
#% 
#!
  
#*Discovering Regulatory RNAs in Genomes by Support Vector Machines.
#@Xing Xu,Yongmei Ji,Gary D. Stormo
#t2009
#cPLoS Computational Biology
#index3371262
#% 
#!
  
#*Multistable Decision Switches for Flexible Control of Epigenetic Differentiation.
#@Raúl Guantes,Juan F. Poyatos
#t2008
#cPLoS Computational Biology
#index3371736
#% 
#!
  
#*Synaptic Plasticity Controls Sensory Responses through Frequency-Dependent Gamma Oscillation Resonance.
#@Se-Bum Paik,Donald A. Glaser
#t2010
#cPLoS Computational Biology
#index3371400
#% 
#!
  
#*Dynamics and Potential Impact of the Immune Response to Chronic Myelogenous Leukemia.
#@Peter S. Kim,Peter P. Lee,Doron Levy
#t2008
#cPLoS Computational Biology
#index3371280
#% 
#!
  
#*A Curvature-Mediated Mechanism for Localization of Lipids to Bacterial Poles.
#@Kerwyn Casey Huang,Ranjan Mukhopadhyay,Ned S. Wingreen
#t2006
#cPLoS Computational Biology
#index3371785
#% 
#!
  
#*The Dynamic Brain: From Spiking Neurons to Neural Masses and Cortical Fields.
#@Gustavo Deco,Viktor K. Jirsa,Peter A. Robinson,Michael Breakspear,Karl J. Friston
#t2008
#cPLoS Computational Biology
#index3371557
#% 
#!
  
#*Robust Signal Processing in Living Cells.
#@Ralf Steuer,Steffen Waldherr,Victor Sourjik,Markus Kollmann
#t2011
#cPLoS Computational Biology
#index3371790
#% 
#!
  
#*Genome-Wide Survey for Biologically Functional Pseudogenes.
#@Örjan Svensson,Lars Arvestad,Jens Lagergren
#t2006
#cPLoS Computational Biology
#index3371763
#% 
#!
  
#*Correction: The Role of Compensatory Mutations in the Emergence of Drug Resistance.
#@Andreas Handel,Roland R. Regoes,Rustom Antia
#t2007
#cPLoS Computational Biology
#index3371573
#% 
#!
  
#*The ISCB: Growing and Evolving in Step with Science.
#@Michael Gribskov
#t2005
#cPLoS Computational Biology
#index3371778
#% 
#!
  
#*How Haptic Size Sensations Improve Distance Perception.
#@Peter W. Battaglia,Daniel Kersten,Paul R. Schrater
#t2011
#cPLoS Computational Biology
#index3371799
#% 
#!
  
#*Correction: Folding Very Short Peptides Using Molecular Dynamics.
#@Bosco K. Ho,Ken A. Dill
#t2006
#cPLoS Computational Biology
#index3371594
#% 
#!
  
#*Functional States of the Genome-Scale Transcriptional Regulatory System.
#@Erwin P. Gianchandani,Andrew R. Joyce,Bernhard O. Palsson,Jason A. Papin
#t2009
#cPLoS Computational Biology
#index3371465
#% 
#!
  
#*Influence of the Fibroblastic Reticular Network on Cell-Cell Interactions in Lymphoid Organs.
#@Frederik Graw,Roland R. Regoes
#t2012
#cPLoS Computational Biology
#index3371602
#% 
#!
  
#*Investigating Homology between Proteins using Energetic Profiles.
#@James O. Wrabl,Vincent J. Hilser
#t2010
#cPLoS Computational Biology
#index3371814
#% 
#!
  
#*The Rat Genome Database Curators: Who, What, Where, Why.
#@Mary Shimoyama,G. Thomas Hayman,Stanley Laulederkind,Rajni Nigam,Timothy Lowry,Victoria Petri,Jennifer R. Smith,Shur-Jen Wang,Diane H. Munzenmaier,Melinda R. Dwinell,Simon N. Twigger,Howard J. Jacob
#t2009
#cPLoS Computational Biology
#index3371493
#% 
#!
  
#*A Learning Theory for Reward-Modulated Spike-Timing-Dependent Plasticity with Application to Biofeedback.
#@Robert A. Legenstein,Dejan Pecevski,Wolfgang Maass
#t2008
#cPLoS Computational Biology
#index3371225
#% 
#!
  
#*Embedding mRNA Stability in Correlation Analysis of Time-Series Gene Expression Data.
#@Lorenzo Farina,Alberto De Santis,Samanta Salvucci,Giorgio Morelli,Ida Ruberti
#t2008
#cPLoS Computational Biology
#index3371224
#% 
#!
  
#*Dynamics and Mechanical Stability of the Developing Dorsoventral Organizer of the Wing Imaginal Disc.
#@Oriol Canela-Xandri,Francesc Sagués,Jaume Casademunt,Javier Buceta
#t2011
#cPLoS Computational Biology
#index3371328
#% 
#!
  
#*A Model for the Origin and Properties of Flicker-Induced Geometric Phosphenes.
#@Michael Rule,Matthew Stoffregen,Bard Ermentrout
#t2011
#cPLoS Computational Biology
#index3371457
#% 
#!
  
#*Qualia: The Geometry of Integrated Information.
#@David Balduzzi,Giulio Tononi
#t2009
#cPLoS Computational Biology
#index3371309
#% 
#!
  
#*Exonization Events Reveal Features Required for Precise Recognition of Exons by the Splicing Machinery.
#@Schraga Schwartz,Nurit Gal-Mark,Nir Kfir,Ram Oren,Eddo Kim,Gil Ast
#t2009
#cPLoS Computational Biology
#index3371375
#% 
#!
  
#*Not All Scale-Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Evolution.
#@Fereydoun Hormozdiari,Petra Berenbrink,Natasa Przulj,Süleyman Cenk Sahinalp
#t2007
#cPLoS Computational Biology
#index3371283
#% 
#!
  
#*Defining an Essence of Structure Determining Residue Contacts in Proteins.
#@Rajagopal Sathyapriya,Jose M. Duarte,Henning Stehr,Ioannis Filippis,Michael Lappe
#t2009
#cPLoS Computational Biology
#index3371735
#% 
#!
  
#*Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions.
#@Dirk Helbing,Attila Szolnoki,Matjaz Perc,György Szabó
#t2010
#cPLoS Computational Biology
#index3371755
#% 
#!
  
#*A New Perceptual Bias Reveals Suboptimal Population Decoding of Sensory Responses.
#@Tom Putzeys,Matthias Bethge,Felix Wichmann,Johan Wagemans,Robbe Goris
#t2012
#cPLoS Computational Biology
#index3371247
#% 
#!
  
#*Drug Discovery Using Chemical Systems Biology: Weak Inhibition of Multiple Kinases May Contribute to the Anti-Cancer Effect of Nelfinavir.
#@Li Xie,Thomas Evangelidis,Lei Xie,Philip E. Bourne
#t2011
#cPLoS Computational Biology
#index3371475
#% 
#!
  
#*Computational Biology in Cuba: An Opportunity to Promote Science in a Developing Country.
#@Tirso Pons,Luis A. Montero,Juan P. Febles
#t2007
#cPLoS Computational Biology
#index3371686
#% 
#!
  
#*Quantitative Analysis of Cell Nucleus Organisation.
#@Carol Shiels,Niall M. Adams,Suhail A. Islam,David A. Stephens,Paul S. Freemont
#t2007
#cPLoS Computational Biology
#index3371273
#% 
#!
  
#*Evolutionary and Physiological Importance of Hub Proteins.
#@Nizar N. Batada,Laurence D. Hurst,Mike Tyers
#t2006
#cPLoS Computational Biology
#index3371401
#% 
#!
  
#*Regulation of Signal Duration and the Statistical Dynamics of Kinase Activation by Scaffold Proteins.
#@Jason W. Locasale,Arup K. Chakraborty
#t2008
#cPLoS Computational Biology
#index3371744
#% 
#!
  
#*One Rule to Grow Them All: A General Theory of Neuronal Branching and Its Practical Application.
#@Hermann Cuntz,Friedrich Forstner,Alexander Borst,Michael Häusser
#t2010
#cPLoS Computational Biology
#index3371363
#% 
#!
  
#*Robustness in Glyoxylate Bypass Regulation.
#@Guy Shinar,Joshua D. Rabinowitz,Uri Alon
#t2009
#cPLoS Computational Biology
#index3371530
#% 
#!
  
#*Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study.
#@Elijah Roberts,Andrew T. Magis,Julio O. Ortiz,Wolfgang Baumeister,Zaida Luthey-Schulten
#t2011
#cPLoS Computational Biology
#index3371651
#% 
#!
  
#*Getting Started in Computational Mass Spectrometry-Based Proteomics.
#@Olga Vitek
#t2009
#cPLoS Computational Biology
#index3371244
#% 
#!
  
#*"Fluctuograms" Reveal the Intermittent Intra-Protein Communication in Subtilisin Carlsberg and Correlate Mechanical Coupling with Co-Evolution.
#@Jordi Silvestre-Ryan,Yuchun Lin,Jhih-Wei Chu
#t2011
#cPLoS Computational Biology
#index3371707
#% 
#!
  
#*Occurrence and Treatment of Bone Atrophic Non-Unions Investigated by an Integrative Approach.
#@Liesbet Geris,Anita A. C. Reed,Jos Vander Sloten,A. Hamish R. W. Simpson,Hans Van Oosterwyck
#t2010
#cPLoS Computational Biology
#index3371265
#% 
#!
  
#*Bistability in Apoptosis by Receptor Clustering.
#@Kenneth L. Ho,Heather A. Harrington
#t2010
#cPLoS Computational Biology
#index3371474
#% 
#!
  
#*Modeling Somatic Evolution in Tumorigenesis.
#@Sabrina L. Spencer,Ryan A. Gerety,Kenneth J. Pienta,Stephanie Forrest
#t2006
#cPLoS Computational Biology
#index3371384
#% 
#!
  
#*A Mass Conserved Reaction-Diffusion System Captures Properties of Cell Polarity.
#@Mikiya Otsuji,Shuji Ishihara,Carl Co,Kozo Kaibuchi,Atsushi Mochizuki,Shinya Kuroda
#t2007
#cPLoS Computational Biology
#index3371429
#% 
#!
  
#*Emergence of Protein Fold Families through Rational Design.
#@Feng Ding,Nikolay V. Dokholyan
#t2006
#cPLoS Computational Biology
#index3371754
#% 
#!
  
#*A Low Dimensional Description of Globally Coupled Heterogeneous Neural Networks of Excitatory and Inhibitory Neurons.
#@Roxana A. Stefanescu,Viktor K. Jirsa
#t2008
#cPLoS Computational Biology
#index3371356
#% 
#!
  
#*Estimating Costs and Benefits of CTL Escape Mutations in SIV/HIV Infection.
#@Vitaly V. Ganusov,Rob J. De Boer
#t2006
#cPLoS Computational Biology
#index3371393
#% 
#!
  
#*Neural Dynamics as Sampling: A Model for Stochastic Computation in Recurrent Networks of Spiking Neurons.
#@Lars Buesing,Johannes Bill,Bernhard Nessler,Wolfgang Maass
#t2011
#cPLoS Computational Biology
#index3371327
#% 
#!
  
#*A Combined Experimental and Mathematical Approach for Molecular-based Optimization of Irinotecan Circadian Delivery.
#@Annabelle Ballesta,Sandrine Dulong,Chadi Abbara,Boris Cohen,Alper Okyar,Jean Clairambault,Francis Levi
#t2011
#cPLoS Computational Biology
#index3371374
#% 
#!
  
#*Cellularly-Driven Differences in Network Synchronization Propensity Are Differentially Modulated by Firing Frequency.
#@Christian G. Fink,Victoria Booth,Michal Zochowski
#t2011
#cPLoS Computational Biology
#index3371547
#% 
#!
  
#*SAGE2Splice: Unmapped SAGE Tags Reveal Novel Splice Junctions.
#@Byron Yu-Lin Kuo,Ying Chen,Slavita Bohacec,Öjvind Johansson,Wyeth W. Wasserman,Elizabeth M. Simpson
#t2006
#cPLoS Computational Biology
#index3371820
#% 
#!
  
#*Stereochemical Criteria for Prediction of the Effects of Proline Mutations on Protein Stability.
#@Kanika Bajaj,Mallur S. Madhusudhan,Bharat V. Adkar,Purbani Chakrabarti,C. Ramakrishnan,Andrej Sali,Raghavan Varadarajan
#t2007
#cPLoS Computational Biology
#index3371819
#% 
#!
  
#*Genes and (Common) Pathways Underlying Drug Addiction.
#@Chuan-Yun Li,Xizeng Mao,Liping Wei
#t2008
#cPLoS Computational Biology
#index3371411
#% 
#!
  
#*How Informative Are Spatial CA3 Representations Established by the Dentate Gyrus?
#@Erika Cerasti,Alessandro Treves
#t2010
#cPLoS Computational Biology
#index3371677
#% 
#!
  
#*Astrocytic Mechanisms Explaining Neural-Activity-Induced Shrinkage of Extraneuronal Space.
#@Ivar Østby,Leiv Øyehaug,Gaute T. Einevoll,Erlend A. Nagelhus,Erik Plahte,Thomas Zeuthen,Catherine M. Lloyd,Ole P. Ottersen,Stig W. Omholt
#t2009
#cPLoS Computational Biology
#index3371777
#% 
#!
  
#*A Comparison of Mathematical Models for Polarization of Single Eukaryotic Cells in Response to Guided Cues.
#@Alexandra Jilkine,Leah Edelstein-Keshet
#t2011
#cPLoS Computational Biology
#index3371495
#% 
#!
  
#*Matt: Local Flexibility Aids Protein Multiple Structure Alignment.
#@Matthew Menke,Bonnie Berger,Lenore Cowen
#t2008
#cPLoS Computational Biology
#index3371292
#% 
#!
  
#*Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al.
#@David C. Nickle,Nebojsa Jojic,David Heckerman,Vladimir Jojic,Darko Kirovski,Morgane Rolland,Sergei L. Kosakovsky Pond,James I. Mullins
#t2008
#cPLoS Computational Biology
#index3371335
#% 
#!
  
#*Neuraminidase Inhibitor Resistance in Influenza: Assessing the Danger of Its Generation and Spread.
#@Andreas Handel,Ira M. Longini Jr.,Rustom Antia
#t2007
#cPLoS Computational Biology
#index3371353
#% 
#!
  
#*Molecular Mechanism of Cyclodextrin Mediated Cholesterol Extraction.
#@Cesar A. López,Alex H. de Vries,Siewert J. Marrink
#t2011
#cPLoS Computational Biology
#index3371511
#% 
#!
  
#*A New View of the Bacterial Cytosol Environment.
#@Benjamin P. Cossins,Matthew P. Jacobson,Victor Guallar
#t2011
#cPLoS Computational Biology
#index3371446
#% 
#!
  
#*Dynamic Conformational Changes in MUNC18 Prevent Syntaxin Binding.
#@Dana Bar-On,Esther Nachliel,Menachem Gutman,Uri Ashery
#t2011
#cPLoS Computational Biology
#index3371622
#% 
#!
  
#*Partial Order Optimum Likelihood (POOL): Maximum Likelihood Prediction of Protein Active Site Residues Using 3D Structure and Sequence Properties.
#@Wenxu Tong,Ying Wei,Leonel F. Murga,Mary Jo Ondrechen,Ronald J. Williams
#t2009
#cPLoS Computational Biology
#index3371317
#% 
#!
  
#*Defining the Plasticity of Transcription Factor Binding Sites by Deconstructing DNA Consensus Sequences: The PhoP-Binding Sites among Gamma/Enterobacteria.
#@Oscar Harari,Sun-Yang Park,Henry Huang,Eduardo A. Groisman,Igor Zwir
#t2010
#cPLoS Computational Biology
#index3371733
#% 
#!
  
#*Frequency-Dependent Selection Predicts Patterns of Radiations and Biodiversity.
#@Carlos J. Melián,David Alonso,Diego P. Vázquez,James Regetz,Stefano Allesina
#t2010
#cPLoS Computational Biology
#index3371724
#% 
#!
  
#*Measuring the Evolutionary Rewiring of Biological Networks.
#@Chong Shou,Nitin Bhardwaj,Hugo Y. K. Lam,Koon-Kiu Yan,Philip M. Kim,Michael Snyder,Mark B. Gerstein
#t2011
#cPLoS Computational Biology
#index3371706
#% 
#!
  
#*Analysis of Gene Regulatory Networks in the Mammalian Circadian Rhythm.
#@Jun Yan,Haifang Wang,Yuting Liu,Chunxuan Shao
#t2008
#cPLoS Computational Biology
#index3371227
#% 
#!
  
#*Mutual Inactivation of Notch Receptors and Ligands Facilitates Developmental Patterning.
#@David Sprinzak,Amit Lakhanpal,Lauren LeBon,Jordi García-Ojalvo,Michael B. Elowitz
#t2011
#cPLoS Computational Biology
#index3371537
#% 
#!
  
#*Dynamic Allostery in the Methionine Repressor Revealed by Force Distribution Analysis.
#@Wolfram Stacklies,Fei Xia,Frauke Gräter
#t2009
#cPLoS Computational Biology
#index3371361
#% 
#!
  
#*Formation and Growth of Oligomers: A Monte Carlo Study of an Amyloid Tau Fragment.
#@Da-Wei Li,Sandipan Mohanty,Anders Irbäck,Shuanghong Huo
#t2008
#cPLoS Computational Biology
#index3371456
#% 
#!
  
#*Efficacy of Synaptic Inhibition Depends on Multiple, Dynamically Interacting Mechanisms Implicated in Chloride Homeostasis.
#@Nicolas Doyon,Steven A. Prescott,Annie Castonguay,Antoine G. Godin,Helmut Kröger,Yves De Koninck
#t2011
#cPLoS Computational Biology
#index3371243
#% 
#!
  
#*Conductance Ratios and Cellular Identity.
#@Amber E. Hudson,Astrid A. Prinz
#t2010
#cPLoS Computational Biology
#index3371408
#% 
#!
  
#*Novel Algorithms Reveal Streptococcal Transcriptomes and Clues about Undefined Genes.
#@Patricia A. Ryan,Brian W. Kirk,Chad W. Euler,Raymond Schuch,Vincent A. Fischetti
#t2007
#cPLoS Computational Biology
#index3371436
#% 
#!
  
#*Microarray Comparative Genomic Hybridisation Analysis Incorporating Genomic Organisation, and Application to Enterobacterial Plant Pathogens.
#@Leighton Pritchard,Hui Liu,Clare Booth,Emma Douglas,Patrice François,Jacques Schrenzel,Peter E. Hedley,Paul R. J. Birch,Ian K. Toth
#t2009
#cPLoS Computational Biology
#index3371604
#% 
#!
  
#*Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle.
#@Jin Wang,Bo Huang,Xuefeng Xia,Zhirong Sun
#t2006
#cPLoS Computational Biology
#index3371697
#% 
#!
  
#*Brief Overview of Bioinformatics Activities in Singapore.
#@Frank Eisenhaber,Chee-Keong Kwoh,See-Kiong Ng,Wing-Kin Sung,Limsoon Wong
#t2009
#cPLoS Computational Biology
#index3371586
#% 
#!
  
#*An Information-Theoretic Characterization of the Optimal Gradient Sensing Response of Cells.
#@Burton W. Andrews,Pablo A. Iglesias
#t2007
#cPLoS Computational Biology
#index3371223
#% 
#!
  
#*Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure.
#@John A. Capra,Roman A. Laskowski,Janet M. Thornton,Mona Singh,Thomas A. Funkhouser
#t2009
#cPLoS Computational Biology
#index3371426
#% 
#!
  
#*Cholera- and Anthrax-Like Toxins Are among Several New ADP-Ribosyltransferases.
#@Robert J. Fieldhouse,Zachari Turgeon,Dawn White,A. Rod Merrill
#t2010
#cPLoS Computational Biology
#index3371342
#% 
#!
  
#*Efficient Network Reconstruction from Dynamical Cascades Identifies Small-World Topology of Neuronal Avalanches.
#@Sinisa Pajevic,Dietmar Plenz
#t2009
#cPLoS Computational Biology
#index3371623
#% 
#!
  
#*A Model for Integrating Elementary Neural Functions into Delayed-Response Behavior.
#@Thomas Gisiger,Michel Kerszberg
#t2006
#cPLoS Computational Biology
#index3371593
#% 
#!
  
#*LsrR Quorum Sensing "Switch" Is Revealed by a Bottom-Up Approach.
#@Sara Hooshangi,William E. Bentley
#t2011
#cPLoS Computational Biology
#index3371641
#% 
#!
  
#*Targeted Molecular Dynamics Study of C-Loop Closure and Channel Gating in Nicotinic Receptors.
#@Xiaolin Cheng,Hai-Long Wang,Barry J. Grant,Steven M. Sine,James Andrew McCammon
#t2006
#cPLoS Computational Biology
#index3371716
#% 
#!
  
#*Comparative Analyses of Fundamental Differences in Membrane Transport Capabilities in Prokaryotes and Eukaryotes.
#@Qinghu Ren,Ian T. Paulsen
#t2005
#cPLoS Computational Biology
#index3371800
#% 
#!
  
#*Extracting Message Inter-Departure Time Distributions from the Human Electroencephalogram.
#@Bratislav Misic,Vasily A. Vakorin,Natasa Kovacevic,Tomás Paus,Anthony Randal McIntosh
#t2011
#cPLoS Computational Biology
#index3371801
#% 
#!
  
#*3D Complex: A Structural Classification of Protein Complexes.
#@Emmanuel D. Levy,José B. Pereira-Leal,Cyrus Chothia,Sarah A. Teichmann
#t2006
#cPLoS Computational Biology
#index3371791
#% 
#!
  
#*Characterization of Growth and Metabolism of the Haloalkaliphile .
#@Orland R. Gonzalez,Tanja Oberwinkler,Locedie Mansueto,Friedhelm Pfeiffer,Eduardo Mendoza,Ralf Zimmer,Dieter Oesterhelt
#t2010
#cPLoS Computational Biology
#index3371688
#% 
#!
  
#*A Generic Mechanism for Adaptive Growth Rate Regulation.
#@Chikara Furusawa,Kunihiko Kaneko
#t2008
#cPLoS Computational Biology
#index3371320
#% 
#!
  
#*"Simple Rules for Editors"? Here is One Rule to Tackle Neglected Problems of Publishing.
#@Thomas C. Erren,Michael Erren
#t2007
#cPLoS Computational Biology
#index3371809
#% 
#!
  
#*Reply to "Ten Simple Rules for Getting Published".
#@Eric Grosch
#t2007
#cPLoS Computational Biology
#index3371279
#% 
#!
  
#*Essential Requirements for Robust Signaling in Hfq Dependent Small RNA Networks.
#@David N. Adamson,Han N. Lim
#t2011
#cPLoS Computational Biology
#index3371242
#% 
#!
  
#*Understanding the Degradation of Hominid Gene Control.
#@Peter D. Keightley,Martin J. Lercher,Adam Eyre-Walker
#t2006
#cPLoS Computational Biology
#index3371678
#% 
#!
  
#*Inversion of the Balance between Hydrophobic and Hydrogen Bonding Interactions in Protein Folding and Aggregation.
#@Anthony W. Fitzpatrick,Tuomas P. J. Knowles,Christopher A. Waudby,Michele Vendruscolo,Christopher M. Dobson
#t2011
#cPLoS Computational Biology
#index3371492
#% 
#!
  
#*Balanced Synaptic Input Shapes the Correlation between Neural Spike Trains.
#@Ashok Litwin-Kumar,Anne-Marie M. Oswald,Nathaniel N. Urban,Brent Doiron
#t2011
#cPLoS Computational Biology
#index3371310
#% 
#!
  
#*Multiscale Modeling of Red Blood Cell Mechanics and Blood Flow in Malaria.
#@Dmitry A. Fedosov,Huan Lei,Bruce Caswell,Subra Suresh,George E. Karniadakis
#t2011
#cPLoS Computational Biology
#index3371390
#% 
#!
  
#*Small Regulatory RNAs May Sharpen Spatial Expression Patterns.
#@Erel Levine,Peter McHale,Herbert Levine
#t2007
#cPLoS Computational Biology
#index3371403
#% 
#!
  
#*Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets.
#@Silpa Suthram,Joel Dudley,Annie P. Chiang,Rong Chen,Trevor Hastie,Atul J. Butte
#t2010
#cPLoS Computational Biology
#index3371527
#% 
#!
  
#*Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics.
#@Philippe Lemey,Sergei L. Kosakovsky Pond,Alexei J. Drummond,Oliver G. Pybus,Beth Shapiro,Helena Barroso,Nuno Taveira,Andrew Rambaut
#t2007
#cPLoS Computational Biology
#index3371250
#% 
#!
  
#*Structural Characteristics of Novel Protein Folds.
#@Narcis Fernandez-Fuentes,Joseph M. Dybas,András Fiser
#t2010
#cPLoS Computational Biology
#index3371402
#% 
#!
  
#*Automatic Filtering and Substantiation of Drug Safety Signals.
#@Anna Bauer-Mehren,Erik M. van Mulligen,Paul Avillach,María del Carmen Carrascosa,Ricard García-Serna,Janet Piñero,Bharat Singh,Pedro Lopes,José Luís Oliveira,Gayo Diallo,Ernst Ahlberg Helgee,Scott Boyer,Jordi Mestres,Ferran Sanz,Jan A. Kors,Laura Inés Furlong
#t2012
#cPLoS Computational Biology
#index3371811
#% 
#!
  
#*Coordinate Regulation of G Protein Signaling via Dynamic Interactions of Receptor and GAP.
#@Marc Turcotte,Wei Tang,Elliott M. Ross
#t2008
#cPLoS Computational Biology
#index3371567
#% 
#!
  
#*Risk Maps for the Spread of Highly Pathogenic Avian Influenza in Poultry.
#@Gert Jan Boender,Thomas J. Hagenaars,Annemarie Bouma,Gonnie Nodelijk,Armin R. W. Elbers,Mart C. M. de Jong,Michiel van Boven
#t2007
#cPLoS Computational Biology
#index3371383
#% 
#!
  
#*Structural Adaptation and Heterogeneity of Normal and Tumor Microvascular Networks.
#@Axel R. Pries,Annemiek J. M. Cornelissen,Anoek A. Sloot,Marlene Hinkeldey,Matthew R. Dreher,Michael Höpfner,Mark W. Dewhirst,Timothy W. Secomb
#t2009
#cPLoS Computational Biology
#index3371458
#% 
#!
  
#*Evolution of Complex Modular Biological Networks.
#@Arend Hintze,Christoph Adami
#t2008
#cPLoS Computational Biology
#index3371339
#% 
#!
  
#*Failure of Adaptive Self-Organized Criticality during Epileptic Seizure Attacks.
#@Christian Meisel,Alexander Storch,Susanne Hallmeyer-Elgner,Ed Bullmore,Thilo Gross
#t2012
#cPLoS Computational Biology
#index3371762
#% 
#!
  
#*Integrating Flux Balance Analysis into Kinetic Models to Decipher the Dynamic Metabolism of MR-1.
#@Xueyang Feng,You Xu,Yixin Chen,Yinjie J. Tang
#t2012
#cPLoS Computational Biology
#index3371502
#% 
#!
  
#*Are Long-Range Structural Correlations Behind the Aggregration Phenomena of Polyglutamine Diseases?
#@Mahmoud Moradi,Volodymyr Babin,Christopher Roland,Celeste Sagui
#t2012
#cPLoS Computational Biology
#index3371494
#% 
#!
  
#*Redundancy and the Evolution of -Regulatory Element Multiplicity.
#@Tiago Paixão,Ricardo B. R. Azevedo
#t2010
#cPLoS Computational Biology
#index3371482
#% 
#!
  
#*Predicting Positive p53 Cancer Rescue Regions Using Most Informative Positive (MIP) Active Learning.
#@Samuel A. Danziger,Roberta Baronio,Lydia Ho,Linda Hall,Kirsty Salmon,G. Wesley Hatfield,Peter Kaiser,Richard H. Lathrop
#t2009
#cPLoS Computational Biology
#index3371270
#% 
#!
  
#*Pathway Analysis of Expression Data: Deciphering Functional Building Blocks of Complex Diseases.
#@Frank Emmert-Streib,Galina V. Glazko
#t2011
#cPLoS Computational Biology
#index3371536
#% 
#!
  
#*Mapping Gene Associations in Human Mitochondria using Clinical Disease Phenotypes.
#@Curt Scharfe,Henry Horng-Shing Lu,Jutta K. Neuenburg,Edward A. Allen,Guan-Cheng Li,Thomas Klopstock,Tina M. Cowan,Gregory M. Enns,Ronald W. Davis
#t2009
#cPLoS Computational Biology
#index3371742
#% 
#!
  
#*Memory Switches in Chemical Reaction Space.
#@Naren Ramakrishnan,Upinder S. Bhalla
#t2008
#cPLoS Computational Biology
#index3371782
#% 
#!
  
#*Three People Can Synchronize as Coupled Oscillators during Sports Activities.
#@Keiko Yokoyama,Yuji Yamamoto
#t2011
#cPLoS Computational Biology
#index3371459
#% 
#!
  
#*Enzyme Kinetics of the Mitochondrial Deoxyribonucleoside Salvage Pathway Are Not Sufficient to Support Rapid mtDNA Replication.
#@Vishal V. Gandhi,David C. Samuels
#t2011
#cPLoS Computational Biology
#index3371642
#% 
#!
  
#*An End to Endless Forms: Epistasis, Phenotype Distribution Bias, and Nonuniform Evolution.
#@Elhanan Borenstein,David C. Krakauer
#t2008
#cPLoS Computational Biology
#index3371467
#% 
#!
  
#*Network Analysis of Intrinsic Functional Brain Connectivity in Alzheimer's Disease.
#@Kaustubh Supekar,Vinod Menon,Daniel L. Rubin,Mark A. Musen,Michael D. Greicius
#t2008
#cPLoS Computational Biology
#index3371464
#% 
#!
  
#*Network Evolution: Rewiring and Signatures of Conservation in Signaling.
#@Mark G. F. Sun,Martin Sikora,Michael Costanzo,Charles Boone,Philip M. Kim
#t2012
#cPLoS Computational Biology
#index3371773
#% 
#!
  
#*Biosensor Approach to Psychopathology Classification.
#@Misha Koshelev,Terry Lohrenz,Marina Vannucci,P. Read Montague
#t2010
#cPLoS Computational Biology
#index3371284
#% 
#!
  
#*A Primer on Regression Methods for Decoding -Regulatory Logic.
#@Debopriya Das,Matteo Pellegrini,Joe W. Gray
#t2009
#cPLoS Computational Biology
#index3371306
#% 
#!
  
#*Red Queen Dynamics with Non-Standard Fitness Interactions.
#@Jan Engelstädter,Sebastian Bonhoeffer
#t2009
#cPLoS Computational Biology
#index3371277
#% 
#!
  
#*An Introduction to Biomolecular Graphics.
#@Cameron Mura,Colin M. McCrimmon,Jason Vertrees,Michael R. Sawaya
#t2010
#cPLoS Computational Biology
#index3371652
#% 
#!
  
#*A Mechanistic View of the Role of E3 in Sumoylation.
#@Melda Tozluoglu,Ezgi Karaca,Ruth Nussinov,Türkan Haliloglu
#t2010
#cPLoS Computational Biology
#index3371555
#% 
#!
  
#*Rational Mutational Analysis of a Multidrug MFS Transporter CaMdr1p of by Employing a Membrane Environment Based Computational Approach.
#@Khyati Kapoor,Mohd Rehan,Ajeeta Kaushiki,Ritu Pasrija,Andrew M. Lynn,Rajendra Prasad
#t2009
#cPLoS Computational Biology
#index3371373
#% 
#!
  
#*Conformational Changes and Slow Dynamics through Microsecond Polarized Atomistic Molecular Simulation of an Integral Kv1.2 Ion Channel.
#@Pär Bjelkmar,Perttu S. Niemelä,Ilpo Vattulainen,Erik Lindahl
#t2009
#cPLoS Computational Biology
#index3371237
#% 
#!
  
#*A Quick Guide for Developing Effective Bioinformatics Programming Skills.
#@Joel Dudley,Atul J. Butte
#t2009
#cPLoS Computational Biology
#index3371660
#% 
#!
  
#*Translational Systems Biology of Inflammation.
#@Yoram Vodovotz,Marie Csete,John Bartels,Steven Chang,Gary An
#t2008
#cPLoS Computational Biology
#index3371325
#% 
#!
  
#*Context-Specific Metabolic Networks Are Consistent with Experiments.
#@Scott A. Becker,Bernhard O. Palsson
#t2008
#cPLoS Computational Biology
#index3371228
#% 
#!
  
#*A Hierarchical Neuronal Model for Generation and Online Recognition of Birdsongs.
#@Izzet B. Yildiz,Stefan J. Kiebel
#t2011
#cPLoS Computational Biology
#index3371624
#% 
#!
  
#*B Cell Activation Triggered by the Formation of the Small Receptor Cluster: A Computational Study.
#@Beata Hat,Bogdan Kazmierczak,Tomasz Lipniacki
#t2011
#cPLoS Computational Biology
#index3371334
#% 
#!
  
#*Ras Conformational Switching: Simulating Nucleotide-Dependent Conformational Transitions with Accelerated Molecular Dynamics.
#@Barry J. Grant,Alemayehu A. Gorfe,James Andrew McCammon
#t2009
#cPLoS Computational Biology
#index3371764
#% 
#!
  
#*Predictability of Evolutionary Trajectories in Fitness Landscapes.
#@Alexander E. Lobkovsky,Yuri I. Wolf,Eugene V. Koonin
#t2011
#cPLoS Computational Biology
#index3371568
#% 
#!
  
#*Genome-Scale Computational Biology and Bioinformatics in Australia.
#@Mark A. Ragan,Tim Littlejohn,Bruce Ross
#t2008
#cPLoS Computational Biology
#index3371585
#% 
#!
  
#*Analysis of Combinatorial Regulation: Scaling of Partnerships between Regulators with the Number of Governed Targets.
#@Nitin Bhardwaj,Matthew B. Carson,Alexej Abyzov,Koon-Kiu Yan,Hui Lu,Mark B. Gerstein
#t2010
#cPLoS Computational Biology
#index3371445
#% 
#!
  
#*Protein Complexes are Central in the Yeast Genetic Landscape.
#@Magali Michaut,Anastasia Baryshnikova,Michael Costanzo,Chad L. Myers,Brenda J. Andrews,Charles Boone,Gary D. Bader
#t2011
#cPLoS Computational Biology
#index3371348
#% 
#!
  
#*Fast Statistical Alignment.
#@Robert K. Bradley,Adam Roberts,Michael Smoot,Sudeep Juvekar,Jaeyoung Do,Colin N. Dewey,Ian Holmes,Lior Pachter
#t2009
#cPLoS Computational Biology
#index3371257
#% 
#!
  
#*Evolution of Function in the "Two Dinucleotide Binding Domains" Flavoproteins.
#@Sunil Ojha,Elaine C. Meng,Patricia C. Babbitt
#t2007
#cPLoS Computational Biology
#index3371558
#% 
#!
  
#*Noise Driven Evolutionary Waves.
#@Oskar Hallatschek
#t2011
#cPLoS Computational Biology
#index3371783
#% 
#!
  
#*Combinatorial Binding in Human and Mouse Embryonic Stem Cells Identifies Conserved Enhancers Active in Early Embryonic Development.
#@Jonathan Göke,Marc Jung,Sarah Behrens,Lukas Chavez,Sean O'Keeffe,Bernd Timmermann,Hans Lehrach,James Adjaye,Martin Vingron
#t2011
#cPLoS Computational Biology
#index3371821
#% 
#!
  
#*Action Potential Energy Efficiency Varies Among Neuron Types in Vertebrates and Invertebrates.
#@Biswa Sengupta,Martin Stemmler,Simon B. Laughlin,Jeremy E. Niven
#t2010
#cPLoS Computational Biology
#index3371715
#% 
#!
  
#*Statistical Analysis of 3D Images Detects Regular Spatial Distributions of Centromeres and Chromocenters in Animal and Plant Nuclei.
#@Philippe Andrey,Kiên Kiêu,Clémence Kress,Gaëtan Lehmann,Leïla Tirichine,Zichuan Liu,Eric Biot,Pierre-Gaël Adenot,Cathy Hue-Beauvais,Nicole Houba-Hérin,Véronique Duranthon,Eve Devinoy,Nathalie Beaujean,Valérie Gaudin,Yves Maurin,Pascale Debey
#t2010
#cPLoS Computational Biology
#index3371291
#% 
#!
  
#*A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes.
#@Alexis P. Yelton,Brian C. Thomas,Sheri L. Simmons,Paul Wilmes,Adam Zemla,Michael P. Thelen,Nicholas Justice,Jillian F. Banfield
#t2011
#cPLoS Computational Biology
#index3371705
#% 
#!
  
#*Circadian Clocks Are Resounding in Peripheral Tissues.
#@Andrey A. Ptitsyn,Sanjin Zvonic,Steven A. Conrad,L. Keith Scott,Randall L. Mynatt,Jeffrey M. Gimble
#t2006
#cPLoS Computational Biology
#index3371389
#% 
#!
  
#*Identification of Genome-Scale Metabolic Network Models Using Experimentally Measured Flux Profiles.
#@Markus J. Herrgård,Stephen S. Fong,Bernhard Ø. Palsson
#t2006
#cPLoS Computational Biology
#index3371752
#% 
#!
  
#*The Role of Oligomerization and Cooperative Regulation in Protein Function: The Case of Tryptophan Synthase.
#@M. Qaiser Fatmi,Chia-en A. Chang
#t2010
#cPLoS Computational Biology
#index3371621
#% 
#!
  
#*Quantifying Type-Specific Reproduction Numbers for Nosocomial Pathogens: Evidence for Heightened Transmission of an Asian Sequence Type 239 MRSA Clone.
#@Ben S. Cooper,Theodore Kypraios,Rahul Batra,Duncan Wyncoll,Olga Tosas,Jonathan D. Edgeworth
#t2012
#cPLoS Computational Biology
#index3371687
#% 
#!
  
#*Predicting Cellular Growth from Gene Expression Signatures.
#@Edoardo M. Airoldi,Curtis Huttenhower,David Gresham,Charles Lu,Amy A. Caudy,Maitreya J. Dunham,James R. Broach,David Botstein,Olga G. Troyanskaya
#t2009
#cPLoS Computational Biology
#index3371487
#% 
#!
  
#*Axial and Radial Forces of Cross-Bridges Depend on Lattice Spacing.
#@C. David Williams,Michael Regnier,Thomas L. Daniel
#t2010
#cPLoS Computational Biology
#index3371222
#% 
#!
  
#*A First Attempt to Bring Computational Biology into Advanced High School Biology Classrooms.
#@Suzanne Renick Gallagher,William Coon,Kristin Donley,Abby Scott,Debra Goldberg
#t2011
#cPLoS Computational Biology
#index3371501
#% 
#!
  
#*Comparing the and Genomes Reveals an Ancient Split in the Conosa Lineage.
#@Jie Song,Qikai Xu,Rolf Olsen,William F. Loomis,Gad Shaulsky,Adam Kuspa,Richard Sucgang
#t2005
#cPLoS Computational Biology
#index3371708
#% 
#!
  
#*A Novel Approach to Pharmacodynamic Assessment of Antimicrobial Agents: New Insights to Dosing Regimen Design.
#@Vincent H. Tam,Michael Nikolaou
#t2011
#cPLoS Computational Biology
#index3371761
#% 
#!
  
#*A Computational Pipeline for High- Throughput Discovery of -Regulatory Noncoding RNA in Prokaryotes.
#@Zizhen Yao,Jeffrey Barrick,Zasha Weinberg,Shane Neph,Ronald R. Breaker,Martin Tompa,Walter L. Ruzzo
#t2007
#cPLoS Computational Biology
#index3371431
#% 
#!
  
#*SHRiMP: Accurate Mapping of Short Color-space Reads.
#@Stephen M. Rumble,Phil Lacroute,Adrian V. Dalca,Marc Fiume,Arend Sidow,Michael Brudno
#t2009
#cPLoS Computational Biology
#index3371395
#% 
#!
  
#*Combining Structure and Sequence Information Allows Automated Prediction of Substrate Specificities within Enzyme Families.
#@Marc Röttig,Christian Rausch,Oliver Kohlbacher
#t2010
#cPLoS Computational Biology
#index3371603
#% 
#!
  
#*Control of Whole Heart Geometry by Intramyocardial Mechano-Feedback: A Model Study.
#@Theo Arts,Joost Lumens,Wilco Kroon,Tammo Delhaas
#t2012
#cPLoS Computational Biology
#index3371569
#% 
#!
  
#*Revealing Posttranscriptional Regulatory Elements Through Network-Level Conservation.
#@Chang S. Chan,Olivier Elemento,Saeed Tavazoie
#t2005
#cPLoS Computational Biology
#index3371640
#% 
#!
  
#*Computational Design of a PDZ Domain Peptide Inhibitor that Rescues CFTR Activity.
#@Kyle E. Roberts,Patrick R. Cushing,Prisca Boisguerin,Dean R. Madden,Bruce Randall Donald
#t2012
#cPLoS Computational Biology
#index3371698
#% 
#!
  
#*Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality.
#@Elena Zotenko,Julian Mestre,Dianne P. O'Leary,Teresa M. Przytycka
#t2008
#cPLoS Computational Biology
#index3371745
#% 
#!
  
#*The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies.
#@Patrick D. Schloss
#t2010
#cPLoS Computational Biology
#index3371286
#% 
#!
  
#*Optimal Drug Synergy in Antimicrobial Treatments.
#@Joseph Peter Torella,Remy Chait,Roy Kishony
#t2010
#cPLoS Computational Biology
#index3371519
#% 
#!
  
#*Perturbation-Response Scanning Reveals Ligand Entry-Exit Mechanisms of Ferric Binding Protein.
#@Canan Atilgan,Ali Rana Atilgan
#t2009
#cPLoS Computational Biology
#index3371808
#% 
#!
  
#*Co-Regulation of Metabolic Genes Is Better Explained by Flux Coupling Than by Network Distance.
#@Richard A. Notebaart,Bas Teusink,Roland J. Siezen,Balázs Papp
#t2008
#cPLoS Computational Biology
#index3371670
#% 
#!
  
#*Neural Network Mechanisms Underlying Stimulus Driven Variability Reduction.
#@Gustavo Deco,Etienne Hugues
#t2012
#cPLoS Computational Biology
#index3371549
#% 
#!
  
#*Viral and Latent Reservoir Persistence in HIV-1-Infected Patients on Therapy.
#@Hwijin Kim,Alan S. Perelson
#t2006
#cPLoS Computational Biology
#index3371772
#% 
#!
  
#*Decelerating Spread of West Nile Virus by Percolation in a Heterogeneous Urban Landscape.
#@Krisztian Magori,Waheed I. Bajwa,Sarah Bowden,John M. Drake
#t2011
#cPLoS Computational Biology
#index3371723
#% 
#!
  
#*The Stem Cell Population of the Human Colon Crypt: Analysis via Methylation Patterns.
#@Pierre Nicolas,Kyoung-Mee Kim,Darryl Shibata,Simon Tavaré
#t2007
#cPLoS Computational Biology
#index3371522
#% 
#!
  
#*'Glocal' Robustness Analysis and Model Discrimination for Circadian Oscillators.
#@Marc Hafner,Heinz Koeppl,Martin Hasler,Andreas Wagner
#t2009
#cPLoS Computational Biology
#index3371376
#% 
#!
  
#*Coincidence Detection of Place and Temporal Context in a Network Model of Spiking Hippocampal Neurons.
#@Yael Katz,William L. Kath,Nelson Spruston,Michael E. Hasselmo
#t2007
#cPLoS Computational Biology
#index3371631
#% 
#!
  
#*Transport Enhancement as a Plausible Unifying Mechanism for Auxin Transport in Meristem Development.
#@Szymon Stoma,Mikael Lucas,Jérôme Chopard,Marianne Schaedel,Jan Traas,Christophe Godin
#t2008
#cPLoS Computational Biology
#index3371278
#% 
#!
  
#*T-Cell Epitope Prediction: Rescaling Can Mask Biological Variation between MHC Molecules.
#@Aidan MacNamara,Ulrich D. Kadolsky,Charles R. M. Bangham,Becca Asquith
#t2009
#cPLoS Computational Biology
#index3371661
#% 
#!
  
#*Neural Computation via Neural Geometry: A Place Code for Inter-whisker Timing in the Barrel Cortex?
#@Stuart P. Wilson,James A. Bednar,Tony J. Prescott,Benjamin Mitchinson
#t2011
#cPLoS Computational Biology
#index3371734
#% 
#!
  
#*The Fragile Breakage versus Random Breakage Models of Chromosome Evolution.
#@Qian Peng,Pavel A. Pevzner,Glenn Tesler
#t2006
#cPLoS Computational Biology
#index3371798
#% 
#!
  
#*Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks.
#@Jong Min Lee,Erwin P. Gianchandani,James A. Eddy,Jason A. Papin
#t2008
#cPLoS Computational Biology
#index3371367
#% 
#!
  
#*A Semi-Supervised Method for Predicting Transcription Factor-Gene Interactions in .
#@Jason Ernst,Qasim K. Beg,Krin A. Kay,Gábor Balázsi,Zoltán N. Oltvai,Ziv Bar-Joseph
#t2008
#cPLoS Computational Biology
#index3371381
#% 
#!
  
#*Grid Cells, Place Cells, and Geodesic Generalization for Spatial Reinforcement Learning.
#@Nicholas J. Gustafson,Nathaniel D. Daw
#t2011
#cPLoS Computational Biology
#index3371341
#% 
#!
  
#*A Covering Method for Detecting Genetic Associations between Rare Variants and Common Phenotypes.
#@Gaurav Bhatia,Vikas Bansal,Olivier Harismendy,Nicholas J. Schork,Eric J. Topol,Kelly A. Frazer,Vineet Bafna
#t2010
#cPLoS Computational Biology
#index3371605
#% 
#!
  
#*A Structure-Based Approach for Detection of Thiol Oxidoreductases and Their Catalytic Redox-Active Cysteine Residues.
#@Stefano M. Marino,Vadim N. Gladyshev
#t2009
#cPLoS Computational Biology
#index3371263
#% 
#!
  
#*An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1.
#@Sergei L. Kosakovsky Pond,David Posada,Eric Stawiski,Colombe Chappey,Art F. Y. Poon,Gareth Hughes,Esther Fearnhill,Mike B. Gravenor,Andrew J. Leigh Brown,Simon D. W. Frost
#t2009
#cPLoS Computational Biology
#index3371410
#% 
#!
  
#*Distributed Representations Accelerate Evolution of Adaptive Behaviours.
#@James V. Stone
#t2007
#cPLoS Computational Biology
#index3371229
#% 
#!
  
#*Action Potential Initiation in the Hodgkin-Huxley Model.
#@Lucy J. Colwell,Michael P. Brenner
#t2009
#cPLoS Computational Biology
#index3371444
#% 
#!
  
#*Binding-Induced Folding of a Natively Unstructured Transcription Factor.
#@Adrian Gustavo Turjanski,J. Silvio Gutkind,Robert B. Best,Gerhard Hummer
#t2008
#cPLoS Computational Biology
#index3371513
#% 
#!
  
#*Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics.
#@Stephen A. Ramsey,Sandy L. Klemm,Daniel E. Zak,Kathleen A. Kennedy,Vesteinn Thorsson,Bin Li,Mark Gilchrist,Elizabeth S. Gold,Carrie D. Johnson,Vladimir Litvak,Garnet Navarro,Jared C. Roach,Carrie M. Rosenberger,Alistair G. Rust,Natalya Yudkovsky,Alan Aderem,Ilya Shmulevich
#t2008
#cPLoS Computational Biology
#index3371592
#% 
#!
  
#*Modelling Reveals Kinetic Advantages of Co-Transcriptional Splicing.
#@Stuart Aitken,Ross D. Alexander,Jean D. Beggs
#t2011
#cPLoS Computational Biology
#index3371614
#% 
#!
  
#*Bayesian Comparison of Neurovascular Coupling Models Using EEG-fMRI.
#@Maria J. Rosa,James Kilner,Will D. Penny
#t2011
#cPLoS Computational Biology
#index3371528
#% 
#!
  
#*The Spatiotemporal Pattern of Src Activation at Lipid Rafts Revealed by Diffusion-Corrected FRET Imaging.
#@Shaoying Lu,Mingxing Ouyang,Jihye Seong,Jin Zhang,Shu Chien,Yingxiao Wang
#t2008
#cPLoS Computational Biology
#index3371578
#% 
#!
  
#*Functional Characterization of Transcription Factor Motifs Using Cross-species Comparison across Large Evolutionary Distances.
#@Jaebum Kim,Ryan Cunningham,Brian James,Stefan Wyder,Joshua D. Gibson,Oliver Niehuis,Evgeny M. Zdobnov,Hugh M. Robertson,Gene E. Robinson,John H. Werren,Saurabh Sinha
#t2010
#cPLoS Computational Biology
#index3371507
#% 
#!
  
#*How to Understand the Cell by Breaking It: Network Analysis of Gene Perturbation Screens.
#@Florian Markowetz
#t2010
#cPLoS Computational Biology
#index3371416
#% 
#!
  
#*Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation.
#@Joti Giordano,Yongchao Ge,Yevgeniy Gelfand,György Abrusán,Gary Benson,Peter E. Warburton
#t2007
#cPLoS Computational Biology
#index3371326
#% 
#!
  
#*Mechanical Network in Titin Immunoglobulin from Force Distribution Analysis.
#@Wolfram Stacklies,M. Cristina Vega,Matthias Wilmanns,Frauke Gräter
#t2009
#cPLoS Computational Biology
#index3371256
#% 
#!
  
#*How Synchronization Protects from Noise.
#@Nicolas Tabareau,Jean-Jacques E. Slotine,Quang-Cuong Pham
#t2010
#cPLoS Computational Biology
#index3371765
#% 
#!
  
#*A Quick Guide for Computer-Assisted Instruction in Computational Biology and Bioinformatics.
#@Manuel João Costa,Eduardo Galembeck,Guilherme A. Marson,Bayardo B. Torres
#t2008
#cPLoS Computational Biology
#index3371667
#% 
#!
  
#*Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions.
#@Thomas Manke,Helge G. Roider,Martin Vingron
#t2008
#cPLoS Computational Biology
#index3371775
#% 
#!
  
#*Uncovering the Dynamics of Cardiac Systems Using Stochastic Pacing and Frequency Domain Analyses.
#@Mathieu Lemay,Enno de Lange,Jan P. Kucera
#t2012
#cPLoS Computational Biology
#index3371634
#% 
#!
  
#*Novel Approach to Meta-Analysis of Microarray Datasets Reveals Muscle Remodeling-related Drug Targets and Biomarkers in Duchenne Muscular Dystrophy.
#@Ekaterina Kotelnikova,Maria A. Shkrob,Mikhail A. Pyatnitskiy,Alessandra Ferlini,Nikolai Daraselia
#t2012
#cPLoS Computational Biology
#index3371230
#% 
#!
  
#*Simultaneous Clustering of Multiple Gene Expression and Physical Interaction Datasets.
#@Manikandan Narayanan,Adrian Vetta,Eric E. Schadt,Jun Zhu
#t2010
#cPLoS Computational Biology
#index3371305
#% 
#!
  
#*Measures of Clade Confidence Do Not Correlate with Accuracy of Phylogenetic Trees.
#@Barry G. Hall,Stephen J. Salipante
#t2007
#cPLoS Computational Biology
#index3371347
#% 
#!
  
#*Mutation D816V Alters the Internal Structure and Dynamics of c-KIT Receptor Cytoplasmic Region: Implications for Dimerization and Activation Mechanisms.
#@Elodie Laine,Isaure Chauvot de Beauchêne,David Perahia,Christian Auclair,Luba Tchertanov
#t2011
#cPLoS Computational Biology
#index3371311
#% 
#!
  
#*Hemodynamic Traveling Waves in Human Visual Cortex.
#@Kevin M. Aquino,Mark M. Schira,Peter A. Robinson,Peter M. Drysdale,Michael Breakspear
#t2012
#cPLoS Computational Biology
#index3371823
#% 
#!
  
#*Biophysical Parameters Modification Could Overcome Essential Hearing Gaps.
#@Albert Kern,C. Heid,Willi-Hans Steeb,Norbert Stoop,Ruedi Stoop
#t2008
#cPLoS Computational Biology
#index3371362
#% 
#!
  
#*Welcome to "Education".
#@Fran Lewitter
#t2006
#cPLoS Computational Biology
#index3371584
#% 
#!
  
#*Intragenomic Matching Reveals a Huge Potential for miRNA-Mediated Regulation in Plants.
#@Morten Lindow,Anders Jacobsen,Sanne Nygaard,Yuan Mang,Anders Krogh
#t2007
#cPLoS Computational Biology
#index3371741
#% 
#!
  
#*Optimality of Mutation and Selection in Germinal Centers.
#@Jingshan Zhang,Eugene I. Shakhnovich
#t2010
#cPLoS Computational Biology
#index3371285
#% 
#!
  
#*Modeling the Effects of Cell Cycle M-phase Transcriptional Inhibition on Circadian Oscillation.
#@Bin Kang,Yuan-Yuan Li,Xiao Chang,Lei Liu,Yi-Xue Li
#t2008
#cPLoS Computational Biology
#index3371803
#% 
#!
  
#*Slower Visuomotor Corrections with Unchanged Latency are Consistent with Optimal Adaptation to Increased Endogenous Noise in the Elderly.
#@Michael Sherback,Francisco J. Valero Cuevas,Raffaello D'Andrea
#t2010
#cPLoS Computational Biology
#index3371802
#% 
#!
  
#*Dynamics of Immune Escape during HIV/SIV Infection.
#@Christian L. Althaus,Rob J. De Boer
#t2008
#cPLoS Computational Biology
#index3371520
#% 
#!
  
#*Meta-analysis of Inter-species Liver Co-expression Networks Elucidates Traits Associated with Common Human Diseases.
#@Kai Wang,Manikandan Narayanan,Hua Zhong,Martin Tompa,Eric E. Schadt,Jun Zhu
#t2009
#cPLoS Computational Biology
#index3371575
#% 
#!
  
#*What Makes Ribosome-Mediated Transcriptional Attenuation Sensitive to Amino Acid Limitation?
#@Johan Elf,Måns Ehrenberg
#t2005
#cPLoS Computational Biology
#index3371236
#% 
#!
  
#*Dynamics and Control of Diseases in Networks with Community Structure.
#@Marcel Salathé,James H. Jones
#t2010
#cPLoS Computational Biology
#index3371653
#% 
#!
  
#*Correction: How Does Cross-Reactive Stimulation Affect the Longevity of CD8+ T Cell Memory?
#@Vitaly V. Ganusov,Sergei S. Pilyugin,Rafi Ahmed,Rustom Antia
#t2006
#cPLoS Computational Biology
#index3371625
#% 
#!
  
#*Integrated Information Increases with Fitness in the Evolution of Animats.
#@Jeffrey A. Edlund,Nicolas Chaumont,Arend Hintze,Christof Koch,Giulio Tononi,Christoph Adami
#t2011
#cPLoS Computational Biology
#index3371709
#% 
#!
  
#*Ab Initio Prediction of Transcription Factor Targets Using Structural Knowledge.
#@Tommy Kaplan,Nir Friedman,Hanah Margalit
#t2005
#cPLoS Computational Biology
#index3371676
#% 
#!
  
#*Identification of a Novel Class of Farnesylation Targets by Structure-Based Modeling of Binding Specificity.
#@Nir London,Corissa L. Lamphear,James L. Hougland,Carol A. Fierke,Ora Schueler-Furman
#t2011
#cPLoS Computational Biology
#index3371718
#% 
#!
  
#*Optimal Information Transfer in the Cortex through Synchronization.
#@Andres Buehlmann,Gustavo Deco
#t2010
#cPLoS Computational Biology
#index3371472
#% 
#!
  
#*Epitope Flexibility and Dynamic Footprint Revealed by Molecular Dynamics of a pMHC-TCR Complex.
#@Cyril F. Reboul,Grischa R. Meyer,Benjamin T. Porebski,Natalie A. Borg,Ashley M. Buckle
#t2012
#cPLoS Computational Biology
#index3371788
#% 
#!
  
#*The Roots of Bioinformatics in Theoretical Biology.
#@Paulien Hogeweg
#t2011
#cPLoS Computational Biology
#index3371437
#% 
#!
  
#*Determinants of the Spatiotemporal Dynamics of the 2009 H1N1 Pandemic in Europe: Implications for Real-Time Modelling.
#@Stefano Merler,Marco Ajelli,Andrea Pugliese,Neil M. Ferguson
#t2011
#cPLoS Computational Biology
#index3371425
#% 
#!
  
#*A Primer on Python for Life Science Researchers.
#@Sebastian Bassi
#t2007
#cPLoS Computational Biology
#index3371481
#% 
#!
  
#*Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis.
#@Matthew A. Hibbs,Chad L. Myers,Curtis Huttenhower,David C. Hess,Kai Li,Amy A. Caudy,Olga G. Troyanskaya
#t2009
#cPLoS Computational Biology
#index3371818
#% 
#!
  
#*Role of Histone Tails in Structural Stability of the Nucleosome.
#@Mithun Biswas,Karine Voltz,Jeremy C. Smith,Jörg Langowski
#t2011
#cPLoS Computational Biology
#index3371556
#% 
#!
  
#*International Society for Computational Biology Honors Michael Ashburner and Olga Troyanskaya with Top Bioinformatics/Computational Biology Awards for 2011.
#@Justin Mullins,B. J. Morrison McKay
#t2011
#cPLoS Computational Biology
#index3371368
#% 
#!
  
#*Modelling the Spread of HIV Immune Escape Mutants in a Vaccinated Population.
#@Helen R. Fryer,Angela R. McLean
#t2011
#cPLoS Computational Biology
#index3371514
#% 
#!
  
#*Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement.
#@Laurence Calzone,Laurent Tournier,Simon Fourquet,Denis Thieffry,Boris Zhivotovsky,Emmanuel Barillot,Andrei Zinovyev
#t2010
#cPLoS Computational Biology
#index3371312
#% 
#!
  
#*Why Don't CD8+ T Cells Reduce the Lifespan of SIV-Infected Cells In Vivo?
#@Marjet Elemans,Nafisa-Katrin Seich al Basatena,Nichole R. Klatt,Christos Gkekas,Guido Silvestri,Becca Asquith
#t2011
#cPLoS Computational Biology
#index3371817
#% 
#!
  
#*Efficiency and Cost of Economical Brain Functional Networks.
#@Sophie Achard,Ed Bullmore
#t2007
#cPLoS Computational Biology
#index3371570
#% 
#!
  
#*Mitochondrial Variability as a Source of Extrinsic Cellular Noise.
#@Iain G. Johnston,Bernadett Gaal,Ricardo Pires das Neves,Tariq Enver,Francisco J. Iborra,Nick S. Jones
#t2012
#cPLoS Computational Biology
#index3371613
#% 
#!
  
#*Dendritic Spikes Amplify the Synaptic Signal to Enhance Detection of Motion in a Simulation of the Direction-Selective Ganglion Cell.
#@Michael J. Schachter,Nicholas Oesch,Robert G. Smith,W. Rowland Taylor
#t2010
#cPLoS Computational Biology
#index3371249
#% 
#!
  
#*Model-Based Therapeutic Correction of Hypothalamic-Pituitary-Adrenal Axis Dysfunction.
#@Amos Ben-Zvi,Suzanne D. Vernon,Gordon Broderick
#t2009
#cPLoS Computational Biology
#index3371611
#% 
#!
  
#*Receptive Field Inference with Localized Priors.
#@Mijung Park,Jonathan Pillow
#t2011
#cPLoS Computational Biology
#index3371632
#% 
#!
  
#*Ion Channel Density Regulates Switches between Regular and Fast Spiking in Soma but Not in Axons.
#@Hugo Zeberg,Clas Blomberg,Peter Århem
#t2010
#cPLoS Computational Biology
#index3371240
#% 
#!
  
#*Filling-In and Suppression of Visual Perception from Context: A Bayesian Account of Perceptual Biases by Contextual Influences.
#@Zhaoping Li,Jingling Li
#t2008
#cPLoS Computational Biology
#index3371480
#% 
#!
  
#*Detecting Remote Evolutionary Relationships among Proteins by Large-Scale Semantic Embedding.
#@Iain Melvin,Jason Weston,William Stafford Noble,Christina S. Leslie
#t2011
#cPLoS Computational Biology
#index3371797
#% 
#!
  
#*A Logical Model Provides Insights into T Cell Receptor Signaling.
#@Julio Saez-Rodriguez,Luca Simeoni,Jonathan A. Lindquist,Rebecca Hemenway,Ursula Bommhardt,Boerge Arndt,Utz-Uwe Haus,Robert Weismantel,Ernst Dieter Gilles,Steffen Klamt,Burkhart Schraven
#t2007
#cPLoS Computational Biology
#index3371396
#% 
#!
  
#*Predicting Gene Expression from Sequence: A Reexamination.
#@Yuan Yuan,Lei Guo,Lei Shen,Jun S. Liu
#t2007
#cPLoS Computational Biology
#index3371639
#% 
#!
  
#*Transmission Selects for HIV-1 Strains of Intermediate Virulence: A Modelling Approach.
#@George Shirreff,Lorenzo Pellis,Oliver Laeyendecker,Christophe Fraser
#t2011
#cPLoS Computational Biology
#index3371500
#% 
#!
  
#*Optimal Workloop Energetics of Muscle-Actuated Systems: An Impedance Matching View.
#@Waleed A. Farahat,Hugh M. Herr
#t2010
#cPLoS Computational Biology
#index3371417
#% 
#!
  
#*A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast.
#@Leelavati Narlikar,Raluca Gordân,Alexander J. Hartemink
#t2007
#cPLoS Computational Biology
#index3371746
#% 
#!
  
#*Spike-Timing-Based Computation in Sound Localization.
#@Dan F. M. Goodman,Romain Brette
#t2010
#cPLoS Computational Biology
#index3371268
#% 
#!
  
#*Correction: A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation.
#@Daniel A. Beard
#t2006
#cPLoS Computational Biology
#index3371662
#% 
#!
  
#*Does Sex Speed Up Evolutionary Rate and Increase Biodiversity?
#@Carlos J. Melián,David Alonso,Stefano Allesina,Richard S. Condit,Rampal S. Etienne
#t2012
#cPLoS Computational Biology
#index3371690
#% 
#!
  
#*Design of a Trichromatic Cone Array.
#@Patrick Garrigan,Charles P. Ratliff,Jennifer M. Klein,Peter Sterling,David H. Brainard,Vijay Balasubramanian
#t2010
#cPLoS Computational Biology
#index3371358
#% 
#!
  
#*Knotted vs. Unknotted Proteins: Evidence of Knot-Promoting Loops.
#@Raffaello Potestio,Cristian Micheletti,Henri Orland
#t2010
#cPLoS Computational Biology
#index3371340
#% 
#!
  
#*Influence of Sequence Changes and Environment on Intrinsically Disordered Proteins.
#@Amrita Mohan,Vladimir N. Uversky,Predrag Radivojac
#t2009
#cPLoS Computational Biology
#index3371822
#% 
#!
  
#*How Force Might Activate Talin's Vinculin Binding Sites: SMD Reveals a Structural Mechanism.
#@Vesa P. Hytönen,Viola Vogel
#t2008
#cPLoS Computational Biology
#index3371620
#% 
#!
  
#*Switches, Excitable Responses and Oscillations in the Ring1B/Bmi1 Ubiquitination System.
#@Lan K. Nguyen,Javier Muñoz-García,Helene Maccario,Aaron Ciechanover,Walter Kolch,Boris N. Kholodenko
#t2011
#cPLoS Computational Biology
#index3371669
#% 
#!
  
#*Ribavirin-Induced Anemia in Hepatitis C Virus Patients Undergoing Combination Therapy.
#@Sheeja M. Krishnan,Narendra M. Dixit
#t2011
#cPLoS Computational Biology
#index3371259
#% 
#!
  
#*Simulating Microdosimetry in a Virtual Hepatic Lobule.
#@John Wambaugh,Imran Shah
#t2010
#cPLoS Computational Biology
#index3371258
#% 
#!
  
#*Robustness of Circadian Clocks to Daylight Fluctuations: Hints from the Picoeucaryote .
#@Quentin Thommen,Benjamin Pfeuty,Pierre-Emmanuel Morant,Florence Corellou,François-Yves Bouget,Marc Lefranc
#t2010
#cPLoS Computational Biology
#index3371726
#% 
#!
  
#*Unbiased Simulations Reveal the Inward-Facing Conformation of the Human Serotonin Transporter and Na Ion Release.
#@Heidi Koldsø,Pernille Noer,Julie Grouleff,Henriette Elisabeth Autzen,Steffen Sinning,Birgit Schiøtt
#t2011
#cPLoS Computational Biology
#index3371550
#% 
#!
  
#*Accurately Measuring Recombination between Closely Related HIV-1 Genomes.
#@Timothy E. Schlub,Redmond P. Smyth,Andrew J. Grimm,Johnson Mak,Miles P. Davenport
#t2010
#cPLoS Computational Biology
#index3371760
#% 
#!
  
#*Operating Regimes of Signaling Cycles: Statics, Dynamics, and Noise Filtering.
#@Carlos Gomez-Uribe,George C. Verghese,Leonid A. Mirny
#t2007
#cPLoS Computational Biology
#index3371535
#% 
#!
  
#*Mechanics of Channel Gating of the Nicotinic Acetylcholine Receptor.
#@Xinli Liu,Yechun Xu,Honglin Li,Xicheng Wang,Hualiang Jiang,Francisco J. Barrantes
#t2008
#cPLoS Computational Biology
#index3371451
#% 
#!
  
#*Robust Detection and Genotyping of Single Feature Polymorphisms from Gene Expression Data.
#@Minghui Wang,Xiaohua Hu,Gang Li,Lindsey J. Leach,Elena Potokina,Arnis Druka,Robbie Waugh,Michael J. Kearsey,Zewei Luo
#t2009
#cPLoS Computational Biology
#index3371359
#% 
#!
  
#*A Mathematical Framework for Protein Structure Comparison.
#@Wei Liu,Anuj Srivastava,Jinfeng Zhang
#t2011
#cPLoS Computational Biology
#index3371747
#% 
#!
  
#*Atomic-Resolution Simulations Predict a Transition State for Vesicle Fusion Defined by Contact of a Few Lipid Tails.
#@Peter M. Kasson,Erik Lindahl,Vijay S. Pande
#t2010
#cPLoS Computational Biology
#index3371767
#% 
#!
  
#*Identification of Synaptic Targets of Pumilio.
#@Gengxin Chen,Wanhe Li,Qing-Shuo Zhang,Michael Regulski,Nishi Sinha,Jody Barditch,Tim Tully,Adrian R. Krainer,Michael Q. Zhang,Josh Dubnau
#t2008
#cPLoS Computational Biology
#index3371349
#% 
#!
  
#*Dissociating Variability and Effort as Determinants of Coordination.
#@Ian O'Sullivan,Etienne Burdet,Jörn Diedrichsen
#t2009
#cPLoS Computational Biology
#index3371780
#% 
#!
  
#*Chemotactic Response and Adaptation Dynamics in .
#@Diana Clausznitzer,Olga Oleksiuk,Linda Løvdok,Victor Sourjik,Robert G. Endres
#t2010
#cPLoS Computational Biology
#index3371675
#% 
#!
  
#*Structure and Dynamics of the Membrane-Bound Cytochrome P450 2C9.
#@Vlad Cojocaru,Kia Balali-Mood,Mark S. P. Sansom,Rebecca C. Wade
#t2011
#cPLoS Computational Biology
#index3371626
#% 
#!
  
#*Social Contact Networks and Disease Eradicability under Voluntary Vaccination.
#@Ana Perisic,Chris T. Bauch
#t2009
#cPLoS Computational Biology
#index3371606
#% 
#!
  
#*Single-Molecule Dynamics Reveals Cooperative Binding-Folding in Protein Recognition.
#@Jin Wang,Qiang Lu,H. Peter Lu
#t2006
#cPLoS Computational Biology
#index3371466
#% 
#!
  
#*Impact of Limited Solvent Capacity on Metabolic Rate, Enzyme Activities, and Metabolite Concentrations of Glycolysis.
#@Alexei Vazquez,Marcio A. de Menezes,Albert-László Barabási,Zoltán N. Oltvai
#t2008
#cPLoS Computational Biology
#index3371251
#% 
#!
  
#*Influence of Low-Level Stimulus Features, Task Dependent Factors, and Spatial Biases on Overt Visual Attention.
#@Sepp Kollmorgen,Nora Nortmann,Sylvia Schröder,Peter König
#t2010
#cPLoS Computational Biology
#index3371695
#% 
#!
  
#*Subbarrel Patterns in Somatosensory Cortical Barrels Can Emerge from Local Dynamic Instabilities.
#@Bard Ermentrout,Daniel J. Simons,Peter W. Land
#t2009
#cPLoS Computational Biology
#index3371238
#% 
#!
  
#*Interpreting Expression Data with Metabolic Flux Models: Predicting Mycolic Acid Production.
#@Caroline Colijn,Aaron Brandes,Jeremy Zucker,Desmond S. Lun,Brian Weiner,Maha R. Farhat,Tan-Yun Cheng,D. Branch Moody,Megan Murray,James E. Galagan
#t2009
#cPLoS Computational Biology
#index3371461
#% 
#!
  
#*Depression-Biased Reverse Plasticity Rule Is Required for Stable Learning at Top-Down Connections.
#@Kendra S. Burbank,Gabriel Kreiman
#t2012
#cPLoS Computational Biology
#index3371796
#% 
#!
  
#*Spike-Timing Theory of Working Memory.
#@Botond Szatmáry,Eugene M. Izhikevich
#t2010
#cPLoS Computational Biology
#index3371591
#% 
#!
  
#*Context-Dependent Encoding of Fear and Extinction Memories in a Large-Scale Network Model of the Basal Amygdala.
#@Ioannis Vlachos,Cyril Herry,Andreas Lüthi,Ad Aertsen,Arvind Kumar
#t2011
#cPLoS Computational Biology
#index3371577
#% 
#!
  
#*Positive Selection, Relaxation, and Acceleration in the Evolution of the Human and Chimp Genome.
#@Leonardo Arbiza,Joaquín Dopazo,Hernán Dopazo
#t2006
#cPLoS Computational Biology
#index3371488
#% 
#!
  
#*Developmental Robustness by Obligate Interaction of Class B Floral Homeotic Genes and Proteins.
#@Thorsten Lenser,Günter Theißen,Peter Dittrich
#t2009
#cPLoS Computational Biology
#index3371478
#% 
#!
  
#*Similar Impact of CD8+ T Cell Responses on Early Virus Dynamics during SIV Infections of Rhesus Macaques and Sooty Mangabeys.
#@Roger D. Kouyos,Shari N. Gordon,Silvija I. Staprans,Guido Silvestri,Roland R. Regoes
#t2010
#cPLoS Computational Biology
#index3371766
#% 
#!
  
#*Transcriptomic Coordination in the Human Metabolic Network Reveals Links between n-3 Fat Intake, Adipose Tissue Gene Expression and Metabolic Health.
#@Melissa J. Morine,Audrey C. Tierney,Ben van Ommen,Hannelore Daniel,Sinead Toomey,Ingrid M. F. Gjelstad,Isobel Claire Gormley,Pablo Pérez-Martinez,Christian A. Drevon,Jose López-Miranda,Helen M. Roche
#t2011
#cPLoS Computational Biology
#index3371275
#% 
#!
  
#*Detailed Simulations of Cell Biology with Smoldyn 2.1.
#@Steven S. Andrews,Nathan J. Addy,Roger Brent,Adam P. Arkin
#t2010
#cPLoS Computational Biology
#index3371619
#% 
#!
  
#*Characterizing Dynamic Changes in the Human Blood Transcriptional Network.
#@Jun Zhu,Yanqing Chen,Amy S. Leonardson,Kai Wang,John R. Lamb,Valur Emilsson,Eric E. Schadt
#t2010
#cPLoS Computational Biology
#index3371499
#% 
#!
  
#*The Emergence and Early Evolution of Biological Carbon-Fixation.
#@Rogier Braakman,Eric Smith
#t2012
#cPLoS Computational Biology
#index3371753
#% 
#!
  
#*Retraction: Measures of Clade Confidence Do Not Correlate with Accuracy of Phylogenetic Trees.
#@Barry G. Hall,Stephen J. Salipante
#t2007
#cPLoS Computational Biology
#index3371304
#% 
#!
  
#*Computational Biology in Argentina.
#@Sebastian Bassi,Virginia González,Gustavo Parisi
#t2007
#cPLoS Computational Biology
#index3371333
#% 
#!
  
#*Systematic Analysis of Pleiotropy in Early Embryogenesis.
#@Lihua Zou,Sira Sriswasdi,Brian C. Ross,Patrycja Vasilyev Missiuro,Jun S. Liu,Hui Ge
#t2008
#cPLoS Computational Biology
#index3371424
#% 
#!
  
#*A Factor Graph Nested Effects Model To Identify Networks from Genetic Perturbations.
#@Charles J. Vaske,Carrie House,Truong Luu,Bryan Frank,Chen-Hsiang Yeang,Norman H. Lee,Joshua M. Stuart
#t2009
#cPLoS Computational Biology
#index3371789
#% 
#!
  
#*Environments that Induce Synthetic Microbial Ecosystems.
#@Niels Klitgord,Daniel Segrè
#t2010
#cPLoS Computational Biology
#index3371293
#% 
#!
  
#*Computation of Steady-State Probability Distributions in Stochastic Models of Cellular Networks.
#@Mark Hallen,Bochong Li,Yu Tanouchi,Cheemeng Tan,Mike West,Lingchong You
#t2011
#cPLoS Computational Biology
#index3371382
#% 
#!
  
#*The Role of Response Elements Organization in Transcription Factor Selectivity: The IFN-β Enhanceosome Example.
#@Yongping Pan,Ruth Nussinov
#t2011
#cPLoS Computational Biology
#index3371473
#% 
#!
  
#*Correction: Bang-Bang Control of Feeding: Role of Hypothalamic and Satiety Signals.
#@B. Silvano Zanutto,John E. R. Staddon
#t2007
#cPLoS Computational Biology
#index3371388
#% 
#!
  
#*Computational Model of Vascular Endothelial Growth Factor Spatial Distribution in Muscle and Pro-Angiogenic Cell Therapy.
#@Feilim Mac Gabhann,James W. Ji,Aleksander S. Popel
#t2006
#cPLoS Computational Biology
#index3371576
#% 
#!
  
#*A Quick Guide to Organizing Computational Biology Projects.
#@William Stafford Noble
#t2009
#cPLoS Computational Biology
#index3371302
#% 
#!
  
#*Computer Simulation of Cellular Patterning Within the Pupal Eye.
#@David E. Larson,Ruth I. Johnson,Maciej Swat,Julia B. Cordero,James A. Glazier,Ross L. Cagan
#t2010
#cPLoS Computational Biology
#index3371633
#% 
#!
  
#*A Compact Representation of Drawing Movements with Sequences of Parabolic Primitives.
#@Felix Polyakov,Rotem Drori,Yoram Ben-Shaul,Moshe Abeles,Tamar Flash
#t2009
#cPLoS Computational Biology
#index3371810
#% 
#!
  
#*Tension and Robustness in Multitasking Cellular Networks.
#@Jeffrey V. Wong,Bochong Li,Lingchong You
#t2012
#cPLoS Computational Biology
#index3371731
#% 
#!
  
#*Mechanochemical Coupling in the Myosin Motor Domain. II. Analysis of Critical Residues.
#@Haibo Yu,Liang Ma,Yang Yang,Qiang Cui
#t2007
#cPLoS Computational Biology
#index3371710
#% 
#!
  
#*Stochastic Theory of Early Viral Infection: Continuous versus Burst Production of Virions.
#@John E. Pearson,Paul Krapivsky,Alan S. Perelson
#t2011
#cPLoS Computational Biology
#index3371916
#% 
#!
  
#*Modeling of Oxygen Transport and Cellular Energetics Explains Observations on In Vivo Cardiac Energy Metabolism.
#@Daniel A. Beard
#t2006
#cPLoS Computational Biology
#index3371957
#% 
#!
  
#*The Brain's Router: A Cortical Network Model of Serial Processing in the Primate Brain.
#@Ariel Zylberberg,Diego Fernández Slezak,Pieter R. Roelfsema,Stanislas Dehaene,Mariano Sigman
#t2010
#cPLoS Computational Biology
#index3372647
#% 
#!
  
#*Probabilistic Interaction Network of Evidence Algorithm and its Application to Complete Labeling of Peak Lists from Protein NMR Spectroscopy.
#@Arash Bahrami,Amir H. Assadi,John L. Markley,Hamid Eghbalnia
#t2009
#cPLoS Computational Biology
#index3372071
#% 
#!
  
#*Canalization of Gene Expression and Domain Shifts in the Blastoderm by Dynamical Attractors.
#@Manu,Svetlana Surkova,Alexander V. Spirov,Vitaly V. Gursky,Hilde Janssens,Ah-Ram Kim,Ovidiu Radulescu,Carlos E. Vanario-Alonso,David H. Sharp,Maria Samsonova,John Reinitz
#t2009
#cPLoS Computational Biology
#index3371893
#% 
#!
  
#*Neutrality and Robustness in Evo-Devo: Emergence of Lateral Inhibition.
#@Andreea Munteanu,Ricard V. Solé
#t2008
#cPLoS Computational Biology
#index3372785
#% 
#!
  
#*Integrative Analysis of Transgenic Alfalfa ( L.) Suggests New Metabolic Control Mechanisms for Monolignol Biosynthesis.
#@Yun Lee,Fang Chen,Lina Gallego-Giraldo,Richard A. Dixon,Eberhard O. Voit
#t2011
#cPLoS Computational Biology
#index3372665
#% 
#!
  
#*Computational Inference of Neural Information Flow Networks.
#@V. Anne Smith,Jing Yu,Tom V. Smulders,Alexander J. Hartemink,Erich D. Jarvis
#t2006
#cPLoS Computational Biology
#index3371972
#% 
#!
  
#*Genome-Scale Modeling of Light-Driven Reductant Partitioning and Carbon Fluxes in Diazotrophic Unicellular Cyanobacterium sp. ATCC 51142.
#@Trang T. Vu,Sergey M. Stolyar,Grigoriy E. Pinchuk,Eric A. Hill,Leo A. Kucek,Roslyn N. Brown,Mary S. Lipton,Andrei Osterman,Jim K. Fredrickson,Allan E. Konopka,Alexander S. Beliaev,Jennifer L. Reed
#t2012
#cPLoS Computational Biology
#index3372099
#% 
#!
  
#*Universally Sloppy Parameter Sensitivities in Systems Biology Models.
#@Ryan N. Gutenkunst,Joshua J. Waterfall,Fergal P. Casey,Kevin S. Brown,Christopher R. Myers,James P. Sethna
#t2007
#cPLoS Computational Biology
#index3372184
#% 
#!
  
#*Teaching Bioinformatics at the Secondary School Level.
#@Fran Lewitter,Philip E. Bourne
#t2011
#cPLoS Computational Biology
#index3372122
#% 
#!
  
#*The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures.
#@Fred P. Davis,Andrej Sali
#t2010
#cPLoS Computational Biology
#index3371908
#% 
#!
  
#*The Mechanism of Ubiquitination in the Cullin-RING E3 Ligase Machinery: Conformational Control of Substrate Orientation.
#@Jin Liu,Ruth Nussinov
#t2009
#cPLoS Computational Biology
#index3372319
#% 
#!
  
#*From Morphology to Neural Information: The Electric Sense of the Skate.
#@Marcelo Camperi,Timothy C. Tricas,Brandon R. Brown
#t2007
#cPLoS Computational Biology
#index3372223
#% 
#!
  
#*Dissecting Early Differentially Expressed Genes in a Mixture of Differentiating Embryonic Stem Cells.
#@Feng Hong,Fang Fang,Xuming He,Xiaoyi Cao,Hiram Chipperfield,Dan Xie,Wing H. Wong,Huck H. Ng,Sheng Zhong
#t2009
#cPLoS Computational Biology
#index3372722
#% 
#!
  
#*Evolution of Networks for Body Plan Patterning; Interplay of Modularity, Robustness and Evolvability.
#@Kirsten H. ten Tusscher,Paulien Hogeweg
#t2011
#cPLoS Computational Biology
#index3372056
#% 
#!
  
#*Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data.
#@Sourav Bandyopadhyay,Ryan M. Kelley,Nevan J. Krogan,Trey Ideker
#t2008
#cPLoS Computational Biology
#index3372768
#% 
#!
  
#*Density Dependence Triggers Runaway Selection of Reduced Senescence.
#@Robert M. Seymour,C. Patrick Doncaster
#t2007
#cPLoS Computational Biology
#index3371937
#% 
#!
  
#*Movement Timing and Invariance Arise from Several Geometries.
#@Daniel Bennequin,Ronit Fuchs,Alain Berthoz,Tamar Flash
#t2009
#cPLoS Computational Biology
#index3371874
#% 
#!
  
#*Encoding of Naturalistic Stimuli by Local Field Potential Spectra in Networks of Excitatory and Inhibitory Neurons.
#@Alberto Mazzoni,Stefano Panzeri,Nikos K. Logothetis,Nicolas Brunel
#t2008
#cPLoS Computational Biology
#index3372287
#% 
#!
  
#*Changes of Mind in an Attractor Network of Decision-Making.
#@Larissa Albantakis,Gustavo Deco
#t2011
#cPLoS Computational Biology
#index3372747
#% 
#!
  
#*Inferring Visuomotor Priors for Sensorimotor Learning.
#@Edward J. A. Turnham,Daniel A. Braun,Daniel M. Wolpert
#t2011
#cPLoS Computational Biology
#index3372170
#% 
#!
  
#*Dependency Map of Proteins in the Small Ribosomal Subunit.
#@Kay Hamacher,Joanna Trylska,James Andrew McCammon
#t2006
#cPLoS Computational Biology
#index3372361
#% 
#!
  
#*A Hybrid Model of Mammalian Cell Cycle Regulation.
#@Rajat Singhania,R. Michael Sramkoski,James W. Jacobberger,John J. Tyson
#t2011
#cPLoS Computational Biology
#index3372382
#% 
#!
  
#*Macro-level Modeling of the Response of Reproduction to Chronic Heat Stress.
#@Patrick D. McMullen,Erin Z. Aprison,Peter B. Winter,Luis A. N. Amaral,Richard I. Morimoto,Ilya Ruvinsky
#t2012
#cPLoS Computational Biology
#index3372563
#% 
#!
  
#*Spatial Stereoresolution for Depth Corrugations May Be Set in Primary Visual Cortex.
#@Fredrik Allenmark,Jenny C. A. Read
#t2011
#cPLoS Computational Biology
#index3372701
#% 
#!
  
#*Evolutionary Triplet Models of Structured RNA.
#@Robert K. Bradley,Ian Holmes
#t2009
#cPLoS Computational Biology
#index3372141
#% 
#!
  
#*Highly Sensitive and Specific Detection of Rare Variants in Mixed Viral Populations from Massively Parallel Sequence Data.
#@Alexander R. Macalalad,Michael C. Zody,Patrick Charlebois,Niall J. Lennon,Ruchi M. Newman,Christine M. Malboeuf,Elizabeth M. Ryan,Christian L. Boutwell,Karen A. Power,Doug E. Brackney,Kendra N. Pesko,Joshua Z. Levin,Gregory D. Ebel,Todd M. Allen,Bruce W. Birren,Matthew R. Henn
#t2012
#cPLoS Computational Biology
#index3372029
#% 
#!
  
#*Corresponding Functional Dynamics across the Hsp90 Chaperone Family: Insights from a Multiscale Analysis of MD Simulations.
#@Giulia Morra,Raffaello Potestio,Cristian Micheletti,Giorgio Colombo
#t2012
#cPLoS Computational Biology
#index3372214
#% 
#!
  
#*Selection upon Genome Architecture: Conservation of Functional Neighborhoods with Changing Genes.
#@Fátima Al-Shahrour,Pablo Minguez,Tomàs Marquès-Bonet,Elodie Gazave,Arcadi Navarro,Joaquín Dopazo
#t2010
#cPLoS Computational Biology
#index3372191
#% 
#!
  
#*Webb Miller and Trey Ideker To Receive Top International Bioinformatics Awards for 2009 from the International Society for Computational Biology.
#@B. J. Morrison McKay,Clare Sansom
#t2009
#cPLoS Computational Biology
#index3372300
#% 
#!
  
#*Retinal Wave Behavior through Activity-Dependent Refractory Periods.
#@Keith B. Godfrey,Nicholas V. Swindale
#t2007
#cPLoS Computational Biology
#index3372683
#% 
#!
  
#*Characterizing the Metabolism of with a Constraint-Based Model.
#@M. Ahsanul Islam,Elizabeth A. Edwards,Radhakrishnan Mahadevan
#t2010
#cPLoS Computational Biology
#index3371837
#% 
#!
  
#*Modeling an Evolutionary Conserved Circadian -Element.
#@Eric R. Paquet,Guillaume Rey,Felix Naef
#t2008
#cPLoS Computational Biology
#index3372831
#% 
#!
  
#*Antigenic Diversity, Transmission Mechanisms, and the Evolution of Pathogens.
#@Alexander Lange,Neil M. Ferguson
#t2009
#cPLoS Computational Biology
#index3372001
#% 
#!
  
#*Molecular Switches at the Synapse Emerge from Receptor and Kinase Traffic.
#@Arnold Hayer,Upinder S. Bhalla
#t2005
#cPLoS Computational Biology
#index3372572
#% 
#!
  
#*Ten Simple Rules for Graduate Students.
#@Jenny Gu,Philip E. Bourne
#t2007
#cPLoS Computational Biology
#index3372065
#% 
#!
  
#*Replication Fork Polarity Gradients Revealed by Megabase-Sized U-Shaped Replication Timing Domains in Human Cell Lines.
#@Antoine Baker,Benjamin Audit,Chun-Long Chen,Benoit Moindrot,Antoine Leleu,Guillaume Guilbaud,Aurélien Rappailles,Cédric Vaillant,Arach Goldar,Fabien Mongelard,Yves D'Aubenton-Carafa,Olivier Hyrien,Claude Thermes,Alain Arneodo
#t2012
#cPLoS Computational Biology
#index3372592
#% 
#!
  
#*Short Conduction Delays Cause Inhibition Rather than Excitation to Favor Synchrony in Hybrid Neuronal Networks of the Entorhinal Cortex.
#@Shuoguo Wang,Lakshmi Chandrasekaran,Fernando R. Fernandez,John A. White,Carmen C. Canavier
#t2012
#cPLoS Computational Biology
#index3372113
#% 
#!
  
#*Predicting Human Nucleosome Occupancy from Primary Sequence.
#@Shobhit Gupta,Jonathan Dennis,Robert E. Thurman,Robert Kingston,John A. Stamatoyannopoulos,William Stafford Noble
#t2008
#cPLoS Computational Biology
#index3372389
#% 
#!
  
#*Parametric Alignment of Genomes.
#@Colin N. Dewey,Peter Huggins,Kevin Woods,Bernd Sturmfels,Lior Pachter
#t2006
#cPLoS Computational Biology
#index3371915
#% 
#!
  
#*Uncovering Interactions in the Frequency Domain.
#@Shuixia Guo,Jianhua Wu,Mingzhou Ding,Jianfeng Feng
#t2008
#cPLoS Computational Biology
#index3372676
#% 
#!
  
#*The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics.
#@Haiyuan Yu,Philip M. Kim,Emmett Sprecher,Valery Trifonov,Mark Gerstein
#t2007
#cPLoS Computational Biology
#index3372203
#% 
#!
  
#*Positive and Negative Design in Stability and Thermal Adaptation of Natural Proteins.
#@Igor N. Berezovsky,Konstantin B. Zeldovich,Eugene I. Shakhnovich
#t2007
#cPLoS Computational Biology
#index3372628
#% 
#!
  
#*Computational Biology in Costa Rica: The Role of a Small Country in the Global Context of Bioinformatics.
#@Edgardo Moreno,Bruno Lomonte,José María Gutiérrez
#t2008
#cPLoS Computational Biology
#index3372050
#% 
#!
  
#*Quantifying Global Tolerance of Biochemical Systems: Design Implications for Moiety-Transfer Cycles.
#@Pedro M. B. M. Coelho,Armindo Salvador,Michael A. Savageau
#t2009
#cPLoS Computational Biology
#index3372711
#% 
#!
  
#*Moving Forward Moving Backward: Directional Sorting of Chemotactic Cells due to Size and Adhesion Differences.
#@Jos Käfer,Paulien Hogeweg,Athanasius F. M. Marée
#t2006
#cPLoS Computational Biology
#index3371965
#% 
#!
  
#*Efficiency, Selectivity, and Robustness of Nucleocytoplasmic Transport.
#@Anton Zilman,Stefano Di Talia,Brian T. Chait,Michael P. Rout,Marcelo O. Magnasco
#t2007
#cPLoS Computational Biology
#index3372462
#% 
#!
  
#*Stroke Rehabilitation Reaches a Threshold.
#@Cheol E. Han,Michael A. Arbib,Nicolas Schweighofer
#t2008
#cPLoS Computational Biology
#index3371950
#% 
#!
  
#*Nano-motion Dynamics are Determined by Surface-Tethered Selectin Mechanokinetics and Bond Formation.
#@Brian J. Schmidt,Jason A. Papin,Michael B. Lawrence
#t2009
#cPLoS Computational Biology
#index3372562
#% 
#!
  
#*Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans.
#@Ivan Iossifov,Raul Rodriguez-Esteban,Ilya Mayzus,Kathleen J. Millen,Andrey Rzhetsky
#t2009
#cPLoS Computational Biology
#index3372225
#% 
#!
  
#*Synchronous Chaos and Broad Band Gamma Rhythm in a Minimal Multi-Layer Model of Primary Visual Cortex.
#@Demian Battaglia,David Hansel
#t2011
#cPLoS Computational Biology
#index3372323
#% 
#!
  
#*A First-Principles Model of Early Evolution: Emergence of Gene Families, Species, and Preferred Protein Folds.
#@Konstantin B. Zeldovich,Peiqiu Chen,Boris E. Shakhnovich,Eugene I. Shakhnovich
#t2007
#cPLoS Computational Biology
#index3372553
#% 
#!
  
#*Spike-Based Reinforcement Learning in Continuous State and Action Space: When Policy Gradient Methods Fail.
#@Eleni Vasilaki,Nicolas Frémaux,Robert Urbanczik,Walter Senn,Wulfram Gerstner
#t2009
#cPLoS Computational Biology
#index3372581
#% 
#!
  
#*Inflammatory Aetiology of Human Myometrial Activation Tested Using Directed Graphs.
#@Andrew M. Bisits,Roger Smith,Sam Mesiano,George Yeo,Kenneth Kwek,David MacIntyre,Eng C. Chan
#t2005
#cPLoS Computational Biology
#index3372402
#% 
#!
  
#*Transat - A Method for Detecting the Conserved Helices of Functional RNA Structures, Including Transient, Pseudo-Knotted and Alternative Structures.
#@Nicholas J. P. Wiebe,Irmtraud M. Meyer
#t2010
#cPLoS Computational Biology
#index3371987
#% 
#!
  
#*Efficient Olfactory Coding in the Pheromone Receptor Neuron of a Moth.
#@Lubomir Kostal,Petr Lánský,Jean-Pierre Rospars
#t2008
#cPLoS Computational Biology
#index3371844
#% 
#!
  
#*Quantitative Test of the Barrier Nucleosome Model for Statistical Positioning of Nucleosomes Up- and Downstream of Transcription Start Sites.
#@Wolfram Möbius,Ulrich Gerland
#t2010
#cPLoS Computational Biology
#index3371930
#% 
#!
  
#*Ultrasensitization: Switch-Like Regulation of Cellular Signaling by Transcriptional Induction.
#@Stefan Legewie,Nils Blüthgen,Reinhold Schäfer,Hanspeter Herzel
#t2005
#cPLoS Computational Biology
#index3372526
#% 
#!
  
#*Noise-Induced Min Phenotypes in .
#@David Fange,Johan Elf
#t2006
#cPLoS Computational Biology
#index3372503
#% 
#!
  
#*Is Protein Folding Sub-Diffusive?
#@Sergei V. Krivov
#t2010
#cPLoS Computational Biology
#index3372412
#% 
#!
  
#*Enzyme Localization Can Drastically Affect Signal Amplification in Signal Transduction Pathways.
#@Siebe B. van Albada,Pieter Rein ten Wolde
#t2007
#cPLoS Computational Biology
#index3372448
#% 
#!
  
#*An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data.
#@Daniel Ramsköld,Eric T. Wang,Christopher B. Burge,Rickard Sandberg
#t2009
#cPLoS Computational Biology
#index3371980
#% 
#!
  
#*Gambling in the Visual Periphery: A Conjoint-Measurement Analysis of Human Ability to Judge Visual Uncertainty.
#@Hang Zhang,Camille Morvan,Laurence T. Maloney
#t2010
#cPLoS Computational Biology
#index3372228
#% 
#!
  
#*Functional Genomics Complements Quantitative Genetics in Identifying Disease-Gene Associations.
#@Yuanfang Guan,Cheryl L. Ackert-Bicknell,Braden Kell,Olga G. Troyanskaya,Matthew A. Hibbs
#t2010
#cPLoS Computational Biology
#index3372504
#% 
#!
  
#*Posttranscriptional Expression Regulation: What Determines Translation Rates?
#@Regina Brockmann,Andreas Beyer,Jürgen J. Heinisch,Thomas Wilhelm
#t2007
#cPLoS Computational Biology
#index3372281
#% 
#!
  
#*Evidence of a Double-Lid Movement in Lipase: Insights from Molecular Dynamics Simulations.
#@Subbulakshmi Latha Cherukuvada,Aswin Sai Narain Seshasayee,Krishnan Raghunathan,Sharmila Anishetty,Pennathur Gautam
#t2005
#cPLoS Computational Biology
#index3372057
#% 
#!
  
#*Finding the "Dark Matter" in Human and Yeast Protein Network Prediction and Modelling.
#@Juan A. G. Ranea,Ian Morilla,Jon G. Lees,Adam James Reid,Corin Yeats,Andrew B. Clegg,Francisca Sánchez-Jiménez,Christine A. Orengo
#t2010
#cPLoS Computational Biology
#index3372552
#% 
#!
  
#*Digital Atlasing and Standardization in the Mouse Brain.
#@Michael Hawrylycz,Richard A. Baldock,Albert Burger,Tsutomu Hashikawa,G. Allan Johnson,Maryann E. Martone,Lydia Ng,Christopher Lau,Stephen D. Larson,Jonathan Nissanov,Luis Puelles,Seth Ruffins,Fons Verbeek,Ilya Zaslavsky,Jyl Boline
#t2011
#cPLoS Computational Biology
#index3372298
#% 
#!
  
#*Drug Off-Target Effects Predicted Using Structural Analysis in the Context of a Metabolic Network Model.
#@Roger L. Chang,Li Xie,Lei Xie,Philip E. Bourne,Bernhard Ø. Palsson
#t2010
#cPLoS Computational Biology
#index3372490
#% 
#!
  
#*Mechanics and Dynamics of X-Chromosome Pairing at X Inactivation.
#@Antonio Scialdone,Mario Nicodemi
#t2008
#cPLoS Computational Biology
#index3372734
#% 
#!
  
#*Identification of Yeast Transcriptional Regulation Networks Using Multivariate Random Forests.
#@Yuanyuan Xiao,Mark R. Segal
#t2009
#cPLoS Computational Biology
#index3372767
#% 
#!
  
#*Detecting Statistically Significant Common Insertion Sites in Retroviral Insertional Mutagenesis Screens.
#@Jeroen de Ridder,Anthony Uren,Jaap Kool,Marcel J. T. Reinders,Lodewyk F. A. Wessels
#t2006
#cPLoS Computational Biology
#index3372284
#% 
#!
  
#*The Free Energy Landscape of Small Molecule Unbinding.
#@Danzhi Huang,Amedeo Caflisch
#t2011
#cPLoS Computational Biology
#index3372610
#% 
#!
  
#*Mechanical Strength of 17 134 Model Proteins and Cysteine Slipknots.
#@Mateusz Sikora,Joanna I. Sulkowska,Marek Cieplak
#t2009
#cPLoS Computational Biology
#index3372739
#% 
#!
  
#*Adaptive, Fast Walking in a Biped Robot under Neuronal Control and Learning.
#@Poramate Manoonpong,Tao Geng,Tomas Kulvicius,Bernd Porr,Florentin Wörgötter
#t2007
#cPLoS Computational Biology
#index3372836
#% 
#!
  
#*Bioinformatics for Whole-Genome Shotgun Sequencing of Microbial Communities.
#@Kevin Chen,Lior Pachter
#t2005
#cPLoS Computational Biology
#index3372242
#% 
#!
  
#*Sparse Gamma Rhythms Arising through Clustering in Adapting Neuronal Networks.
#@Zachary P. Kilpatrick,Bard Ermentrout
#t2011
#cPLoS Computational Biology
#index3372211
#% 
#!
  
#*Identifying Causal Genes and Dysregulated Pathways in Complex Diseases.
#@Yoo-Ah Kim,Stefan Wuchty,Teresa M. Przytycka
#t2011
#cPLoS Computational Biology
#index3372250
#% 
#!
  
#*Simulation of the Undiseased Human Cardiac Ventricular Action Potential: Model Formulation and Experimental Validation.
#@Thomas O'Hara,László Virág,András Varró,Yoram Rudy
#t2011
#cPLoS Computational Biology
#index3372467
#% 
#!
  
#*Automatic Design of Digital Synthetic Gene Circuits.
#@Mario A. Marchisio,Jörg Stelling
#t2011
#cPLoS Computational Biology
#index3372197
#% 
#!
  
#*Fast- or Slow-inactivated State Preference of Na Channel Inhibitors: A Simulation and Experimental Study.
#@Robert Karoly,Nora Lenkey,Andras O. Juhasz,E. Sylvester Vizi,Arpad Mike
#t2010
#cPLoS Computational Biology
#index3371894
#% 
#!
  
#*The Many Faces of Protein-Protein Interactions: A Compendium of Interface Geometry.
#@Wan Kyu Kim,Andreas Henschel,Christof Winter,Michael Schroeder
#t2006
#cPLoS Computational Biology
#index3371859
#% 
#!
  
#*Ten Simple Rules for Getting Ahead as a Computational Biologist in Academia.
#@Philip E. Bourne
#t2011
#cPLoS Computational Biology
#index3372615
#% 
#!
  
#*Systematic Planning of Genome-Scale Experiments in Poorly Studied Species.
#@Yuanfang Guan,Maitreya J. Dunham,Amy A. Caudy,Olga G. Troyanskaya
#t2010
#cPLoS Computational Biology
#index3372169
#% 
#!
  
#*Molecular Dynamics Simulations of Forced Unbending of Integrin αβ.
#@Wei Chen,Jizhong Lou,Jen Hsin,Klaus Schulten,Stephen C. Harvey,Cheng Zhu
#t2011
#cPLoS Computational Biology
#index3372395
#% 
#!
  
#*Cavities and Atomic Packing in Protein Structures and Interfaces.
#@Shrihari Sonavane,Pinak Chakrabarti
#t2008
#cPLoS Computational Biology
#index3372472
#% 
#!
  
#*"Getting Started In...": A Series Not to Miss.
#@Olga G. Troyanskaya
#t2007
#cPLoS Computational Biology
#index3371880
#% 
#!
  
#*Conference Postcards from ISMB 2010.
#@Guilhem Chalancon,Mickey Kosloff,Hatice U. Osmanbeyoglu,Saras Saraswathi
#t2010
#cPLoS Computational Biology
#index3371852
#% 
#!
  
#*Rhythm Generation through Period Concatenation in Rat Somatosensory Cortex.
#@Mark A. Kramer,Anita K. Roopun,Lucy M. Carracedo,Roger D. Traub,Miles A. Whittington,Nancy Kopell
#t2008
#cPLoS Computational Biology
#index3372148
#% 
#!
  
#*Decoding Complex Chemical Mixtures with a Physical Model of a Sensor Array.
#@Julia Tsitron,Addison D. Ault,James R. Broach,Alexandre V. Morozov
#t2011
#cPLoS Computational Biology
#index3371871
#% 
#!
  
#*Functional Alignment of Regulatory Networks: A Study of Temperate Phages.
#@Ala Trusina,Kim Sneppen,Ian B. Dodd,Keith E. Shearwin,J. Barry Egan
#t2005
#cPLoS Computational Biology
#index3372035
#% 
#!
  
#*No Need for a Cognitive Map: Decentralized Memory for Insect Navigation.
#@Holk Cruse,Rüdiger Wehner
#t2011
#cPLoS Computational Biology
#index3372128
#% 
#!
  
#*Power-Law Scaling in the Brain Surface Electric Potential.
#@Kai J. Miller,Larry B. Sorensen,Jeffrey G. Ojemann,Marcel den Nijs
#t2009
#cPLoS Computational Biology
#index3372416
#% 
#!
  
#*Computational Analysis and Prediction of the Binding Motif and Protein Interacting Partners of the Abl SH3 Domain.
#@Tingjun Hou,Ken Chen,William A. McLaughlin,Benzhuo Lu,Wei Wang
#t2006
#cPLoS Computational Biology
#index3372821
#% 
#!
  
#*Association Rate Constants of Ras-Effector Interactions Are Evolutionarily Conserved.
#@Christina Kiel,Dorothee Aydin,Luis Serrano
#t2008
#cPLoS Computational Biology
#index3372646
#% 
#!
  
#*Are There Laws of Genome Evolution?
#@Eugene V. Koonin
#t2011
#cPLoS Computational Biology
#index3372375
#% 
#!
  
#*Imitating Manual Curation of Text-Mined Facts in Biomedicine.
#@Raul Rodriguez-Esteban,Ivan Iossifov,Andrey Rzhetsky
#t2006
#cPLoS Computational Biology
#index3371979
#% 
#!
  
#*Kinetic Rate Constant Prediction Supports the Conformational Selection Mechanism of Protein Binding.
#@Iain H. Moal,Paul A. Bates
#t2012
#cPLoS Computational Biology
#index3372559
#% 
#!
  
#*STDP Allows Fast Rate-Modulated Coding with Poisson-Like Spike Trains.
#@Matthieu Gilson,Timothée Masquelier,Etienne Hugues
#t2011
#cPLoS Computational Biology
#index3372538
#% 
#!
  
#*Meta-Analysis of Circadian Microarray Studies Identifies a Novel Set of Rhythmically Expressed Genes.
#@Kevin P. Keegan,Suraj Pradhan,Ji-Ping Wang,Ravi Allada
#t2007
#cPLoS Computational Biology
#index3372339
#% 
#!
  
#*Identification and Rational Redesign of Peptide Ligands to CRIP1, A Novel Biomarker for Cancers.
#@Jihua Hao,Adrian W. R. Serohijos,Gail Newton,Gina Tassone,Zuncai Wang,Dennis C. Sgroi,Nikolay V. Dokholyan,James P. Basilion
#t2008
#cPLoS Computational Biology
#index3372142
#% 
#!
  
#*On the Inverse Problem of Binocular 3D Motion Perception.
#@Martin Lages,Suzanne Heron
#t2010
#cPLoS Computational Biology
#index3372790
#% 
#!
  
#*Exploring the Contextual Sensitivity of Factors that Determine Cell-to-Cell Variability in Receptor-Mediated Apoptosis.
#@Suzanne Gaudet,Sabrina L. Spencer,William W. Chen,Peter K. Sorger
#t2012
#cPLoS Computational Biology
#index3372527
#% 
#!
  
#*Assessing the Accuracy of Ancestral Protein Reconstruction Methods.
#@Paul D. Williams,David D. Pollock,Benjamin P. Blackburne,Richard A. Goldstein
#t2006
#cPLoS Computational Biology
#index3372092
#% 
#!
  
#*Proteins with Complex Architecture as Potential Targets for Drug Design: A Case Study of s.
#@Bálint Mészáros,Judit Tóth,Beáta G. Vértessy,Zsuzsanna Dosztányi,István Simon
#t2011
#cPLoS Computational Biology
#index3372270
#% 
#!
  
#*Evolution of a Signaling Nexus Constrained by Protein Interfaces and Conformational States.
#@Brenda R. S. Temple,Corbin D. Jones,Alan M. Jones
#t2010
#cPLoS Computational Biology
#index3372007
#% 
#!
  
#*Using Transcription Modules to Identify Expression Clusters Perturbed in Williams-Beuren Syndrome.
#@Charlotte N. Henrichsen,Gábor Csárdi,Marie-Thérèse Zabot,Carmela Fusco,Sven Bergmann,Giuseppe Merla,Alexandre Reymond
#t2011
#cPLoS Computational Biology
#index3372155
#% 
#!
  
#*Quantification of the Relative Importance of CTL, B Cell, NK Cell, and Target Cell Limitation in the Control of Primary SIV-Infection.
#@Marjet Elemans,Rodolphe Thiébaut,Amitinder Kaur,Becca Asquith
#t2011
#cPLoS Computational Biology
#index3372247
#% 
#!
  
#*Perturbation-based Markovian Transmission Model for Probing Allosteric Dynamics of Large Macromolecular Assembling: A Study of GroEL-GroES.
#@Hsiao-Mei Lu,Jie Liang
#t2009
#cPLoS Computational Biology
#index3372846
#% 
#!
  
#*On the Conservation of the Slow Conformational Dynamics within the Amino Acid Kinase Family: NAGK the Paradigm.
#@Enrique Marcos,Ramon Crehuet,Ivet Bahar
#t2010
#cPLoS Computational Biology
#index3371994
#% 
#!
  
#*Unraveling Protein Networks with Power Graph Analysis.
#@Loïc Royer,Matthias Reimann,Bill Andreopoulos,Michael Schroeder
#t2008
#cPLoS Computational Biology
#index3372332
#% 
#!
  
#*Dynamical Modeling of Collective Behavior from Pigeon Flight Data: Flock Cohesion and Dispersion.
#@Graciano Dieck Kattas,Xiaoke Xu,Michael Small
#t2012
#cPLoS Computational Biology
#index3372084
#% 
#!
  
#*Genome Majority Vote Improves Gene Predictions.
#@Michael E. Wall,Sindhu Raghavan,Judith D. Cohn,John Dunbar
#t2011
#cPLoS Computational Biology
#index3372114
#% 
#!
  
#*Insight into the Structure of Amyloid Fibrils from the Analysis of Globular Proteins.
#@Antonio Trovato,Fabrizio Chiti,Amos Maritan,Flavio Seno
#t2006
#cPLoS Computational Biology
#index3372445
#% 
#!
  
#*Biomedical Text Mining and Its Applications.
#@Raul Rodriguez-Esteban
#t2009
#cPLoS Computational Biology
#index3372826
#% 
#!
  
#*The Morphological Identity of Insect Dendrites.
#@Hermann Cuntz,Friedrich Forstner,Jürgen Haag,Alexander Borst
#t2008
#cPLoS Computational Biology
#index3372800
#% 
#!
  
#*Distributed Dynamical Computation in Neural Circuits with Propagating Coherent Activity Patterns.
#@Pulin Gong,Cees van Leeuwen
#t2009
#cPLoS Computational Biology
#index3372368
#% 
#!
  
#*Evolutionary Epidemiology of Drug-Resistance in Space.
#@Florence Débarre,Thomas Lenormand,Sylvain Gandon
#t2009
#cPLoS Computational Biology
#index3372457
#% 
#!
  
#*Optimizing Provider Recruitment for Influenza Surveillance Networks.
#@Samuel V. Scarpino,Nedialko B. Dimitrov,Lauren Ancel Meyers
#t2012
#cPLoS Computational Biology
#index3372748
#% 
#!
  
#*Emergence of Recombinant Forms of HIV: Dynamics and Scaling.
#@Gajendra W. Suryavanshi,Narendra M. Dixit
#t2007
#cPLoS Computational Biology
#index3372729
#% 
#!
  
#*Cortical Gamma Rhythms Modulate NMDAR-Mediated Spike Timing Dependent Plasticity in a Biophysical Model.
#@Shane Lee,Kamal Sen,Nancy Kopell
#t2009
#cPLoS Computational Biology
#index3372808
#% 
#!
  
#*Computationally Derived Points of Fragility of a Human Cascade Are Consistent with Current Therapeutic Strategies.
#@Deyan Luan,Michael Zai,Jeffrey D. Varner
#t2007
#cPLoS Computational Biology
#index3372600
#% 
#!
  
#*Getting Started in Text Mining.
#@K. Bretonnel Cohen,Lawrence Hunter
#t2008
#cPLoS Computational Biology
#index3372518
#% 
#!
  
#*Spatio-Temporal Dynamics of Yeast Mitochondrial Biogenesis: Transcriptional and Post-Transcriptional mRNA Oscillatory Modules.
#@Gaëlle Lelandais,Yann Saint-Georges,Colette Geneix,Liza Al-Shikhley,Geneviève Dujardin,Claude Jacq
#t2009
#cPLoS Computational Biology
#index3372320
#% 
#!
  
#*An Atlas of the Thioredoxin Fold Class Reveals the Complexity of Function-Enabling Adaptations.
#@Holly J. Atkinson,Patricia C. Babbitt
#t2009
#cPLoS Computational Biology
#index3372290
#% 
#!
  
#*Sizing Up Allometric Scaling Theory.
#@Van M. Savage,Eric J. Deeds,Walter Fontana
#t2008
#cPLoS Computational Biology
#index3372261
#% 
#!
  
#*Theoretical Model for Cellular Shapes Driven by Protrusive and Adhesive Forces.
#@Doron Kabaso,Roie Shlomovitz,Kathrin Schloen,Theresia Stradal,Nir S. Gov
#t2011
#cPLoS Computational Biology
#index3372434
#% 
#!
  
#*Mapping the Environmental Fitness Landscape of a Synthetic Gene Circuit.
#@Dmitry Nevozhay,Rhys M. Adams,Elizabeth Van Itallie,Matthew R. Bennett,Gábor Balázsi
#t2012
#cPLoS Computational Biology
#index3372362
#% 
#!
  
#*Calcium Signals Driven by Single Channel Noise.
#@Alexander Skupin,Helmut Kettenmann,Martin Falcke
#t2010
#cPLoS Computational Biology
#index3372267
#% 
#!
  
#*Evolution under Fluctuating Environments Explains Observed Robustness in Metabolic Networks.
#@Orkun S. Soyer,Thomas Pfeiffer
#t2010
#cPLoS Computational Biology
#index3372417
#% 
#!
  
#*Emergent Behaviors from a Cellular Automaton Model for Invasive Tumor Growth in Heterogeneous Microenvironments.
#@Yang Jiao,Salvatore Torquato
#t2011
#cPLoS Computational Biology
#index3372078
#% 
#!
  
#*Structural Modeling of Protein Interactions by Analogy: Application to PSD-95.
#@Dmitry Korkin,Fred P. Davis,Frank Alber,Tinh Luong,Min-Yi Shen,Vladan Lucic,Mary B. Kennedy,Andrej Sali
#t2006
#cPLoS Computational Biology
#index3372471
#% 
#!
  
#*Optimal Noise Filtering in the Chemotactic Response of .
#@Burton W. Andrews,Tau-Mu Yi,Pablo A. Iglesias
#t2006
#cPLoS Computational Biology
#index3372468
#% 
#!
  
#*The Effects of NR2 Subunit-Dependent NMDA Receptor Kinetics on Synaptic Transmission and CaMKII Activation.
#@David M. Santucci,Sridhar Raghavachari
#t2008
#cPLoS Computational Biology
#index3372410
#% 
#!
  
#*Combining Fungal Biopesticides and Insecticide-Treated Bednets to Enhance Malaria Control.
#@Penelope A. Hancock
#t2009
#cPLoS Computational Biology
#index3372014
#% 
#!
  
#*Taking the Lag out of Jet Lag through Model-Based Schedule Design.
#@Dennis A. Dean II,Daniel B. Forger,Elizabeth B. Klerman
#t2009
#cPLoS Computational Biology
#index3372712
#% 
#!
  
#*Eurekometrics: Analyzing the Nature of Discovery.
#@Samuel Arbesman,Nicholas A. Christakis
#t2011
#cPLoS Computational Biology
#index3371861
#% 
#!
  
#*Modeling Latently Infected Cell Activation: Viral and Latent Reservoir Persistence, and Viral Blips in HIV-infected Patients on Potent Therapy.
#@Libin Rong,Alan S. Perelson
#t2009
#cPLoS Computational Biology
#index3372686
#% 
#!
  
#*Grasping Objects with Environmentally Induced Position Uncertainty.
#@Vassilios N. Christopoulos,Paul R. Schrater
#t2009
#cPLoS Computational Biology
#index3372650
#% 
#!
  
#*Correction: In Search of the Biological Significance of Modular Structures in Protein Networks.
#@Zhi Wang,Jianzhi Zhang
#t2007
#cPLoS Computational Biology
#index3371900
#% 
#!
  
#*2010 ISCB Overton Prize Awarded to Steven E. Brenner.
#@B. J. Morrison McKay,Clare Sansom
#t2010
#cPLoS Computational Biology
#index3372730
#% 
#!
  
#*Paradoxical Evidence Integration in Rapid Decision Processes.
#@Johannes Rüter,Nicolas Marcille,Henning Sprekeler,Wulfram Gerstner,Michael H. Herzog
#t2012
#cPLoS Computational Biology
#index3372390
#% 
#!
  
#*Use It and Improve It or Lose It: Interactions between Arm Function and Use in Humans Post-stroke.
#@Yukikazu Hidaka,Cheol E. Han,Steven L. Wolf,Carolee J. Winstein,Nicolas Schweighofer
#t2012
#cPLoS Computational Biology
#index3372220
#% 
#!
  
#*Induced Effects of Sodium Ions on Dopaminergic G-Protein Coupled Receptors.
#@Jana Selent,Ferran Sanz,Manuel Pastor,Gianni De Fabritiis
#t2010
#cPLoS Computational Biology
#index3372256
#% 
#!
  
#*A First Look at ARFome: Dual-Coding Genes in Mammalian Genomes.
#@Wen-Yu Chung,Samir Wadhawan,Radek Szklarczyk,Sergei L. Kosakovsky Pond,Anton Nekrutenko
#t2007
#cPLoS Computational Biology
#index3372021
#% 
#!
  
#*Determinants of Heterogeneity, Excitation and Conduction in the Sinoatrial Node: A Model Study.
#@Ronit V. Oren,Colleen E. Clancy
#t2010
#cPLoS Computational Biology
#index3372233
#% 
#!
  
#*From Inverse Problems in Mathematical Physiology to Quantitative Differential Diagnoses.
#@Sven Zenker,Jonathan Rubin,Gilles Clermont
#t2007
#cPLoS Computational Biology
#index3372580
#% 
#!
  
#*A Systems Biology Approach Identifies Molecular Networks Defining Skeletal Muscle Abnormalities in Chronic Obstructive Pulmonary Disease.
#@Nil Turan,Susana Kalko,Anna Stincone,Kim Clarke,Ayesha Sabah,Katherine Howlett,S. John Curnow,Diego A. Rodriguez,Marta Cascante,Laura O'Neill,Stuart Egginton,Josep Roca,Francesco Falciani
#t2011
#cPLoS Computational Biology
#index3372757
#% 
#!
  
#*Adaptation to Different Human Populations by HIV-1 Revealed by Codon-Based Analyses.
#@Sergei L. Kosakovsky Pond,Simon D. W. Frost,Zehava Grossman,Michael B. Gravenor,Douglas D. Richman,Andrew J. Leigh Brown
#t2006
#cPLoS Computational Biology
#index3372657
#% 
#!
  
#*Codon Usage Domains over Bacterial Chromosomes.
#@Marc Bailly-Bechet,Antoine Danchin,Mudassar Iqbal,Matteo Marsili,Massimo Vergassola
#t2006
#cPLoS Computational Biology
#index3371901
#% 
#!
  
#*Spatial Guilds in the Serengeti Food Web Revealed by a Bayesian Group Model.
#@Edward B. Baskerville,Andy P. Dobson,Trevor Bedford,Stefano Allesina,T. Michael Anderson,Mercedes Pascual
#t2011
#cPLoS Computational Biology
#index3372822
#% 
#!
  
#*A Hierarchy of Time-Scales and the Brain.
#@Stefan J. Kiebel,Jean Daunizeau,Karl J. Friston
#t2008
#cPLoS Computational Biology
#index3372465
#% 
#!
  
#*Identifying Drug Effects via Pathway Alterations using an Integer Linear Programming Optimization Formulation on Phosphoproteomic Data.
#@Alexander Mitsos,Ioannis N. Melas,Paraskeuas Siminelakis,Aikaterini D. Chairakaki,Julio Saez-Rodriguez,Leonidas G. Alexopoulos
#t2009
#cPLoS Computational Biology
#index3372675
#% 
#!
  
#*Charge as a Selection Criterion for Translocation through the Nuclear Pore Complex.
#@Lucy J. Colwell,Michael P. Brenner,Katharina Ribbeck
#t2010
#cPLoS Computational Biology
#index3371943
#% 
#!
  
#*Constraint-Based Model of MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation.
#@Grigoriy E. Pinchuk,Eric A. Hill,Oleg V. Geydebrekht,Jessica De Ingeniis,Xiaolin Zhang,Andrei Osterman,James H. Scott,Samantha B. Reed,Margaret F. Romine,Allan E. Konopka,Alexander S. Beliaev,Jim K. Fredrickson,Jennifer L. Reed
#t2010
#cPLoS Computational Biology
#index3372423
#% 
#!
  
#*A Computational Framework for Influenza Antigenic Cartography.
#@Zhipeng Cai,Tong Zhang,Xiu-Feng Wan
#t2010
#cPLoS Computational Biology
#index3372156
#% 
#!
  
#*NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail.
#@Padraig Gleeson,Sharon Crook,Robert C. Cannon,Michael L. Hines,Guy O. Billings,Matteo Farinella,Thomas M. Morse,Andrew P. Davison,Subhasis Ray,Upinder S. Bhalla,Simon R. Barnes,Yoana D. Dimitrova,Angus Silver
#t2010
#cPLoS Computational Biology
#index3372183
#% 
#!
  
#*In Search of the Biological Significance of Modular Structures in Protein Networks.
#@Zhi Wang,Jianzhi Zhang
#t2007
#cPLoS Computational Biology
#index3372451
#% 
#!
  
#*Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays.
#@Rameen Beroukhim,Ming Lin,Yuhyun Park,Ke Hao,Xiaojun Zhao,Levi A. Garraway,Edward A. Fox,Ephraim P. Hochberg,Ingo K. Mellinghoff,Matthias D. Hofer,Aurelien Descazeaud,Mark A. Rubin,Matthew Meyerson,Wing Hung Wong,William R. Sellers,Cheng Li
#t2006
#cPLoS Computational Biology
#index3372079
#% 
#!
  
#*The Origins of Time-Delay in Template Biopolymerization Processes.
#@Luis Mier-y-Teran-Romero,Mary Silber,Vassily Hatzimanikatis
#t2010
#cPLoS Computational Biology
#index3372721
#% 
#!
  
#*Network Inference Algorithms Elucidate Nrf2 Regulation of Mouse Lung Oxidative Stress.
#@Ronald C. Taylor,George Acquaah-Mensah,Mudita Singhal,Deepti Malhotra,Shyam Biswal
#t2008
#cPLoS Computational Biology
#index3372523
#% 
#!
  
#*Attention Increases the Temporal Precision of Conscious Perception: Verifying the Neural-ST Model.
#@Srivas Chennu,Patrick Craston,Bradley P. Wyble,Howard Bowman
#t2009
#cPLoS Computational Biology
#index3371870
#% 
#!
  
#*Iterative Reconstruction of Transcriptional Regulatory Networks: An Algorithmic Approach.
#@Christian L. Barrett,Bernhard O. Palsson
#t2006
#cPLoS Computational Biology
#index3372693
#% 
#!
  
#*Local Gene Regulation Details a Recognition Code within the LacI Transcriptional Factor Family.
#@Francisco M. Camas,Eric J. Alm,Juan F. Poyatos
#t2010
#cPLoS Computational Biology
#index3372317
#% 
#!
  
#*Genome-Wide Modeling of Transcription Preinitiation Complex Disassembly Mechanisms using ChIP-chip Data.
#@Eric Samorodnitsky,B. Franklin Pugh
#t2010
#cPLoS Computational Biology
#index3372507
#% 
#!
  
#*Connectivity in the Yeast Cell Cycle Transcription Network: Inferences from Neural Networks.
#@Christopher E. Hart,Eric Mjolsness,Barbara J. Wold
#t2006
#cPLoS Computational Biology
#index3372482
#% 
#!
  
#*Emergent Synchronous Bursting of Oxytocin Neuronal Network.
#@Enrico Rossoni,Jianfeng Feng,Brunello Tirozzi,David Brown,Gareth Leng,Françoise Moos
#t2008
#cPLoS Computational Biology
#index3372121
#% 
#!
  
#*Synchronization-Induced Rhythmicity of Circadian Oscillators in the Suprachiasmatic Nucleus.
#@Samuel Bernard,Didier Gonze,Branka Cajavec,Hanspeter Herzel,Achim Kramer
#t2007
#cPLoS Computational Biology
#index3372049
#% 
#!
  
#*Designing a Nanotube Using Naturally Occurring Protein Building Blocks.
#@Chung-Jung Tsai,Jie Zheng,Ruth Nussinov
#t2006
#cPLoS Computational Biology
#index3372811
#% 
#!
  
#*Getting Started in Gene Orthology and Functional Analysis.
#@Gang Fang,Nitin Bhardwaj,Rebecca Robilotto,Mark B. Gerstein
#t2010
#cPLoS Computational Biology
#index3372549
#% 
#!
  
#*Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures.
#@Steve Hoffmann,Christian Otto,Stefan Kurtz,Cynthia M. Sharma,Philipp Khaitovich,Jörg Vogel,Peter F. Stadler,Jörg Hackermüller
#t2009
#cPLoS Computational Biology
#index3372786
#% 
#!
  
#*The Effect of Ongoing Exposure Dynamics in Dose Response Relationships.
#@Josep M. Pujol,Joseph E. Eisenberg,Charles N. Haas,James S. Koopman
#t2009
#cPLoS Computational Biology
#index3372040
#% 
#!
  
#*Parallel Computational Subunits in Dentate Granule Cells Generate Multiple Place Fields.
#@Balázs Ujfalussy,Tamás Kiss,Péter Érdi
#t2009
#cPLoS Computational Biology
#index3371909
#% 
#!
  
#*Entropic Stabilization of Proteins and Its Proteomic Consequences.
#@Igor N. Berezovsky,William W. Chen,Paul J. Choi,Eugene I. Shakhnovich
#t2005
#cPLoS Computational Biology
#index3372766
#% 
#!
  
#*Bistability versus Bimodal Distributions in Gene Regulatory Processes from Population Balance.
#@Che-Chi Shu,Anushree Chatterjee,Gary Dunny,Wei-Shou Hu,Doraiswami Ramkrishna
#t2011
#cPLoS Computational Biology
#index3372326
#% 
#!
  
#*Patterns of Mesenchymal Condensation in a Multiscale, Discrete Stochastic Model.
#@Scott Christley,Mark S. Alber,Stuart A. Newman
#t2007
#cPLoS Computational Biology
#index3372501
#% 
#!
  
#*Emergent Patterns of Social Affiliation in Primates, a Model.
#@Ivan Puga-Gonzalez,Hanno Hildenbrandt,Charlotte K. Hemelrijk
#t2009
#cPLoS Computational Biology
#index3372305
#% 
#!
  
#*Getting Started in Probabilistic Graphical Models.
#@Edoardo M. Airoldi
#t2007
#cPLoS Computational Biology
#index3372028
#% 
#!
  
#*Chemotaxis Receptor Complexes: From Signaling to Assembly.
#@Robert G. Endres,Joseph J. Falke,Ned S. Wingreen
#t2007
#cPLoS Computational Biology
#index3372064
#% 
#!
  
#*Inferring Epidemic Contact Structure from Phylogenetic Trees.
#@Gabriel E. Leventhal,Roger D. Kouyos,Tanja Stadler,Viktor von Wyl,Sabine Yerly,Jürg Böni,Cristina Cellerai,Thomas Klimkait,Huldrych F. Günthard,Sebastian Bonhoeffer
#t2012
#cPLoS Computational Biology
#index3371891
#% 
#!
  
#*Psychophysical Tests of the Hypothesis of a Bottom-Up Saliency Map in Primary Visual Cortex.
#@Zhaoping Li,Keith A. May
#t2007
#cPLoS Computational Biology
#index3371881
#% 
#!
  
#*A Bipolar Clamp Mechanism for Activation of Jak-Family Protein Tyrosine Kinases.
#@Dipak Barua,James R. Faeder,Jason M. Haugh
#t2009
#cPLoS Computational Biology
#index3371890
#% 
#!
  
#*Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks.
#@Karine Audouze,Agnieszka Sierakowska Juncker,Francisco S. Roque,Konrad Krysiak-Baltyn,Nils Weinhold,Olivier Taboureau,Thomas Skøt Jensen,Søren Brunak
#t2010
#cPLoS Computational Biology
#index3372643
#% 
#!
  
#*Maximum-Likelihood Model Averaging To Profile Clustering of Site Types across Discrete Linear Sequences.
#@Zhang Zhang,Jeffrey P. Townsend
#t2009
#cPLoS Computational Biology
#index3372637
#% 
#!
  
#*Circadian KaiC Phosphorylation: A Multi-Layer Network.
#@Congxin Li,Xiaofang Chen,Pengye Wang,Weichi Wang
#t2009
#cPLoS Computational Biology
#index3371947
#% 
#!
  
#*A Model for Genetic and Epigenetic Regulatory Networks Identifies Rare Pathways for Transcription Factor Induced Pluripotency.
#@Maxim N. Artyomov,Alexander Meissner,Arup K. Chakraborty
#t2010
#cPLoS Computational Biology
#index3372573
#% 
#!
  
#*Structural Insights into the Inhibition of Cytosolic 5′-Nucleotidase II (cN-II) by Ribonucleoside 5′-Monophosphate Analogues.
#@Franck Gallier,Perrine Lallemand,Maïa Meurillon,Lars P. Jordheim,Charles Dumontet,Christian Périgaud,Corinne Lionne,Suzanne Peyrottes,Laurent Chaloin
#t2011
#cPLoS Computational Biology
#index3371927
#% 
#!
  
#*Dissimilatory Metabolism of Nitrogen Oxides in Bacteria: Comparative Reconstruction of Transcriptional Networks.
#@Dmitry A. Rodionov,Inna Dubchak,Adam P. Arkin,Eric J. Alm,Mikhail S. Gelfand
#t2005
#cPLoS Computational Biology
#index3372003
#% 
#!
  
#*Abnormal Cortical Networks in Mild Cognitive Impairment and Alzheimer's Disease.
#@Zhijun Yao,Yuanchao Zhang,Lei Lin,Yuan Zhou,Cunlu Xu,Tianzi Jiang
#t2010
#cPLoS Computational Biology
#index3372699
#% 
#!
  
#*Topic Pages: Meets Wikipedia.
#@Shoshana J. Wodak,Daniel Mietchen,Andrew M. Collings,Robert B. Russell,Philip E. Bourne
#t2012
#cPLoS Computational Biology
#index3372376
#% 
#!
  
#*Biomedical Cloud Computing With Amazon Web Services.
#@Vincent A. Fusaro,Prasad Patil,Erik Gafni,Dennis P. Wall,Peter J. Tonellato
#t2011
#cPLoS Computational Biology
#index3372535
#% 
#!
  
#*A Structured Model of Video Reproduces Primary Visual Cortical Organisation.
#@Pietro Berkes,Richard E. Turner,Maneesh Sahani
#t2009
#cPLoS Computational Biology
#index3371843
#% 
#!
  
#*Stochastic Noise and Synchronisation during Aggregation Make cAMP Oscillations Robust.
#@Jongrae Kim,Pat Heslop-Harrison,Ian Postlethwaite,Declan G. Bates
#t2007
#cPLoS Computational Biology
#index3372656
#% 
#!
  
#*Natural Image Coding in V1: How Much Use Is Orientation Selectivity?
#@Jan Eichhorn,Fabian H. Sinz,Matthias Bethge
#t2009
#cPLoS Computational Biology
#index3372694
#% 
#!
  
#*Estimating the Location and Spatial Extent of a Covert Anthrax Release.
#@Judith Legrand,Joseph R. Egan,Ian M. Hall,Simon Cauchemez,Steve Leach,Neil M. Ferguson
#t2009
#cPLoS Computational Biology
#index3372312
#% 
#!
  
#*Bayesian Phylogeography Finds Its Roots.
#@Philippe Lemey,Andrew Rambaut,Alexei J. Drummond,Marc A. Suchard
#t2009
#cPLoS Computational Biology
#index3371993
#% 
#!
  
#*Top-Down Analysis of Temporal Hierarchy in Biochemical Reaction Networks.
#@Neema Jamshidi,Bernhard Ø. Palsson
#t2008
#cPLoS Computational Biology
#index3372733
#% 
#!
  
#*Sensing and Integration of Erk and PI3K Signals by Myc.
#@Tae Lee,Guang Yao,Joseph Nevins,Lingchong You
#t2008
#cPLoS Computational Biology
#index3371936
#% 
#!
  
#*Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data.
#@Can Alkan,Mario Ventura,Nicoletta Archidiacono,Mariano Rocchi,Süleyman Cenk Sahinalp,Evan E. Eichler
#t2007
#cPLoS Computational Biology
#index3372524
#% 
#!
  
#*The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment.
#@Stephen F. Altschul,John C. Wootton,Elena Zaslavsky,Yi-Kuo Yu
#t2010
#cPLoS Computational Biology
#index3372276
#% 
#!
  
#*Learning from Sensory and Reward Prediction Errors during Motor Adaptation.
#@Jun Izawa,Reza Shadmehr
#t2011
#cPLoS Computational Biology
#index3372630
#% 
#!
  
#*Direct Inference of SNP Heterozygosity Rates and Resolution of LOH Detection.
#@Xiaohong Li,Steven G. Self,Patricia C. Galipeau,Thomas G. Paulson,Brian J. Reid
#t2007
#cPLoS Computational Biology
#index3372068
#% 
#!
  
#*Distributions of Transposable Elements Reveal Hazardous Zones in Mammalian Introns.
#@Ying Zhang,Mark T. Romanish,Dixie L. Mager
#t2011
#cPLoS Computational Biology
#index3372396
#% 
#!
  
#*Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities.
#@Marcel E. Dinger,Ken C. Pang,Tim R. Mercer,John S. Mattick
#t2008
#cPLoS Computational Biology
#index3372789
#% 
#!
  
#*Practical Strategies for Discovering Regulatory DNA Sequence Motifs.
#@Kenzie D. MacIsaac,Ernest Fraenkel
#t2006
#cPLoS Computational Biology
#index3372515
#% 
#!
  
#*Conflicting Biomedical Assumptions for Mathematical Modeling: The Case of Cancer Metastasis.
#@Anna Divoli,Eneida A. Mendonça,James A. Evans,Andrey Rzhetsky
#t2011
#cPLoS Computational Biology
#index3371869
#% 
#!
  
#*Second Order Dimensionality Reduction Using Minimum and Maximum Mutual Information Models.
#@Jeffrey D. Fitzgerald,Ryan J. Rowekamp,Lawrence C. Sincich,Tatyana O. Sharpee
#t2011
#cPLoS Computational Biology
#index3372440
#% 
#!
  
#*Malleable Machines in Transcription Regulation: The Mediator Complex.
#@Ágnes Tóth-Petróczy,Christopher J. Oldfield,István Simon,Yuichiro Takagi,A. Keith Dunker,Vladimir N. Uversky,Mónika Fuxreiter
#t2008
#cPLoS Computational Biology
#index3372289
#% 
#!
  
#*Bacteria Modulate the CD8+ T Cell Epitope Repertoire of Host Cytosol-Exposed Proteins to Manipulate the Host Immune Response.
#@Yaakov Maman,Ran Nir-Paz,Yoram Louzoun
#t2011
#cPLoS Computational Biology
#index3372845
#% 
#!
  
#*Local Function Conservation in Sequence and Structure Space.
#@Nils Weinhold,Oliver Sander,Francisco S. Domingues,Thomas Lengauer,Ingolf Sommer
#t2008
#cPLoS Computational Biology
#index3372212
#% 
#!
  
#*Computational Complementation: A Modelling Approach to Study Signalling Mechanisms during Legume Autoregulation of Nodulation.
#@Liqi Han,Jim Hanan,Peter M. Gresshoff
#t2010
#cPLoS Computational Biology
#index3372509
#% 
#!
  
#*Analyzing ChIP-chip Data Using Bioconductor.
#@Joern Toedling,Wolfgang Huber
#t2008
#cPLoS Computational Biology
#index3372023
#% 
#!
  
#*A Reaction-Diffusion Model of ROS-Induced ROS Release in a Mitochondrial Network.
#@Lufang Zhou,Miguel Antonio Aon,Tabish Almas,Sonia Cortassa,Raimond L. Winslow,Brian O'Rourke
#t2010
#cPLoS Computational Biology
#index3372663
#% 
#!
  
#*Introduction to Computational Proteomics.
#@Jacques Colinge,Keiryn L. Bennett
#t2007
#cPLoS Computational Biology
#index3372192
#% 
#!
  
#*Network Archaeology: Uncovering Ancient Networks from Present-Day Interactions.
#@Saket Navlakha,Carl Kingsford
#t2011
#cPLoS Computational Biology
#index3372058
#% 
#!
  
#*Role of Mechanical Factors in the Morphology of the Primate Cerebral Cortex.
#@Claus C. Hilgetag,Helen Barbas
#t2006
#cPLoS Computational Biology
#index3372059
#% 
#!
  
#*Stability Properties of Underdominance in Finite Subdivided Populations.
#@Philipp M. Altrock,Arne Traulsen,Floyd A. Reed
#t2011
#cPLoS Computational Biology
#index3372125
#% 
#!
  
#*How Protein Stability and New Functions Trade Off.
#@Nobuhiko Tokuriki,Francois Stricher,Luis Serrano,Dan S. Tawfik
#t2008
#cPLoS Computational Biology
#index3371975
#% 
#!
  
#*Novel Peptide-Mediated Interactions Derived from High-Resolution 3-Dimensional Structures.
#@Amelie Stein,Patrick Aloy
#t2010
#cPLoS Computational Biology
#index3372177
#% 
#!
  
#*Plant Classification from Bat-Like Echolocation Signals.
#@Yossi Yovel,Matthias O. Franz,Peter Stilz,Hans-Ulrich Schnitzler
#t2008
#cPLoS Computational Biology
#index3372713
#% 
#!
  
#*BioLINK Special Interest Group Session on the Future of Scientific Publishing.
#@Scott Markel
#t2009
#cPLoS Computational Biology
#index3372431
#% 
#!
  
#*Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests.
#@Mile Sikic,Sanja Tomic,Kristian Vlahovicek
#t2009
#cPLoS Computational Biology
#index3372206
#% 
#!
  
#*Senescent Cells in Growing Tumors: Population Dynamics and Cancer Stem Cells.
#@Caterina A. M. La Porta,Stefano Zapperi,James P. Sethna
#t2012
#cPLoS Computational Biology
#index3372560
#% 
#!
  
#*The Distinct Conformational Dynamics of K-Ras and H-Ras A59G.
#@Suryani Lukman,Barry J. Grant,Alemayehu A. Gorfe,Guy H. Grant,James Andrew McCammon
#t2010
#cPLoS Computational Biology
#index3372255
#% 
#!
  
#*Questioning the Ubiquity of Neofunctionalization.
#@Todd A. Gibson,Debra Goldberg
#t2009
#cPLoS Computational Biology
#index3371926
#% 
#!
  
#*Cell Surface Receptors for Signal Transduction and Ligand Transport: A Design Principles Study.
#@Harish Shankaran,Haluk Resat,H. Steven Wiley
#t2007
#cPLoS Computational Biology
#index3371842
#% 
#!
  
#*A Granger Causality Measure for Point Process Models of Ensemble Neural Spiking Activity.
#@Sanggyun Kim,David Putrino,Soumya Ghosh,Emery N. Brown
#t2011
#cPLoS Computational Biology
#index3372692
#% 
#!
  
#*microRNA Target Predictions across Seven Species and Comparison to Mammalian Targets.
#@Dominic Grün,Yi-Lu Wang,David Langenberger,Kristin C. Gunsalus,Nikolaus Rajewsky
#t2005
#cPLoS Computational Biology
#index3372601
#% 
#!
  
#*Estimation of Parent Specific DNA Copy Number in Tumors using High-Density Genotyping Arrays.
#@Hao Chen,Haipeng Xing,Nancy R. Zhang
#t2011
#cPLoS Computational Biology
#index3371946
#% 
#!
  
#*Energetic Selection of Topology in Ferredoxins.
#@J. Dongun Kim,Agustina Rodriguez-Granillo,David A. Case,Vikas Nanda,Paul G. Falkowski
#t2012
#cPLoS Computational Biology
#index3372496
#% 
#!
  
#*Deconvolution of the Cellular Force-Generating Subsystems that Govern Cytokinesis Furrow Ingression.
#@Christopher C. Poirier,Win Pin Ng,Douglas N. Robinson,Pablo A. Iglesias
#t2012
#cPLoS Computational Biology
#index3371966
#% 
#!
  
#*Compensation for Changing Motor Uncertainty.
#@Todd E. Hudson,Hadley Tassinari,Michael S. Landy
#t2010
#cPLoS Computational Biology
#index3372340
#% 
#!
  
#*Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation.
#@Marco Pedicini,Fredrik Barrenäs,Trevor Clancy,Filippo Castiglione,Eivind Hovig,Kartiek Kanduri,Daniele Santoni,Mikael Benson
#t2010
#cPLoS Computational Biology
#index3372032
#% 
#!
  
#*Parameter Estimation and Model Selection in Computational Biology.
#@Gabriele Lillacci,Mustafa Khammash
#t2010
#cPLoS Computational Biology
#index3372594
#% 
#!
  
#*Inferring Stabilizing Mutations from Protein Phylogenies: Application to Influenza Hemagglutinin.
#@Jesse D. Bloom,Matthew J. Glassman
#t2009
#cPLoS Computational Biology
#index3372658
#% 
#!
  
#*A New Approach for Determining Phase Response Curves Reveals that Purkinje Cells Can Act as Perfect Integrators.
#@Elena Phoka,Hermann Cuntz,Arnd Roth,Michael Häusser
#t2010
#cPLoS Computational Biology
#index3372487
#% 
#!
  
#*Development of Genomic Sciences in Mexico: A Good Start and a Long Way to Go.
#@Rafael Palacios,Julio Collado-Vides
#t2007
#cPLoS Computational Biology
#index3371984
#% 
#!
  
#*Can Molecular Motors Drive Distance Measurements in Injured Neurons?
#@Naaman Kam,Yitzhak Pilpel,Mike Fainzilber
#t2009
#cPLoS Computational Biology
#index3372147
#% 
#!
  
#*Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome.
#@Guillaume Guilbaud,Aurélien Rappailles,Antoine Baker,Chun-Long Chen,Alain Arneodo,Arach Goldar,Yves D'Aubenton-Carafa,Claude Thermes,Benjamin Audit,Olivier Hyrien
#t2011
#cPLoS Computational Biology
#index3371833
#% 
#!
  
#*The Role of Incoherent MicroRNA-Mediated Feedforward Loops in Noise Buffering.
#@Matteo Osella,Carla Bosia,Davide Corà,Michele Caselle
#t2011
#cPLoS Computational Biology
#index3372795
#% 
#!
  
#*Evolutionary Accessibility of Mutational Pathways.
#@Jasper Franke,Alexander Klözer,J. Arjan G. M. de Visser,Joachim Krug
#t2011
#cPLoS Computational Biology
#index3372002
#% 
#!
  
#*Autocatalytic Loop, Amplification and Diffusion: A Mathematical and Computational Model of Cell Polarization in Neural Chemotaxis.
#@Paola Causin,Giuseppe Facchetti
#t2009
#cPLoS Computational Biology
#index3371917
#% 
#!
  
#*Self-organizing Mechanism for Development of Space-filling Neuronal Dendrites.
#@Kaoru Sugimura,Kohei Shimono,Tadashi Uemura,Atsushi Mochizuki
#t2007
#cPLoS Computational Biology
#index3372209
#% 
#!
  
#*Silent Synapses, LTP, and the Indirect Parallel-Fibre Pathway: Computational Consequences of Optimal Cerebellar Noise-Processing.
#@John Porrill,Paul Dean
#t2008
#cPLoS Computational Biology
#index3372306
#% 
#!
  
#*Neurobiological Models of Two-Choice Decision Making Can Be Reduced to a One-Dimensional Nonlinear Diffusion Equation.
#@Alex Roxin,Anders Ledberg
#t2008
#cPLoS Computational Biology
#index3372134
#% 
#!
  
#*Predicting Functional Alternative Splicing by Measuring RNA Selection Pressure from Multigenome Alignments.
#@Hongchao Lu,Lan Lin,Seiko Sato,Yi Xing,Christopher J. Lee
#t2009
#cPLoS Computational Biology
#index3372415
#% 
#!
  
#*Innate Visual Learning through Spontaneous Activity Patterns.
#@Mark V. Albert,Adam Schnabel,David J. Field
#t2008
#cPLoS Computational Biology
#index3372041
#% 
#!
  
#*Enhancement of Transport Selectivity through Nano-Channels by Non-Specific Competition.
#@Anton Zilman,Stefano Di Talia,Tijana Jovanovic-Talisman,Brian T. Chait,Michael P. Rout,Marcelo O. Magnasco
#t2010
#cPLoS Computational Biology
#index3371956
#% 
#!
  
#*Identification of Potent EGFR Inhibitors from TCM Database@Taiwan.
#@Shun-Chieh Yang,Su-Sen Chang,Hsin-Yi Chen,Calvin Yu-Chian Chen
#t2011
#cPLoS Computational Biology
#index3372182
#% 
#!
  
#*Genome-Scale Analysis of Translation Elongation with a Ribosome Flow Model.
#@Shlomi Reuveni,Isaac Meilijson,Martin Kupiec,Eytan Ruppin,Tamir Tuller
#t2011
#cPLoS Computational Biology
#index3372353
#% 
#!
  
#*Differential Repression of Alternative Transcripts: A Screen for miRNA Targets.
#@Matthieu Legendre,William Ritchie,Fabrice Lopez,Daniel Gautheret
#t2006
#cPLoS Computational Biology
#index3372367
#% 
#!
  
#*Structure of Spontaneous UP and DOWN Transitions Self-Organizing in a Cortical Network Model.
#@Siu Kang,Katsunori Kitano,Tomoki Fukai
#t2008
#cPLoS Computational Biology
#index3372736
#% 
#!
  
#*Expansion of Protein Domain Repeats.
#@Åsa K. Björklund,Diana Ekman,Arne Elofsson
#t2006
#cPLoS Computational Biology
#index3372607
#% 
#!
  
#*Statistical Dynamics of Flowing Red Blood Cells by Morphological Image Processing.
#@John M. Higgins,David T. Eddington,Sangeeta N. Bhatia,L. Mahadevan
#t2009
#cPLoS Computational Biology
#index3372636
#% 
#!
  
#*Intrinsic Disorder in Protein Interactions: Insights From a Comprehensive Structural Analysis.
#@Jessica H. Fong,Benjamin A. Shoemaker,Sergiy O. Garbuzynskiy,Michail Yu. Lobanov,Oxana V. Galzitskaya,Anna R. Panchenko
#t2009
#cPLoS Computational Biology
#index3372775
#% 
#!
  
#*Synaptic Plasticity Can Produce and Enhance Direction Selectivity.
#@Sean Carver,Eatai Roth,Noah J. Cowan,Eric S. Fortune
#t2008
#cPLoS Computational Biology
#index3372677
#% 
#!
  
#*Adaptable Functionality of Transcriptional Feedback in Bacterial Two-Component Systems.
#@J. Christian J. Ray,Oleg A. Igoshin
#t2010
#cPLoS Computational Biology
#index3372107
#% 
#!
  
#*What a Plant Sounds Like: The Statistics of Vegetation Echoes as Received by Echolocating Bats.
#@Yossi Yovel,Peter Stilz,Matthias O. Franz,Arjan Boonman,Hans-Ulrich Schnitzler
#t2009
#cPLoS Computational Biology
#index3372841
#% 
#!
  
#*Dominant Glint Based Prey Localization in Horseshoe Bats: A Possible Strategy for Noise Rejection.
#@Dieter Vanderelst,Jonas Reijniers,Uwe Firzlaff,Herbert Peremans
#t2011
#cPLoS Computational Biology
#index3372164
#% 
#!
  
#*The Role of Additive Neurogenesis and Synaptic Plasticity in a Hippocampal Memory Model with Grid-Cell Like Input.
#@Peter A. Appleby,Gerd Kempermann,Laurenz Wiskott
#t2011
#cPLoS Computational Biology
#index3371992
#% 
#!
  
#*Speed, Sensitivity, and Bistability in Auto-activating Signaling Circuits.
#@Rutger Hermsen,David W. Erickson,Terence Hwa
#t2011
#cPLoS Computational Biology
#index3372331
#% 
#!
  
#*Integrating Signals from the T-Cell Receptor and the Interleukin-2 Receptor.
#@Tilo Beyer,Mandy Busse,Kroum Hristov,Slavyana Gurbiel,Michal Smida,Utz-Uwe Haus,Kathrin Ballerstein,Frank Pfeuffer,Robert Weismantel,Burkhart Schraven,Jonathan A. Lindquist
#t2011
#cPLoS Computational Biology
#index3372599
#% 
#!
  
#*Pattern Recognition Software and Techniques for Biological Image Analysis.
#@Lior Shamir,John D. Delaney,Nikita Orlov,D. Mark Eckley,Ilya G. Goldberg
#t2010
#cPLoS Computational Biology
#index3371925
#% 
#!
  
#*A Neurodynamic Account of Spontaneous Behaviour.
#@Jun Namikawa,Ryunosuke Nishimoto,Jun Tani
#t2011
#cPLoS Computational Biology
#index3371882
#% 
#!
  
#*An Integrative Multi-Network and Multi-Classifier Approach to Predict Genetic Interactions.
#@Gaurav Pandey,Bin Zhang,Aaron N. Chang,Chad L. Myers,Jun Zhu,Vipin Kumar,Eric E. Schadt
#t2010
#cPLoS Computational Biology
#index3371862
#% 
#!
  
#*The Emergence of Up and Down States in Cortical Networks.
#@David Holcman,Misha Tsodyks
#t2006
#cPLoS Computational Biology
#index3372370
#% 
#!
  
#*AutoClickChem: Click Chemistry .
#@Jacob D. Durrant,James Andrew McCammon
#t2012
#cPLoS Computational Biology
#index3372720
#% 
#!
  
#*Dependence of Bacterial Chemotaxis on Gradient Shape and Adaptation Rate.
#@Nikita Vladimirov,Linda Løvdok,Dirk Lebiedz,Victor Sourjik
#t2008
#cPLoS Computational Biology
#index3372303
#% 
#!
  
#*The Dynamics of Human Body Weight Change.
#@Carson C. Chow,Kevin D. Hall
#t2008
#cPLoS Computational Biology
#index3372297
#% 
#!
  
#*Removal of AU Bias from Microarray mRNA Expression Data Enhances Computational Identification of Active MicroRNAs.
#@Ran Elkon,Reuven Agami
#t2008
#cPLoS Computational Biology
#index3372030
#% 
#!
  
#*Geometric De-noising of Protein-Protein Interaction Networks.
#@Oleksii Kuchaiev,Marija Rasajski,Desmond J. Higham,Natasa Przulj
#t2009
#cPLoS Computational Biology
#index3372544
#% 
#!
  
#*Effect of Network Architecture on Synchronization and Entrainment Properties of the Circadian Oscillations in the Suprachiasmatic Nucleus.
#@Marc Hafner,Heinz Koeppl,Didier Gonze
#t2012
#cPLoS Computational Biology
#index3372354
#% 
#!
  
#*Computer-Based Screening of Functional Conformers of Proteins.
#@Héctor Marlosti Montiel Molina,César Millán-Pacheco,Nina Pastor,Gabriel del Rio
#t2008
#cPLoS Computational Biology
#index3372219
#% 
#!
  
#*On the Origin of DNA Genomes: Evolution of the Division of Labor between Template and Catalyst in Model Replicator Systems.
#@Nobuto Takeuchi,Paulien Hogeweg,Eugene V. Koonin
#t2011
#cPLoS Computational Biology
#index3372161
#% 
#!
  
#*Investigating the Conformational Stability of Prion Strains through a Kinetic Replication Model.
#@Mattia Zampieri,Giuseppe Legname,Claudio Altafini
#t2009
#cPLoS Computational Biology
#index3372202
#% 
#!
  
#*Noise during Rest Enables the Exploration of the Brain's Dynamic Repertoire.
#@Anandamohan Ghosh,Y. Rho,Anthony Randal McIntosh,Rolf Kötter,Viktor K. Jirsa
#t2008
#cPLoS Computational Biology
#index3372238
#% 
#!
  
#*Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes.
#@Aristotelis Tsirigos,Isidore Rigoutsos
#t2009
#cPLoS Computational Biology
#index3372407
#% 
#!
  
#*Transcriptome and Proteome Exploration to Model Translation Efficiency and Protein Stability in .
#@Clémentine Dressaire,Christophe Gitton,Pascal Loubière,Véronique Monnet,Isabelle Queinnec,Muriel Cocaign-Bousquet
#t2009
#cPLoS Computational Biology
#index3372685
#% 
#!
  
#*Computational Fragment-Based Binding Site Identification by Ligand Competitive Saturation.
#@Olgun Guvench,Alexander D. MacKerell Jr.
#t2009
#cPLoS Computational Biology
#index3372749
#% 
#!
  
#*A Variant of TNFR2-Fc Fusion Protein Exhibits Improved Efficacy in Treating Experimental Rheumatoid Arthritis.
#@Tong Yang,Zheng Wang,Fang Wu,Jingwei Tan,Yijun Shen,Erguang Li,Jingzhi Dai,Ronghai Shen,Gang Li,Jinsong Wu,Luochun Wang,Haibo Wang,Yanjun Liu
#t2010
#cPLoS Computational Biology
#index3372418
#% 
#!
  
#*The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing.
#@Paul M. Magwene,John H. Willis,John K. Kelly
#t2011
#cPLoS Computational Biology
#index3372770
#% 
#!
  
#*Mapping Dynamic Histone Acetylation Patterns to Gene Expression in Nanog-Depleted Murine Embryonic Stem Cells.
#@Florian Markowetz,Klaas W. Mulder,Edoardo M. Airoldi,Ihor Lemischka,Olga G. Troyanskaya
#t2010
#cPLoS Computational Biology
#index3371982
#% 
#!
  
#*Metabolic Network Topology Reveals Transcriptional Regulatory Signatures of Type 2 Diabetes.
#@Aleksej Zelezniak,Tune H. Pers,Simão Soares,Mary Elizabeth Patti,Kiran Raosaheb Patil
#t2010
#cPLoS Computational Biology
#index3372474
#% 
#!
  
#*Numerical Modelling Of The V-J Combinations Of The T Cell Receptor TRA/TRD Locus.
#@Florence Thuderoz,Maria-Ana Simonet,Olivier Hansen,Nicolas Pasqual,Aurélie Dariz,Thierry-Pascal Baum,Vivien Hierle,Jacques Demongeot,Patrice-Noël Marche,Evelyne Jouvin-Marche
#t2010
#cPLoS Computational Biology
#index3372098
#% 
#!
  
#*Computational Model of the Insect Pheromone Transduction Cascade.
#@Yuqiao Gu,Philippe Lucas,Jean-Pierre Rospars
#t2009
#cPLoS Computational Biology
#index3372387
#% 
#!
  
#*Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression.
#@Xin He,Md. Abul Hassan Samee,Charles Blatti,Saurabh Sinha
#t2010
#cPLoS Computational Biology
#index3372377
#% 
#!
  
#*Dog as an Outgroup to Human and Mouse.
#@Gerton Lunter
#t2007
#cPLoS Computational Biology
#index3371892
#% 
#!
  
#*Identification of a Kinase Profile that Predicts Chromosome Damage Induced by Small Molecule Kinase Inhibitors.
#@Andrew J. Olaharski,Nina Gonzaludo,Hans Bitter,David Goldstein,Stephan Kirchner,Hirdesh Uppal,Kyle Kolaja
#t2009
#cPLoS Computational Biology
#index3372426
#% 
#!
  
#*How Structure Determines Correlations in Neuronal Networks.
#@Volker Pernice,Benjamin Staude,Stefano Cardanobile,Stefan Rotter
#t2011
#cPLoS Computational Biology
#index3372380
#% 
#!
  
#*Quantifying the Relative Contributions of Divisive and Subtractive Feedback to Rhythm Generation.
#@Joël Tabak,John Rinzel,Richard Bertram
#t2011
#cPLoS Computational Biology
#index3372325
#% 
#!
  
#*A Scalable Approach for Discovering Conserved Active Subnetworks across Species.
#@Raamesh Deshpande,Shikha Sharma,Catherine M. Verfaillie,Wei-Shou Hu,Chad L. Myers
#t2010
#cPLoS Computational Biology
#index3372635
#% 
#!
  
#*Computational Methods for Protein Identification from Mass Spectrometry Data.
#@Leo C. McHugh,Jonathan W. Arthur
#t2008
#cPLoS Computational Biology
#index3372510
#% 
#!
  
#*Long-Range Intra-Protein Communication Can Be Transmitted by Correlated Side-Chain Fluctuations Alone.
#@Kateri H. DuBay,Jacques P. Bothma,Phillip L. Geissler
#t2011
#cPLoS Computational Biology
#index3372048
#% 
#!
  
#*Modelling Vesicular Release at Hippocampal Synapses.
#@Suhita Nadkarni,Thomas M. Bartol,Terrence J. Sejnowski,Herbert Levine
#t2010
#cPLoS Computational Biology
#index3372644
#% 
#!
  
#*Neurobiologically Realistic Determinants of Self-Organized Criticality in Networks of Spiking Neurons.
#@Mikail Rubinov,Olaf Sporns,Jean-Philippe Thivierge,Michael Breakspear
#t2011
#cPLoS Computational Biology
#index3372409
#% 
#!
  
#*Learning, Memory, and the Role of Neural Network Architecture.
#@Ann M. Hermundstad,Kevin S. Brown,Danielle S. Bassett,Jean M. Carlson
#t2011
#cPLoS Computational Biology
#index3372013
#% 
#!
  
#*Comparing Families of Dynamic Causal Models.
#@Will D. Penny,Klaas E. Stephan,Jean Daunizeau,Maria J. Rosa,Karl J. Friston,Thomas M. Schofield,Alexander P. Leff
#t2010
#cPLoS Computational Biology
#index3372678
#% 
#!
  
#*Regulatory Circuit of Human MicroRNA Biogenesis.
#@Ji Lee,Zhihua Li,Rachel Brower-Sinning,Bino John
#t2007
#cPLoS Computational Biology
#index3372574
#% 
#!
  
#*Reversible and Noisy Progression towards a Commitment Point Enables Adaptable and Reliable Cellular Decision-Making.
#@Anna Kuchina,Lorena Espinar,Jordi García-Ojalvo,Gürol M. Süel
#t2011
#cPLoS Computational Biology
#index3372792
#% 
#!
  
#*The Emergence of Alternative 3′ and 5′ Splice Site Exons from Constitutive Exons.
#@Eli Koren,Galit Lev-Maor,Gil Ast
#t2007
#cPLoS Computational Biology
#index3372359
#% 
#!
  
#*Microarray Based Diagnosis Profits from Better Documentation of Gene Expression Signatures.
#@Dennis Kostka,Rainer Spang
#t2008
#cPLoS Computational Biology
#index3372143
#% 
#!
  
#*Number and Size Distribution of Colorectal Adenomas under the Multistage Clonal Expansion Model of Cancer.
#@Anup Dewanji,Jihyoun Jeon,Rafael Meza,E. Georg Luebeck
#t2011
#cPLoS Computational Biology
#index3372106
#% 
#!
  
#*Bang-Bang Control of Feeding: Role of Hypothalamic and Satiety Signals.
#@B. Silvano Zanutto,John E. R. Staddon
#t2007
#cPLoS Computational Biology
#index3372579
#% 
#!
  
#*Filament Depolymerization Can Explain Chromosome Pulling during Bacterial Mitosis.
#@Edward J. Banigan,Michael A. Gelbart,Zemer Gitai,Ned S. Wingreen,Andrea J. Liu
#t2011
#cPLoS Computational Biology
#index3372649
#% 
#!
  
#*Coexistence of Lateral and Co-Tuned Inhibitory Configurations in Cortical Networks.
#@Robert B. Levy,Alex D. Reyes
#t2011
#cPLoS Computational Biology
#index3371872
#% 
#!
  
#*A Novel Three-Phase Model of Brain Tissue Microstructure.
#@Jana L. Gevertz,Salvatore Torquato
#t2008
#cPLoS Computational Biology
#index3371935
#% 
#!
  
#*Dynamic Modeling of Vaccinating Behavior as a Function of Individual Beliefs.
#@Flávio Codeço Coelho,Cláudia T. Codeço
#t2009
#cPLoS Computational Biology
#index3371928
#% 
#!
  
#*A Mathematical Model of Muscle Containing Heterogeneous Half-Sarcomeres Exhibits Residual Force Enhancement.
#@Stuart G. Campbell,P. Chris Hatfield,Kenneth S. Campbell
#t2011
#cPLoS Computational Biology
#index3372454
#% 
#!
  
#*Selective Constraint on Noncoding Regions of Hominid Genomes.
#@Eliot C. Bush,Bruce T. Lahn
#t2005
#cPLoS Computational Biology
#index3372828
#% 
#!
  
#*The International Society for Computational Biology 10th Anniversary.
#@Lawrence Hunter,Russ B. Altman,Philip E. Bourne
#t2007
#cPLoS Computational Biology
#index3372248
#% 
#!
  
#*High Epitope Expression Levels Increase Competition between T Cells.
#@Almut Scherer,Marcel Salathé,Sebastian Bonhoeffer
#t2006
#cPLoS Computational Biology
#index3372136
#% 
#!
  
#*What Is Stochastic Resonance? Definitions, Misconceptions, Debates, and Its Relevance to Biology.
#@Mark D. McDonnell,Derek Abbott
#t2009
#cPLoS Computational Biology
#index3372116
#% 
#!
  
#*Dose-to-Duration Encoding and Signaling beyond Saturation in Intracellular Signaling Networks.
#@Marcelo Behar,Nan Hao,Henrik G. Dohlman,Timothy C. Elston
#t2008
#cPLoS Computational Biology
#index3372022
#% 
#!
  
#*High Degree of Heterogeneity in Alzheimer's Disease Progression Patterns.
#@Natalia L. Komarova,Craig J. Thalhauser
#t2011
#cPLoS Computational Biology
#index3372245
#% 
#!
  
#*A Dynamical Model of Oocyte Maturation Unveils Precisely Orchestrated Meiotic Decisions.
#@Benjamin Pfeuty,Jean-Francois Bodart,Ralf Blossey,Marc Lefranc
#t2012
#cPLoS Computational Biology
#index3372473
#% 
#!
  
#*Robust Detection of Hierarchical Communities from Gene Expression Data.
#@Santiago Treviño III,Yudong Sun,Tim F. Cooper,Kevin E. Bassler
#t2012
#cPLoS Computational Biology
#index3372819
#% 
#!
  
#*The Carbon Assimilation Network in Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes.
#@Valentina Baldazzi,Delphine Ropers,Yves Markowicz,Daniel Kahn,Johannes Geiselmann,Hidde de Jong
#t2010
#cPLoS Computational Biology
#index3372778
#% 
#!
  
#*PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny.
#@Rahul Siddharthan,Eric D. Siggia,Erik van Nimwegen
#t2005
#cPLoS Computational Biology
#index3372616
#% 
#!
  
#*Structural Evolution of the Protein Kinase-Like Superfamily.
#@Eric D. Scheeff,Philip E. Bourne
#t2005
#cPLoS Computational Biology
#index3372825
#% 
#!
  
#*Query-Dependent Banding (QDB) for Faster RNA Similarity Searches.
#@Eric P. Nawrocki,Sean R. Eddy
#t2007
#cPLoS Computational Biology
#index3372086
#% 
#!
  
#*Rapid Transition towards the Division of Labor via Evolution of Developmental Plasticity.
#@Sergey Gavrilets
#t2010
#cPLoS Computational Biology
#index3372069
#% 
#!
  
#*Meta-Analysis of Differentiating Mouse Embryonic Stem Cell Gene Expression Kinetics Reveals Early Change of a Small Gene Set.
#@Clive H. Glover,Michael Marin,Connie J. Eaves,Cheryl D. Helgason,James M. Piret,Jennifer Bryan
#t2006
#cPLoS Computational Biology
#index3372015
#% 
#!
  
#*Modeling Signal Propagation Mechanisms and Ligand-Based Conformational Dynamics of the Hsp90 Molecular Chaperone Full-Length Dimer.
#@Giulia Morra,Gennady Verkhivker,Giorgio Colombo
#t2009
#cPLoS Computational Biology
#index3372575
#% 
#!
  
#*Cell-Sorting at the A/P Boundary in the Wing Primordium: A Computational Model to Consolidate Observed Non-Local Effects of Hh Signaling.
#@Sabine Schilling,Maria Willecke,Tinri Aegerter-Wilmsen,Olaf A. Cirpka,Konrad Basler,Christian von Mering
#t2011
#cPLoS Computational Biology
#index3372204
#% 
#!
  
#*Accurate Quantification of Functional Analogy among Close Homologs.
#@Maria D. Chikina,Olga G. Troyanskaya
#t2011
#cPLoS Computational Biology
#index3372066
#% 
#!
  
#*Minimal Models of Multidimensional Computations.
#@Jeffrey D. Fitzgerald,Lawrence C. Sincich,Tatyana O. Sharpee
#t2011
#cPLoS Computational Biology
#index3372803
#% 
#!
  
#*Accurate Path Integration in Continuous Attractor Network Models of Grid Cells.
#@Yoram Burak,Ila R. Fiete
#t2009
#cPLoS Computational Biology
#index3372714
#% 
#!
  
#*Identification of Networks of Co-Occurring, Tumor-Related DNA Copy Number Changes Using a Genome-Wide Scoring Approach.
#@Christiaan Klijn,Jan Bot,David J. Adams,Marcel J. T. Reinders,Lodewyk F. A. Wessels,Jos Jonkers
#t2010
#cPLoS Computational Biology
#index3372608
#% 
#!
  
#*Spatial Simulations of Myxobacterial Development.
#@Antony B. Holmes,Sara Kalvala,David E. Whitworth
#t2010
#cPLoS Computational Biology
#index3372265
#% 
#!
  
#*Patient-Specific Data Fusion Defines Prognostic Cancer Subtypes.
#@Yinyin Yuan,Richard S. Savage,Florian Markowetz
#t2011
#cPLoS Computational Biology
#index3372397
#% 
#!
  
#*Relationships between Gene Expression and Brain Wiring in the Adult Rodent Brain.
#@Leon French,Paul Pavlidis
#t2011
#cPLoS Computational Biology
#index3372190
#% 
#!
  
#*Systems Analysis of Chaperone Networks in the Malarial Parasite .
#@Soundara Raghavan Pavithra,Ranjit Kumar,Utpal Tatu
#t2007
#cPLoS Computational Biology
#index3372756
#% 
#!
  
#*Correction: Signal Propagation in Proteins and Relation to Equilibrium Fluctuations.
#@Chakra Chennubhotla,Ivet Bahar
#t2007
#cPLoS Computational Biology
#index3372344
#% 
#!
  
#*Comparison of Insertional RNA Editing in .
#@Cai Chen,David Frankhouser,Ralf Bundschuh
#t2012
#cPLoS Computational Biology
#index3371832
#% 
#!
  
#*Predicting Co-Complexed Protein Pairs from Heterogeneous Data.
#@Jian Qiu,William Stafford Noble
#t2008
#cPLoS Computational Biology
#index3372783
#% 
#!
  
#*Simultaneous Genome-Wide Inference of Physical, Genetic, Regulatory, and Functional Pathway Components.
#@Christopher Y. Park,David C. Hess,Curtis Huttenhower,Olga G. Troyanskaya
#t2010
#cPLoS Computational Biology
#index3371955
#% 
#!
  
#*Computational Prediction and Experimental Assessment of Secreted/Surface Proteins from H37Rv.
#@Carolina Vizcaíno,Daniel Restrepo-Montoya,Diana Rodríguez,Luis F. Niño,Marisol Ocampo,Magnolia Vanegas,María T. Reguero,Nora L. Martínez,Manuel E. Patarroyo,Manuel A. Patarroyo
#t2010
#cPLoS Computational Biology
#index3372378
#% 
#!
  
#*Authors' Reply.
#@Hung D. Nguyen,Maki Yoshihama,Naoya Kenmochi
#t2006
#cPLoS Computational Biology
#index3372539
#% 
#!
  
#*Extracting Gene Networks for Low-Dose Radiation Using Graph Theoretical Algorithms.
#@Brynn H. Voy,Jon A. Scharff,Andy D. Perkins,Arnold M. Saxton,Bhavesh Borate,Elissa J. Chesler,Lisa K. Branstetter,Michael A. Langston
#t2006
#cPLoS Computational Biology
#index3371841
#% 
#!
  
#*Representation of Dynamical Stimuli in Populations of Threshold Neurons.
#@Tatjana Tchumatchenko,Fred Wolf
#t2011
#cPLoS Computational Biology
#index3372268
#% 
#!
  
#*Genome Comparison of Human and Non-Human Malaria Parasites Reveals Species Subset-Specific Genes Potentially Linked to Human Disease.
#@Christian Frech,Nansheng Chen
#t2011
#cPLoS Computational Biology
#index3372172
#% 
#!
  
#*Genetic Progression and the Waiting Time to Cancer.
#@Niko Beerenwinkel,Tibor Antal,David Dingli,Arne Traulsen,Kenneth W. Kinzler,Victor E. Velculescu,Bert Vogelstein,Martin A. Nowak
#t2007
#cPLoS Computational Biology
#index3371920
#% 
#!
  
#*Structure and Dynamics of Interphase Chromosomes.
#@Angelo Rosa,Ralf Everaers
#t2008
#cPLoS Computational Biology
#index3372388
#% 
#!
  
#*From Endosymbiont to Host-Controlled Organelle: The Hijacking of Mitochondrial Protein Synthesis and Metabolism.
#@Toni Gabaldón,Martijn A. Huynen
#t2007
#cPLoS Computational Biology
#index3372593
#% 
#!
  
#*A Role for Rebinding in Rapid and Reliable T Cell Responses to Antigen.
#@Omer Dushek,Raibatak Das,Daniel Coombs
#t2009
#cPLoS Computational Biology
#index3372311
#% 
#!
  
#*Insights into Protein-DNA Interactions through Structure Network Analysis.
#@R. Sathyapriya,M. S. Vijayabaskar,Saraswathi Vishveshwara
#t2008
#cPLoS Computational Biology
#index3372842
#% 
#!
  
#*An Acidic Loop and Cognate Phosphorylation Sites Define a Molecular Switch That Modulates Ubiquitin Charging Activity in Cdc34-Like Enzymes.
#@Elena Papaleo,Valeria Ranzani,Farida Tripodi,Alessandro Vitriolo,Claudia Cirulli,Piercarlo Fantucci,Lilia Alberghina,Marco Vanoni,Luca De Gioia,Paola Coccetti
#t2011
#cPLoS Computational Biology
#index3372814
#% 
#!
  
#*RNAi Development.
#@Mark Gerstein,Shawn M. Douglas
#t2007
#cPLoS Computational Biology
#index3371911
#% 
#!
  
#*Prioritizing Genomic Drug Targets in Pathogens: Application to .
#@Samiul Hasan,Sabine Daugelat,P. S. Srinivasa Rao,Mark Schreiber
#t2006
#cPLoS Computational Biology
#index3371945
#% 
#!
  
#*A Multiscale Approach to Characterize the Early Aggregation Steps of the Amyloid-Forming Peptide GNNQQNY from the Yeast Prion Sup-35.
#@Jessica Nasica-Labouze,Massimiliano Meli,Philippe Derreumaux,Giorgio Colombo,Normand Mousseau
#t2011
#cPLoS Computational Biology
#index3372664
#% 
#!
  
#*Ligand-Dependent Conformations and Dynamics of the Serotonin 5-HT Receptor Determine Its Activation and Membrane-Driven Oligomerization Properties.
#@Jufang Shan,George Khelashvili,Sayan Mondal,Ernest L. Mehler,Harel Weinstein
#t2012
#cPLoS Computational Biology
#index3372286
#% 
#!
  
#*Organization of Excitable Dynamics in Hierarchical Biological Networks.
#@Mark Müller-Linow,Claus C. Hilgetag,Marc-Thorsten Hütt
#t2008
#cPLoS Computational Biology
#index3371973
#% 
#!
  
#*The Origins of Lactase Persistence in Europe.
#@Yuval Itan,Adam Powell,Mark A. Beaumont,Joachim Burger,Mark G. Thomas
#t2009
#cPLoS Computational Biology
#index3372551
#% 
#!
  
#*Learning and Generalization under Ambiguity: An fMRI Study.
#@Justin R. Chumbley,Guillaume Flandin,Dominik R. Bach,Jean Daunizeau,E. Fehr,Raymond J. Dolan,Karl J. Friston
#t2012
#cPLoS Computational Biology
#index3372700
#% 
#!
  
#*Prediction of Co-Receptor Usage of HIV-1 from Genotype.
#@J. Nikolaj Dybowski,Dominik Heider,Daniel Hoffmann
#t2010
#cPLoS Computational Biology
#index3372275
#% 
#!
  
#*A Bayesian Approach to Analyse Genetic Variation within RNA Viral Populations.
#@Trevelyan J. McKinley,Pablo R. Murcia,Julia R. Gog,Mariana Varela,James L. N. Wood
#t2011
#cPLoS Computational Biology
#index3371985
#% 
#!
  
#*Exploration of Multi-State Conformational Dynamics and Underlying Global Functional Landscape of Maltose Binding Protein.
#@Yong Wang,Chun Tang,Erkang Wang,Jin Wang
#t2012
#cPLoS Computational Biology
#index3371948
#% 
#!
  
#*Quantitative Prediction of miRNA-mRNA Interaction Based on Equilibrium Concentrations.
#@Chikako Ragan,Michael Zuker,Mark A. Ragan
#t2011
#cPLoS Computational Biology
#index3372797
#% 
#!
  
#*Rule-Based Cell Systems Model of Aging using Feedback Loop Motifs Mediated by Stress Responses.
#@Andres Kriete,William J. Bosl,Glenn Booker
#t2010
#cPLoS Computational Biology
#index3372529
#% 
#!
  
#*On the Process of Becoming a Great Scientist.
#@Morgan C. Giddings
#t2008
#cPLoS Computational Biology
#index3372769
#% 
#!
  
#*Most Random Gene Expression Signatures Are Significantly Associated with Breast Cancer Outcome.
#@David Venet,Jacques E. Dumont,Vincent Detours
#t2011
#cPLoS Computational Biology
#index3372293
#% 
#!
  
#*Flexible and Accurate Detection of Genomic Copy-Number Changes from aCGH.
#@Oscar M. Rueda,Ramón Díaz-Uriarte
#t2007
#cPLoS Computational Biology
#index3371835
#% 
#!
  
#*Order-Based Representation in Random Networks of Cortical Neurons.
#@Goded Shahaf,Danny Eytan,Asaf Gal,Einat Kermany,Vladimir Lyakhov,Christoph Zrenner,Shimon Marom
#t2008
#cPLoS Computational Biology
#index3372479
#% 
#!
  
#*Dynamic Effective Connectivity of Inter-Areal Brain Circuits.
#@Demian Battaglia,Annette Witt,Fred Wolf,Theo Geisel
#t2012
#cPLoS Computational Biology
#index3372460
#% 
#!
  
#*Network Models of TEM β-Lactamase Mutations Coevolving under Antibiotic Selection Show Modular Structure and Anticipate Evolutionary Trajectories.
#@Violeta Beleva Guthrie,Jennifer Allen,Manel Camps,Rachel Karchin
#t2011
#cPLoS Computational Biology
#index3372258
#% 
#!
  
#*Gene Expression in the Rodent Brain is Associated with Its Regional Connectivity.
#@Lior Wolf,Chen Goldberg,Nathan Manor,Roded Sharan,Eytan Ruppin
#t2011
#cPLoS Computational Biology
#index3372154
#% 
#!
  
#*Will Widgets and Semantic Tagging Change Computational Biology?
#@Philip E. Bourne,Bojan Beran,Chunxiao Bi,Wolfgang Bluhm,Roland Dunbrack,Andreas Prlic,Greg B. Quinn,Peter W. Rose,Raship Shah,Wendy Tao,Brian Weitzner,Benjamin T. Yukich
#t2010
#cPLoS Computational Biology
#index3372133
#% 
#!
  
#*Joint Analysis of Multiple Metagenomic Samples.
#@Yael Baran,Eran Halperin
#t2012
#cPLoS Computational Biology
#index3372847
#% 
#!
  
#*A Review of 2009 for .
#@Rosemary Dickin,Cecy Marden,Catherine Nancarrow,Philip E. Bourne
#t2010
#cPLoS Computational Biology
#index3372532
#% 
#!
  
#*Minimal Size of Cell Assemblies Coordinated by Gamma Oscillations.
#@Christoph Börgers,Giovanni Talei Franzesi,Fiona E. N. LeBeau,Edward S. Boyden,Nancy Kopell
#t2012
#cPLoS Computational Biology
#index3371974
#% 
#!
  
#*A Race between Tumor Immunoescape and Genome Maintenance Selects for Optimum Levels of (epi)genetic Instability.
#@Shingo Iwami,Hiroshi Haeno,Franziska Michor
#t2012
#cPLoS Computational Biology
#index3372033
#% 
#!
  
#*Structural Biology by NMR: Structure, Dynamics, and Interactions.
#@Phineus R. Markwick,Therese E. Malliavin,Michael Nilges
#t2008
#cPLoS Computational Biology
#index3372741
#% 
#!
  
#*On Modeling HIV and T Cells In Vivo: Assessing Causal Estimators in Vaccine Trials.
#@W. David Wick,Peter B. Gilbert,Steven G. Self
#t2006
#cPLoS Computational Biology
#index3371889
#% 
#!
  
#*Spatial Analysis of Expression Patterns Predicts Genetic Interactions at the Mid-Hindbrain Boundary.
#@Dominik M. Wittmann,Florian Blöchl,Dietrich Trümbach,Wolfgang Wurst,Nilima Prakash,Fabian J. Theis
#t2009
#cPLoS Computational Biology
#index3372199
#% 
#!
  
#*Slowness: An Objective for Spike-Timing-Dependent Plasticity?
#@Henning Sprekeler,Christian Michaelis,Laurenz Wiskott
#t2007
#cPLoS Computational Biology
#index3371918
#% 
#!
  
#*Evidence for Gene-Specific Rather Than Transcription Rate-Dependent Histone H3 Exchange in Yeast Coding Regions.
#@Irit Gat-Viks,Martin Vingron
#t2009
#cPLoS Computational Biology
#index3372217
#% 
#!
  
#*Gradients and Modulation of K Channels Optimize Temporal Accuracy in Networks of Auditory Neurons.
#@Leonard Kaczmarek
#t2012
#cPLoS Computational Biology
#index3372296
#% 
#!
  
#*Reverse Engineering the Gap Gene Network of .
#@Theodore J. Perkins,Johannes Jaeger,John Reinitz,Leon Glass
#t2006
#cPLoS Computational Biology
#index3371959
#% 
#!
  
#*Improving the Precision of the Structure-Function Relationship by Considering Phylogenetic Context.
#@Boris E. Shakhnovich
#t2005
#cPLoS Computational Biology
#index3371899
#% 
#!
  
#*Boltzmann Energy-based Image Analysis Demonstrates that Extracellular Domain Size Differences Explain Protein Segregation at Immune Synapses.
#@Nigel J. Burroughs,Karsten Köhler,Vladimir Miloserdov,Michael L. Dustin,P. Anton van der Merwe,Daniel M. Davis
#t2011
#cPLoS Computational Biology
#index3372230
#% 
#!
  
#*Of Toasters and Molecular Ticker Tapes.
#@Konrad P. Körding
#t2011
#cPLoS Computational Biology
#index3372522
#% 
#!
  
#*Evolutionary Modeling of Rate Shifts Reveals Specificity Determinants in HIV-1 Subtypes.
#@Osnat Penn,Adi Stern,Nimrod D. Rubinstein,Julien Dutheil,Eran Bacharach,Nicolas Galtier,Tal Pupko
#t2008
#cPLoS Computational Biology
#index3372321
#% 
#!
  
#*Predicting the Evolution of Sex on Complex Fitness Landscapes.
#@Dusan Misevic,Roger D. Kouyos,Sebastian Bonhoeffer
#t2009
#cPLoS Computational Biology
#index3372334
#% 
#!
  
#*The Role of Elastic Stresses on Leaf Venation Morphogenesis.
#@Maria F. Laguna,Steffen Bohn,Eduardo A. Jagla
#t2008
#cPLoS Computational Biology
#index3372399
#% 
#!
  
#*The Natural Statistics of Audiovisual Speech.
#@Chandramouli Chandrasekaran,Andrea Trubanova,Sébastien Stillittano,Alice Caplier,Asif A. Ghazanfar
#t2009
#cPLoS Computational Biology
#index3372097
#% 
#!
  
#*Selection of Target Sites for Mobile DNA Integration in the Human Genome.
#@Charles C. Berry,Sridhar Hannenhalli,Jeremy Leipzig,Frederic D. Bushman
#t2006
#cPLoS Computational Biology
#index3372771
#% 
#!
  
#*Rapid Sampling of Molecular Motions with Prior Information Constraints.
#@Barak Raveh,Angela Enosh,Ora Schueler-Furman,Dan Halperin
#t2009
#cPLoS Computational Biology
#index3372806
#% 
#!
  
#*A Dynamic Neural Field Model of Mesoscopic Cortical Activity Captured with Voltage-Sensitive Dye Imaging.
#@Valentin Markounikau,Christian Igel,Amiram Grinvald,Dirk Jancke
#t2010
#cPLoS Computational Biology
#index3372253
#% 
#!
  
#*Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component Analysis.
#@Andrew E. Teschendorff,Michel Journée,Pierre-Antoine Absil,Rodolphe Sepulchre,Carlos H. Caldas
#t2007
#cPLoS Computational Biology
#index3372537
#% 
#!
  
#*Functional Rotation of the Transporter AcrB: Insights into Drug Extrusion from Simulations.
#@Robert Schulz,Attilio Vittorio Vargiu,Francesca Collu,Ulrich Kleinekathöfer,Paolo Ruggerone
#t2010
#cPLoS Computational Biology
#index3372481
#% 
#!
  
#*Automated Querying of Genome Databases.
#@Peter Schattner
#t2007
#cPLoS Computational Biology
#index3372425
#% 
#!
  
#*A Phenomenological Theory of Spatially Structured Local Synaptic Connectivity.
#@Bagrat R. Amirikian
#t2005
#cPLoS Computational Biology
#index3372820
#% 
#!
  
#*Transmembrane Helix Dynamics of Bacterial Chemoreceptors Supports a Piston Model of Signalling.
#@Benjamin A. Hall,Judith P. Armitage,Mark S. P. Sansom
#t2011
#cPLoS Computational Biology
#index3372743
#% 
#!
  
#*A Switching Mechanism in Doxorubicin Bioactivation Can Be Exploited to Control Doxorubicin Toxicity.
#@Nnenna A. Finn,Harry W. Findley,Melissa L. Kemp
#t2011
#cPLoS Computational Biology
#index3371864
#% 
#!
  
#*Current Estimates for HIV-1 Production Imply Rapid Viral Clearance in Lymphoid Tissues.
#@Rob J. De Boer,Ruy M. Ribeiro,Alan S. Perelson
#t2010
#cPLoS Computational Biology
#index3372680
#% 
#!
  
#*A Hidden Feedback in Signaling Cascades Is Revealed.
#@Alejandra C. Ventura,Jacques-A. Sepulchre,Sofía D. Merajver
#t2008
#cPLoS Computational Biology
#index3371903
#% 
#!
  
#*Quantifying the Effects of Elastic Collisions and Non-Covalent Binding on Glutamate Receptor Trafficking in the Post-Synaptic Density.
#@Fidel Santamaría,Jossina Gonzalez,George J. Augustine,Sridhar Raghavachari
#t2010
#cPLoS Computational Biology
#index3372435
#% 
#!
  
#*Amplification of Asynchronous Inhibition-Mediated Synchronization by Feedback in Recurrent Networks.
#@Sashi Marella,Bard Ermentrout
#t2010
#cPLoS Computational Biology
#index3372115
#% 
#!
  
#*Topography of Extracellular Matrix Mediates Vascular Morphogenesis and Migration Speeds in Angiogenesis.
#@Amy L. Bauer,Trachette L. Jackson,Yi Jiang
#t2009
#cPLoS Computational Biology
#index3372547
#% 
#!
  
#*Geometrically Repatterned Immunological Synapses Uncover Formation Mechanisms.
#@Marc Thilo Figge,Michael Meyer-Hermann
#t2006
#cPLoS Computational Biology
#index3372651
#% 
#!
  
#*Identifying Changes in Selective Constraints: Host Shifts in Influenza.
#@Asif U. Tamuri,Mario dos Reis,Alan J. Hay,Richard A. Goldstein
#t2009
#cPLoS Computational Biology
#index3372484
#% 
#!
  
#*Vertical Binocular Disparity is Encoded Implicitly within a Model Neuronal Population Tuned to Horizontal Disparity and Orientation.
#@Jenny C. A. Read
#t2010
#cPLoS Computational Biology
#index3372750
#% 
#!
  
#*Self-Assembly and DNA Binding of the Blocking Factor in X Chromosome Inactivation.
#@Mario Nicodemi,Antonella Prisco
#t2007
#cPLoS Computational Biology
#index3372227
#% 
#!
  
#*Exhaustive Sampling of Docking Poses Reveals Binding Hypotheses for Propafenone Type Inhibitors of P-Glycoprotein.
#@Freya Klepsch,Peter Chiba,Gerhard F. Ecker
#t2011
#cPLoS Computational Biology
#index3371942
#% 
#!
  
#*Revisited: How Metabolism Can Be Understood from Enzyme Kinetics.
#@Karen van Eunen,José A. L. Kiewiet,Hans V. Westerhoff,Barbara M. Bakker
#t2012
#cPLoS Computational Biology
#index3372728
#% 
#!
  
#*PhyloGibbs-MP: Module Prediction and Discriminative Motif-Finding by Gibbs Sampling.
#@Rahul Siddharthan
#t2008
#cPLoS Computational Biology
#index3372719
#% 
#!
  
#*Mitigation Strategies for Pandemic Influenza A: Balancing Conflicting Policy Objectives.
#@T. Déirdre Hollingsworth,Don Klinkenberg,Hans Heesterbeek,Roy M. Anderson
#t2011
#cPLoS Computational Biology
#index3372833
#% 
#!
  
#*Modeling Mechanisms of In Vivo Variability in Methotrexate Accumulation and Folate Pathway Inhibition in Acute Lymphoblastic Leukemia Cells.
#@John C. Panetta,Alex Sparreboom,Ching-Hon Pui,Mary Relling,William E. Evans
#t2010
#cPLoS Computational Biology
#index3372453
#% 
#!
  
#*Neuromotor Noise, Error Tolerance and Velocity-Dependent Costs in Skilled Performance.
#@Dagmar Sternad,Masaki O. Abe,Xiaogang Hu,Hermann Müller
#t2011
#cPLoS Computational Biology
#index3372105
#% 
#!
  
#*Evolution: Lineage- Specific Adaptations in Homologs of Eukaryotic Sel1-Like Genes.
#@Masako Ogura,J. Christian Perez,Peer R. E. Mittl,Hae-Kyung Lee,Geidrius Dailide,Shumin Tan,Yoshiyuki Ito,Ousman Secka,Daiva Dailidiene,Kalyani Putty,Douglas E. Berg,Awdhesh Kalia
#t2007
#cPLoS Computational Biology
#index3372848
#% 
#!
  
#*LTS and FS Inhibitory Interneurons, Short-Term Synaptic Plasticity, and Cortical Circuit Dynamics.
#@Itai Hayut,Erika E. Fanselow,Barry W. Connors,David Golomb
#t2011
#cPLoS Computational Biology
#index3372369
#% 
#!
  
#*Determinants of Sexual Network Structure and Their Impact on Cumulative Network Measures.
#@Boris V. Schmid,Mirjam Kretzschmar
#t2012
#cPLoS Computational Biology
#index3372764
#% 
#!
  
#*Neuronal Firing Sensitivity to Morphologic and Active Membrane Parameters.
#@Christina M. Weaver,Susan L. Wearne
#t2008
#cPLoS Computational Biology
#index3372558
#% 
#!
  
#*Modeling Structure-Function Relationships in Synthetic DNA Sequences using Attribute Grammars.
#@Yizhi Cai,Matthew W. Lux,Laura Adam,Jean Peccoud
#t2009
#cPLoS Computational Biology
#index3372613
#% 
#!
  
#*Power-Law Input-Output Transfer Functions Explain the Contrast-Response and Tuning Properties of Neurons in Visual Cortex.
#@Erez Persi,David Hansel,Lionel Nowak,Pascal Barone,Carl van Vreeswijk
#t2011
#cPLoS Computational Biology
#index3372163
#% 
#!
  
#*Gene Expression Network Reconstruction by Convex Feature Selection when Incorporating Genetic Perturbations.
#@Benjamin A. Logsdon,Jason G. Mezey
#t2010
#cPLoS Computational Biology
#index3372012
#% 
#!
  
#*An Analytically Solvable Model for Rapid Evolution of Modular Structure.
#@Nadav Kashtan,Avi E. Mayo,Tomer Kalisky,Uri Alon
#t2009
#cPLoS Computational Biology
#index3372446
#% 
#!
  
#*Infectious Disease Modeling of Social Contagion in Networks.
#@Alison L. Hill,David G. Rand,Martin A. Nowak,Nicholas A. Christakis
#t2010
#cPLoS Computational Biology
#index3372621
#% 
#!
  
#*A Model of Cardiovascular Disease Giving a Plausible Mechanism for the Effect of Fractionated Low-Dose Ionizing Radiation Exposure.
#@Mark P. Little,Anna Gola,Ioanna Tzoulaki
#t2009
#cPLoS Computational Biology
#index3372135
#% 
#!
  
#*Vulnerabilities in the Tau Network and the Role of Ultrasensitive Points in Tau Pathophysiology.
#@Theresa M. Yuraszeck,Pierre Neveu,Maria Rodriguez-Fernandez,Anne Robinson,Kenneth S. Kosik,Francis J. Doyle III
#t2010
#cPLoS Computational Biology
#index3372324
#% 
#!
  
#*Persistent Activity in Neural Networks with Dynamic Synapses.
#@Omri Barak,Misha Tsodyks
#t2007
#cPLoS Computational Biology
#index3372784
#% 
#!
  
#*Social Interaction, Noise and Antibiotic-Mediated Switches in the Intestinal Microbiota.
#@Vanni Bucci,Serena Bradde,Giulio Biroli,Joao B. Xavier
#t2012
#cPLoS Computational Biology
#index3372755
#% 
#!
  
#*Computational Model of Membrane Fission Catalyzed by ESCRT-III.
#@Gur Fabrikant,Suman Lata,James D. Riches,John A. G. Briggs,Winfried Weissenhorn,Michael M. Kozlov
#t2009
#cPLoS Computational Biology
#index3372051
#% 
#!
  
#*From Nonspecific DNA-Protein Encounter Complexes to the Prediction of DNA-Protein Interactions.
#@Mu Gao,Jeffrey Skolnick
#t2009
#cPLoS Computational Biology
#index3372761
#% 
#!
  
#*Transcriptional Profiling of the Dose Response: A More Powerful Approach for Characterizing Drug Activities.
#@Rui-Ru Ji,Heshani de Silva,Yisheng Jin,Robert E. Bruccoleri,Jian Cao,Aiqing He,Wenjun Huang,Paul S. Kayne,Isaac Neuhaus,Karl-Heinz Ott,Becky Penhallow,Mark I. Cockett,Michael G. Neubauer,Nathan O. Siemers,Petra Ross-MacDonald
#t2009
#cPLoS Computational Biology
#index3372629
#% 
#!
  
#*Structured Pathway across the Transition State for Peptide Folding Revealed by Molecular Dynamics Simulations.
#@Lipi Thukral,Isabella Daidone,Jeremy C. Smith
#t2011
#cPLoS Computational Biology
#index3372341
#% 
#!
  
#*From Functional Genomics to Functional Immunomics: New Challenges, Old Problems, Big Rewards.
#@Ulisses M. Braga-Neto,Ernesto T. A. Marques Jr.
#t2006
#cPLoS Computational Biology
#index3372278
#% 
#!
  
#*Polymorphism Data Can Reveal the Origin of Species Abundance Statistics.
#@Yosef E. Maruvka,Nadav M. Shnerb
#t2009
#cPLoS Computational Biology
#index3372090
#% 
#!
  
#*CAERUS: Predicting CAncER oUtcomeS Using Relationship between Protein Structural Information, Protein Networks, Gene Expression Data, and Mutation Data.
#@Kelvin Xi Zhang,B. F. Francis Ouellette
#t2011
#cPLoS Computational Biology
#index3372240
#% 
#!
  
#*Incremental Mutual Information: A New Method for Characterizing the Strength and Dynamics of Connections in Neuronal Circuits.
#@Abhinav Singh,Nicholas A. Lesica
#t2010
#cPLoS Computational Biology
#index3371968
#% 
#!
  
#*Efficient Sparse Coding in Early Sensory Processing: Lessons from Signal Recovery.
#@András Lörincz,Zsolt Palotai,Gábor Szirtes
#t2012
#cPLoS Computational Biology
#index3372010
#% 
#!
  
#*Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States.
#@Yonatan Bilu,Tomer Shlomi,Naama Barkai,Eytan Ruppin
#t2006
#cPLoS Computational Biology
#index3371933
#% 
#!
  
#*Correction: Computational Model Explains High Activity and Rapid Cycling of Rho GTPases within Protein Complexes.
#@Andrew B. Goryachev,Alexandra V. Pokhilko
#t2007
#cPLoS Computational Biology
#index3371910
#% 
#!
  
#*Similarity Queries for Temporal Toxicogenomic Expression Profiles.
#@Adam A. Smith,Aaron L. Vollrath,Christopher A. Bradfield,Mark Craven
#t2008
#cPLoS Computational Biology
#index3372038
#% 
#!
  
#*HIV-1 Subtype B Protease and Reverse Transcriptase Amino Acid Covariation.
#@Soo-Yon Rhee,Tommy F. Liu,Susan P. Holmes,Robert W. Shafer
#t2007
#cPLoS Computational Biology
#index3371939
#% 
#!
  
#*Drug-Class Specific Impact of Antivirals on the Reproductive Capacity of HIV.
#@Max von Kleist,Stephan Menz,Wilhelm Huisinga
#t2010
#cPLoS Computational Biology
#index3371991
#% 
#!
  
#*The Presence of VEGF Receptors on the Luminal Surface of Endothelial Cells Affects VEGF Distribution and VEGF Signaling.
#@Marianne O. Stefanini,Florence T. H. Wu,Feilim Mac Gabhann,Aleksander S. Popel
#t2009
#cPLoS Computational Biology
#index3372288
#% 
#!
  
#*Independent Component Analysis in Spiking Neurons.
#@Cristina Savin,Prashant Joshi,Jochen Triesch
#t2010
#cPLoS Computational Biology
#index3372568
#% 
#!
  
#*A Comprehensive, Quantitative, and Genome-Wide Model of Translation.
#@Marlena Siwiak,Piotr Zielenkiewicz
#t2010
#cPLoS Computational Biology
#index3371995
#% 
#!
  
#*Optimal Control Predicts Human Performance on Objects with Internal Degrees of Freedom.
#@Arne J. Nagengast,Daniel A. Braun,Daniel M. Wolpert
#t2009
#cPLoS Computational Biology
#index3372565
#% 
#!
  
#*Assessing the Nature of Lipid Raft Membranes.
#@Perttu S. Niemelä,Samuli Ollila,Marja T. Hyvönen,Mikko Karttunen,Ilpo Vattulainen
#t2007
#cPLoS Computational Biology
#index3372428
#% 
#!
  
#*Integrating Quantitative Knowledge into a Qualitative Gene Regulatory Network.
#@Jérémie Bourdon,Damien Eveillard,Anne Siegel
#t2011
#cPLoS Computational Biology
#index3372489
#% 
#!
  
#*Natural Selection on Functional Modules, a Genome-Wide Analysis.
#@François Serra,Leonardo Arbiza,Joaquín Dopazo,Hernán Dopazo
#t2011
#cPLoS Computational Biology
#index3372687
#% 
#!
  
#*Rhythmic Dynamics and Synchronization via Dimensionality Reduction: Application to Human Gait.
#@Jie Zhang,Kai Zhang,Jianfeng Feng,Michael Small
#t2010
#cPLoS Computational Biology
#index3372499
#% 
#!
  
#*Inferring Binding Energies from Selected Binding Sites.
#@Yue Zhao,David Granas,Gary D. Stormo
#t2009
#cPLoS Computational Biology
#index3372351
#% 
#!
  
#*Flux Balance Analysis of Mycolic Acid Pathway: Targets for Anti-Tubercular Drugs.
#@Karthik Raman,Preethi Rajagopalan,Nagasuma Chandra
#t2005
#cPLoS Computational Biology
#index3371855
#% 
#!
  
#*A Neurocomputational Model of Stimulus-Specific Adaptation to Oddball and Markov Sequences.
#@Robert Mill,Martin Coath,Thomas Wennekers,Susan L. Denham
#t2011
#cPLoS Computational Biology
#index3372662
#% 
#!
  
#*Oscillatory Regulation of Hes1: Discrete Stochastic Delay Modelling and Simulation.
#@Manuel Barrio,Kevin Burrage,André Leier,Tianhai Tian
#t2006
#cPLoS Computational Biology
#index3372235
#% 
#!
  
#*Brain Rhythms Reveal a Hierarchical Network Organization.
#@G. Karl Steinke,Roberto F. Galán
#t2011
#cPLoS Computational Biology
#index3372705
#% 
#!
  
#*Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage.
#@Oliver Sander,Tobias Sing,Ingolf Sommer,Andrew J. Low,Peter K. Cheung,P. Richard Harrigan,Thomas Lengauer,Francisco S. Domingues
#t2007
#cPLoS Computational Biology
#index3372005
#% 
#!
  
#*Lysine120 Interactions with p53 Response Elements can Allosterically Direct p53 Organization.
#@Yongping Pan,Ruth Nussinov
#t2010
#cPLoS Computational Biology
#index3371960
#% 
#!
  
#*A Model of Ant Route Navigation Driven by Scene Familiarity.
#@Bart Baddeley,Paul Graham,Philip Husbands,Andrew Philippides
#t2012
#cPLoS Computational Biology
#index3372531
#% 
#!
  
#*One Year of .
#@Philip E. Bourne
#t2006
#cPLoS Computational Biology
#index3372061
#% 
#!
  
#*Early Warning Signals for Critical Transitions: A Generalized Modeling Approach.
#@Steven J. Lade,Thilo Gross
#t2012
#cPLoS Computational Biology
#index3372153
#% 
#!
  
#*Mechanism of Action of Cyclophilin A Explored by Metadynamics Simulations.
#@Vanessa Leone,Gianluca Lattanzi,Carla Molteni,Paolo Carloni
#t2009
#cPLoS Computational Biology
#index3372207
#% 
#!
  
#*Gene Expression of Neurons Carries Information on Their Synaptic Connectivity.
#@Alon Kaufman,Gideon Dror,Isaac Meilijson,Eytan Ruppin
#t2006
#cPLoS Computational Biology
#index3372642
#% 
#!
  
#*Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix.
#@Jakob Hull Havgaard,Elfar Torarinsson,Jan Gorodkin
#t2007
#cPLoS Computational Biology
#index3371996
#% 
#!
  
#*Coping with Viral Diversity in HIV Vaccine Design.
#@David C. Nickle,Morgane Rolland,Mark A. Jensen,Sergei L. Kosakovsky Pond,Wenjie Deng,Mark Seligman,David Heckerman,James I. Mullins,Nebojsa Jojic
#t2007
#cPLoS Computational Biology
#index3372218
#% 
#!
  
#*Balancing Feed-Forward Excitation and Inhibition via Hebbian Inhibitory Synaptic Plasticity.
#@Yotam Luz,Maoz Shamir
#t2012
#cPLoS Computational Biology
#index3372669
#% 
#!
  
#*Tag-Trigger-Consolidation: A Model of Early and Late Long-Term-Potentiation and Depression.
#@Claudia Clopath,Lorric Ziegler,Eleni Vasilaki,Lars Büsing,Wulfram Gerstner
#t2008
#cPLoS Computational Biology
#index3372567
#% 
#!
  
#*Translating Clinical Findings into Knowledge in Drug Safety Evaluation - Drug Induced Liver Injury Prediction System (DILIps).
#@Zhichao Liu,Qiang Shi,Don Ding,Reagan Kelly,Hong Fang,Weida Tong
#t2011
#cPLoS Computational Biology
#index3372408
#% 
#!
  
#*A Digital Atlas to Characterize the Mouse Brain Transcriptome.
#@James P. Carson,Tao Ju,Hui-Chen Lu,Christina Thaller,Mei Xu,Sarah L. Pallas,Michael C. Crair,Joe D. Warren,Wah Chiu,Gregor Eichele
#t2005
#cPLoS Computational Biology
#index3372595
#% 
#!
  
#*Identification and Analysis of Genes and Pseudogenes within Duplicated Regions in the Human and Mouse Genomes.
#@Mikita Suyama,Eoghan D. Harrington,Peer Bork,David Torrents
#t2006
#cPLoS Computational Biology
#index3372588
#% 
#!
  
#*Analyzing Short-Term Noise Dependencies of Spike-Counts in Macaque Prefrontal Cortex Using Copulas and the Flashlight Transformation.
#@Arno Onken,Steffen Grünewälder,Matthias H. J. Munk,Klaus Obermayer
#t2009
#cPLoS Computational Biology
#index3371897
#% 
#!
  
#*Benchmarking Ontologies: Bigger or Better?
#@Lixia Yao,Anna Divoli,Ilya Mayzus,James A. Evans,Andrey Rzhetsky
#t2011
#cPLoS Computational Biology
#index3371912
#% 
#!
  
#*The Efficiency of the Human CD8+ T Cell Response: How Should We Quantify It, What Determines It, and Does It Matter?
#@Marjet Elemans,Nafisa-Katrin Seich al Basatena,Becca Asquith
#t2012
#cPLoS Computational Biology
#index3371850
#% 
#!
  
#*Developmental Maturation of Dynamic Causal Control Signals in Higher-Order Cognition: A Neurocognitive Network Model.
#@Kaustubh Supekar,Vinod Menon
#t2012
#cPLoS Computational Biology
#index3372295
#% 
#!
  
#*Using Network Component Analysis to Dissect Regulatory Networks Mediated by Transcription Factors in Yeast.
#@Chun Ye,Simon J. Galbraith,James C. Liao,Eleazar Eskin
#t2009
#cPLoS Computational Biology
#index3372698
#% 
#!
  
#*A Quantitative Model of Transcriptional Regulation Reveals the Influence of Binding Location on Expression.
#@Kenzie D. MacIsaac,Kinyui A. Lo,William Gordon,Shmulik Motola,Tali Mazor,Ernest Fraenkel
#t2010
#cPLoS Computational Biology
#index3372052
#% 
#!
  
#*Mathematical Model of Viral Kinetics In Vitro Estimates the Number of E2-CD81 Complexes Necessary for Hepatitis C Virus Entry.
#@Pranesh Padmanabhan,Narendra M. Dixit
#t2011
#cPLoS Computational Biology
#index3371840
#% 
#!
  
#*On the Zwitterionic Nature of Gas-Phase Peptides and Protein Ions.
#@Roberto Marchese,Rita Grandori,Paolo Carloni,Simone Raugei
#t2010
#cPLoS Computational Biology
#index3372283
#% 
#!
  
#*A New Integrated Variable Based on Thermometry, Actimetry and Body Position (TAP) to Evaluate Circadian System Status in Humans.
#@Elisabet Ortiz-Tudela,Antonio Martinez-Nicolas,Manuel Campos,María Ángeles Rol,Juan Antonio Madrid
#t2010
#cPLoS Computational Biology
#index3372725
#% 
#!
  
#*Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm.
#@Ignacio E. Sánchez,Pedro Beltrão,Francois Stricher,Joost Schymkowitz,Jesper Ferkinghoff-Borg,Frederic Rousseau,Luis Serrano
#t2008
#cPLoS Computational Biology
#index3372047
#% 
#!
  
#*Monkeys and Humans Share a Common Computation for Face/Voice Integration.
#@Chandramouli Chandrasekaran,Luis Lemus,Andrea Trubanova,Matthias Gondan,Asif A. Ghazanfar
#t2011
#cPLoS Computational Biology
#index3372576
#% 
#!
  
#*Dynamical and Structural Analysis of a T Cell Survival Network Identifies Novel Candidate Therapeutic Targets for Large Granular Lymphocyte Leukemia.
#@Assieh Saadatpour,Rui-Sheng Wang,Aijun Liao,Xin Liu,Thomas P. Loughran,István Albert,Réka Albert
#t2011
#cPLoS Computational Biology
#index3371906
#% 
#!
  
#*Identifying the Rules of Engagement Enabling Leukocyte Rolling, Activation, and Adhesion.
#@Jonathan Tang,C. Anthony Hunt
#t2010
#cPLoS Computational Biology
#index3371953
#% 
#!
  
#*Feedforward Inhibition and Synaptic Scaling - Two Sides of the Same Coin?
#@Christian Keck,Cristina Savin,Jörg Lücke
#t2012
#cPLoS Computational Biology
#index3372322
#% 
#!
  
#*Identification of Mechanosensitive Genes during Embryonic Bone Formation.
#@Niamh C. Nowlan,Patrick J. Prendergast,Paula Murphy
#t2008
#cPLoS Computational Biology
#index3372273
#% 
#!
  
#*The Origins of Specificity in Polyketide Synthase Protein Interactions.
#@Mukund Thattai,Yoram Burak,Boris I. Shraiman
#t2007
#cPLoS Computational Biology
#index3372624
#% 
#!
  
#*Mean-Fields and Neural Masses.
#@Karl J. Friston
#t2008
#cPLoS Computational Biology
#index3372502
#% 
#!
  
#*Mathematical Model of a Cell Size Checkpoint.
#@Marco Vilela,Jeffrey J. Morgan,Paul A. Lindahl
#t2010
#cPLoS Computational Biology
#index3372708
#% 
#!
  
#*Knots: Attractive Places with High Path Tortuosity in Mouse Open Field Exploration.
#@Anna Dvorkin,Henry Szechtman,Ilan Golani
#t2010
#cPLoS Computational Biology
#index3372222
#% 
#!
  
#*An Open Forum for Computational Biology.
#@Michael Gribskov
#t2005
#cPLoS Computational Biology
#index3372126
#% 
#!
  
#*Strong Inference for Systems Biology.
#@Daniel A. Beard,Martin J. Kushmerick
#t2009
#cPLoS Computational Biology
#index3372850
#% 
#!
  
#*Conformational Sampling and Nucleotide-Dependent Transitions of the GroEL Subunit Probed by Unbiased Molecular Dynamics Simulations.
#@Lars Skjaerven,Barry J. Grant,Arturo Muga,Knut Teigen,James Andrew McCammon,Nathalie Reuter,Aurora Martinez
#t2011
#cPLoS Computational Biology
#index3372540
#% 
#!
  
#*Empirical Multiscale Networks of Cellular Regulation.
#@Benjamin de Bivort,Sui Huang,Yaneer Bar-Yam
#t2007
#cPLoS Computational Biology
#index3372557
#% 
#!
  
#*Detection of Alpha-Rod Protein Repeats Using a Neural Network and Application to Huntingtin.
#@Gareth A. Palidwor,Sergey Shcherbinin,Matthew R. Huska,Tamas Rasko,Ulrich Stelzl,Anup Arumughan,Raphaele Foulle,Pablo Porras,Luis Sánchez-Pulido,Erich E. Wanker,Miguel A. Andrade-Navarro
#t2009
#cPLoS Computational Biology
#index3372379
#% 
#!
  
#*A Generalized Framework for Quantifying the Dynamics of EEG Event-Related Desynchronization.
#@Steven Lemm,Klaus-Robert Müller,Gabriel Curio
#t2009
#cPLoS Computational Biology
#index3372360
#% 
#!
  
#*New Insights into the Genetic Control of Gene Expression using a Bayesian Multi-tissue Approach.
#@Enrico Petretto,Leonardo Bottolo,Sarah R. Langley,Matthias Heinig,Chris McDermott-Roe,Rizwan Sarwar,Michal Pravenec,Norbert Hübner,Timothy J. Aitman,Stuart A. Cook,Sylvia Richardson
#t2010
#cPLoS Computational Biology
#index3372117
#% 
#!
  
#*Poisson-Nernst-Planck Models of Nonequilibrium Ion Electrodiffusion through a Protegrin Transmembrane Pore.
#@Dan S. Bolintineanu,Abdallah Sayyed-Ahmad,H. Ted Davis,Yiannis N. Kaznessis
#t2009
#cPLoS Computational Biology
#index3372151
#% 
#!
  
#*Recognizing Sequences of Sequences.
#@Stefan J. Kiebel,Katharina von Kriegstein,Jean Daunizeau,Karl J. Friston
#t2009
#cPLoS Computational Biology
#index3372329
#% 
#!
  
#*Dopamine, Affordance and Active Inference.
#@Karl J. Friston,Tamara Shiner,Thomas FitzGerald,Joseph M. Galea,Rick Adams,Harriet Brown,Raymond J. Dolan,Rosalyn J. Moran,Klaas Enno Stephan,Sven Bestmann
#t2012
#cPLoS Computational Biology
#index3372530
#% 
#!
  
#*Ten Simple Rules for Editing Wikipedia.
#@Darren W. Logan,Massimo Sandal,Paul P. Gardner,Magnus Manske,Alex Bateman
#t2010
#cPLoS Computational Biology
#index3372839
#% 
#!
  
#*Modification of Gene Duplicability during the Evolution of Protein Interaction Network.
#@Matteo D'Antonio,Francesca Ciccarelli
#t2011
#cPLoS Computational Biology
#index3371990
#% 
#!
  
#*Analysis of a Splice Array Experiment Elucidates Roles of Chromatin Elongation Factor Spt4-5 in Splicing.
#@Yuanyuan Xiao,Yee Hwa Yang,Todd A. Burckin,Lily Shiue,Grant A. Hartzog,Mark R. Segal
#t2005
#cPLoS Computational Biology
#index3372304
#% 
#!
  
#*Combinatorial Pattern Discovery Approach for the Folding Trajectory Analysis of a -Hairpin.
#@Laxmi Parida,Ruhong Zhou
#t2005
#cPLoS Computational Biology
#index3372631
#% 
#!
  
#*Scientific Software Development Is Not an Oxymoron.
#@Susan M. Baxter,Steven W. Day,Jacquelyn S. Fetrow,Stephanie J. Reisinger
#t2006
#cPLoS Computational Biology
#index3372476
#% 
#!
  
#*Binding Leverage as a Molecular Basis for Allosteric Regulation.
#@Simon Mitternacht,Igor N. Berezovsky
#t2011
#cPLoS Computational Biology
#index3372398
#% 
#!
  
#*Speed/Accuracy Trade-Off between the Habitual and the Goal-Directed Processes.
#@Mohammad Mehdi Keramati,Amir Dezfouli,Payam Piray
#t2011
#cPLoS Computational Biology
#index3372718
#% 
#!
  
#*G-Quadruplex DNA Sequences Are Evolutionarily Conserved and Associated with Distinct Genomic Features in .
#@John A. Capra,Katrin Paeschke,Mona Singh,Virginia A. Zakian
#t2010
#cPLoS Computational Biology
#index3372171
#% 
#!
  
#*Networks of High Mutual Information Define the Structural Proximity of Catalytic Sites: Implications for Catalytic Residue Identification.
#@Cristina Marino Buslje,Elin Teppa,Tomàs Di Domenico,José María Delfino,Morten Nielsen
#t2010
#cPLoS Computational Biology
#index3372187
#% 
#!
  
#*Quantitative Comparison of Catalytic Mechanisms and Overall Reactions in Convergently Evolved Enzymes: Implications for Classification of Enzyme Function.
#@Daniel E. Almonacid,Emmanuel R. Yera,John B. O. Mitchell,Patricia C. Babbitt
#t2010
#cPLoS Computational Biology
#index3371878
#% 
#!
  
#*Predicting the Receptive Range of Olfactory Receptors.
#@Rafi Haddad,Liran Carmel,Noam Sobel,David Harel
#t2008
#cPLoS Computational Biology
#index3372046
#% 
#!
  
#*Advanced Genomic Data Mining.
#@Xosé M. Fernández-Suarez,Ewan Birney
#t2008
#cPLoS Computational Biology
#index3372606
#% 
#!
  
#*Perceptual Learning via Modification of Cortical Top-Down Signals.
#@Roland Schäfer,Eleni Vasilaki,Walter Senn
#t2007
#cPLoS Computational Biology
#index3372189
#% 
#!
  
#*Superhelical Destabilization in Regulatory Regions of Stress Response Genes.
#@Huiquan Wang,Craig J. Benham
#t2008
#cPLoS Computational Biology
#index3372754
#% 
#!
  
#*Detection of Functional Modes in Protein Dynamics.
#@Jochen S. Hub,Bert L. de Groot
#t2009
#cPLoS Computational Biology
#index3372521
#% 
#!
  
#*Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants.
#@Jiang Du,Robert D. Bjornson,Zhengdong D. Zhang,Yong Kong,Michael Snyder,Mark B. Gerstein
#t2009
#cPLoS Computational Biology
#index3372314
#% 
#!
  
#*Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach.
#@Jing Tang,William P. Hanage,Christophe Fraser,Jukka Corander
#t2009
#cPLoS Computational Biology
#index3372812
#% 
#!
  
#*Interconversion of Functional Motions between Mesophilic and Thermophilic Adenylate Kinases.
#@Michael D. Daily,George N. Phillips Jr.,Qiang Cui
#t2011
#cPLoS Computational Biology
#index3371940
#% 
#!
  
#*Protein Meta-Functional Signatures from Combining Sequence, Structure, Evolution, and Amino Acid Property Information.
#@Kai Wang,Jeremy A. Horst,Gong Cheng,David C. Nickle,Ram Samudrala
#t2008
#cPLoS Computational Biology
#index3372622
#% 
#!
  
#*Spatio-Temporal Credit Assignment in Neuronal Population Learning.
#@Johannes Friedrich,Robert Urbanczik,Walter Senn
#t2011
#cPLoS Computational Biology
#index3372707
#% 
#!
  
#*Image-Based Modeling Reveals Dynamic Redistribution of DNA Damage into Nuclear Sub-Domains.
#@Sylvain V. Costes,Artem L. Ponomarev,James L. Chen,David Nguyen,Francis A. Cucinotta,Mary Helen Barcellos-Hoff
#t2007
#cPLoS Computational Biology
#index3372080
#% 
#!
  
#*Targeting Neuropilin-1 to Inhibit VEGF Signaling in Cancer: Comparison of Therapeutic Approaches.
#@Feilim Mac Gabhann,Aleksander S. Popel
#t2006
#cPLoS Computational Biology
#index3372309
#% 
#!
  
#*Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems.
#@Marcus Kaiser,Claus C. Hilgetag
#t2006
#cPLoS Computational Biology
#index3372463
#% 
#!
  
#*Discovering Sequence Motifs with Arbitrary Insertions and Deletions.
#@Martin C. Frith,Neil F. W. Saunders,Bostjan Kobe,Timothy L. Bailey
#t2008
#cPLoS Computational Biology
#index3372433
#% 
#!
  
#*Interrogation of the Protein-Protein Interactions between Human BRCA2 BRC Repeats and RAD51 Reveals Atomistic Determinants of Affinity.
#@Daniel J. Cole,Eeson Rajendra,Meredith Roberts-Thomson,Bryn Hardwick,Grahame J. McKenzie,Mike C. Payne,Ashok R. Venkitaraman,Chris-Kriton Skylaris
#t2011
#cPLoS Computational Biology
#index3372727
#% 
#!
  
#*Mathematical Modelling of DNA Replication Reveals a Trade-off between Coherence of Origin Activation and Robustness against Rereplication.
#@Anneke Brümmer,Carlos Salazar,Vittoria Zinzalla,Lilia Alberghina,Thomas Höfer
#t2010
#cPLoS Computational Biology
#index3372096
#% 
#!
  
#*Functional Brain Networks Develop from a "Local to Distributed" Organization.
#@Damien A. Fair,Alexander L. Cohen,Jonathan D. Power,Nico U. F. Dosenbach,Jessica A. Church,Francis M. Miezin,Bradley L. Schlaggar,Steven E. Petersen
#t2009
#cPLoS Computational Biology
#index3372566
#% 
#!
  
#*Biomedical Discovery Acceleration, with Applications to Craniofacial Development.
#@Sonia M. Leach,Hannah J. Tipney,Weiguo Feng,William A. Baumgartner Jr.,Priyanka Kasliwal,Ronald P. Schuyler,Trevor Williams,Richard A. Spritz,Lawrence Hunter
#t2009
#cPLoS Computational Biology
#index3372738
#% 
#!
  
#*Extraction of Transcript Diversity from Scientific Literature.
#@Parantu K. Shah,Lars Juhl Jensen,Stéphanie Boué,Peer Bork
#t2005
#cPLoS Computational Biology
#index3372706
#% 
#!
  
#*Rise and Demise of Bioinformatics? Promise and Progress.
#@Christos A. Ouzounis
#t2012
#cPLoS Computational Biology
#index3372585
#% 
#!
  
#*The Modulation Transfer Function for Speech Intelligibility.
#@Taffeta M. Elliott,Frédéric E. Theunissen
#t2009
#cPLoS Computational Biology
#index3372466
#% 
#!
  
#*Natively Unstructured Loops Differ from Other Loops.
#@Avner Schlessinger,Jinfeng Liu,Burkhard Rost
#t2007
#cPLoS Computational Biology
#index3372277
#% 
#!
  
#*A Computational Approach to Analyze the Mechanism of Action of the Kinase Inhibitor Bafetinib.
#@Thomas R. Burkard,Uwe Rix,Florian P. Breitwieser,Giulio Superti-Furga,Jacques Colinge
#t2010
#cPLoS Computational Biology
#index3372550
#% 
#!
  
#*Building Disease-Specific Drug-Protein Connectivity Maps from Molecular Interaction Networks and PubMed Abstracts.
#@Jiao Li,Xiaoyan Zhu,Jake Yue Chen
#t2009
#cPLoS Computational Biology
#index3371883
#% 
#!
  
#*Molecular Machines in the Synapse: Overlapping Protein Sets Control Distinct Steps in Neurosecretion.
#@L. Niels Cornelisse,Evgeni Tsivtsivadze,Marieke Meijer,Tjeerd Dijkstra,Tom Heskes,Matthijs Verhage
#t2012
#cPLoS Computational Biology
#index3372744
#% 
#!
  
#*"Antedisciplinary" Science.
#@Sean R. Eddy
#t2005
#cPLoS Computational Biology
#index3372512
#% 
#!
  
#*Linking Changes in Epithelial Morphogenesis to Cancer Mutations Using Computational Modeling.
#@Katarzyna A. Rejniak,Shizhen E. Wang,Nicole S. Bryce,Hang Chang,Bahram Parvin,Jerome Jourquin,Lourdes Estrada,Joe W. Gray,Carlos L. Arteaga,Alissa M. Weaver,Vito Quaranta,Alexander R. A. Anderson
#t2010
#cPLoS Computational Biology
#index3372333
#% 
#!
  
#*A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes.
#@Yuzhen Ye,Thomas G. Doak
#t2009
#cPLoS Computational Biology
#index3372291
#% 
#!
  
#*Probing the Extent of Randomness in Protein Interaction Networks.
#@Joseph Ivanic,Anders Wallqvist,Jaques Reifman
#t2008
#cPLoS Computational Biology
#index3372257
#% 
#!
  
#*Modeling and Inferring Cleavage Patterns in Proliferating Epithelia.
#@Ankit Patel,William T. Gibson,Matthew C. Gibson,Radhika Nagpal
#t2009
#cPLoS Computational Biology
#index3372605
#% 
#!
  
#*Machine-Learning Approaches for Classifying Haplogroup from Y Chromosome STR Data.
#@Joseph Schlecht,Matthew E. Kaplan,Kobus Barnard,Tatiana Karafet,Michael F. Hammer,Nirav C. Merchant
#t2008
#cPLoS Computational Biology
#index3371856
#% 
#!
  
#*ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome.
#@Gary Hon,Bing Ren,Wei Wang
#t2008
#cPLoS Computational Biology
#index3372672
#% 
#!
  
#*Temperature Control of Fimbriation Circuit Switch in Uropathogenic : Quantitative Analysis via Automated Model Abstraction.
#@Hiroyuki Kuwahara,Chris J. Myers,Michael S. Samoilov
#t2010
#cPLoS Computational Biology
#index3372443
#% 
#!
  
#*Chemical Basis of Metabolic Network Organization.
#@Qiang Zhu,Tao Qin,Ying-Ying Jiang,Cong Ji,De-Xin Kong,Bin-Guang Ma,Hong-Yu Zhang
#t2011
#cPLoS Computational Biology
#index3372313
#% 
#!
  
#*Natural Selection Fails to Optimize Mutation Rates for Long-Term Adaptation on Rugged Fitness Landscapes.
#@Jeff Clune,Dusan Misevic,Charles Ofria,Richard E. Lenski,Santiago F. Elena,Rafael Sanjuán
#t2008
#cPLoS Computational Biology
#index3371977
#% 
#!
  
#*Deciphering Protein-Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners.
#@Benjamin A. Shoemaker,Anna R. Panchenko
#t2007
#cPLoS Computational Biology
#index3372343
#% 
#!
  
#*Semantic Similarity in Biomedical Ontologies.
#@Catia Pesquita,Daniel Faria,André O. Falcão,Phillip Lord,Francisco M. Couto
#t2009
#cPLoS Computational Biology
#index3372280
#% 
#!
  
#*Modeling the Violation of Reward Maximization and Invariance in Reinforcement Schedules.
#@Giancarlo La Camera,Barry J. Richmond
#t2008
#cPLoS Computational Biology
#index3372809
#% 
#!
  
#*Short-Term Memory Trace in Rapidly Adapting Synapses of Inferior Temporal Cortex.
#@Yasuko Sugase-Miyamoto,Zheng Liu,Matthew C. Wiener,Lance M. Optican,Barry J. Richmond
#t2008
#cPLoS Computational Biology
#index3372545
#% 
#!
  
#*Multiscale Coarse-Graining of the Protein Energy Landscape.
#@Ronald D. Hills Jr.,Lanyuan Lu,Gregory A. Voth
#t2010
#cPLoS Computational Biology
#index3372176
#% 
#!
  
#*Using Sequence-Specific Chemical and Structural Properties of DNA to Predict Transcription Factor Binding Sites.
#@Amy L. Bauer,William S. Hlavacek,Pat J. Unkefer,Fangping Mu
#t2010
#cPLoS Computational Biology
#index3372371
#% 
#!
  
#*Intrinsic Structural Disorder Confers Cellular Viability on Oncogenic Fusion Proteins.
#@Hédi Hegyi,László Buday,Peter Tompa
#t2009
#cPLoS Computational Biology
#index3372104
#% 
#!
  
#*Bayesian Integration and Non-Linear Feedback Control in a Full-Body Motor Task.
#@Ian H. Stevenson,Hugo L. Fernandes,Iris Vilares,Kunlin Wei,Konrad P. Körding
#t2009
#cPLoS Computational Biology
#index3372500
#% 
#!
  
#*Impact of Microscopic Motility on the Swimming Behavior of Parasites: Straighter Trypanosomes are More Directional.
#@Sravanti Uppaluri,Jan Nagler,Eric Stellamanns,Niko Heddergott,Stephan Herminghaus,Markus Engstler,Thomas Pfohl
#t2011
#cPLoS Computational Biology
#index3372144
#% 
#!
  
#*Interplay between Pleiotropy and Secondary Selection Determines Rise and Fall of Mutators in Stress Response.
#@Muyoung Heo,Eugene I. Shakhnovich
#t2010
#cPLoS Computational Biology
#index3371967
#% 
#!
  
#*Mechanisms of Magnetic Stimulation of Central Nervous System Neurons.
#@Tamar Pashut,Shuki Wolfus,Alex Friedman,Michal Lavidor,Izhar Bar-Gad,Yosef Yeshurun,Alon Korngreen
#t2011
#cPLoS Computational Biology
#index3372614
#% 
#!
  
#*Reverse Engineering of Oxygen Transport in the Lung: Adaptation to Changing Demands and Resources through Space-Filling Networks.
#@Chen Hou,Stefan Gheorghiu,Virginia H. Huxley,Peter Pfeifer
#t2010
#cPLoS Computational Biology
#index3372011
#% 
#!
  
#*Facilitated Variation: How Evolution Learns from Past Environments To Generalize to New Environments.
#@Merav Parter,Nadav Kashtan,Uri Alon
#t2008
#cPLoS Computational Biology
#index3372763
#% 
#!
  
#*Evolutionary Potential of a Duplicated Repressor-Operator Pair: Simulating Pathways Using Mutation Data.
#@Frank J. Poelwijk,Daniel J. Kiviet,Sander J. Tans
#t2006
#cPLoS Computational Biology
#index3372039
#% 
#!
  
#*BioStar: An Online Question & Answer Resource for the Bioinformatics Community.
#@Laurence D. Parnell,Pierre Lindenbaum,Khader Shameer,Giovanni Marco Dall'Olio,Daniel C. Swan,Lars Juhl Jensen,Simon J. Cockell,Brent S. Pedersen,Mary E. Mangan,Christopher A. Miller,Istvan Albert
#t2011
#cPLoS Computational Biology
#index3372830
#% 
#!
  
#*The What and Where of Adding Channel Noise to the Hodgkin-Huxley Equations.
#@Joshua H. Goldwyn,Eric Shea-Brown
#t2011
#cPLoS Computational Biology
#index3372352
#% 
#!
  
#*A Comparative Computer Simulation of Dendritic Morphology.
#@Duncan E. Donohue,Giorgio A. Ascoli
#t2008
#cPLoS Computational Biology
#index3372587
#% 
#!
  
#*Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures.
#@Alberto Pascual-García,David Abia,Angel R. Ortiz,Ugo Bastolla
#t2009
#cPLoS Computational Biology
#index3372302
#% 
#!
  
#*Radial and Spiral Stream Formation in Colonies.
#@Chuan Xue,Elena O. Budrene,Hans G. Othmer
#t2011
#cPLoS Computational Biology
#index3372123
#% 
#!
  
#*PSICIC: Noise and Asymmetry in Bacterial Division Revealed by Computational Image Analysis at Sub-Pixel Resolution.
#@Jonathan M. Guberman,Allison Fay,Jonathan Dworkin,Ned S. Wingreen,Zemer Gitai
#t2008
#cPLoS Computational Biology
#index3372688
#% 
#!
  
#*Interrogating and Predicting Tolerated Sequence Diversity in Protein Folds: Application to Trypsin Inhibitor-II Cystine-Knot Miniprotein.
#@Jennifer L. Lahti,Adam P. Silverman,Jennifer R. Cochran
#t2009
#cPLoS Computational Biology
#index3371962
#% 
#!
  
#*Modeling HER2 Effects on Cell Behavior from Mass Spectrometry Phosphotyrosine Data.
#@Neil Kumar,Alejandro Wolf-Yadlin,Forest M. White,Douglas A. Lauffenburger
#t2007
#cPLoS Computational Biology
#index3372132
#% 
#!
  
#*Use of Artificial Genomes in Assessing Methods for Atypical Gene Detection.
#@Rajeev K. Azad,Jeffrey G. Lawrence
#t2005
#cPLoS Computational Biology
#index3372316
#% 
#!
  
#*Dynamics of Mutant Cells in Hierarchical Organized Tissues.
#@Benjamin Werner,David Dingli,Tom Lenaerts,Jorge M. Pacheco,Arne Traulsen
#t2011
#cPLoS Computational Biology
#index3371884
#% 
#!
  
#*Predicting Shine-Dalgarno Sequence Locations Exposes Genome Annotation Errors.
#@J. Starmer,Anne-Marie Stomp,Mladen A. Vouk,Donald L. Bitzer
#t2006
#cPLoS Computational Biology
#index3372517
#% 
#!
  
#*Measured Dynamic Social Contact Patterns Explain the Spread of H1N1v Influenza.
#@Ken T. D. Eames,Natasha L. Tilston,Ellen Brooks-Pollock,W. John Edmunds
#t2012
#cPLoS Computational Biology
#index3371863
#% 
#!
  
#*Information Routing Driven by Background Chatter in a Signaling Network.
#@Núria Domedel-Puig,Pau Rué,Antonio J. Pons Rivero,Jordi García-Ojalvo
#t2011
#cPLoS Computational Biology
#index3372087
#% 
#!
  
#*The Role of Compensatory Mutations in the Emergence of Drug Resistance.
#@Andreas Handel,Roland R. Regoes,Rustom Antia
#t2006
#cPLoS Computational Biology
#index3372670
#% 
#!
  
#*Effects of Transcriptional Pausing on Gene Expression Dynamics.
#@Tiina Rajala,Antti Häkkinen,Shannon Healy,Olli Yli-Harja,Andre S. Ribeiro
#t2010
#cPLoS Computational Biology
#index3372118
#% 
#!
  
#*Protein-Protein Interactions Essentials: Key Concepts to Building and Analyzing Interactome Networks.
#@Javier De Las Rivas,Celia Fontanillo
#t2010
#cPLoS Computational Biology
#index3371904
#% 
#!
  
#*Structural Properties of the Neuronal Network.
#@Lav R. Varshney,Beth L. Chen,Eric Paniagua,David H. Hall,Dmitri B. Chklovskii
#t2011
#cPLoS Computational Biology
#index3372364
#% 
#!
  
#*Predicting Odor Pleasantness with an Electronic Nose.
#@Rafi Haddad,Abebe Medhanie,Yehudah Roth,David Harel,Noam Sobel
#t2010
#cPLoS Computational Biology
#index3372717
#% 
#!
  
#*On the Estimation of Intron Evolution.
#@Miklós Csürös
#t2006
#cPLoS Computational Biology
#index3372342
#% 
#!
  
#*A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology.
#@Jacob D. Durrant,Rommie E. Amaro,Lei Xie,Michael D. Urbaniak,Michael A. J. Ferguson,Antti Haapalainen,Zhijun Chen,Anne Marie Di Guilmi,Frank Wunder,Philip E. Bourne,James Andrew McCammon
#t2010
#cPLoS Computational Biology
#index3372776
#% 
#!
  
#*Tuning the Mammalian Circadian Clock: Robust Synergy of Two Loops.
#@Angela Relógio,Pål O. Westermark,Thomas Wallach,Katja Schellenberg,Achim Kramer,Hanspeter Herzel
#t2011
#cPLoS Computational Biology
#index3371919
#% 
#!
  
#*Automatic Annotation of Spatial Expression Patterns via Sparse Bayesian Factor Models.
#@Iulian Pruteanu-Malinici,Daniel L. Mace,Uwe Ohler
#t2011
#cPLoS Computational Biology
#index3372840
#% 
#!
  
#*Cooperation Prevails When Individuals Adjust Their Social Ties.
#@Francisco C. Santos,Jorge M. Pacheco,Tom Lenaerts
#t2006
#cPLoS Computational Biology
#index3372145
#% 
#!
  
#*Estimating the Stochastic Bifurcation Structure of Cellular Networks.
#@Carl Song,Hilary Phenix,Vida Abedi,Matthew Scott,Brian P. Ingalls,Mads Kærn,Theodore J. Perkins
#t2010
#cPLoS Computational Biology
#index3372031
#% 
#!
  
#*Effects of Macromolecular Crowding on Protein Conformational Changes.
#@Hao Dong,Sanbo Qin,Huan-Xiang Zhou
#t2010
#cPLoS Computational Biology
#index3372623
#% 
#!
  
#*Genome Trees from Conservation Profiles.
#@Fredj Tekaia,Edouard Yeramian
#t2005
#cPLoS Computational Biology
#index3371934
#% 
#!
  
#*Comprehensive Annotation of Bidirectional Promoters Identifies Co-Regulation among Breast and Ovarian Cancer Genes.
#@Mary Qu Yang,Laura M. Koehly,Laura Elnitski
#t2007
#cPLoS Computational Biology
#index3372406
#% 
#!
  
#*Model-Based Design of Growth-Attenuated Viruses.
#@Kwang-il Lim,Tobias Lang,Vy Lam,John Yin
#t2006
#cPLoS Computational Biology
#index3372444
#% 
#!
  
#*A Computational Analysis of ATP Binding of SV40 Large Tumor Antigen Helicase Motor.
#@Yemin Shi,Hanbin Liu,Dahai Gai,Jianpeng Ma,Xiaojiang S. Chen
#t2009
#cPLoS Computational Biology
#index3372024
#% 
#!
  
#*Electrotonic Signals along Intracellular Membranes May Interconnect Dendritic Spines and Nucleus.
#@Isaac Shemer,Björn Brinne,Jesper Tegnér,Sten Grillner
#t2008
#cPLoS Computational Biology
#index3372263
#% 
#!
  
#*Mouse Cognition-Related Behavior in the Open-Field: Emergence of Places of Attraction.
#@Anna Dvorkin,Yoav Benjamini,Ilan Golani
#t2008
#cPLoS Computational Biology
#index3372210
#% 
#!
  
#*Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH Analysis with Applications to .
#@Michael Seifert,André Gohr,Marc Strickert,Ivo Grosse
#t2012
#cPLoS Computational Biology
#index3372179
#% 
#!
  
#*Spatial Bistability Generates Expression Sharpness in the Embryo.
#@Francisco J. P. Lopes,Fernando M. C. Vieira,David M. Holloway,Paulo Mascarello Bisch,Alexander V. Spirov
#t2008
#cPLoS Computational Biology
#index3372221
#% 
#!
  
#*Broadband Criticality of Human Brain Network Synchronization.
#@Manfred G. Kitzbichler,Marie L. Smith,Søren R. Christensen,Ed Bullmore
#t2009
#cPLoS Computational Biology
#index3372138
#% 
#!
  
#*High Resolution Models of Transcription Factor-DNA Affinities Improve and Binding Predictions.
#@Phaedra Agius,Aaron Arvey,William Chang,William Stafford Noble,Christina S. Leslie
#t2010
#cPLoS Computational Biology
#index3372232
#% 
#!
  
#*The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species.
#@
#t2009
#cPLoS Computational Biology
#index3371932
#% 
#!
  
#*Robustness and Fragility in Immunosenescence.
#@Sean P. Stromberg,Jean Carlson
#t2006
#cPLoS Computational Biology
#index3372849
#% 
#!
  
#*Introduction to the Quantitative Analysis of Two-Dimensional Fluorescence Microscopy Images for Cell-Based Screening.
#@Vebjorn Ljosa,Anne E. Carpenter
#t2009
#cPLoS Computational Biology
#index3372735
#% 
#!
  
#*Animal Cell Differentiation Patterns Suppress Somatic Evolution.
#@John W. Pepper,Kathleen Sprouffske,Carlo C. Maley
#t2007
#cPLoS Computational Biology
#index3372427
#% 
#!
  
#*The Energy Landscape, Folding Pathways and the Kinetics of a Knotted Protein.
#@Michael C. Prentiss,David J. Wales,Peter G. Wolynes
#t2010
#cPLoS Computational Biology
#index3372596
#% 
#!
  
#*Signaling Logic of Activity-Triggered Dendritic Protein Synthesis: An mTOR Gate But Not a Feedback Switch.
#@Pragati Jain,Upinder S. Bhalla
#t2009
#cPLoS Computational Biology
#index3372089
#% 
#!
  
#*Persisting Viral Sequences Shape Microbial CRISPR-based Immunity.
#@Ariel D. Weinberger,Christine L. Sun,Mateusz M. Plucinski,Vincent J. Denef,Brian C. Thomas,Philippe Horvath,Rodolphe Barrangou,Michael S. Gilmore,Wayne M. Getz,Jillian F. Banfield
#t2012
#cPLoS Computational Biology
#index3372067
#% 
#!
  
#*Hypertrophy and/or Hyperplasia: Dynamics of Adipose Tissue Growth.
#@Junghyo Jo,Oksana Gavrilova,Stephanie Pack,William Jou,Shawn Mullen,Anne E. Sumner,Samuel W. Cushman,Vipul Periwal
#t2009
#cPLoS Computational Biology
#index3372095
#% 
#!
  
#*Identifying Cognate Binding Pairs among a Large Set of Paralogs: The Case of PE/PPE Proteins of .
#@Robert Riley,Matteo Pellegrini,David Eisenberg
#t2008
#cPLoS Computational Biology
#index3372438
#% 
#!
  
#*A New Principle for Information Storage in an Enzymatic Pathway Model.
#@Bruno Delord,Hugues Berry,Emmanuel Guigon,Stéphane Genet
#t2007
#cPLoS Computational Biology
#index3372308
#% 
#!
  
#*Neighbor-Dependent Ramachandran Probability Distributions of Amino Acids Developed from a Hierarchical Dirichlet Process Model.
#@Daniel Ting,Guoli Wang,Maxim V. Shapovalov,Rajib Mitra,Michael I. Jordan,Roland L. Dunbrack Jr.
#t2010
#cPLoS Computational Biology
#index3372726
#% 
#!
  
#*Endothelial Cell Capture of Heparin-Binding Growth Factors under Flow.
#@Bing Zhao,Changjiang Zhang,Kimberly Forsten-Williams,Jun Zhang,Michael Fannon
#t2010
#cPLoS Computational Biology
#index3371998
#% 
#!
  
#*A Macaque's-Eye View of Human Insertions and Deletions: Differences in Mechanisms.
#@Erika M. Kvikstad,Svitlana Tyekucheva,Francesca Chiaromonte,Kateryna D. Makova
#t2007
#cPLoS Computational Biology
#index3372152
#% 
#!
  
#*A Feature-Based Approach to Modeling Protein-DNA Interactions.
#@Eilon Sharon,Shai Lubliner,Eran Segal
#t2008
#cPLoS Computational Biology
#index3372054
#%558763
#%1032725
#%985079
#!
  
#*Allosteric Transitions of Supramolecular Systems Explored by Network Models: Application to Chaperonin GroEL.
#@Zheng Yang,Peter Májek,Ivet Bahar
#t2009
#cPLoS Computational Biology
#index3371913
#% 
#!
  
#*Time Scale Hierarchies in the Functional Organization of Complex Behaviors.
#@Dionysios Perdikis,Raoul Huys,Viktor K. Jirsa
#t2011
#cPLoS Computational Biology
#index3372570
#% 
#!
  
#*Integrating Extrinsic and Intrinsic Cues into a Minimal Model of Lineage Commitment for Hematopoietic Progenitors.
#@Santhosh Palani,Casim A. Sarkar
#t2009
#cPLoS Computational Biology
#index3372762
#% 
#!
  
#*Comprehensive DNA Signature Discovery and Validation.
#@Adam M. Phillippy,Jacquline A. Mason,Kunmi Ayanbule,Daniel D. Sommer,Elisa Taviani,Anwar Huq,Rita R. Colwell,Ivor T. Knight,Steven L. Salzberg
#t2007
#cPLoS Computational Biology
#index3371923
#% 
#!
  
#*Dynamic Phenotypic Clustering in Noisy Ecosystems.
#@Morten Ernebjerg,Roy Kishony
#t2011
#cPLoS Computational Biology
#index3372166
#% 
#!
  
#*Polar or Apolar - The Role of Polarity for Urea-Induced Protein Denaturation.
#@Martin C. Stumpe,Helmut Grubmüller
#t2008
#cPLoS Computational Biology
#index3372365
#% 
#!
  
#*Genome-Wide Analysis of Human Disease Alleles Reveals That Their Locations Are Correlated in Paralogous Proteins.
#@Mark Yandell,Barry Moore,Fidel Salas,Chris Mungall,Andrew MacBride,Charles White,Martin G. Reese
#t2008
#cPLoS Computational Biology
#index3372413
#% 
#!
  
#*A Stochastic Model for Microtubule Motors Describes the Cytoplasmic Transport of Human Adenovirus.
#@Mattia Gazzola,Christoph J. Burckhardt,Basil Bayati,Martin Engelke,Urs F. Greber,Petros Koumoutsakos
#t2009
#cPLoS Computational Biology
#index3372350
#% 
#!
  
#*Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data.
#@Dongjun Chung,Pei Fen Kuan,Bo Li,Rajendran Sanalkumar,Kun Liang,Emery H. Bresnick,Colin N. Dewey,Sündüz Keles
#t2011
#cPLoS Computational Biology
#index3372475
#% 
#!
  
#*A Combinatorial Approach to Detect Coevolved Amino Acid Networks in Protein Families of Variable Divergence.
#@Julie Baussand,Alessandra Carbone
#t2009
#cPLoS Computational Biology
#index3372441
#% 
#!
  
#*Intricate Knots in Proteins: Function and Evolution.
#@Peter Virnau,Leonid A. Mirny,Mehran Kardar
#t2006
#cPLoS Computational Biology
#index3372661
#% 
#!
  
#*Kinetics of Rhodopsin Deactivation and Its Role in Regulating Recovery and Reproducibility of Rod Photoresponse.
#@Giovanni Caruso,Paolo Bisegna,Leonardo Lenoci,Daniele Andreucci,Vsevolod V. Gurevich,Heidi E. Hamm,Emmanuele DiBenedetto
#t2010
#cPLoS Computational Biology
#index3371983
#% 
#!
  
#*Diffusion, Crowding & Protein Stability in a Dynamic Molecular Model of the Bacterial Cytoplasm.
#@Sean R. McGuffee,Adrian H. Elcock
#t2010
#cPLoS Computational Biology
#index3371976
#% 
#!
  
#*Exon Array Analysis of Head and Neck Cancers Identifies a Hypoxia Related Splice Variant of Associated with a Poor Prognosis.
#@Carla S. Möller-Levet,Guy N. J. Betts,Adrian L. Harris,Jarrod J. Homer,Catharine M. West,Crispin J. Miller
#t2009
#cPLoS Computational Biology
#index3372497
#% 
#!
  
#*Modeling Evolutionary Dynamics of Epigenetic Mutations in Hierarchically Organized Tumors.
#@Andrea Sottoriva,Louis Vermeulen,Simon Tavaré
#t2011
#cPLoS Computational Biology
#index3371849
#% 
#!
  
#*Dynamic Structure Formation of Peripheral Membrane Proteins.
#@Diana Morozova,Gernot Guigas,Matthias Weiss
#t2011
#cPLoS Computational Biology
#index3372632
#% 
#!
  
#*New Maximum Likelihood Estimators for Eukaryotic Intron Evolution.
#@Hung D. Nguyen,Maki Yoshihama,Naoya Kenmochi
#t2005
#cPLoS Computational Biology
#index3372577
#% 
#!
  
#*Animal Interactions and the Emergence of Territoriality.
#@Luca Giuggioli,Jonathan R. Potts,Stephen Harris
#t2011
#cPLoS Computational Biology
#index3372174
#% 
#!
  
#*Statistical Inference for Multi-Pathogen Systems.
#@Sourya Shrestha,Aaron A. King,Pejman Rohani
#t2011
#cPLoS Computational Biology
#index3372697
#% 
#!
  
#*Using Expression Profiles of Neurons To Identify Genes That Mediate Synaptic Connectivity.
#@Leehod Baruch,Shalev Itzkovitz,Michal Golan-Mashiach,Ehud Y. Shapiro,Eran Segal
#t2008
#cPLoS Computational Biology
#index3372357
#% 
#!
  
#*Individualization as Driving Force of Clustering Phenomena in Humans.
#@Michael Mäs,Andreas Flache,Dirk Helbing
#t2010
#cPLoS Computational Biology
#index3372385
#% 
#!
  
#*A Generalized Allosteric Mechanism for -Regulated Cyclic Nucleotide Binding Domains.
#@Alexandr P. Kornev,Susan S. Taylor,Lynn F. Ten Eyck
#t2008
#cPLoS Computational Biology
#index3372018
#% 
#!
  
#*Effects of Heterogeneous and Clustered Contact Patterns on Infectious Disease Dynamics.
#@Erik M. Volz,Joel C. Miller,Alison P. Galvani,Lauren Ancel Meyers
#t2011
#cPLoS Computational Biology
#index3372486
#% 
#!
  
#*A Third Approach to Gene Prediction Suggests Thousands of Additional Human Transcribed Regions.
#@Gustavo Glusman,Shizhen Qin,M. Raafat El-Gewely,Andrew F. Siegel,Jared C. Roach,Leroy E. Hood,Arian F. A. Smit
#t2006
#cPLoS Computational Biology
#index3372772
#% 
#!
  
#*A Probabilistic Model of RNA Conformational Space.
#@Jes Frellsen,Ida Moltke,Martin Thiim,Kanti V. Mardia,Jesper Ferkinghoff-Borg,Thomas Hamelryck
#t2009
#cPLoS Computational Biology
#index3372260
#% 
#!
  
#*Instantaneous Non-Linear Processing by Pulse-Coupled Threshold Units.
#@Moritz Helias,Moritz Deger,Stefan Rotter,Markus Diesmann
#t2010
#cPLoS Computational Biology
#index3372652
#% 
#!
  
#*CpG Island Mapping by Epigenome Prediction.
#@Christoph Bock,Jörn Walter,Martina Paulsen,Thomas Lengauer
#t2007
#cPLoS Computational Biology
#index3372641
#% 
#!
  
#*Podbat: A Novel Genomic Tool Reveals Swr1-Independent H2A.Z Incorporation at Gene Coding Sequences through Epigenetic Meta-Analysis.
#@Laia Sadeghi,Carolina Bonilla,Annelie Strålfors,Karl Ekwall,J. Peter Svensson
#t2011
#cPLoS Computational Biology
#index3372386
#% 
#!
  
#*Gene Expression Variability within and between Human Populations and Implications toward Disease Susceptibility.
#@Jingjing Li,Yu Liu,TaeHyung Kim,Renqiang Min,Zhaolei Zhang
#t2010
#cPLoS Computational Biology
#index3372679
#% 
#!
  
#*SNPdetector: A Software Tool for Sensitive and Accurate SNP Detection.
#@Jinghui Zhang,David A. Wheeler,Imtiaz Yakub,Sharon Wei,Raman Sood,William Rowe,Paul P. Liu,Richard A. Gibbs,Kenneth H. Buetow
#t2005
#cPLoS Computational Biology
#index3372124
#% 
#!
  
#*Mechanistic Basis of Branch-Site Selection in Filamentous Bacteria.
#@David M. Richards,Antje M. Hempel,Klas Flärdh,Mark J. Buttner,Martin Howard
#t2012
#cPLoS Computational Biology
#index3372224
#% 
#!
  
#*Steps in the Bacterial Flagellar Motor.
#@Thierry Mora,Howard Yu,Yoshiyuki Sowa,Ned S. Wingreen
#t2009
#cPLoS Computational Biology
#index3371997
#% 
#!
  
#*Population Structure Induces a Symmetry Breaking Favoring the Emergence of Cooperation.
#@Jorge M. Pacheco,Flávio L. Pinheiro,Francisco C. Santos
#t2009
#cPLoS Computational Biology
#index3372586
#% 
#!
  
#*Systematic Inference of Copy-Number Genotypes from Personal Genome Sequencing Data Reveals Extensive Olfactory Receptor Gene Content Diversity.
#@Sebastian M. Waszak,Yehudit Hasin,Thomas Zichner,Tsviya Olender,Ifat Keydar,Miriam Khen,Adrian M. Stütz,Andreas Schlattl,Doron Lancet,Jan O. Korbel
#t2010
#cPLoS Computational Biology
#index3371877
#% 
#!
  
#*Computational Investigation of the Changing Patterns of Subtype Specific NMDA Receptor Activation during Physiological Glutamatergic Neurotransmission.
#@Pallab Singh,Adam J. Hockenberry,Vineet R. Tiruvadi,David F. Meaney
#t2011
#cPLoS Computational Biology
#index3371834
#% 
#!
  
#*Correction: Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays.
#@Rameen Beroukhim,Ming Lin,Yuhyun Park,Ke Hao,Xiaojun Zhao,Levi A. Garraway,Edward A. Fox,Ephraim P. Hochberg,Ingo K. Mellinghoff,Matthias D. Hofer,Aurelien Descazeaud,Mark A. Rubin,Matthew Meyerson,Wing Hung Wong,William R. Sellers,Cheng Li
#t2007
#cPLoS Computational Biology
#index3372201
#% 
#!
  
#*Transcriptional Dynamics of the Embryonic Stem Cell Switch.
#@Vijay Chickarmane,Carl Troein,Ulrike A. Nuber,Herbert M. Sauro,Carsten Peterson
#t2006
#cPLoS Computational Biology
#index3371954
#% 
#!
  
#*Discovering Biological Progression Underlying Microarray Samples.
#@Peng Qiu,Andrew J. Gentles,Sylvia K. Plevritis
#t2011
#cPLoS Computational Biology
#index3372781
#% 
#!
  
#*Identification of Biochemical Network Modules Based on Shortest Retroactive Distances.
#@Gautham Vivek Sridharan,Soha Hassoun,Kyongbum Lee
#t2011
#cPLoS Computational Biology
#index3372827
#% 
#!
  
#*Structural Reorganisation and Potential Toxicity of Oligomeric Species Formed during the Assembly of Amyloid Fibrils.
#@Mookyung Cheon,Iksoo Chang,Sandipan Mohanty,Leila M. Luheshi,Christopher M. Dobson,Michele Vendruscolo,Giorgio Favrin
#t2007
#cPLoS Computational Biology
#index3372753
#% 
#!
  
#*The Genome: An Outsider's View.
#@Carl Zimmer
#t2006
#cPLoS Computational Biology
#index3371898
#% 
#!
  
#*Ten Simple Rules for Teaching Bioinformatics at the High School Level.
#@David Form,Fran Lewitter
#t2011
#cPLoS Computational Biology
#index3372060
#% 
#!
  
#*The Origin of Behavioral Bursts in Decision-Making Circuitry.
#@Amanda Sorribes,Beatriz G. Armendariz,Diego Lopez-Pigozzi,Cristina Murga,Gonzalo G. de Polavieja
#t2011
#cPLoS Computational Biology
#index3372667
#% 
#!
  
#*Increasing the Power to Detect Causal Associations by Combining Genotypic and Expression Data in Segregating Populations.
#@Jun Zhu,Matthew C. Wiener,Chunsheng Zhang,Arthur Fridman,Eric Minch,Pek Y. Lum,Jeffrey R. Sachs,Eric E. Schadt
#t2007
#cPLoS Computational Biology
#index3372740
#% 
#!
  
#*An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope.
#@Art F. Y. Poon,Fraser I. Lewis,Sergei L. Kosakovsky Pond,Simon D. W. Frost
#t2007
#cPLoS Computational Biology
#index3372131
#% 
#!
  
#*The Voice of Bats: How Greater Mouse-eared Bats Recognize Individuals Based on Their Echolocation Calls.
#@Yossi Yovel,Mariana Laura Melcon,Matthias O. Franz,Annette Denzinger,Hans-Ulrich Schnitzler
#t2009
#cPLoS Computational Biology
#index3372696
#% 
#!
  
#*Identification of a Topological Characteristic Responsible for the Biological Robustness of Regulatory Networks.
#@Yangle Wu,Xiaomeng Zhang,Jianglei Yu,Qi Ouyang
#t2009
#cPLoS Computational Biology
#index3371876
#% 
#!
  
#*RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins.
#@Hilal Kazan,Debashish Ray,Esther T. Chan,Timothy R. Hughes,Quaid Morris
#t2010
#cPLoS Computational Biology
#index3371971
#% 
#!
  
#*Colocalization of Protein Kinase A with Adenylyl Cyclase Enhances Protein Kinase A Activity during Induction of Long-Lasting Long-Term-Potentiation.
#@Myungsook Kim,Alan Jung Park,Robbert Havekes,Andrew Chay,Leonardo Antonio Guercio,Rodrigo Freire Oliveira,Ted Abel,Kim T. Blackwell
#t2011
#cPLoS Computational Biology
#index3372129
#% 
#!
  
#*A Multi-Compartment Model for Interneurons in the Dorsal Lateral Geniculate Nucleus.
#@Geir Halnes,Sigita Augustinaite,Paul Heggelund,Gaute T. Einevoll,Michele Migliore
#t2011
#cPLoS Computational Biology
#index3372817
#% 
#!
  
#*A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies.
#@Oliver Stegle,Leopold Parts,Richard Durbin,John M. Winn
#t2010
#cPLoS Computational Biology
#index3372173
#% 
#!
  
#*Genome-Wide Association between Branch Point Properties and Alternative Splicing.
#@André Corvelo,Martina Hallegger,Christopher W. J. Smith,Eduardo Eyras
#t2010
#cPLoS Computational Biology
#index3372794
#% 
#!
  
#*Blockade of Neuronal α7-nAChR by α-Conotoxin ImI Explained by Computational Scanning and Energy Calculations.
#@Rilei Yu,David J. Craik,Quentin Kaas
#t2011
#cPLoS Computational Biology
#index3372542
#% 
#!
  
#*Role of Lipids in Spheroidal High Density Lipoproteins.
#@Timo Vuorela,Andrea Catte,Perttu S. Niemelä,Anette Hall,Marja T. Hyvönen,Siewert J. Marrink,Mikko Karttunen,Ilpo Vattulainen
#t2010
#cPLoS Computational Biology
#index3371961
#% 
#!
  
#*Signatures of Arithmetic Simplicity in Metabolic Network Architecture.
#@William J. Riehl,Paul L. Krapivsky,Sidney Redner,Daniel Segrè
#t2010
#cPLoS Computational Biology
#index3372832
#% 
#!
  
#*OptForce: An Optimization Procedure for Identifying All Genetic Manipulations Leading to Targeted Overproductions.
#@Sridhar Ranganathan,Patrick F. Suthers,Costas D. Maranas
#t2010
#cPLoS Computational Biology
#index3371857
#% 
#!
  
#*Spatiotemporal Expression Control Correlates with Intragenic Scaffold Matrix Attachment Regions (S/MARs) in .
#@Igor V. Tetko,Georg Haberer,Stephen Rudd,Blake C. Meyers,Hans-Werner Mewes,Klaus F. X. Mayer
#t2006
#cPLoS Computational Biology
#index3372081
#% 
#!
  
#*Quantification of Circadian Rhythms in Single Cells.
#@Pål O. Westermark,David K. Welsh,Hitoshi Okamura,Hanspeter Herzel
#t2009
#cPLoS Computational Biology
#index3371922
#% 
#!
  
#*Accurate Prediction of Peptide Binding Sites on Protein Surfaces.
#@Evangelia Petsalaki,Alexander Stark,Eduardo Garcia Urdiales,Robert B. Russell
#t2009
#cPLoS Computational Biology
#index3372004
#% 
#!
  
#*Polyamine Sharing between Tubulin Dimers Favours Microtubule Nucleation and Elongation via Facilitated Diffusion.
#@Alain Mechulam,Konstantin G. Chernov,Elodie Mucher,Loic Hamon,Patrick A. Curmi,David Pastré
#t2009
#cPLoS Computational Biology
#index3372285
#% 
#!
  
#*Correction: Structure Modeling of All Identified G Protein-Coupled Receptors in the Human Genome.
#@Yang Zhang,Mark E. DeVries,Jeffrey Skolnick
#t2006
#cPLoS Computational Biology
#index3372505
#% 
#!
  
#*What Can Causal Networks Tell Us about Metabolic Pathways?
#@Rachael Hageman Blair,Daniel J. Kliebenstein,Gary A. Churchill
#t2012
#cPLoS Computational Biology
#index3372458
#% 
#!
  
#*Structure-Based Predictive Models for Allosteric Hot Spots.
#@Omar N. A. Demerdash,Michael D. Daily,Julie C. Mitchell
#t2009
#cPLoS Computational Biology
#index3372392
#% 
#!
  
#*Blurring of High-Resolution Data Shows that the Effect of Intrinsic Nucleosome Occupancy on Transcription Factor Binding is Mostly Regional, Not Local.
#@Wee Siong Goh,Yuriy Orlov,Jingmei Li,Neil D. Clarke
#t2010
#cPLoS Computational Biology
#index3372372
#% 
#!
  
#*Ten Simple Rules for Choosing between Industry and Academia.
#@David B. Searls
#t2009
#cPLoS Computational Biology
#index3372660
#% 
#!
  
#*Construction and Modelling of an Inducible Positive Feedback Loop Stably Integrated in a Mammalian Cell-Line.
#@Velia Siciliano,Filippo Menolascina,Lucia Marucci,Chiara Fracassi,Immacolata Garzilli,Maria Nicoletta Moretti,Diego di Bernardo
#t2011
#cPLoS Computational Biology
#index3372791
#% 
#!
  
#*Correction: New Maximum Likelihood Estimators for Eukaryotic Intron Evolution.
#@Hung D. Nguyen,Maki Yoshihama,Naoya Kenmochi
#t2006
#cPLoS Computational Biology
#index3372703
#% 
#!
  
#*Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag.
#@Jonathan M. Carlson,Zabrina L. Brumme,Christine M. Rousseau,Chanson J. Brumme,Philippa Matthews,Carl Myers Kadie,James I. Mullins,Bruce D. Walker,P. Richard Harrigan,Philip J. R. Goulder,David Heckerman
#t2008
#cPLoS Computational Biology
#index3372534
#% 
#!
  
#*An Allosteric Mechanism for Switching between Parallel Tracks in Mammalian Sulfur Metabolism.
#@Tatyana K. Korendyaseva,Denis N. Kuvatov,Vladimir A. Volkov,Michael V. Martinov,Victor M. Vitvitsky,Ruma Banerjee,Fazoil I. Ataullakhanov
#t2008
#cPLoS Computational Biology
#index3372188
#% 
#!
  
#*Risk, Unexpected Uncertainty, and Estimation Uncertainty: Bayesian Learning in Unstable Settings.
#@Elise Payzan-LeNestour,Peter Bossaerts
#t2011
#cPLoS Computational Biology
#index3372590
#% 
#!
  
#*Falling towards Forgetfulness: Synaptic Decay Prevents Spontaneous Recovery of Memory.
#@James V. Stone,Peter E. Jupp
#t2008
#cPLoS Computational Biology
#index3372611
#% 
#!
  
#*Automatic Extraction of Protein Point Mutations Using a Graph Bigram Association.
#@Lawrence C. Lee,Florence Horn,Fred E. Cohen
#t2007
#cPLoS Computational Biology
#index3372464
#% 
#!
  
#*A Look Inside HIV Resistance through Retroviral Protease Interaction Maps.
#@Aleksejs Kontijevskis,Peteris Prusis,Ramona Petrovska,Sviatlana Yahorava,Felikss Mutulis,Ilze Mutule,Henryk Jan Komorowski,Jarl E. S. Wikberg
#t2007
#cPLoS Computational Biology
#index3372006
#% 
#!
  
#*Axonal Velocity Distributions in Neural Field Equations.
#@Ingo Bojak,David T. J. Liley
#t2010
#cPLoS Computational Biology
#index3372511
#% 
#!
  
#*Network-Free Inference of Knockout Effects in Yeast.
#@Tal Peleg,Nir Yosef,Eytan Ruppin,Roded Sharan
#t2010
#cPLoS Computational Biology
#index3371866
#% 
#!
  
#*The Effects of NMDA Subunit Composition on Calcium Influx and Spike Timing-Dependent Plasticity in Striatal Medium Spiny Neurons.
#@Rebekah C. Evans,Teresa Morera-Herreras,Yihui Cui,Kai Du,Tom Sheehan,Jeanette Hellgren Kotaleski,Laurent Venance,Kim T. Blackwell
#t2012
#cPLoS Computational Biology
#index3372252
#% 
#!
  
#*An Evolutionary Trade-Off between Protein Turnover Rate and Protein Aggregation Favors a Higher Aggregation Propensity in Fast Degrading Proteins.
#@Greet De Baets,Joke Reumers,Javier Delgado Blanco,Joaquín Dopazo,Joost Schymkowitz,Frederic Rousseau
#t2011
#cPLoS Computational Biology
#index3372737
#% 
#!
  
#*Molecular Predictors of 3D Morphogenesis by Breast Cancer Cell Lines in 3D Culture.
#@Ju Han,Hang Chang,Orsi Giricz,Genee Y. Lee,Frederick L. Baehner,Joe W. Gray,Mina J. Bissell,Paraic A. Kenny,Bahram Parvin
#t2010
#cPLoS Computational Biology
#index3372492
#% 
#!
  
#*Dynamic Energy Landscapes of Riboswitches Help Interpret Conformational Rearrangements and Function.
#@Giulio Quarta,Ken Sin,Tamar Schlick
#t2012
#cPLoS Computational Biology
#index3372461
#% 
#!
  
#*Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering.
#@Sebastian Will,Kristin Reiche,Ivo L. Hofacker,Peter F. Stadler,Rolf Backofen
#t2007
#cPLoS Computational Biology
#index3371838
#% 
#!
  
#*The Rates of Protein Synthesis and Degradation Account for the Differential Response of Neurons to Spaced and Massed Training Protocols.
#@Faisal Naqib,Carole A. Farah,Christopher C. Pack,Wayne S. Sossin
#t2011
#cPLoS Computational Biology
#index3372804
#% 
#!
  
#*Lobe Specific Ca-Calmodulin Nano-Domain in Neuronal Spines: A Single Molecule Level Analysis.
#@Yoshihisa Kubota,M. Neal Waxham
#t2010
#cPLoS Computational Biology
#index3372146
#% 
#!
  
#*Bonsai Trees in Your Head: How the Pavlovian System Sculpts Goal-Directed Choices by Pruning Decision Trees.
#@Quentin J. M. Huys,Neir Eshel,Elizabeth J. P. O'Nions,Luke Sheridan,Peter Dayan,Jonathan P. Roiser
#t2012
#cPLoS Computational Biology
#index3372301
#% 
#!
  
#*Protein-Protein Interactions More Conserved within Species than across Species.
#@Sven Mika,Burkhard Rost
#t2006
#cPLoS Computational Biology
#index3372181
#% 
#!
  
#*Probing the Flexibility of Large Conformational Changes in Protein Structures through Local Perturbations.
#@Bosco K. Ho,David A. Agard
#t2009
#cPLoS Computational Biology
#index3372633
#% 
#!
  
#*Hydrophobicity and Charge Shape Cellular Metabolite Concentrations.
#@Arren Bar-Even,Elad Noor,Avi I. Flamholz,Joerg M. Buescher,Ron Milo
#t2011
#cPLoS Computational Biology
#index3372274
#% 
#!
  
#*Optimal Compensation for Temporal Uncertainty in Movement Planning.
#@Todd E. Hudson,Laurence T. Maloney,Michael S. Landy
#t2008
#cPLoS Computational Biology
#index3372088
#% 
#!
  
#*Differences in Nutrient Requirements Imply a Non-Linear Emergence of Leaders in Animal Groups.
#@Cédric Sueur,Jean-Louis Deneubourg,Odile Petit,Iain D. Couzin
#t2010
#cPLoS Computational Biology
#index3372420
#% 
#!
  
#*The Role of the Frank-Starling Law in the Transduction of Cellular Work to Whole Organ Pump Function: A Computational Modeling Analysis.
#@Steven Niederer,Nicolas Smith
#t2009
#cPLoS Computational Biology
#index3372103
#% 
#!
  
#*The Signal in the Genomes.
#@David Sankoff
#t2006
#cPLoS Computational Biology
#index3371829
#% 
#!
  
#*Protein Interaction Networks - More Than Mere Modules.
#@Stefan Pinkert,Jörg Schultz,Jörg Reichardt
#t2010
#cPLoS Computational Biology
#index3372335
#% 
#!
  
#*Membrane Properties and the Balance between Excitation and Inhibition Control Gamma-Frequency Oscillations Arising from Feedback Inhibition.
#@Michael N. Economo,John A. White
#t2012
#cPLoS Computational Biology
#index3372120
#% 
#!
  
#*Intrinsically Disordered Regions May Lower the Hydration Free Energy in Proteins: A Case Study of Nudix Hydrolase in the Bacterium .
#@Omar Awile,Anita Krisko,Ivo F. Sbalzarini,Bojan Zagrovic
#t2010
#cPLoS Computational Biology
#index3371839
#% 
#!
  
#*Structural and Thermodynamic Approach to Peptide Immunogenicity.
#@Carlos J. Camacho,Yasuhiro Katsumata,Dana P. Ascherman
#t2008
#cPLoS Computational Biology
#index3372671
#% 
#!
  
#*Disentangling Direct from Indirect Co-Evolution of Residues in Protein Alignments.
#@Lukas Burger,Erik van Nimwegen
#t2010
#cPLoS Computational Biology
#index3372597
#% 
#!
  
#*Inferring Pathway Activity toward Precise Disease Classification.
#@Eunjung Lee,Han-Yu Chuang,Jong-Won Kim,Trey Ideker,Doheon Lee
#t2008
#cPLoS Computational Biology
#index3372330
#% 
#!
  
#*Organization of Cellular Receptors into a Nanoscale Junction during HIV-1 Adhesion.
#@Terrence M. Dobrowsky,Brian R. Daniels,Robert F. Siliciano,Sean X. Sun,Denis Wirtz
#t2010
#cPLoS Computational Biology
#index3372246
#% 
#!
  
#*The Role of Medical Structural Genomics in Discovering New Drugs for Infectious Diseases.
#@Wesley C. Van Voorhis,Wim G. J. Hol,Peter J. Myler,Lance J. Stewart
#t2009
#cPLoS Computational Biology
#index3372494
#% 
#!
  
#*Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology.
#@Karthik Devarajan
#t2008
#cPLoS Computational Biology
#index3372025
#% 
#!
  
#*Modelling the Effects of Population Structure on Childhood Disease: The Case of Varicella.
#@Romain Silhol,Pierre-Yves Boëlle
#t2011
#cPLoS Computational Biology
#index3372328
#% 
#!
  
#*CodonTest: Modeling Amino Acid Substitution Preferences in Coding Sequences.
#@Wayne Delport,Konrad Scheffler,Gordon Botha,Mike B. Gravenor,Spencer V. Muse,Sergei L. Kosakovsky Pond
#t2010
#cPLoS Computational Biology
#index3372310
#% 
#!
  
#*Moving Education Forward.
#@Fran Lewitter
#t2007
#cPLoS Computational Biology
#index3372272
#% 
#!
  
#*Symmetric Allosteric Mechanism of Hexameric Arginine Repressor Exploits Competition between L-Arginine Ligands and Resident Arginine Residues.
#@Rebecca Strawn,Milan Melichercik,Michael Green,Thomas Stockner,Jannette Carey,Rüdiger Ettrich
#t2010
#cPLoS Computational Biology
#index3372243
#% 
#!
  
#*Conserved Expression Patterns Predict microRNA Targets.
#@William Ritchie,Megha Rajasekhar,Stephane Flamant,John E. J. Rasko
#t2009
#cPLoS Computational Biology
#index3371867
#% 
#!
  
#*Deciphering Protein-Protein Interactions. Part I. Experimental Techniques and Databases.
#@Benjamin A. Shoemaker,Anna R. Panchenko
#t2007
#cPLoS Computational Biology
#index3372723
#% 
#!
  
#*A Continuum Model for Metabolic Gas Exchange in Pear Fruit.
#@Q. Tri Ho,Pieter Verboven,Bert E. Verlinden,Jeroen Lammertyn,Stefan Vandewalle,Bart M. Nicolaï
#t2008
#cPLoS Computational Biology
#index3372414
#% 
#!
  
#*Large-Scale Turnover of Functional Transcription Factor Binding Sites in .
#@Alan M. Moses,Daniel A. Pollard,David A. Nix,Venky N. Iyer,Xiao-Yong Li,Mark D. Biggin,Michael B. Eisen
#t2006
#cPLoS Computational Biology
#index3372165
#% 
#!
  
#*Erythrocyte Membrane Protein 1 Diversity in Seven Genomes - Divide and Conquer.
#@Thomas S. Rask,Daniel A. Hansen,Thor G. Theander,Anders Gorm Pedersen,Thomas Lavstsen
#t2010
#cPLoS Computational Biology
#index3372083
#% 
#!
  
#*HIV Promoter Integration Site Primarily Modulates Transcriptional Burst Size Rather Than Frequency.
#@Ron Skupsky,John C. Burnett,Jonathan E. Foley,David V. Schaffer,Adam P. Arkin
#t2010
#cPLoS Computational Biology
#index3372604
#% 
#!
  
#*Precise Regulation of Gene Expression Dynamics Favors Complex Promoter Architectures.
#@Dirk Müller,Jörg Stelling
#t2009
#cPLoS Computational Biology
#index3372093
#% 
#!
  
#*On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report.
#@Paul D. Thomas,Valerie Wood,Christopher J. Mungall,Suzanna E. Lewis,Judith A. Blake
#t2012
#cPLoS Computational Biology
#index3371921
#% 
#!
  
#*Implementing Arithmetic and Other Analytic Operations By Transcriptional Regulation.
#@Sean M. Cory,Theodore J. Perkins
#t2008
#cPLoS Computational Biology
#index3372139
#% 
#!
  
#*A Mathematical Model for Neutrophil Gradient Sensing and Polarization.
#@Matthew Onsum,Christopher V. Rao
#t2007
#cPLoS Computational Biology
#index3371941
#% 
#!
  
#*Nonlinearity of Mechanochemical Motions in Motor Proteins.
#@Yuichi Togashi,Toshio Yanagida,Alexander S. Mikhailov
#t2010
#cPLoS Computational Biology
#index3371848
#% 
#!
  
#*Correction: (A)Symmetric Stem Cell Replication and Cancer.
#@David Dingli,Arne Traulsen,Franziska Michor
#t2007
#cPLoS Computational Biology
#index3372241
#% 
#!
  
#*Ten Simple Rules for Providing a Scientific Web Resource.
#@Sebastian J. Schultheiß
#t2011
#cPLoS Computational Biology
#index3372044
#% 
#!
  
#*Evolution of Gene Regulatory Networks by Fluctuating Selection and Intrinsic Constraints.
#@Masaki E. Tsuda,Masakado Kawata
#t2010
#cPLoS Computational Biology
#index3371887
#% 
#!
  
#*Power-Law Inter-Spike Interval Distributions Infer a Conditional Maximization of Entropy in Cortical Neurons.
#@Yasuhiro Tsubo,Yoshikazu Isomura,Tomoki Fukai
#t2012
#cPLoS Computational Biology
#index3372216
#% 
#!
  
#*Trade-off between Responsiveness and Noise Suppression in Biomolecular System Responses to Environmental Cues.
#@Alexander V. Ratushny,Ilya Shmulevich,John D. Aitchison
#t2011
#cPLoS Computational Biology
#index3372619
#% 
#!
  
#*MORPH: Probabilistic Alignment Combined with Hidden Markov Models of -Regulatory Modules.
#@Saurabh Sinha,Xin He
#t2007
#cPLoS Computational Biology
#index3372271
#% 
#!
  
#*Synaptic Plasticity and Connectivity Requirements to Produce Stimulus-Pair Specific Responses in Recurrent Networks of Spiking Neurons.
#@Mark A. Bourjaily,Paul Miller
#t2011
#cPLoS Computational Biology
#index3372266
#% 
#!
  
#*Library of Disordered Patterns in 3D Protein Structures.
#@Michail Yu. Lobanov,Eugenia Furletova,Natalya S. Bogatyreva,Mikhail A. Roytberg,Oxana V. Galzitskaya
#t2010
#cPLoS Computational Biology
#index3372430
#% 
#!
  
#*Authors' Reply.
#@Eliot C. Bush,Bruce T. Lahn
#t2006
#cPLoS Computational Biology
#index3372640
#% 
#!
  
#*A Comprehensive Benchmark of Kernel Methods to Extract Protein-Protein Interactions from Literature.
#@Domonkos Tikk,Philippe Thomas,Peter Palaga,Jörg Hakenberg,Ulf Leser
#t2010
#cPLoS Computational Biology
#index3372307
#% 
#!
  
#*Effective Stimuli for Constructing Reliable Neuron Models.
#@Shaul Druckmann,Thomas K. Berger,Felix Schürmann,Sean Hill,Henry Markram,Idan Segev
#t2011
#cPLoS Computational Biology
#index3372237
#% 
#!
  
#*Warm Body Temperature Facilitates Energy Efficient Cortical Action Potentials.
#@Yuguo Yu,Adam P. Hill,David A. McCormick
#t2012
#cPLoS Computational Biology
#index3371905
#% 
#!
  
#*Predicted Auxiliary Navigation Mechanism of Peritrichously Flagellated Chemotactic Bacteria.
#@Nikita Vladimirov,Dirk Lebiedz,Victor Sourjik
#t2010
#cPLoS Computational Biology
#index3372807
#% 
#!
  
#*The (In)dependence of Alternative Splicing and Gene Duplication.
#@David Talavera,Christine Vogel,Modesto Orozco,Sarah A. Teichmann,Xavier de la Cruz
#t2007
#cPLoS Computational Biology
#index3372682
#% 
#!
  
#*Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments.
#@Lies Baeten,Joke Reumers,Vicente Tur,François Stricher,Tom Lenaerts,Luis Serrano,Frederic Rousseau,Joost Schymkowitz
#t2008
#cPLoS Computational Biology
#index3371831
#% 
#!
  
#*Flow-Based Cytometric Analysis of Cell Cycle via Simulated Cell Populations.
#@M. Rowan Brown,Huw D. Summers,Paul Rees,Paul J. Smith,Sally C. Chappell,Rachel J. Errington
#t2010
#cPLoS Computational Biology
#index3372405
#% 
#!
  
#*Live Coverage of Scientific Conferences Using Web Technologies.
#@Allyson L. Lister,Ruchira S. Datta,Oliver Hofmann,Roland Krause,Michael Kuhn,Bettina Roth,Reinhard Schneider
#t2010
#cPLoS Computational Biology
#index3372716
#% 
#!
  
#*The Peri-Saccadic Perception of Objects and Space.
#@Fred Henrik Hamker,Marc Zirnsak,Dirk Calow,Markus Lappe
#t2008
#cPLoS Computational Biology
#index3372110
#% 
#!
  
#*Unfolding Simulations Reveal the Mechanism of Extreme Unfolding Cooperativity in the Kinetically Stable α-Lytic Protease.
#@Neema L. Salimi,Bosco K. Ho,David A. Agard
#t2010
#cPLoS Computational Biology
#index3372137
#% 
#!
  
#*Pushing Structural Information into the Yeast Interactome by High-Throughput Protein Docking Experiments.
#@Roberto Mosca,Carles Pons,Juan Fernández-Recio,Patrick Aloy
#t2009
#cPLoS Computational Biology
#index3372008
#% 
#!
  
#*Can Monkeys Choose Optimally When Faced with Noisy Stimuli and Unequal Rewards?
#@Samuel Feng,Philip Holmes,Alan Rorie,William T. Newsome
#t2009
#cPLoS Computational Biology
#index3372244
#% 
#!
  
#*The Signaling Petri Net-Based Simulator: A Non-Parametric Strategy for Characterizing the Dynamics of Cell-Specific Signaling Networks.
#@Derek A. Ruths,Melissa Muller,Jen-Te Tseng,Luay Nakhleh,Prahlad T. Ram
#t2008
#cPLoS Computational Biology
#index3372229
#% 
#!
  
#*Prediction of Transcriptional Terminators in and Related Species.
#@Michiel J. L. de Hoon,Yuko Makita,Kenta Nakai,Satoru Miyano
#t2005
#cPLoS Computational Biology
#index3372469
#% 
#!
  
#*Quantitative Modeling of GRK-Mediated β2AR Regulation.
#@Sharat J. Vayttaden,Jacqueline Friedman,Tuan M. Tran,Thomas C. Rich,Carmen W. Dessauer,Richard B. Clark
#t2010
#cPLoS Computational Biology
#index3372835
#% 
#!
  
#*Theoretical Analysis of Pre-Receptor Image Conditioning in Weakly Electric Fish.
#@Adriana Migliaro,Angel A. Caputi,Ruben Budelli
#t2005
#cPLoS Computational Biology
#index3372782
#% 
#!
  
#*A Differentiation-Based Phylogeny of Cancer Subtypes.
#@Markus Riester,Camille Stephan-Otto Attolini,Robert J. Downey,Samuel Singer,Franziska Michor
#t2010
#cPLoS Computational Biology
#index3372111
#% 
#!
  
#*Integration of Evolutionary Features for the Identification of Functionally Important Residues in Major Facilitator Superfamily Transporters.
#@Jouhyun Jeon,Jae-Seong Yang,Sanguk Kim
#t2009
#cPLoS Computational Biology
#index3372851
#% 
#!
  
#*Noise Management by Molecular Networks.
#@Frank J. Bruggeman,Nils Blüthgen,Hans V. Westerhoff
#t2009
#cPLoS Computational Biology
#index3372074
#% 
#!
  
#*Quasispecies Made Simple.
#@J. J. Bull,Lauren Ancel Meyers,Michael Lachmann
#t2005
#cPLoS Computational Biology
#index3372829
#% 
#!
  
#*Molecular Structures of Quiescently Grown and Brain-Derived Polymorphic Fibrils of the Alzheimer Amyloid Aβ Peptide: A Comparison to Agitated Fibrils.
#@Chun Wu,Michael T. Bowers,Joan-Emma Shea
#t2010
#cPLoS Computational Biology
#index3372082
#% 
#!
  
#*The Ion Channel Inverse Problem: Neuroinformatics Meets Biophysics.
#@Robert C. Cannon,Giampaolo D'Alessandro
#t2006
#cPLoS Computational Biology
#index3372366
#% 
#!
  
#*Change in Allosteric Network Affects Binding Affinities of PDZ Domains: Analysis through Perturbation Response Scanning.
#@Z. Nevin Gerek,S. Banu Ozkan
#t2011
#cPLoS Computational Biology
#index3372478
#% 
#!
  
#*A Multi-Component Model of the Developing Retinocollicular Pathway Incorporating Axonal and Synaptic Growth.
#@Keith B. Godfrey,Stephen J. Eglen,Nicholas V. Swindale
#t2009
#cPLoS Computational Biology
#index3372053
#% 
#!
  
#*Categorial Compositionality: A Category Theory Explanation for the Systematicity of Human Cognition.
#@Steven Phillips,William H. Wilson
#t2010
#cPLoS Computational Biology
#index3372745
#% 
#!
  
#*Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes.
#@Juan A. G. Ranea,Corin Yeats,Alastair Grant,Christine A. Orengo
#t2007
#cPLoS Computational Biology
#index3372710
#% 
#!
  
#*Associating Genes and Protein Complexes with Disease via Network Propagation.
#@Oron Vanunu,Oded Magger,Eytan Ruppin,Tomer Shlomi,Roded Sharan
#t2010
#cPLoS Computational Biology
#index3372157
#% 
#!
  
#*A Peptide Filtering Relation Quantifies MHC Class I Peptide Optimization.
#@Neil Dalchau,James Andrew Phillips,Leonard D. Goldstein,Mark Howarth,Luca Cardelli,Stephen Emmott,Tim Elliott,Joern M. Werner
#t2011
#cPLoS Computational Biology
#index3372578
#% 
#!
  
#*Chromosome Driven Spatial Patterning of Proteins in Bacteria.
#@Saeed Saberi,Eldon Emberly
#t2010
#cPLoS Computational Biology
#index3372689
#% 
#!
  
#*Sarcomere Lattice Geometry Influences Cooperative Myosin Binding in Muscle.
#@Bertrand C. W. Tanner,Thomas L. Daniel,Michael Regnier
#t2007
#cPLoS Computational Biology
#index3371896
#% 
#!
  
#*Replication Timing: A Fingerprint for Cell Identity and Pluripotency.
#@Tyrone Ryba,Ichiro Hiratani,Takayo Sasaki,Dana Battaglia,Michael Kulik,Jinfeng Zhang,Stephen Dalton,David M. Gilbert
#t2011
#cPLoS Computational Biology
#index3372075
#% 
#!
  
#*Simulating Properties of In Vitro Epithelial Cell Morphogenesis.
#@Mark R. Grant,Keith E. Mostov,Thea D. Tlsty,C. Anthony Hunt
#t2006
#cPLoS Computational Biology
#index3372653
#% 
#!
  
#*Unsupervised Learning of Visual Features through Spike Timing Dependent Plasticity.
#@Timothée Masquelier,Simon J. Thorpe
#t2007
#cPLoS Computational Biology
#index3372358
#% 
#!
  
#*Cooperativity Dominates the Genomic Organization of p53-Response Elements: A Mechanistic View.
#@Yongping Pan,Ruth Nussinov
#t2009
#cPLoS Computational Biology
#index3372626
#% 
#!
  
#*Enzyme Kinetics of the Mitochondrial Deoxyribonucleoside Salvage Pathway Are Not Sufficient to Support Rapid mtDNA Replication.
#@Vishal V. Gandhi,David C. Samuels
#t2011
#cPLoS Computational Biology
#index3372704
#% 
#!
  
#*CATHEDRAL: A Fast and Effective Algorithm to Predict Folds and Domain Boundaries from Multidomain Protein Structures.
#@Oliver Redfern,Andrew P. Harrison,Timothy Dallman,Frances M. G. Pearl,Christine A. Orengo
#t2007
#cPLoS Computational Biology
#index3372294
#% 
#!
  
#*Pharmacodynamic Modeling of Anti-Cancer Activity of Tetraiodothyroacetic Acid in a Perfused Cell Culture System.
#@Hung-Yun Lin,Cornelia B. Landersdorfer,David London,Ran Meng,Chang-Uk Lim,Cassie Lin,Sharon Lin,Heng-Yuan Tang,David Brown,Brian Van Scoy,Robert Kulawy,Lurdes Queimado,George L. Drusano,Arnold Louie,Faith B. Davis,Shaker A. Mousa,Paul J. Davis
#t2011
#cPLoS Computational Biology
#index3371886
#% 
#!
  
#*Systems Biology of Coagulation Initiation: Kinetics of Thrombin Generation in Resting and Activated Human Blood.
#@Manash S. Chatterjee,William S. Denney,Huiyan Jing,Scott L. Diamond
#t2010
#cPLoS Computational Biology
#index3372583
#% 
#!
  
#*Temporal Encoding in a Nervous System.
#@Zane N. Aldworth,Alexander G. Dimitrov,Graham I. Cummins,Tomás Gedeon,John P. Miller
#t2011
#cPLoS Computational Biology
#index3372150
#% 
#!
  
#*Recurrent Network Models for Perfect Temporal Integration of Fluctuating Correlated Inputs.
#@Hiroshi Okamoto,Tomoki Fukai
#t2009
#cPLoS Computational Biology
#index3372102
#% 
#!
  
#*A Whole-Body Model for Glycogen Regulation Reveals a Critical Role for Substrate Cycling in Maintaining Blood Glucose Homeostasis.
#@Ke Xu,Kevin T. Morgan,Abby Todd Gehris,Timothy C. Elston,Shawn M. Gomez
#t2011
#cPLoS Computational Biology
#index3372519
#% 
#!
  
#*Natural Biocombinatorics in the Polyketide Synthase Genes of the Actinobacterium .
#@Holger Jenke-Kodama,Thomas Börner,Elke Dittmann
#t2006
#cPLoS Computational Biology
#index3372449
#% 
#!
  
#*Collective Dynamics Differentiates Functional Divergence in Protein Evolution.
#@Tyler J. Glembo,Daniel W. Farrell,Z. Nevin Gerek,M. F. Thorpe,S. Banu Ozkan
#t2012
#cPLoS Computational Biology
#index3372017
#% 
#!
  
#*On State-Space Reduction in Multi-Strain Pathogen Models, with an Application to Antigenic Drift in Influenza A.
#@Sergey Kryazhimskiy,Ulf Dieckmann,Simon A. Levin,Jonathan Dushoff
#t2007
#cPLoS Computational Biology
#index3372160
#% 
#!
  
#*Wide-Field Motion Integration in Fly VS Cells: Insights from an Inverse Approach.
#@Benjamin Torben-Nielsen,Klaus M. Stiefel
#t2010
#cPLoS Computational Biology
#index3372799
#% 
#!
  
#*Why Genes Evolve Faster on Secondary Chromosomes in Bacteria.
#@Vaughn S. Cooper,Samuel H. Vohr,Sarah C. Wrocklage,Philip J. Hatcher
#t2010
#cPLoS Computational Biology
#index3372589
#% 
#!
  
#*Practical Measures of Integrated Information for Time-Series Data.
#@Adam B. Barrett,Anil K. Seth
#t2011
#cPLoS Computational Biology
#index3372349
#% 
#!
  
#*The Inactivation Principle: Mathematical Solutions Minimizing the Absolute Work and Biological Implications for the Planning of Arm Movements.
#@Bastien Berret,Christian Darlot,Frédéric Jean,Thierry Pozzo,Charalambos Papaxanthis,Jean-Paul Gauthier
#t2008
#cPLoS Computational Biology
#index3372818
#% 
#!
  
#*PoreWalker: A Novel Tool for the Identification and Characterization of Channels in Transmembrane Proteins from Their Three-Dimensional Structure.
#@Marialuisa Pellegrini-Calace,Tim Maiwald,Janet M. Thornton
#t2009
#cPLoS Computational Biology
#index3372548
#% 
#!
  
#*Do Humans Optimally Exploit Redundancy to Control Step Variability in Walking?
#@Jonathan B. Dingwell,Joby John,Joseph P. Cusumano
#t2010
#cPLoS Computational Biology
#index3371999
#% 
#!
  
#*Robustness of Learning That Is Based on Covariance-Driven Synaptic Plasticity.
#@Yonatan Loewenstein
#t2008
#cPLoS Computational Biology
#index3372483
#% 
#!
  
#*Degenerate T-cell Recognition of Peptides on MHC Molecules Creates Large Holes in the T-cell Repertoire.
#@Jorg J. A. Calis,Rob J. De Boer,Can Kesmir
#t2012
#cPLoS Computational Biology
#index3372555
#% 
#!
  
#*Molecular Origin of Polyglutamine Aggregation in Neurodegenerative Diseases.
#@Sagar D. Khare,Feng Ding,Kenneth N. Gwanmesia,Nikolay V. Dokholyan
#t2005
#cPLoS Computational Biology
#index3372533
#% 
#!
  
#*Mutations of Different Molecular Origins Exhibit Contrasting Patterns of Regional Substitution Rate Variation.
#@Navin Elango,Seong-Ho Kim,Eric Vigoda,Soojin V. Yi
#t2008
#cPLoS Computational Biology
#index3372759
#% 
#!
  
#*Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data.
#@Chao Cheng,Koon-Kiu Yan,Woochang Hwang,Jiang Qian,Nitin Bhardwaj,Joel S. Rozowsky,Zhi John Lu,Wei Niu,Pedro Alves,Masaomi Kato,Michael Snyder,Mark Gerstein
#t2011
#cPLoS Computational Biology
#index3372612
#% 
#!
  
#*Multi-Scale Modeling of HIV Infection and APOBEC3G-Based Anti-Retroviral Therapy.
#@Iraj Hosseini,Feilim Mac Gabhann
#t2012
#cPLoS Computational Biology
#index3372674
#% 
#!
  
#*Efficient Physical Embedding of Topologically Complex Information Processing Networks in Brains and Computer Circuits.
#@Danielle S. Bassett,Daniel Greenfield,Andreas Meyer-Lindenberg,Daniel R. Weinberger,Simon W. Moore,Edward T. Bullmore
#t2010
#cPLoS Computational Biology
#index3371969
#% 
#!
  
#*Spatial Pattern Switching Enables Cyclic Evolution in Spatial Epidemics.
#@Maarten Chris Boerlijst,Willem Marijn van Ballegooijen
#t2010
#cPLoS Computational Biology
#index3372384
#% 
#!
  
#*Ensemble Models of Neutrophil Trafficking in Severe Sepsis.
#@Sang O. K. Song,Justin Hogg,Zhi-Yong Peng,Robert Parker,John A. Kellum,Gilles Clermont
#t2012
#cPLoS Computational Biology
#index3371846
#% 
#!
  
#*Informing Optimal Environmental Influenza Interventions: How the Host, Agent, and Environment Alter Dominant Routes of Transmission.
#@Ian H. Spicknall,James S. Koopman,Mark Nicas,Josep M. Pujol,Sheng Li,Joseph N. S. Eisenberg
#t2010
#cPLoS Computational Biology
#index3371963
#% 
#!
  
#*Identifying Single Copy Orthologs in Metazoa.
#@Christopher J. Creevey,Jean Muller,Tobias Doerks,Julie D. Thompson,Detlev Arendt,Peer Bork
#t2011
#cPLoS Computational Biology
#index3372752
#% 
#!
  
#*Deciphering the Code for Retroviral Integration Target Site Selection.
#@Federico Andrea Santoni,Oliver Hartley,Jeremy Luban
#t2010
#cPLoS Computational Biology
#index3372625
#% 
#!
  
#*Protein Complex Evolution Does Not Involve Extensive Network Rewiring.
#@Teunis J. P. van Dam,Berend Snel
#t2008
#cPLoS Computational Biology
#index3372419
#% 
#!
  
#*Nitric Oxide Regulates Input Specificity of Long-Term Depression and Context Dependence of Cerebellar Learning.
#@Hideaki Ogasawara,Tomokazu Doi,Kenji Doya,Mitsuo Kawato
#t2007
#cPLoS Computational Biology
#index3372234
#% 
#!
  
#*Control of Membrane Fusion Mechanism by Lipid Composition: Predictions from Ensemble Molecular Dynamics.
#@Peter M. Kasson,Vijay S. Pande
#t2007
#cPLoS Computational Biology
#index3372036
#% 
#!
  
#*A Multiscale Model to Investigate Circadian Rhythmicity of Pacemaker Neurons in the Suprachiasmatic Nucleus.
#@Christina Vasalou,Michael A. Henson
#t2010
#cPLoS Computational Biology
#index3372327
#% 
#!
  
#*Patterns of HIV-1 Protein Interaction Identify Perturbed Host-Cellular Subsystems.
#@Jamie I. MacPherson,Jonathan E. Dickerson,John W. Pinney,David L. Robertson
#t2010
#cPLoS Computational Biology
#index3372026
#% 
#!
  
#*Microblogging the ISMB: A New Approach to Conference Reporting.
#@Neil F. W. Saunders,Pedro Beltrão,Lars Juhl Jensen,Daniel Jurczak,Roland Krause,Michael Kuhn,Shirley Wu
#t2009
#cPLoS Computational Biology
#index3372556
#% 
#!
  
#*Cortical Factor Feedback Model for Cellular Locomotion and Cytofission.
#@Shin I. Nishimura,Masahiro Ueda,Masaki Sasai
#t2009
#cPLoS Computational Biology
#index3372569
#% 
#!
  
#*Specific Entrainment of Mitral Cells during Gamma Oscillation in the Rat Olfactory Bulb.
#@François O. David,Etienne Hugues,Tristan Cenier,Nicolas Fourcaud-Trocmé,Nathalie Buonviso
#t2009
#cPLoS Computational Biology
#index3372205
#% 
#!
  
#*A Condensation-Ordering Mechanism in Nanoparticle-Catalyzed Peptide Aggregation.
#@Stefan Auer,Antonio Trovato,Michele Vendruscolo
#t2009
#cPLoS Computational Biology
#index3372062
#% 
#!
  
#*Patterns of Subnet Usage Reveal Distinct Scales of Regulation in the Transcriptional Regulatory Network of .
#@Carsten Marr,Fabian J. Theis,Larry S. Liebovitch,Marc-Thorsten Hütt
#t2010
#cPLoS Computational Biology
#index3372045
#% 
#!
  
#*Gamma Oscillations of Spiking Neural Populations Enhance Signal Discrimination.
#@Naoki Masuda,Brent Doiron
#t2007
#cPLoS Computational Biology
#index3372824
#% 
#!
  
#*SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models.
#@Aroop Sircar,Jeffrey J. Gray
#t2010
#cPLoS Computational Biology
#index3372491
#% 
#!
  
#*Models of Neocortical Layer 5b Pyramidal Cells Capturing a Wide Range of Dendritic and Perisomatic Active Properties.
#@Etay Hay,Sean Hill,Felix Schürmann,Henry Markram,Idan Segev
#t2011
#cPLoS Computational Biology
#index3371914
#% 
#!
  
#*A Cell-Based Model for Quorum Sensing in Heterogeneous Bacterial Colonies.
#@Pontus Melke,Patrik Sahlin,Andre Levchenko,Henrik Jönsson
#t2010
#cPLoS Computational Biology
#index3372436
#% 
#!
  
#*Partially Glycosylated Dendrimers Block MD-2 and Prevent TLR4-MD-2-LPS Complex Mediated Cytokine Responses.
#@Teresa S. Barata,Ian Teo,Steve Brocchini,Mire Zloh,Sunil Shaunak
#t2011
#cPLoS Computational Biology
#index3371951
#% 
#!
  
#*Aggregation Propensity of the Human Proteome.
#@Elodie Monsellier,Matteo Ramazzotti,Niccolò Taddei,Fabrizio Chiti
#t2008
#cPLoS Computational Biology
#index3372381
#% 
#!
  
#*Coordinate Dependence of Variability Analysis.
#@Dagmar Sternad,Se-Woong Park,Hermann Müller,Neville Hogan
#t2010
#cPLoS Computational Biology
#index3372196
#% 
#!
  
#*A Model of Stimulus-Specific Neural Assemblies in the Insect Antennal Lobe.
#@Dominique Martinez,Noelia Montejo
#t2008
#cPLoS Computational Biology
#index3372456
#% 
#!
  
#*The Effect of a ΔK280 Mutation on the Unfolded State of a Microtubule-Binding Repeat in Tau.
#@Austin Huang,Collin M. Stultz
#t2008
#cPLoS Computational Biology
#index3371931
#% 
#!
  
#*Kinetic Modeling of the Assembly, Dynamic Steady State, and Contraction of the FtsZ Ring in Prokaryotic Cytokinesis.
#@Ivan V. Surovtsev,Jeffrey J. Morgan,Paul A. Lindahl
#t2008
#cPLoS Computational Biology
#index3372796
#% 
#!
  
#*Live Coverage of Scientific Conferences Using Web Technologies.
#@Allyson L. Lister,Ruchira S. Datta,Oliver Hofmann,Roland Krause,Michael Kuhn,Bettina Roth,Reinhard Schneider
#t2009
#cPLoS Computational Biology
#index3372455
#% 
#!
  
#*The Modular Organization of Protein Interactions in .
#@José M. Peregrin-Alvarez,Xuejian Xiong,Chong Su,John Parkinson
#t2009
#cPLoS Computational Biology
#index3372793
#% 
#!
  
#*The Impact of Imitation on Vaccination Behavior in Social Contact Networks.
#@Martial L. Ndeffo Mbah,Jingzhou Liu,Chris T. Bauch,Yonas I. Tekel,Jan Medlock,Lauren Ancel Meyers,Alison P. Galvani
#t2012
#cPLoS Computational Biology
#index3372063
#% 
#!
  
#*Phenotypic Mutation Rates and the Abundance of Abnormal Proteins in Yeast.
#@Martin Willensdorfer,Reinhard Bürger,Martin A. Nowak
#t2007
#cPLoS Computational Biology
#index3372193
#% 
#!
  
#*From Structure Prediction to Genomic Screens for Novel Non-Coding RNAs.
#@Jan Gorodkin,Ivo L. Hofacker
#t2011
#cPLoS Computational Biology
#index3372598
#% 
#!
  
#*Prediction of Amyloidogenic and Disordered Regions in Protein Chains.
#@Oxana V. Galzitskaya,Sergiy O. Garbuzynskiy,Michail Yu. Lobanov
#t2006
#cPLoS Computational Biology
#index3372695
#% 
#!
  
#*Mathematical Modeling Identifies Inhibitors of Apoptosis as Mediators of Positive Feedback and Bistability.
#@Stefan Legewie,Nils Blüthgen,Hanspeter Herzel
#t2006
#cPLoS Computational Biology
#index3372429
#% 
#!
  
#*Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors.
#@Zhihua Zhang,Changning Liu,Geir Skogerbø,Xiaopeng Zhu,Hongchao Lu,Lan Chen,Baochen Shi,Yong Zhang,Jie Wang,Tao Wu,Runsheng Chen
#t2006
#cPLoS Computational Biology
#index3372391
#% 
#!
  
#*Functional Classification Using Phylogenomic Inference.
#@Duncan P. Brown,Kimmen Sjölander
#t2006
#cPLoS Computational Biology
#index3372774
#% 
#!
  
#*Robust Models for Optic Flow Coding in Natural Scenes Inspired by Insect Biology.
#@Russell S. A. Brinkworth,David C. O'Carroll
#t2009
#cPLoS Computational Biology
#index3372262
#% 
#!
  
#*Correction: Time to Organize the Bioinformatics Resourceome.
#@Nicola Cannata,Emanuela Merelli,Russ B. Altman
#t2006
#cPLoS Computational Biology
#index3371989
#% 
#!
  
#*A Toolbox Model of Evolution of Metabolic Pathways on Networks of Arbitrary Topology.
#@Tin Yau Pang,Sergei Maslov
#t2011
#cPLoS Computational Biology
#index3372668
#% 
#!
  
#*Intramolecular Cohesion of Coils Mediated by Phenylalanine-Glycine Motifs in the Natively Unfolded Domain of a Nucleoporin.
#@V. V. Krishnan,Edmond Y. Lau,Justin Yamada,Daniel P. Denning,Samir S. Patel,Michael E. Colvin,Michael F. Rexach
#t2008
#cPLoS Computational Biology
#index3372264
#% 
#!
  
#*A Bayesian Approach to the Evolution of Metabolic Networks on a Phylogeny.
#@Aziz Mithani,Gail M. Preston,Jotun Hein
#t2010
#cPLoS Computational Biology
#index3372400
#% 
#!
  
#*The Organization of Local and Distant Functional Connectivity in the Human Brain.
#@Jorge Sepulcre,Hesheng Liu,Tanveer Talukdar,Iñigo Martincorena,B. T. Thomas Yeo,Randy L. Buckner
#t2010
#cPLoS Computational Biology
#index3372186
#% 
#!
  
#*The Activity Reaction Core and Plasticity of Metabolic Networks.
#@Eivind Almaas,Zoltán N. Oltvai,Albert-László Barabási
#t2005
#cPLoS Computational Biology
#index3371924
#% 
#!
  
#*Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies.
#@Alexandra M. Schnoes,Shoshana D. Brown,Igor Dodevski,Patricia C. Babbitt
#t2009
#cPLoS Computational Biology
#index3372732
#% 
#!
  
#*The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures.
#@Diego U. Ferreiro,Aleksandra M. Walczak,Elizabeth A. Komives,Peter G. Wolynes
#t2008
#cPLoS Computational Biology
#index3372027
#% 
#!
  
#*Combined Evidence Annotation of Transposable Elements in Genome Sequences.
#@Hadi Quesneville,Casey M. Bergman,Olivier Andrieu,Delphine Autard,Danielle Nouaud,Michael Ashburner,Dominique Anxolabéhère
#t2005
#cPLoS Computational Biology
#index3372168
#% 
#!
  
#*Quantitative Analysis of Genetic and Neuronal Multi-Perturbation Experiments.
#@Alon Kaufman,Alon Keinan,Isaac Meilijson,Martin Kupiec,Eytan Ruppin
#t2005
#cPLoS Computational Biology
#index3372837
#% 
#!
  
#*Parameters in Dynamic Models of Complex Traits are Containers of Missing Heritability.
#@Yunpeng Wang,Arne B. Gjuvsland,Jon Olav Vik,Nicolas Smith,Peter J. Hunter,Stig W. Omholt
#t2012
#cPLoS Computational Biology
#index3372208
#% 
#!
  
#*A Dynamic Network Approach for the Study of Human Phenotypes.
#@Cesar A. Hidalgo R.,Nicholas Blumm,Albert-László Barabási,Nicholas A. Christakis
#t2009
#cPLoS Computational Biology
#index3372318
#% 
#!
  
#*What Do Transitive Inference and Class Inclusion Have in Common? Categorical (Co)Products and Cognitive Development.
#@Steven Phillips,William H. Wilson,Graeme S. Halford
#t2009
#cPLoS Computational Biology
#index3372251
#% 
#!
  
#*A Bayesian Approach to Quantifying the Effects of Mass Poultry Vaccination upon the Spatial and Temporal Dynamics of H5N1 in Northern Vietnam.
#@Patrick G. T. Walker,Simon Cauchemez,Raphaëlle Métras,Do Huu Dung,Dirk Pfeiffer,Azra C. Ghani
#t2010
#cPLoS Computational Biology
#index3372336
#% 
#!
  
#*Evidence for Composite Cost Functions in Arm Movement Planning: An Inverse Optimal Control Approach.
#@Bastien Berret,Enrico Chiovetto,Francesco Nori,Thierry Pozzo
#t2011
#cPLoS Computational Biology
#index3371875
#% 
#!
  
#*Reliability of Transcriptional Cycles and the Yeast Cell-Cycle Oscillator.
#@Volkan Sevim,Xinwei Gong,Joshua E. S. Socolar
#t2010
#cPLoS Computational Biology
#index3371847
#% 
#!
  
#*A General Definition and Nomenclature for Alternative Splicing Events.
#@Michael Sammeth,Sylvain Foissac,Roderic Guigó
#t2008
#cPLoS Computational Biology
#index3371828
#% 
#!
  
#*Linking Microscopic Spatial Patterns of Tissue Destruction in Emphysema to Macroscopic Decline in Stiffness Using a 3D Computational Model.
#@Harikrishnan Parameswaran,Arnab Majumdar,Béla Suki
#t2011
#cPLoS Computational Biology
#index3372175
#% 
#!
  
#*Genetic Signatures in the Envelope Glycoproteins of HIV-1 that Associate with Broadly Neutralizing Antibodies.
#@S. Gnanakaran,Marcus G. Daniels,Tanmoy Bhattacharya,Alan S. Lapedes,Anurag Sethi,Ming Li,Haili Tang,Kelli Greene,Hongmei Gao,Barton F. Haynes,Myron S. Cohen,George M. Shaw,Michael S. Seaman,Amit Kumar,Feng Gao,David C. Montefiori,Bette T. Korber
#t2010
#cPLoS Computational Biology
#index3371854
#% 
#!
  
#*Solving Navigational Uncertainty Using Grid Cells on Robots.
#@Michael Milford,Janet Wiles,Gordon Fraser Wyeth
#t2010
#cPLoS Computational Biology
#index3372348
#% 
#!
  
#*A Mathematical Model for the Reciprocal Differentiation of T Helper 17 Cells and Induced Regulatory T Cells.
#@Tian Hong,Jianhua Xing,Liwu Li,John J. Tyson
#t2011
#cPLoS Computational Biology
#index3372715
#% 
#!
  
#*Ten Simple Rules for Starting a Company.
#@Anthony C. Fletcher,Philip E. Bourne
#t2012
#cPLoS Computational Biology
#index3372520
#% 
#!
  
#*What Do I Want from the Publisher of the Future?
#@Philip E. Bourne
#t2010
#cPLoS Computational Biology
#index3371895
#% 
#!
  
#*A Systems Model for Immune Cell Interactions Unravels the Mechanism of Inflammation in Human Skin.
#@Najl V. Valeyev,Christian Hundhausen,Yoshinori Umezawa,Nikolai V. Kotov,Gareth Williams,Alex Clop,Crysanthi Ainali,Christos A. Ouzounis,Sophia Tsoka,Frank O. Nestle
#t2010
#cPLoS Computational Biology
#index3372073
#% 
#!
  
#*Live Coverage of Intelligent Systems for Molecular Biology/European Conference on Computational Biology (ISMB/ECCB) 2009.
#@Allyson L. Lister,Ruchira S. Datta,Oliver Hofmann,Roland Krause,Michael Kuhn,Bettina Roth,Reinhard Schneider
#t2010
#cPLoS Computational Biology
#index3372543
#% 
#!
  
#*Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction.
#@Axel Bernal,Koby Crammer,Artemis G. Hatzigeorgiou,Fernando Pereira
#t2007
#cPLoS Computational Biology
#index3372470
#% 
#!
  
#*A Sparse Coding Model with Synaptically Local Plasticity and Spiking Neurons Can Account for the Diverse Shapes of V1 Simple Cell Receptive Fields.
#@Joel Zylberberg,Jason Timothy Murphy,Michael Robert DeWeese
#t2011
#cPLoS Computational Biology
#index3372404
#% 
#!
  
#*Using Phylogeny to Improve Genome-Wide Distant Homology Recognition.
#@Sanne Abeln,Carlo Teubner,Charlotte M. Deane
#t2007
#cPLoS Computational Biology
#index3372603
#% 
#!
  
#*The Evolution of Word Composition in Metazoan Promoter Sequence.
#@Eliot C. Bush,Bruce T. Lahn
#t2006
#cPLoS Computational Biology
#index3372355
#% 
#!
  
#*Quantifying Intramolecular Binding in Multivalent Interactions: A Structure-Based Synergistic Study on Grb2-Sos1 Complex.
#@Anurag Sethi,Byron Goldstein,S. Gnanakaran
#t2011
#cPLoS Computational Biology
#index3372751
#% 
#!
  
#*Little Italy: An Agent-Based Approach to the Estimation of Contact Patterns- Fitting Predicted Matrices to Serological Data.
#@Fabrizio Iozzi,Francesco Trusiano,Matteo Chinazzi,Francesco C. Billari,Emilio Zagheni,Stefano Merler,Marco Ajelli,Emanuele Del Fava,Piero Manfredi
#t2010
#cPLoS Computational Biology
#index3372016
#% 
#!
  
#*Transition to Quorum Sensing in an Population: A Stochastic Model.
#@Andrew B. Goryachev,Da-Jun Toh,Keng Boon Wee,Travis Lee,Hai-Bao Zhang,Lian-Hui Zhang
#t2005
#cPLoS Computational Biology
#index3372439
#% 
#!
  
#*FluTE, a Publicly Available Stochastic Influenza Epidemic Simulation Model.
#@Dennis L. Chao,M. Elizabeth Halloran,Valerie J. Obenchain,Ira M. Longini Jr.
#t2010
#cPLoS Computational Biology
#index3372345
#% 
#!
  
#*Establishing a Successful Bioinformatics Core Facility Team.
#@Fran Lewitter,Michael Rebhan
#t2009
#cPLoS Computational Biology
#index3372432
#% 
#!
  
#*Self Containment, a Property of Modular RNA Structures, Distinguishes microRNAs.
#@Miler T. Lee,Junhyong Kim
#t2008
#cPLoS Computational Biology
#index3372094
#% 
#!
  
#*Hierarchical Models in the Brain.
#@Karl J. Friston
#t2008
#cPLoS Computational Biology
#index3372536
#% 
#!
  
#*Coping with Viral Diversity in HIV Vaccine Design: A Response to Nickle et al.
#@Will Fischer,H. X. Liao,Barton F. Haynes,Norman L. Letvin,Bette T. Korber
#t2008
#cPLoS Computational Biology
#index3372617
#% 
#!
  
#*The Statistical Neuroanatomy of Frontal Networks in the Macaque.
#@Bruno B. Averbeck,Moonsang Seo
#t2008
#cPLoS Computational Biology
#index3372178
#% 
#!
  
#*Molecular Mechanics of the α-Actinin Rod Domain: Bending, Torsional, and Extensional Behavior.
#@Javad Golji,Robert Collins,Mohammad R. K. Mofrad
#t2009
#cPLoS Computational Biology
#index3372495
#% 
#!
  
#*Temporal Variability and Social Heterogeneity in Disease Transmission: The Case of SARS in Hong Kong.
#@Anne Cori,Pierre-Yves Boëlle,Guy Thomas,Gabriel M. Leung,Alain-Jacques Valleron
#t2009
#cPLoS Computational Biology
#index3372655
#% 
#!
  
#*Active Dendrites Enhance Neuronal Dynamic Range.
#@Leonardo L. Gollo,Osame Kinouchi,Mauro Copelli
#t2009
#cPLoS Computational Biology
#index3372666
#% 
#!
  
#*Computational Reconstruction of Iron- and Manganese-Responsive Transcriptional Networks in α-Proteobacteria.
#@Dmitry A. Rodionov,Mikhail S. Gelfand,Jonathan D. Todd,Andrew R. J. Curson,Andrew W. B. Johnston
#t2006
#cPLoS Computational Biology
#index3372690
#% 
#!
  
#*Plato's Cave Algorithm: Inferring Functional Signaling Networks from Early Gene Expression Shadows.
#@Yishai Shimoni,Marc Y. Fink,Soon-gang Choi,Stuart C. Sealfon
#t2010
#cPLoS Computational Biology
#index3372231
#% 
#!
  
#*Drug-Induced Regulation of Target Expression.
#@Murat Iskar,Monica Campillos,Michael Kuhn,Lars Juhl Jensen,Vera van Noort,Peer Bork
#t2010
#cPLoS Computational Biology
#index3372724
#% 
#!
  
#*The Logic of EGFR/ErbB Signaling: Theoretical Properties and Analysis of High-Throughput Data.
#@Regina Samaga,Julio Saez-Rodriguez,Leonidas G. Alexopoulos,Peter K. Sorger,Steffen Klamt
#t2009
#cPLoS Computational Biology
#index3372659
#% 
#!
  
#*Identifying the Important HIV-1 Recombination Breakpoints.
#@John Archer,John W. Pinney,Jun Fan,Etienne Simon-Loriere,Eric J. Arts,Matteo Negroni,David L. Robertson
#t2008
#cPLoS Computational Biology
#index3372226
#% 
#!
  
#*PPARα siRNA-Treated Expression Profiles Uncover the Causal Sufficiency Network for Compound-Induced Liver Hypertrophy.
#@Xudong Dai,Angus T. De Souza,Hongyue Dai,David L. Lewis,Chang-kyu Lee,Andy G. Spencer,Hans Herweijer,Jim E. Hagstrom,Peter S. Linsley,Douglas E. Bassett,Roger G. Ulrich,Yudong D. He
#t2007
#cPLoS Computational Biology
#index3372119
#% 
#!
  
#*Polyglutamine Induced Misfolding of Huntingtin Exon1 is Modulated by the Flanking Sequences.
#@Vinal V. Lakhani,Feng Ding,Nikolay V. Dokholyan
#t2010
#cPLoS Computational Biology
#index3372363
#% 
#!
  
#*Modeling Cancer Progression via Pathway Dependencies.
#@Elena J. Edelman,Justin Guinney,Jen-Tsan Chi,Phillip G. Febbo,Sayan Mukherjee
#t2008
#cPLoS Computational Biology
#index3371868
#% 
#!
  
#*How Modeling Can Reconcile Apparently Discrepant Experimental Results: The Case of Pacemaking in Dopaminergic Neurons.
#@Guillaume Drion,Laurent Massotte,Rodolphe Sepulchre,Vincent Seutin
#t2011
#cPLoS Computational Biology
#index3371865
#% 
#!
  
#*Molecular Basis for Evolving Modularity in the Yeast Protein Interaction Network.
#@Ariel Fernández
#t2007
#cPLoS Computational Biology
#index3372684
#% 
#!
  
#*Stimulus Design for Model Selection and Validation in Cell Signaling.
#@Joshua F. Apgar,Jared E. Toettcher,Drew Endy,Forest M. White,Bruce Tidor
#t2008
#cPLoS Computational Biology
#index3372513
#% 
#!
  
#*A Self-Organizing State-Space-Model Approach for Parameter Estimation in Hodgkin-Huxley-Type Models of Single Neurons.
#@Dimitrios V. Vavoulis,Volko A. Straub,John A. D. Aston,Jianfeng Feng
#t2012
#cPLoS Computational Biology
#index3372394
#% 
#!
  
#*Protrusive Push versus Enveloping Embrace: Computational Model of Phagocytosis Predicts Key Regulatory Role of Cytoskeletal Membrane Anchors.
#@Marc Herant,Cheng-Yuk Lee,Micah Dembo,Volkmar Heinrich
#t2011
#cPLoS Computational Biology
#index3372374
#% 
#!
  
#*Predicting and Validating Protein Interactions Using Network Structure.
#@Pao-Yang Chen,Charlotte M. Deane,Gesine Reinert
#t2008
#cPLoS Computational Biology
#index3371988
#% 
#!
  
#*Inter-domain Communication Mechanisms in an ABC Importer: A Molecular Dynamics Study of the MalFGKE Complex.
#@A. Sofia F. Oliveira,António M. Baptista,Cláudio M. Soares
#t2011
#cPLoS Computational Biology
#index3372009
#% 
#!
  
#*Inference of Protein Complex Activities from Chemical-Genetic Profile and Its Applications: Predicting Drug-Target Pathways.
#@Sangjo Han,Dongsup Kim
#t2008
#cPLoS Computational Biology
#index3372411
#% 
#!
  
#*Eradication of Chronic Myeloid Leukemia Stem Cells: A Novel Mathematical Model Predicts No Therapeutic Benefit of Adding G-CSF to Imatinib.
#@Jasmine Foo,Mark W. Drummond,Bayard Clarkson,Tessa Holyoake,Franziska Michor
#t2009
#cPLoS Computational Biology
#index3372488
#% 
#!
  
#*Optimizing Metapopulation Sustainability through a Checkerboard Strategy.
#@Yossi Ben Zion,Gur Yaari,Nadav M. Shnerb
#t2010
#cPLoS Computational Biology
#index3372673
#% 
#!
  
#*Oxidized Calmodulin Kinase II Regulates Conduction Following Myocardial Infarction: A Computational Analysis.
#@Matthew D. Christensen,Wen Dun,Penelope A. Boyden,Mark E. Anderson,Peter J. Mohler,Thomas J. Hund
#t2009
#cPLoS Computational Biology
#index3372681
#% 
#!
  
#*Ten Simple Rules for Getting Grants.
#@Philip E. Bourne,Leo M. Chalupa
#t2006
#cPLoS Computational Biology
#index3371885
#% 
#!
  
#*Epistasis in a Model of Molecular Signal Transduction.
#@Alain Pumir,Boris Shraiman
#t2011
#cPLoS Computational Biology
#index3371952
#% 
#!
  
#*A Genomewide Functional Network for the Laboratory Mouse.
#@Yuanfang Guan,Chad L. Myers,Rong Lu,Ihor Lemischka,Carol J. Bult,Olga G. Troyanskaya
#t2008
#cPLoS Computational Biology
#index3372422
#% 
#!
  
#*Stochastically Gating Ion Channels Enable Patterned Spike Firing through Activity-Dependent Modulation of Spike Probability.
#@Joshua T. Dudman,Matthew F. Nolan
#t2009
#cPLoS Computational Biology
#index3371858
#% 
#!
  
#*Thousands of Rab GTPases for the Cell Biologist.
#@Yoan Diekmann,Elsa Seixas,Marc Gouw,Filipe Tavares-Cadete,Miguel C. Seabra,José B. Pereira-Leal
#t2011
#cPLoS Computational Biology
#index3372654
#% 
#!
  
#*Ten Simple Rules for Getting Involved in Your Scientific Community.
#@Magali Michaut
#t2011
#cPLoS Computational Biology
#index3372109
#% 
#!
  
#*Dynamic Changes in Protein Functional Linkage Networks Revealed by Integration with Gene Expression Data.
#@Shubhada R. Hegde,Palanisamy Manimaran,Shekhar C. Mande
#t2008
#cPLoS Computational Biology
#index3372338
#% 
#!
  
#*Lipid Exchange Mechanism of the Cholesteryl Ester Transfer Protein Clarified by Atomistic and Coarse-grained Simulations.
#@Artturi Koivuniemi,Timo Vuorela,Petri T. Kovanen,Ilpo Vattulainen,Marja T. Hyvönen
#t2012
#cPLoS Computational Biology
#index3371938
#% 
#!
  
#*Predicting Binding to P-Glycoprotein by Flexible Receptor Docking.
#@Elena Dolghih,Clifford Bryant,Adam R. Renslo,Matthew P. Jacobson
#t2011
#cPLoS Computational Biology
#index3372459
#% 
#!
  
#*Adaptation and Selective Information Transmission in the Cricket Auditory Neuron AN2.
#@Klaus Wimmer,K. Jannis Hildebrandt,R. Matthias Hennig,Klaus Obermayer
#t2008
#cPLoS Computational Biology
#index3372101
#% 
#!
  
#*Living on Three Time Scales: The Dynamics of Plasma Cell and Antibody Populations Illustrated for Hepatitis A Virus.
#@Mathieu Andraud,Olivier Lejeune,Jammbe Z. Musoro,Benson Ogunjimi,Philippe Beutels,Niel Hens
#t2012
#cPLoS Computational Biology
#index3372838
#% 
#!
  
#*Prediction of Gene Expression in Embryonic Structures of .
#@Anastasia Samsonova,Mahesan Niranjan,Steven Russell,Alvis Brazma
#t2007
#cPLoS Computational Biology
#index3372746
#% 
#!
  
#*Developing Computational Biology.
#@Philip E. Bourne,Steven E. Brenner
#t2007
#cPLoS Computational Biology
#index3372019
#% 
#!
  
#*Towards a System Level Understanding of Non-Model Organisms Sampled from the Environment: A Network Biology Approach.
#@Tim D. Williams,Nil Turan,Amer M. Diab,Huifeng Wu,Carolynn Mackenzie,Katie L. Bartie,Olga Hrydziuszko,Brett P. Lyons,Grant D. Stentiford,John M. Herbert,Joseph K. Abraham,Ioanna Katsiadaki,Michael J. Leaver,John B. Taggart,Stephen G. George,Mark R. Viant,Kevin J. Chipman,Francesco Falciani
#t2011
#cPLoS Computational Biology
#index3372815
#% 
#!
  
#*Gene Circuit Analysis of the Terminal Gap Gene .
#@Maksat Ashyraliyev,Ken Siggens,Hilde Janssens,Joke Blom,Michael Akam,Johannes Jaeger
#t2009
#cPLoS Computational Biology
#index3372514
#% 
#!
  
#*Transient Calcium and Dopamine Increase PKA Activity and DARPP-32 Phosphorylation.
#@Maria Lindskog,Myungsook Kim,Martin Wikström,Kim T. Blackwell,Jeanette Hellgren Kotaleski
#t2006
#cPLoS Computational Biology
#index3371970
#% 
#!
  
#*Drug Discovery Using Chemical Systems Biology: Identification of the Protein-Ligand Binding Network To Explain the Side Effects of CETP Inhibitors.
#@Li Xie,Jerry Li,Lei Xie,Philip E. Bourne
#t2009
#cPLoS Computational Biology
#index3372450
#% 
#!
  
#*Ten Simple Rules for Reviewers.
#@Philip E. Bourne,Alon Korngreen
#t2006
#cPLoS Computational Biology
#index3371929
#% 
#!
  
#*Human Leg Model Predicts Ankle Muscle-Tendon Morphology, State, Roles and Energetics in Walking.
#@Pavitra Krishnaswamy,Emery N. Brown,Hugh M. Herr
#t2011
#cPLoS Computational Biology
#index3372516
#% 
#!
  
#*A Universal Mechanism Ties Genotype to Phenotype in Trinucleotide Diseases.
#@Shai Kaplan,Shalev Itzkovitz,Ehud Y. Shapiro
#t2007
#cPLoS Computational Biology
#index3372076
#% 
#!
  
#*Neocortical Axon Arbors Trade-off Material and Conduction Delay Conservation.
#@Julian M. L. Budd,Krisztina Kovács,Alex S. Ferecskó,Péter Buzás,Ulf T. Eysel,Zoltán F. Kisvárday
#t2010
#cPLoS Computational Biology
#index3372149
#% 
#!
  
#*Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes.
#@Morgan N. Price,Paramvir S. Dehal,Adam P. Arkin
#t2007
#cPLoS Computational Biology
#index3372634
#% 
#!
  
#*Smoothing of, and Parameter Estimation from, Noisy Biophysical Recordings.
#@Quentin J. M. Huys,Liam Paninski
#t2009
#cPLoS Computational Biology
#index3372112
#% 
#!
  
#*Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites.
#@Daniela Raijman,Ron Shamir,Amos Tanay
#t2008
#cPLoS Computational Biology
#index3372043
#% 
#!
  
#*Global Analysis of Small Molecule Binding to Related Protein Targets.
#@Felix A. Kruger,John P. Overington
#t2012
#cPLoS Computational Biology
#index3371978
#% 
#!
  
#*Computational Analysis of Whole-Genome Differential Allelic Expression Data in Human.
#@James R. Wagner,Bing Ge,Dmitry Pokholok,Kevin L. Gunderson,Tomi Pastinen,Mathieu Blanchette
#t2010
#cPLoS Computational Biology
#index3372639
#% 
#!
  
#*A Statistical Framework for Modeling HLA-Dependent T Cell Response Data.
#@Jennifer Listgarten,Nicole Frahm,Carl Myers Kadie,Christian Brander,David Heckerman
#t2007
#cPLoS Computational Biology
#index3371964
#% 
#!
  
#*Getting Started in Biological Pathway Construction and Analysis.
#@Ganesh A. Viswanathan,Jeremy Seto,Sonali Patil,German Nudelman,Stuart C. Sealfon
#t2008
#cPLoS Computational Biology
#index3372254
#% 
#!
  
#*Mutation Bias Favors Protein Folding Stability in the Evolution of Small Populations.
#@Raul Mendez,Miriam Fritsche,Markus Porto,Ugo Bastolla
#t2010
#cPLoS Computational Biology
#index3371873
#% 
#!
  
#*Heat Shock Partially Dissociates the Overlapping Modules of the Yeast Protein-Protein Interaction Network: A Systems Level Model of Adaptation.
#@Ágoston Mihalik,Peter Csermely
#t2011
#cPLoS Computational Biology
#index3372498
#% 
#!
  
#*Genomic Variability within an Organism Exposes Its Cell Lineage Tree.
#@Dan Frumkin,Adam Wasserstrom,Shai Kaplan,Uriel Feige,Ehud Y. Shapiro
#t2005
#cPLoS Computational Biology
#index3372215
#% 
#!
  
#*A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes.
#@Daniel H. Haft,Jeremy D. Selengut,Emmanuel F. Mongodin,Karen E. Nelson
#t2005
#cPLoS Computational Biology
#index3372236
#% 
#!
  
#*Open Access: Taking Full Advantage of the Content.
#@Philip E. Bourne,J. Lynn Fink,Mark Gerstein
#t2008
#cPLoS Computational Biology
#index3372638
#% 
#!
  
#*Integrated Assessment and Prediction of Transcription Factor Binding.
#@Andreas Beyer,Christopher T. Workman,Jens Hollunder,Dörte Radke,Ulrich Möller,Thomas Wilhelm,Trey Ideker
#t2006
#cPLoS Computational Biology
#index3372506
#% 
#!
  
#*Storage of Correlated Patterns in Standard and Bistable Purkinje Cell Models.
#@Claudia Clopath,Jean-Pierre Nadal,Nicolas Brunel
#t2012
#cPLoS Computational Biology
#index3372167
#% 
#!
  
#*Positional Information Generated by Spatially Distributed Signaling Cascades.
#@Javier Muñoz-García,Zoltan Neufeld,Boris N. Kholodenko
#t2009
#cPLoS Computational Biology
#index3372373
#% 
#!
  
#*Human Cancer Protein-Protein Interaction Network: A Structural Perspective.
#@Gozde Kar,Attila Gürsoy,Ozlem Keskin
#t2009
#cPLoS Computational Biology
#index3372844
#% 
#!
  
#*Impact of Sarcoplasmic Reticulum Calcium Release on Calcium Dynamics and Action Potential Morphology in Human Atrial Myocytes: A Computational Study.
#@Jussi T. Koivumäki,Topi Korhonen,Pasi Tavi
#t2011
#cPLoS Computational Biology
#index3371958
#% 
#!
  
#*Connectivity, Cycles, and Persistence Thresholds in Metapopulation Networks.
#@Yael Artzy-Randrup,Lewi Stone
#t2010
#cPLoS Computational Biology
#index3372437
#% 
#!
  
#*Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases.
#@Jiguang Wang,Shi-Hua Zhang,Yong Wang,Luonan Chen,Xiang-Sun Zhang
#t2009
#cPLoS Computational Biology
#index3372000
#% 
#!
  
#*Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance.
#@Yuan-Yuan Li,Hui Yu,Zong-Ming Guo,Ting-Qing Guo,Kang Tu,Yi-Xue Li
#t2006
#cPLoS Computational Biology
#index3371845
#% 
#!
  
#*Promoter Complexity and Tissue-Specific Expression of Stress Response Components in , a Sessile Marine Invertebrate Species.
#@Chrysa Pantzartzi,Elena Drosopoulou,Minas Yiangou,Ignat Drozdov,Sophia Tsoka,Christos A. Ouzounis,Zacharias G. Scouras
#t2010
#cPLoS Computational Biology
#index3372810
#% 
#!
  
#*Traffic Instabilities in Self-Organized Pedestrian Crowds.
#@Mehdi Moussaïd,Elsa G. Guillot,Mathieu Moreau,Jérôme Fehrenbach,Olivier Chabiron,Samuel Lemercier,Julien Pettré,Cécile Appert-Rolland,Pierre Degond,Guy Theraulaz
#t2012
#cPLoS Computational Biology
#index3372100
#% 
#!
  
#*Pairwise Maximum Entropy Models for Studying Large Biological Systems: When They Can Work and When They Can't.
#@Yasser Roudi,Sheila Nirenberg,Peter E. Latham
#t2009
#cPLoS Computational Biology
#index3372034
#% 
#!
  
#*Spatial Acuity and Prey Detection in Weakly Electric Fish.
#@David Babineau,John E. Lewis,André Longtin
#t2007
#cPLoS Computational Biology
#index3372130
#% 
#!
  
#*A Review of 2011 for .
#@Rosemary Dickin,Chris James Hall,Laura K. Taylor,Andrew M. Collings,Ruth Nussinov,Philip E. Bourne
#t2012
#cPLoS Computational Biology
#index3372773
#% 
#!
  
#*Metabolic Factors Limiting Performance in Marathon Runners.
#@Benjamin I. Rapoport
#t2010
#cPLoS Computational Biology
#index3372760
#% 
#!
  
#*How Does Cross-Reactive Stimulation Affect the Longevity of CD8+ T Cell Memory?
#@Vitaly V. Ganusov,Sergei S. Pilyugin,Rafi Ahmed,Rustom Antia
#t2006
#cPLoS Computational Biology
#index3372780
#% 
#!
  
#*Detecting Network Communities: An Application to Phylogenetic Analysis.
#@Roberto F. S. Andrade,Ivan C. Rocha-Neto,Leonardo B. L. Santos,Charles N. de Santana,Marcelo V. C. Diniz,Thierry Petit Lobão,Aristoteles Goes-Neto,Suani T. R. Pinho,Charbel Niño El-Hani
#t2011
#cPLoS Computational Biology
#index3372037
#% 
#!
  
#*Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges.
#@Purvesh Khatri,Marina Sirota,Atul J. Butte
#t2012
#cPLoS Computational Biology
#index3372834
#% 
#!
  
#*Decrypting the Sequence of Structural Events during the Gating Transition of Pentameric Ligand-Gated Ion Channels Based on an Interpolated Elastic Network Model.
#@Wenjun Zheng,Anthony Auerbach
#t2011
#cPLoS Computational Biology
#index3372823
#% 
#!
  
#*Trade-off between Positive and Negative Design of Protein Stability: From Lattice Models to Real Proteins.
#@Orly Noivirt-Brik,Amnon Horovitz,Ron Unger
#t2009
#cPLoS Computational Biology
#index3372709
#% 
#!
  
#*Recovering Protein-Protein and Domain-Domain Interactions from Aggregation of IP-MS Proteomics of Coregulator Complexes.
#@Amin R. Mazloom,Ruth Dannenfelser,Neil R. Clark,Arsen V. Grigoryan,Kathryn M. Linder,Timothy Cardozo,Julia C. Bond,Aislyn D. W. Boran,Ravi Iyengar,Anna Malovannaya,Rainer B. Lanz,Avi Ma'ayan
#t2011
#cPLoS Computational Biology
#index3371836
#% 
#!
  
#*A Dynamical Model Reveals Gene Co-Localizations in Nucleus.
#@Jing Kang,Bing Xu,Ye Yao,Wei Lin,Conor Hennessy,Peter Fraser,Jianfeng Feng
#t2011
#cPLoS Computational Biology
#index3372779
#% 
#!
  
#*Slope-Based Stochastic Resonance: How Noise Enables Phasic Neurons to Encode Slow Signals.
#@Yan Gai,Brent Doiron,John Rinzel
#t2010
#cPLoS Computational Biology
#index3372627
#% 
#!
  
#*On the Effect of Thermodynamic Equilibrium on the Assembly Efficiency of Complex Multi-Layered Virus-Like Particles (VLP): the Case of Rotavirus VLP.
#@António Roldão,Maria Candida M. Mellado,J. C. Lima,Manuel J. T. Carrondo,Paula M. Alves,Rui Oliveira
#t2012
#cPLoS Computational Biology
#index3371981
#% 
#!
  
#*Relating Neuronal Firing Patterns to Functional Differentiation of Cerebral Cortex.
#@Shigeru Shinomoto,Hideaki Kim,Takeaki Shimokawa,Nanae Matsuno,Shintaro Funahashi,Keisetsu Shima,Ichiro Fujita,Hiroshi Tamura,Taijiro Doi,Kenji Kawano,Naoko Inaba,Kikuro Fukushima,Sergei Kurkin,Kiyoshi Kurata,Masato Taira,Ken-Ichiro Tsutsui,Hidehiko Komatsu,Tadashi Ogawa,Kowa Koida,Jun Tanji,Keisuke Toyama
#t2009
#cPLoS Computational Biology
#index3372802
#% 
#!
  
#*Computational Model Explains High Activity and Rapid Cycling of Rho GTPases within Protein Complexes.
#@Andrew B. Goryachev,Alexandra V. Pokhilko
#t2006
#cPLoS Computational Biology
#index3372042
#% 
#!
  
#*A Kinetic Model of Trp-Cage Folding from Multiple Biased Molecular Dynamics Simulations.
#@Fabrizio Marinelli,Fabio Pietrucci,Alessandro Laio,Stefano Piana
#t2009
#cPLoS Computational Biology
#index3371949
#% 
#!
  
#*Intrinsic Gain Modulation and Adaptive Neural Coding.
#@Sungho Hong,Brian Nils Lundstrom,Adrienne L. Fairhall
#t2008
#cPLoS Computational Biology
#index3372591
#% 
#!
  
#*Modeling the Evolution of Regulatory Elements by Simultaneous Detection and Alignment with Phylogenetic Pair HMMs.
#@William H. Majoros,Uwe Ohler
#t2010
#cPLoS Computational Biology
#index3372269
#% 
#!
  
#*Coupled Information Diffusion-Pest Dynamics Models Predict Delayed Benefits of Farmer Cooperation in Pest Management Programs.
#@François Rebaudo,Olivier Dangles
#t2011
#cPLoS Computational Biology
#index3372691
#% 
#!
  
#*Minimization of Biosynthetic Costs in Adaptive Gene Expression Responses of Yeast to Environmental Changes.
#@Ester Vilaprinyó,Rui Alves,Albert Sorribas
#t2010
#cPLoS Computational Biology
#index3372194
#% 
#!
  
#*FINDSITE: A Threading-Based Approach to Ligand Homology Modeling.
#@Michal Brylinski,Jeffrey Skolnick
#t2009
#cPLoS Computational Biology
#index3372055
#% 
#!
  
#*Structure-Guided Comparative Analysis of Proteins: Principles, Tools, and Applications for Predicting Function.
#@Raja Mazumder,Sona Vasudevan
#t2008
#cPLoS Computational Biology
#index3372777
#% 
#!
  
#*Positive Evolutionary Selection of an HD Motif on Alzheimer Precursor Protein Orthologues Suggests a Functional Role.
#@István Miklós,Zoltán Zádori
#t2012
#cPLoS Computational Biology
#index3372315
#% 
#!
  
#*Chemotaxis when Bacteria Remember: Drift versus Diffusion.
#@Sakuntala Chatterjee,Rava Azeredo da Silveira,Yariv Kafri
#t2011
#cPLoS Computational Biology
#index3372648
#% 
#!
  
#*The Impact of Oxygen on Metabolic Evolution: A Chemoinformatic Investigation.
#@Ying-Ying Jiang,De-Xin Kong,Tao Qin,Xiao Li,Gustavo Caetano-Anollés,Hong-Yu Zhang
#t2012
#cPLoS Computational Biology
#index3372702
#% 
#!
  
#*Using Likelihood-Free Inference to Compare Evolutionary Dynamics of the Protein Networks of and .
#@Oliver Ratmann,Ole Jørgensen,Trevor Hinkley,Michael P. H. Stumpf,Sylvia Richardson,Carsten Wiuf
#t2007
#cPLoS Computational Biology
#index3372620
#% 
#!
  
#*Testing the Ortholog Conjecture with Comparative Functional Genomic Data from Mammals.
#@Nathan L. Nehrt,Wyatt T. Clark,Predrag Radivojac,Matthew W. Hahn
#t2011
#cPLoS Computational Biology
#index3372584
#% 
#!
  
#*A Multi-Variant, Viral Dynamic Model of Genotype 1 HCV to Assess the Evolution of Protease-Inhibitor Resistant Variants.
#@Bambang S. Adiwijaya,Eva Herrmann,Brian Hare,Tara L. Kieffer,Chao Lin,Ann D. Kwong,Varun Garg,John C. R. Randle,Christoph Sarrazin,Stefan Zeuzem,Paul R. Caron
#t2010
#cPLoS Computational Biology
#index3372200
#% 
#!
  
#*Towards an Evolutionary Model of Transcription Networks.
#@Dan Xie,Chieh-Chun Chen,Xin He,Xiaoyi Cao,Sheng Zhong
#t2011
#cPLoS Computational Biology
#index3372480
#% 
#!
  
#*Susceptibility to Superhelically Driven DNA Duplex Destabilization: A Highly Conserved Property of Yeast Replication Origins.
#@Prashanth Ak,Craig J. Benham
#t2005
#cPLoS Computational Biology
#index3372091
#% 
#!
  
#*Inference of Genotype-Phenotype Relationships in the Antigenic Evolution of Human Influenza A (H3N2) Viruses.
#@Lars Steinbrück,Alice Carolyn McHardy
#t2012
#cPLoS Computational Biology
#index3372564
#% 
#!
  
#*Gene Expression Divergence is Coupled to Evolution of DNA Structure in Coding Regions.
#@Zhiming Dai,Xianhua Dai
#t2011
#cPLoS Computational Biology
#index3372185
#% 
#!
  
#*Control of Cation Permeation through the Nicotinic Receptor Channel.
#@Hai-Long Wang,Xiaolin Cheng,Palmer Taylor,James Andrew McCammon,Steven M. Sine
#t2008
#cPLoS Computational Biology
#index3372528
#% 
#!
  
#*Understanding the Adaptive Growth Strategy of by Optimisation.
#@Bas Teusink,Anne Wiersma,Leo Jacobs,Richard A. Notebaart,Eddy J. Smid
#t2009
#cPLoS Computational Biology
#index3372299
#% 
#!
  
#*A Review of 2010 for .
#@Rosemary Dickin,Cecy Marden,Andrew M. Collings,Ruth Nussinov,Philip E. Bourne
#t2011
#cPLoS Computational Biology
#index3372801
#% 
#!
  
#*Identification of Hammerhead Ribozymes in All Domains of Life Reveals Novel Structural Variations.
#@Jonathan Perreault,Zasha Weinberg,Adam Roth,Olivia Popescu,Pascal Chartrand,Gerardo Ferbeyre,Ronald R. Breaker
#t2011
#cPLoS Computational Biology
#index3372602
#% 
#!
  
#*Single Sample Expression-Anchored Mechanisms Predict Survival in Head and Neck Cancer.
#@Xinan Yang,Kelly Regan,Yong Huang,Qingbei Zhang,Jianrong Li,Tanguy Y. Seiwert,Ezra E. W. Cohen,H. Rosie Xing,Yves A. Lussier
#t2012
#cPLoS Computational Biology
#index3372070
#% 
#!
  
#*Predicting the Distribution of Spiral Waves from Cell Properties in a Developmental-Path Model of Pattern Formation.
#@Daniel Geberth,Marc-Thorsten Hütt
#t2009
#cPLoS Computational Biology
#index3372159
#% 
#!
  
#*Computational Lipidology: Predicting Lipoprotein Density Profiles in Human Blood Plasma.
#@Katrin Hübner,Thomas Schwager,Karl Winkler,Jens-Georg Reich,Hermann-Georg Holzhütter
#t2008
#cPLoS Computational Biology
#index3372259
#% 
#!
  
#*Trade-Offs and Constraints in Allosteric Sensing.
#@Bruno M. C. Martins,Peter S. Swain
#t2011
#cPLoS Computational Biology
#index3372195
#% 
#!
  
#*Alterations in Brain Connectivity Underlying Beta Oscillations in Parkinsonism.
#@Rosalyn J. Moran,Nicolas Mallet,Vladimir Litvak,Raymond J. Dolan,Peter J. Magill,Karl J. Friston,Peter Brown
#t2011
#cPLoS Computational Biology
#index3372279
#% 
#!
  
#*A Role for Both Conformational Selection and Induced Fit in Ligand Binding by the LAO Protein.
#@Daniel-Adriano Silva,Gregory R. Bowman,Alejandro Sosa-Peinado,Xuhui Huang
#t2011
#cPLoS Computational Biology
#index3372645
#% 
#!
  
#*Structure Learning in Human Sequential Decision-Making.
#@Daniel Acuña,Paul R. Schrater
#t2010
#cPLoS Computational Biology
#index3372731
#% 
#!
  
#*Brain Anatomical Network and Intelligence.
#@Yonghui Li,Yong Liu,Jun Li,Wen Qin,Kuncheng Li,Chunshui Yu,Tianzi Jiang
#t2009
#cPLoS Computational Biology
#index3372798
#% 
#!
  
#*Numerical Analysis of Ca Signaling in Rat Ventricular Myocytes with Realistic Transverse-Axial Tubular Geometry and Inhibited Sarcoplasmic Reticulum.
#@Yuhui Cheng,Zeyun Yu,Masahiko Hoshijima,Michael J. Holst,Andrew D. McCulloch,James Andrew McCammon,Anushka Michailova
#t2010
#cPLoS Computational Biology
#index3372571
#% 
#!
  
#*Towards Complete Sets of Farnesylated and Geranylgeranylated Proteins.
#@Sebastian Maurer-Stroh,Manfred Koranda,Wolfgang Benetka,Georg Schneider,Fernanda L. Sirota,Frank Eisenhaber
#t2007
#cPLoS Computational Biology
#index3372213
#% 
#!
  
#*Amyloidogenesis Abolished by Proline Substitutions but Enhanced by Lipid Binding.
#@Ping Jiang,Weixin Xu,Yuguang Mu
#t2009
#cPLoS Computational Biology
#index3372292
#% 
#!
  
#*Modeling ChIP Sequencing In Silico with Applications.
#@Zhengdong D. Zhang,Joel S. Rozowsky,Michael Snyder,Joseph T. Chang,Mark Gerstein
#t2008
#cPLoS Computational Biology
#index3372337
#% 
#!
  
#*Modeling Cortisol Dynamics in the Neuro-endocrine Axis Distinguishes Normal, Depression, and Post-traumatic Stress Disorder (PTSD) in Humans.
#@K. Sriram,Maria Rodriguez-Fernandez,Francis J. Doyle III
#t2012
#cPLoS Computational Biology
#index3372282
#% 
#!
  
#*Modelling the Self-Assembly of Elastomeric Proteins Provides Insights into the Evolution of Their Domain Architectures.
#@Hongyan Song,John Parkinson
#t2012
#cPLoS Computational Biology
#index3372816
#% 
#!
  
#*Biosynthetic Potentials of Metabolites and Their Hierarchical Organization.
#@Franziska Matthäus,Carlos Salazar,Oliver Ebenhöh
#t2008
#cPLoS Computational Biology
#index3372020
#% 
#!
  
#*Deterministic Mechanical Model of T-Killer Cell Polarization Reproduces the Wandering of Aim between Simultaneously Engaged Targets.
#@Mun Ju Kim,Ivan V. Maly
#t2009
#cPLoS Computational Biology
#index3372582
#% 
#!
  
#*Phase-Locked Signals Elucidate Circuit Architecture of an Oscillatory Pathway.
#@Andreja Jovic,Bryan Howell,Michelle Cote,Susan M. Wade,Khamir Mehta,Atsushi Miyawaki,Richard R. Neubig,Jennifer J. Linderman,Shuichi Takayama
#t2010
#cPLoS Computational Biology
#index3372452
#% 
#!
  
#*Multi-Scale Simulations Provide Supporting Evidence for the Hypothesis of Intramolecular Protein Translocation in GroEL/GroES Complexes.
#@Ivan Coluzza,Alfonso De Simone,Franca Fraternali,Daan Frenkel
#t2008
#cPLoS Computational Biology
#index3371888
#% 
#!
  
#*Correction: Specificity and Evolvability in Eukaryotic Protein Interaction Networks.
#@Pedro Beltrão,Luis Serrano
#t2007
#cPLoS Computational Biology
#index3372158
#% 
#!
  
#*Ten Simple Rules for Getting Help from Online Scientific Communities.
#@Giovanni Marco Dall'Olio,Jacopo Marino,Michael Schubert,Kevin L. Keys,Melanie I. Stefan,Colin S. Gillespie,Pierre Poulain,Khader Shameer,Robert Sugar,Brandon M. Invergo,Lars Juhl Jensen,Jaume Bertranpetit,Hafid Laayouni
#t2011
#cPLoS Computational Biology
#index3372239
#% 
#!
  
#*The Effect of Stochasticity on the Operon: An Evolutionary Perspective.
#@Milan van Hoek,Paulien Hogeweg
#t2007
#cPLoS Computational Biology
#index3372127
#% 
#!
  
#*Identification of Key Processes that Control Tumor Necrosis Factor Availability in a Tuberculosis Granuloma.
#@Mohammad Fallahi-Sichani,Matthew A. Schaller,Denise E. Kirschner,Steven L. Kunkel,Jennifer J. Linderman
#t2010
#cPLoS Computational Biology
#index3372447
#% 
#!
  
#*Getting Started in Text Mining: Part Two.
#@Andrey Rzhetsky,Michael R. Seringhaus,Mark B. Gerstein
#t2009
#cPLoS Computational Biology
#index3372424
#% 
#!
  
#*A Critical Quantity for Noise Attenuation in Feedback Systems.
#@Liming Wang,Jack Xin,Qing Nie
#t2010
#cPLoS Computational Biology
#index3371830
#% 
#!
  
#*Stealth Proteins: In Silico Identification of a Novel Protein Family Rendering Bacterial Pathogens Invisible to Host Immune Defense.
#@Peter Sperisen,Christoph D. Schmid,Philipp Bucher,Olav Zilian
#t2005
#cPLoS Computational Biology
#index3372485
#% 
#!
  
#*Outlook on Thailand's Genomics and Computational Biology Research and Development.
#@Wannipha Tongsima,Sissades Tongsima,Prasit Palittapongarnpim
#t2008
#cPLoS Computational Biology
#index3371879
#% 
#!
  
#*The Evolution of Robust Development and Homeostasis in Artificial Organisms.
#@David Basanta,Mark A. Miodownik,Buzz Baum
#t2008
#cPLoS Computational Biology
#index3371860
#% 
#!
  
#*Emergence of Functional Hierarchy in a Multiple Timescale Neural Network Model: A Humanoid Robot Experiment.
#@Yuichi Yamashita,Jun Tani
#t2008
#cPLoS Computational Biology
#index3372393
#% 
#!
  
#*A Primer on Metagenomics.
#@John C. Wooley,Adam Godzik,Iddo Friedberg
#t2010
#cPLoS Computational Biology
#index3372356
#% 
#!
  
#*Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology.
#@Stefano Ciliberti,Olivier C. Martin,Andreas Wagner
#t2007
#cPLoS Computational Biology
#index3372346
#% 
#!
  
#*Global Entrainment of Transcriptional Systems to Periodic Inputs.
#@Giovanni Russo,Mario di Bernardo,Eduardo D. Sontag
#t2010
#cPLoS Computational Biology
#index3371851
#% 
#!
  
#*A New Community Journal.
#@Philip E. Bourne,Steven E. Brenner,Michael B. Eisen
#t2005
#cPLoS Computational Biology
#index3372758
#% 
#!
  
#*Large-Scale Discovery of Promoter Motifs in .
#@Thomas A. Down,Casey M. Bergman,Jing Su,Tim J. P. Hubbard
#t2007
#cPLoS Computational Biology
#index3372541
#% 
#!
  
#*Enhancer Responses to Similarly Distributed Antagonistic Gradients in Development.
#@Robert P. Zinzen,Dmitri A. Papatsenko
#t2007
#cPLoS Computational Biology
#index3372403
#% 
#!
  
#*A Review of 2008 for .
#@Evie Browne,Rosemary Dickin,Philip E. Bourne
#t2009
#cPLoS Computational Biology
#index3372108
#% 
#!
  
#*Evaluation of the Oscillatory Interference Model of Grid Cell Firing through Analysis and Measured Period Variance of Some Biological Oscillators.
#@Eric A. Zilli,Motoharu Yoshida,Babak Tahvildari,Lisa M. Giocomo,Michael E. Hasselmo
#t2009
#cPLoS Computational Biology
#index3372442
#% 
#!
  
#*Reactive Oxygen Species Production by Forward and Reverse Electron Fluxes in the Mitochondrial Respiratory Chain.
#@Vitaly A. Selivanov,Tatyana V. Votyakova,Violetta N. Pivtoraiko,Jennifer Zeak,Tatiana Sukhomlin,Massimo Trucco,Josep Roca,Marta Cascante
#t2011
#cPLoS Computational Biology
#index3372347
#% 
#!
  
#*Functional Representation of Enzymes by Specific Peptides.
#@Vered Kunik,Yasmine Meroz,Zach Solan,Ben Sandbank,Uri Weingart,Eytan Ruppin,David Horn
#t2007
#cPLoS Computational Biology
#index3372249
#% 
#!
  
#*A Kinetic Model of Dopamine- and Calcium-Dependent Striatal Synaptic Plasticity.
#@Takashi Nakano,Tomokazu Doi,Junichiro Yoshimoto,Kenji Doya
#t2010
#cPLoS Computational Biology
#index3372493
#% 
#!
  
#*A Numerical Approach to Ion Channel Modelling Using Whole-Cell Voltage-Clamp Recordings and a Genetic Algorithm.
#@Meron Gurkiewicz,Alon Korngreen
#t2007
#cPLoS Computational Biology
#index3372525
#% 
#!
  
#*Challenges Predicting Ligand-Receptor Interactions of Promiscuous Proteins: The Nuclear Receptor PXR.
#@Sean Ekins,Sandhya Kortagere,Manisha Iyer,Erica J. Reschly,Markus A. Lill,Matthew R. Redinbo,Matthew D. Krasowski
#t2009
#cPLoS Computational Biology
#index3372843
#% 
#!
  
#*A Boolean Model of the Gene Regulatory Network Underlying Mammalian Cortical Area Development.
#@Clare E. Giacomantonio,Geoffrey J. Goodhill
#t2010
#cPLoS Computational Biology
#index3372383
#% 
#!
  
#*Feedback Control Architecture and the Bacterial Chemotaxis Network.
#@Abdullah Hamadeh,Mark A. J. Roberts,Elias August,Patrick E. McSharry,Philip K. Maini,Judith P. Armitage,Antonis Papachristodoulou
#t2011
#cPLoS Computational Biology
#index3372421
#% 
#!
  
#*Integrative Features of the Yeast Phosphoproteome and Protein-Protein Interaction Map.
#@Nozomu Yachie,Rintaro Saito,Naoyuki Sugiyama,Masaru Tomita,Yasushi Ishihama
#t2011
#cPLoS Computational Biology
#index3372609
#% 
#!
  
#*Synchronization of Firing in Cortical Fast-Spiking Interneurons at Gamma Frequencies: A Phase-Resetting Analysis.
#@Nathan W. Gouwens,Hugo Zeberg,Kunichika Tsumoto,Takashi Tateno,Kazuyuki Aihara,Hugh P. C. Robinson
#t2010
#cPLoS Computational Biology
#index3372180
#% 
#!
  
#*Untangling the Interplay between Epidemic Spread and Transmission Network Dynamics.
#@Christel Kamp
#t2010
#cPLoS Computational Biology
#index3372162
#% 
#!
  
#*The Homeostasis of -Infected Red Blood Cells.
#@Jakob M. A. Mauritz,Alessandro Esposito,Hagai Ginsburg,Clemens F. Kaminski,Teresa Tiffert,Virgilio L. Lew
#t2009
#cPLoS Computational Biology
#index3371986
#% 
#!
  
#*Spike-Based Population Coding and Working Memory.
#@Martin Boerlin,Sophie Deneve
#t2011
#cPLoS Computational Biology
#index3371853
#% 
#!
  
#*Effects of Electrical and Structural Remodeling on Atrial Fibrillation Maintenance: A Simulation Study.
#@Trine Krogh-Madsen,Geoffrey W. Abbott,David J. Christini
#t2012
#cPLoS Computational Biology
#index3372765
#% 
#!
  
#*Flexible Cognitive Strategies during Motor Learning.
#@Jordan A. Taylor,Richard B. Ivry
#t2011
#cPLoS Computational Biology
#index3371944
#% 
#!
  
#*Modeling Chemotaxis Reveals the Role of Reversed Phosphotransfer and a Bi-Functional Kinase-Phosphatase.
#@Marcus J. Tindall,Steven L. Porter,Philip K. Maini,Judith P. Armitage
#t2010
#cPLoS Computational Biology
#index3372554
#% 
#!
  
#*Analysis of the Apolipoprotein E and the Amyloid Peptide Interaction: Misfolding Induced by Frustration of the Salt Bridge Network.
#@Jinghui Luo,Jean-Didier Maréchal,Sebastian Wärmländer,Astrid Gräslund,Alex Perálvarez-Marín
#t2010
#cPLoS Computational Biology
#index3372077
#% 
#!
  
#*A Predictive Model of the Oxygen and Heme Regulatory Network in Yeast.
#@Anshul Kundaje,Xiantong Xin,Changgui Lan,Steve Lianoglou,Mei Zhou,Li Zhang,Christina S. Leslie
#t2008
#cPLoS Computational Biology
#index3372546
#% 
#!
  
#*Correction: Spatiotemporal Expression Control Correlates with Intragenic Scaffold Matrix Attachment Regions (S/MARs) in .
#@Igor V. Tetko,Georg Haberer,Stephen Rudd,Blake C. Meyers,Hans-Werner Mewes,Klaus F. X. Mayer
#t2006
#cPLoS Computational Biology
#index3372618
#% 
#!
  
#*Computational Mass Spectrometry-Based Proteomics.
#@Lukas Käll,Olga Vitek
#t2011
#cPLoS Computational Biology
#index3372072
#% 
#!
  
#*Noise Reduction by Diffusional Dissipation in a Minimal Quorum Sensing Motif.
#@Yu Tanouchi,Dennis Tu,Jungsang Kim,Lingchong You
#t2008
#cPLoS Computational Biology
#index3372742
#% 
#!
  
#*Deprotonation by Dehydration: The Origin of Ammonium Sensing in the AmtB Channel.
#@David L. Bostick,Charles L. Brooks III
#t2007
#cPLoS Computational Biology
#index3372401
#% 
#!
  
#*Computational Ecology: From the Complex to the Simple and Back.
#@Mercedes Pascual
#t2005
#cPLoS Computational Biology
#index3372561
#% 
#!
  
#*A Balanced Memory Network.
#@Yasser Roudi,Peter E. Latham
#t2007
#cPLoS Computational Biology
#index3372508
#% 
#!
  
#*Bioinformatics in China: A Personal Perspective.
#@Liping Wei,Jun Yu
#t2008
#cPLoS Computational Biology
#index3372198
#% 
#!
  
#*Dual Coding with STDP in a Spiking Recurrent Neural Network Model of the Hippocampus.
#@Daniel Bush,Andrew Philippides,Phil Husbands,Michael O'Shea
#t2010
#cPLoS Computational Biology
#index3372787
#% 
#!
  
#*A Mathematical Methodology for Determining the Temporal Order of Pathway Alterations Arising during Gliomagenesis.
#@Yu-Kang Cheng,Rameen Beroukhim,Ross L. Levine,Ingo K. Mellinghoff,Eric C. Holland,Franziska Michor
#t2012
#cPLoS Computational Biology
#index3371902
#% 
#!
  
#*In Silico Detection of Sequence Variations Modifying Transcriptional Regulation.
#@Malin C. Andersen,Pär G. Engström,Stuart Lithwick,David J. Arenillas,Per Eriksson,Boris Lenhard,Wyeth W. Wasserman,Jacob Odeberg
#t2008
#cPLoS Computational Biology
#index3372788
#% 
#!
  
#*Molecular Dynamics Simulations Suggest that Electrostatic Funnel Directs Binding of Tamiflu to Influenza N1 Neuraminidases.
#@Ly Le,Eric H. Lee,David J. Hardy,Thanh N. Truong,Klaus Schulten
#t2010
#cPLoS Computational Biology
#index3372477
#% 
#!
  
#*Frequent Gain and Loss of Functional Transcription Factor Binding Sites.
#@Scott Doniger,Justin C. Fay
#t2007
#cPLoS Computational Biology
#index3372085
#% 
#!
  
#*Thermodynamic Stability of Histone H3 Is a Necessary but not Sufficient Driving Force for its Evolutionary Conservation.
#@Srinivas Ramachandran,Lisa Vogel,Brian D. Strahl,Nikolay V. Dokholyan
#t2011
#cPLoS Computational Biology
#index3372805
#% 
#!
  
#*Joint Ancestry and Association Testing in Admixed Individuals.
#@Daniel Shriner,Adebowale Adeyemo,Charles Rotimi
#t2011
#cPLoS Computational Biology
#index3372813
#% 
#!
  
#*Brownian Dynamics Simulation of Nucleocytoplasmic Transport: A Coarse-Grained Model for the Functional State of the Nuclear Pore Complex.
#@Ruhollah Moussavi-Baygi,Yousef Jamali,Reza Karimi,Mohammad R. Kaazempur Mofrad
#t2011
#cPLoS Computational Biology
#index3371907
#% 
#!
  
#*Design Principles for Riboswitch Function.
#@Chase L. Beisel,Christina D. Smolke
#t2009
#cPLoS Computational Biology
#index3372140
#% 
#!
  
#*Discovery of Regulatory Elements is Improved by a Discriminatory Approach.
#@Eivind Valen,Albin Sandelin,Ole Winther,Anders Krogh
#t2009
#cPLoS Computational Biology
#index3372853
#% 
#!
  
#*Gene Expression Noise in Spatial Patterning: Promoter Structure Affects Noise Amplitude and Distribution in Segmentation.
#@David M. Holloway,Francisco J. P. Lopes,Luciano da Fontoura Costa,Bruno Augusto Nassif Travençolo,Nina Golyandina,Konstantin Usevich,Alexander V. Spirov
#t2011
#cPLoS Computational Biology
#index3372872
#% 
#!
  
#*Probability Matching as a Computational Strategy Used in Perception.
#@David R. Wozny,Ulrik R. Beierholm,Ladan Shams
#t2010
#cPLoS Computational Biology
#index3372938
#% 
#!
  
#*Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals.
#@Yair Field,Noam Kaplan,Yvonne Fondufe-Mittendorf,Irene K. Moore,Eilon Sharon,Yaniv Lubling,Jonathan Widom,Eran Segal
#t2008
#cPLoS Computational Biology
#index3373142
#% 
#!
  
#*Selective Adaptation in Networks of Heterogeneous Populations: Model, Simulation, and Experiment.
#@Avner Wallach,Danny Eytan,Shimon Marom,Ron Meir
#t2008
#cPLoS Computational Biology
#index3373050
#% 
#!
  
#*Effective Reduced Diffusion-Models: A Data Driven Approach to the Analysis of Neuronal Dynamics.
#@Gustavo Deco,Daniel Martí,Anders Ledberg,Ramon Reig,Maria V. Sanchez-Vives
#t2009
#cPLoS Computational Biology
#index3373107
#% 
#!
  
#*The Development of Computational Biology in Pakistan: Still a Long Way to Go.
#@Muhammad Ilyas,Samrene Sadique,Kahlid Masood,Raheel Qamar,Shahid Nadeem Chohan
#t2011
#cPLoS Computational Biology
#index3373147
#% 
#!
  
#*Towards Prediction of Metabolic Products of Polyketide Synthases: An Analysis.
#@Gitanjali Yadav,Rajesh S. Gokhale,Debasisa Mohanty
#t2009
#cPLoS Computational Biology
#index3373308
#% 
#!
  
#*A Feedback Quenched Oscillator Produces Turing Patterning with One Diffuser.
#@Justin Hsia,William J. Holtz,Daniel C. Huang,Murat Arcak,Michel M. Maharbiz
#t2012
#cPLoS Computational Biology
#index3373100
#% 
#!
  
#*Correction: Persistent Activity in Neural Networks with Dynamic Synapses.
#@Omri Barak,Misha Tsodyks
#t2007
#cPLoS Computational Biology
#index3372900
#% 
#!
  
#*Estimation of Thalamocortical and Intracortical Network Models from Joint Thalamic Single-Electrode and Cortical Laminar-Electrode Recordings in the Rat Barrel System.
#@Patrick Blomquist,Anna Devor,Ulf G. Indahl,Istvan Ulbert,Gaute T. Einevoll,Anders M. Dale
#t2009
#cPLoS Computational Biology
#index3373067
#% 
#!
  
#*Correction: The Genome: An Outsider's View.
#@Carl Zimmer
#t2007
#cPLoS Computational Biology
#index3372945
#% 
#!
  
#*Automatic Morphological Subtyping Reveals New Roles of Caspases in Mitochondrial Dynamics.
#@Jyh-Ying Peng,Chung-Chih Lin,Yen-Jen Chen,Lung-Sen Kao,Young-Chau Liu,Chung-Chien Chou,Yi-Hung Huang,Fang-Rong Chang,Yang-Chang Wu,Yuh-Show Tsai,Chun-Nan Hsu
#t2011
#cPLoS Computational Biology
#index3372890
#% 
#!
  
#*More Than 1, 001 Problems with Protein Domain Databases: Transmembrane Regions, Signal Peptides and the Issue of Sequence Homology.
#@Wing-Cheong Wong,Sebastian Maurer-Stroh,Frank Eisenhaber
#t2010
#cPLoS Computational Biology
#index3373118
#% 
#!
  
#*Differential Affinity and Catalytic Activity of CheZ in Chemotaxis.
#@Siebe B. van Albada,Pieter Rein ten Wolde
#t2009
#cPLoS Computational Biology
#index3373344
#% 
#!
  
#*Deciphering the Arginine-Binding Preferences at the Substrate-Binding Groove of Ser/Thr Kinases by Computational Surface Mapping.
#@Avraham Ben-Shimon,Masha Y. Niv
#t2011
#cPLoS Computational Biology
#index3372909
#% 
#!
  
#*Automated Discovery of Functional Generality of Human Gene Expression Programs.
#@Georg K. Gerber,Robin D. Dowell,Tommi Jaakkola,David K. Gifford
#t2007
#cPLoS Computational Biology
#index3373125
#% 
#!
  
#*Modeling Conformational Ensembles of Slow Functional Motions in Pin1-WW.
#@Faruck Morcos,Santanu Chatterjee,Christopher L. McClendon,Paul Brenner,Roberto López-Rendón,John Zintsmaster,Mária Ercsey-Ravasz,Christopher R. Sweet,Matthew P. Jacobson,Jeffrey W. Peng,Jesús A. Izaguirre
#t2010
#cPLoS Computational Biology
#index3373041
#% 
#!
  
#*A Cervid Vocal Fold Model Suggests Greater Glottal Efficiency in Calling at High Frequencies.
#@Ingo Titze,Tobias Riede
#t2010
#cPLoS Computational Biology
#index3373288
#% 
#!
  
#*Conformational Transitions upon Ligand Binding: Holo-Structure Prediction from Apo Conformations.
#@Daniel Seeliger,Bert L. de Groot
#t2010
#cPLoS Computational Biology
#index3372996
#% 
#!
  
#*Heterogeneous Host Susceptibility Enhances Prevalence of Mixed-Genotype Micro-Parasite Infections.
#@Wopke van der Werf,Lia Hemerik,Just M. Vlak,Mark P. Zwart
#t2011
#cPLoS Computational Biology
#index3373188
#% 
#!
  
#*Explaining Observed Infection and Antibody Age-Profiles in Populations with Urogenital Schistosomiasis.
#@Kate M. Mitchell,Francisca Mutapi,Nicholas J. Savill,Mark E. J. Woolhouse
#t2011
#cPLoS Computational Biology
#index3373154
#% 
#!
  
#*Hypergraphs and Cellular Networks.
#@Steffen Klamt,Utz-Uwe Haus,Fabian J. Theis
#t2009
#cPLoS Computational Biology
#index3373160
#% 
#!
  
#*Drug Discovery Using Chemical Systems Biology: Repositioning the Safe Medicine Comtan to Treat Multi-Drug and Extensively Drug Resistant Tuberculosis.
#@Sarah L. Kinnings,Nina Liu,Nancy Buchmeier,Peter J. Tonge,Lei Xie,Philip E. Bourne
#t2009
#cPLoS Computational Biology
#index3372993
#% 
#!
  
#*Ligand Binding and Circular Permutation Modify Residue Interaction Network in DHFR.
#@Zengjian Hu,Donnell Bowen,William M. Southerland,Antonio del Sol,Yongping Pan,Ruth Nussinov,Buyong Ma
#t2007
#cPLoS Computational Biology
#index3372919
#% 
#!
  
#*Serotonin, Inhibition, and Negative Mood.
#@Peter Dayan,Quentin J. M. Huys
#t2008
#cPLoS Computational Biology
#index3372986
#% 
#!
  
#*Protein Networks as Logic Functions in Development and Cancer.
#@Janusz Dutkowski,Trey Ideker
#t2011
#cPLoS Computational Biology
#index3373143
#% 
#!
  
#*Disordered Flanks Prevent Peptide Aggregation.
#@Sanne Abeln,Daan Frenkel
#t2008
#cPLoS Computational Biology
#index3372968
#% 
#!
  
#*Computational Aspects of Feedback in Neural Circuits.
#@Wolfgang Maass,Prashant Joshi,Eduardo D. Sontag
#t2007
#cPLoS Computational Biology
#index3372897
#% 
#!
  
#*A Common Model for Cytokine Receptor Activation: Combined Scissor-Like Rotation and Self-Rotation of Receptor Dimer Induced by Class I Cytokine.
#@Xiaodong Pang,Huan-Xiang Zhou
#t2012
#cPLoS Computational Biology
#index3373004
#% 
#!
  
#*Somitogenesis Clock-Wave Initiation Requires Differential Decay and Multiple Binding Sites for Clock Protein.
#@Mark Campanelli,Tomás Gedeon
#t2010
#cPLoS Computational Biology
#index3372948
#% 
#!
  
#*How Thioredoxin Dissociates Its Mixed Disulfide.
#@Goedele Roos,Nicolas Foloppe,Koen Van Laer,Lode Wyns,Lennart Nilsson,Paul Geerlings,Joris Messens
#t2009
#cPLoS Computational Biology
#index3372930
#% 
#!
  
#*Conference Postcards from PSB 2010.
#@Ruchira S. Datta,Matthew W. Lux,Philip E. Bourne
#t2010
#cPLoS Computational Biology
#index3373203
#% 
#!
  
#*Evolution and Optimality of Similar Neural Mechanisms for Perception and Action during Search.
#@Sheng Zhang,Miguel P. Eckstein
#t2010
#cPLoS Computational Biology
#index3373231
#% 
#!
  
#*Host Control of Malaria Infections: Constraints on Immune and Erythropoeitic Response Kinetics.
#@Philip G. McQueen,F. Ellis McKenzie
#t2008
#cPLoS Computational Biology
#index3373011
#% 
#!
  
#*Genome Landscapes and Bacteriophage Codon Usage.
#@Julius B. Lucks,David R. Nelson,Grzegorz R. Kudla,Joshua B. Plotkin
#t2008
#cPLoS Computational Biology
#index3373078
#% 
#!
  
#*A Statistical Model to Identify Differentially Expressed Proteins in 2D PAGE Gels.
#@Steven H. Wu,Michael A. Black,Robyn A. North,Kelly R. Atkinson,Allen G. Rodrigo
#t2009
#cPLoS Computational Biology
#index3373097
#% 
#!
  
#*Digital Signal Processing Reveals Circadian Baseline Oscillation in Majority of Mammalian Genes.
#@Andrey A. Ptitsyn,Sanjin Zvonic,Jeffrey M. Gimble
#t2007
#cPLoS Computational Biology
#index3373270
#% 
#!
  
#*Nonidentifiability of the Source of Intrinsic Noise in Gene Expression from Single-Burst Data.
#@Piers J. Ingram,Michael P. H. Stumpf,Jaroslav Stark
#t2008
#cPLoS Computational Biology
#index3373001
#% 
#!
  
#*Dynamically-Driven Inactivation of the Catalytic Machinery of the SARS 3C-Like Protease by the N214A Mutation on the Extra Domain.
#@Jiahai Shi,Nanyu Han,Liangzhong Lim,Shixiong Lua,J. Sivaraman,Lushan Wang,Yuguang Mu,Jianxing Song
#t2011
#cPLoS Computational Biology
#index3373277
#% 
#!
  
#*The Evolutionary Analysis of Emerging Low Frequency HIV-1 CXCR4 Using Variants through Time - An Ultra-Deep Approach.
#@John Archer,Andrew Rambaut,Bruce E. Taillon,P. Richard Harrigan,Marilyn Lewis,David L. Robertson
#t2010
#cPLoS Computational Biology
#index3372912
#% 
#!
  
#*Stochastic Differential Equation Model for Cerebellar Granule Cell Excitability.
#@Antti Saarinen,Marja-Leena Linne,Olli Yli-Harja
#t2008
#cPLoS Computational Biology
#index3373166
#% 
#!
  
#*Towards a Mathematical Theory of Cortical Micro-circuits.
#@Dileep George,Jeff Hawkins
#t2009
#cPLoS Computational Biology
#index3373042
#% 
#!
  
#*Tumor Growth Rate Determines the Timing of Optimal Chronomodulated Treatment Schedules.
#@Samuel Bernard,Branka Cajavec Bernard,Francis Lévi,Hanspeter Herzel
#t2010
#cPLoS Computational Biology
#index3373233
#% 
#!
  
#*Modeling Mitochondrial Bioenergetics with Integrated Volume Dynamics.
#@Jason N. Bazil,Gregery T. Buzzard,Ann E. Rundell
#t2010
#cPLoS Computational Biology
#index3373136
#% 
#!
  
#*System-Level Insights into Yeast Metabolism by Thermodynamic Analysis of Elementary Flux Modes.
#@Stefan J. Jol,Anne Kümmel,Marco Terzer,Jörg Stelling,Matthias Heinemann
#t2012
#cPLoS Computational Biology
#index3373351
#% 
#!
  
#*The Roots of Bioinformatics.
#@David B. Searls
#t2010
#cPLoS Computational Biology
#index3372856
#% 
#!
  
#*Tradeoff Between Stability and Multispecificity in the Design of Promiscuous Proteins.
#@Menachem Fromer,Julia M. Shifman
#t2009
#cPLoS Computational Biology
#index3373221
#% 
#!
  
#*Calculating Evolutionary Dynamics in Structured Populations.
#@Charles G. Nathanson,Corina E. Tarnita,Martin A. Nowak
#t2009
#cPLoS Computational Biology
#index3373298
#% 
#!
  
#*Asymmetric Switching in a Homodimeric ABC Transporter: A Simulation Study.
#@Jussi Aittoniemi,Heidi de Wet,Frances M. Ashcroft,Mark S. P. Sansom
#t2010
#cPLoS Computational Biology
#index3373241
#% 
#!
  
#*Evolution of the Multi-Domain Structures of Virulence Genes in the Human Malaria Parasite, .
#@Caroline O. Buckee,Mario Recker
#t2012
#cPLoS Computational Biology
#index3372966
#% 
#!
  
#*Analysis of Sequence Conservation at Nucleotide Resolution.
#@Saurabh Asthana,Mikhail A. Roytberg,John A. Stamatoyannopoulos,Shamil R. Sunyaev
#t2007
#cPLoS Computational Biology
#index3373315
#% 
#!
  
#*Integrating Bioinformatics Tools to Handle Glycosylation.
#@Yuliet Mazola,Glay Chinea,Alexis Musacchio
#t2011
#cPLoS Computational Biology
#index3373167
#% 
#!
  
#*Evaluation of Objective Uncertainty in the Visual System.
#@Simon Barthelmé,Pascal Mamassian
#t2009
#cPLoS Computational Biology
#index3373361
#% 
#!
  
#*Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC).
#@James A. Eddy,Leroy Hood,Nathan D. Price,Donald Geman
#t2010
#cPLoS Computational Biology
#index3373216
#% 
#!
  
#*Acute Effects of Sex Steroid Hormones on Susceptibility to Cardiac Arrhythmias: A Simulation Study.
#@Pei-Chi Yang,Junko Kurokawa,Tetsushi Furukawa,Colleen E. Clancy
#t2010
#cPLoS Computational Biology
#index3373141
#% 
#!
  
#*Modeling Planarian Regeneration: A Primer for Reverse-Engineering the Worm.
#@Daniel Lobo,Wendy S. Beane,Michael Levin
#t2012
#cPLoS Computational Biology
#index3372863
#% 
#!
  
#*A Computational Approach to the Functional Screening of Genomes.
#@Davide Chiarugi,Pierpaolo Degano,Roberto Marangoni
#t2007
#cPLoS Computational Biology
#index3373193
#% 
#!
  
#*The Evolution of Two-Component Systems in Bacteria Reveals Different Strategies for Niche Adaptation.
#@Eric J. Alm,Katherine H. Huang,Adam P. Arkin
#t2006
#cPLoS Computational Biology
#index3373196
#% 
#!
  
#*Estimating the Relevance of World Disturbances to Explain Savings, Interference and Long-Term Motor Adaptation Effects.
#@Max Berniker,Konrad P. Kording
#t2011
#cPLoS Computational Biology
#index3373030
#% 
#!
  
#*Regression Analysis for Constraining Free Parameters in Electrophysiological Models of Cardiac Cells.
#@Amrita X. Sarkar,Eric A. Sobie
#t2010
#cPLoS Computational Biology
#index3373178
#% 
#!
  
#*Barriers to Diffusion in Dendrites and Estimation of Calcium Spread Following Synaptic Inputs.
#@Armin Biess,Eduard Korkotian,David Holcman
#t2011
#cPLoS Computational Biology
#index3373133
#% 
#!
  
#*Beauty Is in the Eye of the Beholder: Proteins Can Recognize Binding Sites of Homologous Proteins in More than One Way.
#@Juliette Martin
#t2010
#cPLoS Computational Biology
#index3373185
#% 
#!
  
#*Identification of the Proliferation/Differentiation Switch in the Cellular Network of Multicellular Organisms.
#@Kai Xia,Huiling Xue,Dong Dong,Shanshan Zhu,Jiamu Wang,Qingpeng Zhang,Lei Hou,Hua Chen,Ran Tao,Zheng Huang,Zheng Fu,Ye-Guang Chen,Jing-Dong J. Han
#t2006
#cPLoS Computational Biology
#index3372956
#% 
#!
  
#*Bistability of Mitochondrial Respiration Underlies Paradoxical Reactive Oxygen Species Generation Induced by Anoxia.
#@Vitaly A. Selivanov,Tatyana V. Votyakova,Jennifer Zeak,Massimo Trucco,Josep Roca,Marta Cascante
#t2009
#cPLoS Computational Biology
#index3373228
#% 
#!
  
#*Network-Based Prediction and Analysis of HIV Dependency Factors.
#@T. M. Murali,Matthew D. Dyer,David Badger,Brett M. Tyler,Michael G. Katze
#t2011
#cPLoS Computational Biology
#index3373207
#% 
#!
  
#*A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes.
#@Wanjun Gu,Tong Zhou,Claus O. Wilke
#t2010
#cPLoS Computational Biology
#index3373202
#% 
#!
  
#*UV-Induced Mutagenesis in SOS Response: A Quantitative Model.
#@Sandeep Krishna,Sergei Maslov,Kim Sneppen
#t2007
#cPLoS Computational Biology
#index3373171
#% 
#!
  
#*The Human Connectome: A Structural Description of the Human Brain.
#@Olaf Sporns,Giulio Tononi,Rolf Kötter
#t2005
#cPLoS Computational Biology
#index3373323
#% 
#!
  
#*Impact of Dendritic Size and Dendritic Topology on Burst Firing in Pyramidal Cells.
#@Ronald A. J. van Elburg,Arjen van Ooyen
#t2010
#cPLoS Computational Biology
#index3373098
#% 
#!
  
#*CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing.
#@Pradipta Ray,Suyash Shringarpure,Mladen Kolar,Eric P. Xing
#t2008
#cPLoS Computational Biology
#index3373126
#% 
#!
  
#*Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis.
#@Matthew A. Oberhardt,Jacek Puchalka,Vítor A. P. Martins dos Santos,Jason A. Papin
#t2011
#cPLoS Computational Biology
#index3373325
#% 
#!
  
#*Simulated Epidemics in an Empirical Spatiotemporal Network of 50, 185 Sexual Contacts.
#@Luis E. C. Rocha,Fredrik Liljeros,Petter Holme
#t2011
#cPLoS Computational Biology
#index3373264
#% 
#!
  
#*Stochastic Ion Channel Gating in Dendritic Neurons: Morphology Dependence and Probabilistic Synaptic Activation of Dendritic Spikes.
#@Robert C. Cannon,Cian O'Donnell,Matthew F. Nolan
#t2010
#cPLoS Computational Biology
#index3373052
#% 
#!
  
#*Transcriptional Regulation: Effects of Promoter Proximal Pausing on Speed, Synchrony and Reliability.
#@Alistair N. Boettiger,Peter L. Ralph,Steven N. Evans
#t2011
#cPLoS Computational Biology
#index3372854
#% 
#!
  
#*SimulFold: Simultaneously Inferring RNA Structures Including Pseudoknots, Alignments, and Trees Using a Bayesian MCMC Framework.
#@Irmtraud M. Meyer,István Miklós
#t2007
#cPLoS Computational Biology
#index3372887
#% 
#!
  
#*On Conduction in a Bacterial Sodium Channel.
#@Simone Furini,Carmen Domene
#t2012
#cPLoS Computational Biology
#index3373339
#% 
#!
  
#*Risk-Sensitive Optimal Feedback Control Accounts for Sensorimotor Behavior under Uncertainty.
#@Arne J. Nagengast,Daniel A. Braun,Daniel M. Wolpert
#t2010
#cPLoS Computational Biology
#index3373283
#% 
#!
  
#*Multi-scale Inference of Interaction Rules in Animal Groups Using Bayesian Model Selection.
#@Richard P. Mann,Andrea Perna,Daniel Strömbom,Roman Garnett,James E. Herbert-Read,David J. T. Sumpter,Ashley J. W. Ward
#t2012
#cPLoS Computational Biology
#index3372864
#% 
#!
  
#*Modeling Systems-Level Regulation of Host Immune Responses.
#@Juilee Thakar,Mylisa Pilione,Girish Kirimanjeswara,Eric T. Harvill,Réka Albert
#t2007
#cPLoS Computational Biology
#index3373348
#% 
#!
  
#*Representation of Time-Varying Stimuli by a Network Exhibiting Oscillations on a Faster Time Scale.
#@Maoz Shamir,Oded Ghitza,Steven Epstein,Nancy Kopell
#t2009
#cPLoS Computational Biology
#index3373012
#% 
#!
  
#*Traditional Biomolecular Structure Determination by NMR Spectroscopy Allows for Major Errors.
#@Sander B. Nabuurs,Chris A. E. M. Spronk,Geerten W. Vuister,Gert Vriend
#t2006
#cPLoS Computational Biology
#index3372978
#% 
#!
  
#*Toward a Census of Bacteria in Soil.
#@Patrick D. Schloss,Jo Handelsman
#t2006
#cPLoS Computational Biology
#index3372947
#% 
#!
  
#*Correction: Adaptive, Fast Walking in a Biped Robot under Neuronal Control and Learning.
#@Poramate Manoonpong,Tao Geng,Tomas Kulvicius,Bernd Porr,Florentin Wörgötter
#t2007
#cPLoS Computational Biology
#index3373269
#% 
#!
  
#*Training Signaling Pathway Maps to Biochemical Data with Constrained Fuzzy Logic: Quantitative Analysis of Liver Cell Responses to Inflammatory Stimuli.
#@Melody K. Morris,Julio Saez-Rodriguez,David C. Clarke,Peter K. Sorger,Douglas A. Lauffenburger
#t2011
#cPLoS Computational Biology
#index3373070
#% 
#!
  
#*Use of Data-Biased Random Walks on Graphs for the Retrieval of Context-Specific Networks from Genomic Data.
#@Kakajan Komurov,Michael A. White,Prahlad T. Ram
#t2010
#cPLoS Computational Biology
#index3372988
#% 
#!
  
#*Multi-Scaled Explorations of Binding-Induced Folding of Intrinsically Disordered Protein Inhibitor IA3 to its Target Enzyme.
#@Jin Wang,Yong Wang,Xiakun Chu,Stephen J. Hagen,Wei Han,Erkang Wang
#t2011
#cPLoS Computational Biology
#index3373255
#% 
#!
  
#*Immunoinformatics Comes of Age.
#@Bette T. Korber,Montiago LaBute,Karina Yusim
#t2006
#cPLoS Computational Biology
#index3373088
#% 
#!
  
#*Learning "graph-mer" Motifs that Predict Gene Expression Trajectories in Development.
#@Xuejing Li,Casandra Panea,Chris H. Wiggins,Valerie Reinke,Christina S. Leslie
#t2010
#cPLoS Computational Biology
#index3373059
#% 
#!
  
#*Differences in Cell Division Rates Drive the Evolution of Terminal Differentiation in Microbes.
#@João F. Matias Rodrigues,Daniel J. Rankin,Valentina Rossetti,Andreas Wagner,Homayoun C. Bagheri
#t2012
#cPLoS Computational Biology
#index3373320
#% 
#!
  
#*Statistical Use of Argonaute Expression and RISC Assembly in microRNA Target Identification.
#@Stephen A. Stanhope,Srikumar Sengupta,Johan den Boon,Paul Ahlquist,Michael A. Newton
#t2009
#cPLoS Computational Biology
#index3372946
#% 
#!
  
#*A Dynamic View of Domain-Motif Interactions.
#@Eyal Akiva,Gilgi Friedlander,Zohar Itzhaki,Hanah Margalit
#t2012
#cPLoS Computational Biology
#index3372882
#% 
#!
  
#*Emergence of Spatial Structure in Cell Groups and the Evolution of Cooperation.
#@Carey D. Nadell,Kevin R. Foster,João B. Xavier
#t2010
#cPLoS Computational Biology
#index3373108
#% 
#!
  
#*Preferentially Quantized Linker DNA Lengths in .
#@Ji-Ping Wang,Yvonne Fondufe-Mittendorf,Liqun Xi,Guei-Feng Tsai,Eran Segal,Jonathan Widom
#t2008
#cPLoS Computational Biology
#index3373049
#% 
#!
  
#*A Multi-cell, Multi-scale Model of Vertebrate Segmentation and Somite Formation.
#@Susan D. Hester,Julio M. Belmonte,J. Scott Gens,Sherry G. Clendenon,James A. Glazier
#t2011
#cPLoS Computational Biology
#index3373354
#% 
#!
  
#*A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval.
#@Naomi Habib,Tommy Kaplan,Hanah Margalit,Nir Friedman
#t2008
#cPLoS Computational Biology
#index3373002
#% 
#!
  
#*Mapping Information Flow in Sensorimotor Networks.
#@Max Lungarella,Olaf Sporns
#t2006
#cPLoS Computational Biology
#index3372937
#% 
#!
  
#*Model Cortical Association Fields Account for the Time Course and Dependence on Target Complexity of Human Contour Perception.
#@Vadas Gintautas,Michael I. Ham,Benjamin Kunsberg,Shawn Barr,Steven P. Brumby,Craig Rasmussen,John S. George,Ilya Nemenman,Luís M. A. Bettencourt,Garrett T. Kenyon
#t2011
#cPLoS Computational Biology
#index3373247
#% 
#!
  
#*Minimum Criteria for DNA Damage-Induced Phase Advances in Circadian Rhythms.
#@Christian I. Hong,Judit Zámborszky,Attila Csikasz-Nagy
#t2009
#cPLoS Computational Biology
#index3372910
#% 
#!
  
#*Sampling the Solution Space in Genome-Scale Metabolic Networks Reveals Transcriptional Regulation in Key Enzymes.
#@Sergio Bordel,Rasmus Agren,Jens Nielsen
#t2010
#cPLoS Computational Biology
#index3373278
#% 
#!
  
#*The Impact of Contact Tracing in Clustered Populations.
#@Thomas House,Matt J. Keeling
#t2010
#cPLoS Computational Biology
#index3373031
#% 
#!
  
#*Prediction of Human Disease Genes by Human-Mouse Conserved Coexpression Analysis.
#@Ugo Ala,Rosario Michael Piro,Elena Grassi,Christian Damasco,Lorenzo Silengo,Martin Oti,Paolo Provero,Ferdinando Di Cunto
#t2008
#cPLoS Computational Biology
#index3373334
#% 
#!
  
#*A Neural Computational Model of Incentive Salience.
#@Jun Zhang,Kent C. Berridge,Amy J. Tindell,Kyle S. Smith,J. Wayne Aldridge
#t2009
#cPLoS Computational Biology
#index3372892
#% 
#!
  
#*Accessing a Hidden Conformation of the Maltose Binding Protein Using Accelerated Molecular Dynamics.
#@Denis Bucher,Barry J. Grant,Phineus R. Markwick,James Andrew McCammon
#t2011
#cPLoS Computational Biology
#index3372855
#% 
#!
  
#*Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins.
#@Nan Song,Jacob M. Joseph,George B. Davis,Dannie Durand
#t2008
#cPLoS Computational Biology
#index3373085
#% 
#!
  
#*Phylogenetic Reconstruction of Orthology, Paralogy, and Conserved Synteny for Dog and Human.
#@Leo Goodstadt,Chris P. Ponting
#t2006
#cPLoS Computational Biology
#index3373177
#% 
#!
  
#*Spatial Learning and Action Planning in a Prefrontal Cortical Network Model.
#@Louis-Emmanuel Martinet,Denis Sheynikhovich,Karim Benchenane,Angelo Arleo
#t2011
#cPLoS Computational Biology
#index3373186
#% 
#!
  
#*Dose Response Relationship in Anti-Stress Gene Regulatory Networks.
#@Qiang Zhang,Melvin E. Andersen
#t2007
#cPLoS Computational Biology
#index3372881
#% 
#!
  
#*Entropic Tension in Crowded Membranes.
#@Martin Lindén,Pierre Sens,Rob Phillips
#t2012
#cPLoS Computational Biology
#index3372987
#% 
#!
  
#*How To Record a Million Synaptic Weights in a Hippocampal Slice.
#@Upinder S. Bhalla
#t2008
#cPLoS Computational Biology
#index3373236
#% 
#!
  
#*Stochastic Model of Integrin-Mediated Signaling and Adhesion Dynamics at the Leading Edges of Migrating Cells.
#@Murat Cirit,Matej Krajcovic,Colin K. Choi,Erik S. Welf,Alan F. Horwitz,Jason M. Haugh
#t2010
#cPLoS Computational Biology
#index3372920
#% 
#!
  
#*Integrin Clustering Is Driven by Mechanical Resistance from the Glycocalyx and the Substrate.
#@Matthew J. Paszek,David Boettiger,Valerie M. Weaver,Daniel A. Hammer
#t2009
#cPLoS Computational Biology
#index3372877
#% 
#!
  
#*Experimentation of Glioma Microenvironment Development and Anti-tumor Therapy.
#@Yu Wu,Yao Lu,Weiqiang Chen,Jianping Fu,Rong Fan
#t2012
#cPLoS Computational Biology
#index3373225
#% 
#!
  
#*Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks.
#@Sheila M. Reynolds,Lukas Käll,Michael Riffle,Jeff A. Bilmes,William Stafford Noble
#t2008
#cPLoS Computational Biology
#index3373153
#% 
#!
  
#*Decoding Unattended Fearful Faces with Whole-Brain Correlations: An Approach to Identify Condition-Dependent Large-Scale Functional Connectivity.
#@Spiro P. Pantazatos,Ardesheer Talati,Paul Pavlidis,Joy Hirsch
#t2012
#cPLoS Computational Biology
#index3373099
#% 
#!
  
#*Robust Network Topologies for Generating Switch-Like Cellular Responses.
#@Najaf A. Shah,Casim A. Sarkar
#t2011
#cPLoS Computational Biology
#index3373368
#% 
#!
  
#*Non-Additive Coupling Enables Propagation of Synchronous Spiking Activity in Purely Random Networks.
#@Raoul-Martin Memmesheimer,Marc Timme
#t2012
#cPLoS Computational Biology
#index3373134
#% 
#!
  
#*Cell Groups Reveal Structure of Stimulus Space.
#@Carina Curto,Vladimir Itskov
#t2008
#cPLoS Computational Biology
#index3373222
#% 
#!
  
#*Consensus-Phenotype Integration of Transcriptomic and Metabolomic Data Implies a Role for Metabolism in the Chemosensitivity of Tumour Cells.
#@Rachel Cavill,Atanas Kamburov,James K. Ellis,Toby J. Athersuch,Marcus S. C. Blagrove,Ralf Herwig,Timothy M. D. Ebbels,Hector C. Keun
#t2011
#cPLoS Computational Biology
#index3373062
#% 
#!
  
#*Recognition of Unknown Conserved Alternatively Spliced Exons.
#@Uwe Ohler,Noam Shomron,Christopher B. Burge
#t2005
#cPLoS Computational Biology
#index3373208
#% 
#!
  
#*An Integrative Genomic Approach to Uncover Molecular Mechanisms of Prokaryotic Traits.
#@Yang Liu,Jianrong Li,Lee T. Sam,Chern-Sing Goh,Mark Gerstein,Yves A. Lussier
#t2006
#cPLoS Computational Biology
#index3373144
#% 
#!
  
#*Accurate Structural Correlations from Maximum Likelihood Superpositions.
#@Douglas L. Theobald,Deborah S. Wuttke
#t2008
#cPLoS Computational Biology
#index3373093
#% 
#!
  
#*Computational Biology in Colombia.
#@Silvia Restrepo,Andrés Pinzón,Luis Miguel Rodriguez-Rojas,Roberto Sierra,Alejandro Grajales,Adriana Bernal,Emiliano Barreto,Pedro Moreno,Maria Mercedes Zambrano,Marco Cristancho,Andrés González,Harold Castro
#t2009
#cPLoS Computational Biology
#index3372884
#% 
#!
  
#*A Theory of Rate Coding Control by Intrinsic Plasticity Effects.
#@J. Naudé,J. T. Paz,Hugues Berry,Bruno Delord
#t2012
#cPLoS Computational Biology
#index3373242
#% 
#!
  
#*Predictive Feedback Can Account for Biphasic Responses in the Lateral Geniculate Nucleus.
#@Janneke F. M. Jehee,Dana H. Ballard
#t2009
#cPLoS Computational Biology
#index3373290
#% 
#!
  
#*Combinations of Protein-Chemical Complex Structures Reveal New Targets for Established Drugs.
#@Olga V. Kalinina,Oliver Wichmann,Gordana Apic,Robert B. Russell
#t2011
#cPLoS Computational Biology
#index3373286
#% 
#!
  
#*Recent Evolutions of Multiple Sequence Alignment Algorithms.
#@Cédric Notredame
#t2007
#cPLoS Computational Biology
#index3373359
#% 
#!
  
#*Energy-Information Trade-Offs between Movement and Sensing.
#@Malcolm A. MacIver,Neelesh A. Patankar,Anup A. Shirgaonkar
#t2010
#cPLoS Computational Biology
#index3373194
#% 
#!
  
#*Metabolic Reconstruction and Modeling of Nitrogen Fixation in .
#@Osbaldo Resendis-Antonio,Jennifer L. Reed,Sergio Encarnación,Julio Collado-Vides,Bernhard Ø. Palsson
#t2007
#cPLoS Computational Biology
#index3373306
#% 
#!
  
#*Retroviral Integration Process in the Human Genome: Is It Really Non-Random? A New Statistical Approach.
#@Alessandro Ambrosi,Claudia Cattoglio,Clelia Di Serio
#t2008
#cPLoS Computational Biology
#index3372998
#% 
#!
  
#*Modeling the Impact of Lesions in the Human Brain.
#@Jeffrey Alstott,Michael Breakspear,Patric Hagmann,Leila Cammoun,Olaf Sporns
#t2009
#cPLoS Computational Biology
#index3373116
#% 
#!
  
#*Burst-Time-Dependent Plasticity Robustly Guides ON/OFF Segregation in the Lateral Geniculate Nucleus.
#@Julijana Gjorgjieva,Taro Toyoizumi,Stephen J. Eglen
#t2009
#cPLoS Computational Biology
#index3373152
#% 
#!
  
#*Intrinsic Stability of Temporally Shifted Spike-Timing Dependent Plasticity.
#@Baktash Babadi,L. F. Abbott
#t2010
#cPLoS Computational Biology
#index3373342
#% 
#!
  
#*Conference Postcards from ISMB/ECCB 2011.
#@Pedro Madrigal,Noa Sela,Simon M. Lin
#t2011
#cPLoS Computational Biology
#index3373131
#% 
#!
  
#*Transient Resetting: A Novel Mechanism for Synchrony and Its Biological Examples.
#@Chunguang Li,Luonan Chen,Kazuyuki Aihara
#t2006
#cPLoS Computational Biology
#index3372970
#% 
#!
  
#*Spatial Regulation and the Rate of Signal Transduction Activation.
#@Nizar N. Batada,Larry A. Shepp,David O. Siegmund,Michael Levitt
#t2006
#cPLoS Computational Biology
#index3373123
#% 
#!
  
#*Optimal Timing and Duration of Induction Therapy for HIV-1 Infection.
#@Marcel E. Curlin,Shyamala Iyer,John E. Mittler
#t2007
#cPLoS Computational Biology
#index3372862
#% 
#!
  
#*Genomics and Privacy: Implications of the New Reality of Closed Data for the Field.
#@Dov Greenbaum,Andrea Sboner,Xinmeng Jasmine Mu,Mark Gerstein
#t2011
#cPLoS Computational Biology
#index3373261
#% 
#!
  
#*Nash Equilibria in Multi-Agent Motor Interactions.
#@Daniel A. Braun,Pedro A. Ortega,Daniel M. Wolpert
#t2009
#cPLoS Computational Biology
#index3373080
#% 
#!
  
#*Wiggle - Predicting Functionally Flexible Regions from Primary Sequence.
#@Jenny Gu,Michael Gribskov,Philip E. Bourne
#t2006
#cPLoS Computational Biology
#index3373328
#% 
#!
  
#*Modeling Reveals Bistability and Low-Pass Filtering in the Network Module Determining Blood Stem Cell Fate.
#@Jatin Narula,Aileen M. Smith,Berthold Göttgens,Oleg A. Igoshin
#t2010
#cPLoS Computational Biology
#index3372925
#% 
#!
  
#*Erratic Flu Vaccination Emerges from Short-Sighted Behavior in Contact Networks.
#@Daniel M. Cornforth,Timothy C. Reluga,Eunha Shim,Chris T. Bauch,Alison P. Galvani,Lauren Ancel Meyers
#t2011
#cPLoS Computational Biology
#index3373044
#% 
#!
  
#*Fusion and Fission of Genes Define a Metric between Fungal Genomes.
#@Pascal Durrens,Macha Nikolski,David James Sherman
#t2008
#cPLoS Computational Biology
#index3373065
#% 
#!
  
#*Global Motions of the Nuclear Pore Complex: Insights from Elastic Network Models.
#@Timothy R. Lezon,Andrej Sali,Ivet Bahar
#t2009
#cPLoS Computational Biology
#index3373275
#% 
#!
  
#*Bottleneck Genes and Community Structure in the Cell Cycle Network of .
#@Cécile Caretta-Cartozo,Paolo De Los Rios,Francesco Piazza,Pietro Liò
#t2007
#cPLoS Computational Biology
#index3372954
#% 
#!
  
#*Widespread Compensatory Evolution Conserves DNA-Encoded Nucleosome Organization in Yeast.
#@Ephraim Kenigsberg,Amir Bar,Eran Segal,Amos Tanay
#t2010
#cPLoS Computational Biology
#index3372961
#% 
#!
  
#*Discarding Functional Residues from the Substitution Table Improves Predictions of Active Sites within Three-Dimensional Structures.
#@Sungsam Gong,Tom L. Blundell
#t2008
#cPLoS Computational Biology
#index3373258
#% 
#!
  
#*Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis.
#@Thomas LaFramboise,Barbara A. Weir,Xiaojun Zhao,Rameen Beroukhim,Cheng Li,David Harrington,William R. Sellers,Matthew Meyerson
#t2005
#cPLoS Computational Biology
#index3373039
#% 
#!
  
#*Structural Consensus among Antibodies Defines the Antigen Binding Site.
#@Vered Kunik,Bjoern Peters,Yanay Ofran
#t2012
#cPLoS Computational Biology
#index3373180
#% 
#!
  
#*Emergent Dynamics of Thymocyte Development and Lineage Determination.
#@Sol Efroni,David Harel,Irun R. Cohen
#t2007
#cPLoS Computational Biology
#index3372918
#% 
#!
  
#*Network Analysis of Global Influenza Spread.
#@Joseph Chan,Antony Holmes,Raul Rabadan
#t2010
#cPLoS Computational Biology
#index3373318
#% 
#!
  
#*The G Protein-Coupled Receptor Subset of the Chicken Genome.
#@Malin C. Lagerström,Anders R. Hellström,David E. Gloriam,Thomas P. Larsson,Helgi B. Schiöth,Robert Fredriksson
#t2006
#cPLoS Computational Biology
#index3373235
#% 
#!
  
#*Evolution of Resistance to Targeted Anti-Cancer Therapies during Continuous and Pulsed Administration Strategies.
#@Jasmine Foo,Franziska Michor
#t2009
#cPLoS Computational Biology
#index3372895
#% 
#!
  
#*Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins.
#@Michael D. Daily,Jeffrey J. Gray
#t2009
#cPLoS Computational Biology
#index3373272
#% 
#!
  
#*Googling Food Webs: Can an Eigenvector Measure Species' Importance for Coextinctions?
#@Stefano Allesina,Mercedes Pascual
#t2009
#cPLoS Computational Biology
#index3373117
#% 
#!
  
#*A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation.
#@Daniel A. Beard
#t2005
#cPLoS Computational Biology
#index3373034
#% 
#!
  
#*Comparative Microbial Modules Resource: Generation and Visualization of Multi-species Biclusters.
#@Thadeous Kacmarczyk,Peter Waltman,Ashley Bate,Patrick Eichenberger,Richard Bonneau
#t2011
#cPLoS Computational Biology
#index3373172
#% 
#!
  
#*Autonomous Targeting of Infectious Superspreaders Using Engineered Transmissible Therapies.
#@Vincent T. Metzger,James O. Lloyd-Smith,Leor S. Weinberger
#t2011
#cPLoS Computational Biology
#index3373010
#% 
#!
  
#*Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions.
#@Ramon Aragues,Andrej Sali,Jaume Bonet,Marc A. Martí-Renom,Baldo Oliva
#t2007
#cPLoS Computational Biology
#index3372869
#% 
#!
  
#*Amyloidogenic Regions and Interaction Surfaces Overlap in Globular Proteins Related to Conformational Diseases.
#@Virginia Castillo,Salvador Ventura
#t2009
#cPLoS Computational Biology
#index3373165
#% 
#!
  
#*A Coarse-Grained Biophysical Model of and Its Application to Perturbation of the rRNA Operon Copy Number.
#@Arbel D. Tadmor,Tsvi Tlusty
#t2008
#cPLoS Computational Biology
#index3373068
#% 
#!
  
#*Organization of Physical Interactomes as Uncovered by Network Schemas.
#@Eric Banks,Elena Nabieva,Bernard Chazelle,Mona Singh
#t2008
#cPLoS Computational Biology
#index3373057
#% 
#!
  
#*Cell Shape Dynamics: From Waves to Migration.
#@Meghan K. Driscoll,Colin McCann,Rael Kopace,Tess Homan,John T. Fourkas,Carole Parent,Wolfgang Losert
#t2012
#cPLoS Computational Biology
#index3372976
#% 
#!
  
#*Coding Efficiency of Fly Motion Processing Is Set by Firing Rate, Not Firing Precision.
#@Deusdedit Lineu Spavieri Jr.,Hubert Eichner,Alexander Borst
#t2010
#cPLoS Computational Biology
#index3373201
#% 
#!
  
#*Coherent Conformational Degrees of Freedom as a Structural Basis for Allosteric Communication.
#@Simon Mitternacht,Igor N. Berezovsky
#t2011
#cPLoS Computational Biology
#index3372990
#% 
#!
  
#*Theoretical Analysis of the Stress Induced B-Z Transition in Superhelical DNA.
#@Dina Zhabinskaya,Craig J. Benham
#t2011
#cPLoS Computational Biology
#index3373024
#% 
#!
  
#*Cytoskeletal Signaling: Is Memory Encoded in Microtubule Lattices by CaMKII Phosphorylation?
#@Travis J. A. Craddock,Jack A. Tuszynski,Stuart R. Hameroff
#t2012
#cPLoS Computational Biology
#index3373145
#% 
#!
  
#*Minimum Information About a Simulation Experiment (MIASE).
#@Dagmar Waltemath,Richard Adams,Daniel A. Beard,Frank T. Bergmann,Upinder S. Bhalla,Randall Britten,Vijayalakshmi Chelliah,Mike T. Cooling,Jonathan Cooper,Edmund J. Crampin,Alan Garny,Stefan Hoops,Michael Hucka,Peter J. Hunter,Edda Klipp,Camille Laibe,Andrew K. Miller,Ion Moraru,David P. Nickerson,Poul M. F. Nielsen,Macha Nikolski,Sven Sahle,Herbert M. Sauro,Henning Schmidt,Jacky L. Snoep,Dominic Tolle,Olaf Wolkenhauer,Nicolas Le Novère
#t2011
#cPLoS Computational Biology
#index3373009
#% 
#!
  
#*Ensemble-Based Computational Approach Discriminates Functional Activity of p53 Cancer and Rescue Mutants.
#@Özlem Demir,Roberta Baronio,Faezeh Salehi,Christopher D. Wassman,Linda Hall,G. Wesley Hatfield,Richard Chamberlin,Peter Kaiser,Richard H. Lathrop,Rommie E. Amaro
#t2011
#cPLoS Computational Biology
#index3373043
#% 
#!
  
#*MetMap Enables Genome-Scale Methyltyping for Determining Methylation States in Populations.
#@Meromit Singer,Dario Boffelli,Joseph Dhahbi,Alexander Schönhuth,Gary P. Schroth,David I. K. Martin,Lior Pachter
#t2010
#cPLoS Computational Biology
#index3373230
#% 
#!
  
#*Correction: Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance.
#@Yuan-Yuan Li,Hui Yu,Zong-Ming Guo,Ting-Qing Guo,Kang Tu,Yi-Xue Li
#t2006
#cPLoS Computational Biology
#index3373164
#% 
#!
  
#*Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation.
#@Wenyuan Li,Chun-Chi Liu,Tong Zhang,Haifeng Li,Michael S. Waterman,Xianghong Jasmine Zhou
#t2011
#cPLoS Computational Biology
#index3372870
#% 
#!
  
#*War of Ontology Worlds: Mathematics, Computer Code, or Esperanto?
#@Andrey Rzhetsky,James A. Evans
#t2011
#cPLoS Computational Biology
#index3373367
#% 
#!
  
#*Specificity and Evolvability in Eukaryotic Protein Interaction Networks.
#@Pedro Beltrão,Luis Serrano
#t2007
#cPLoS Computational Biology
#index3373219
#% 
#!
  
#*Bistable, Irregular Firing and Population Oscillations in a Modular Attractor Memory Network.
#@Mikael Lundqvist,Albert Compte,Anders Lansner
#t2010
#cPLoS Computational Biology
#index3372904
#% 
#!
  
#*Computational Resources in Infectious Disease: Limitations and Challenges.
#@Eva C. Berglund,Björn Nystedt,Siv G. E. Andersson
#t2009
#cPLoS Computational Biology
#index3373054
#% 
#!
  
#*Spontaneous Reaction Silencing in Metabolic Optimization.
#@Takashi Nishikawa,Natali Gulbahce,Adilson E. Motter
#t2008
#cPLoS Computational Biology
#index3372973
#% 
#!
  
#*Simulating the Mammalian Blastocyst - Molecular and Mechanical Interactions Pattern the Embryo.
#@Pawel Krupinski,Vijay Chickarmane,Carsten Peterson
#t2011
#cPLoS Computational Biology
#index3373003
#% 
#!
  
#*Ten Simple Rules for Aspiring Scientists in a Low-Income Country.
#@Edgardo Moreno,José María Gutiérrez
#t2008
#cPLoS Computational Biology
#index3373289
#% 
#!
  
#*Getting Started in Gene Expression Microarray Analysis.
#@Donna K. Slonim,Itai Yanai
#t2009
#cPLoS Computational Biology
#index3373095
#% 
#!
  
#*Getting Started in Tiling Microarray Analysis.
#@X. Shirley Liu
#t2007
#cPLoS Computational Biology
#index3372967
#% 
#!
  
#*Modeling and Dynamics of the Inward-Facing State of a Na/Cl Dependent Neurotransmitter Transporter Homologue.
#@Saher Afshan Shaikh,Emad Tajkhorshid
#t2010
#cPLoS Computational Biology
#index3373317
#% 
#!
  
#*Chromophore Protonation State Controls Photoswitching of the Fluoroprotein asFP595.
#@Lars V. Schäfer,Gerrit Groenhof,Martial Boggio-Pasqua,Michael A. Robb,Helmut Grubmüller
#t2008
#cPLoS Computational Biology
#index3373350
#% 
#!
  
#*Buffering Mechanisms in Aging: A Systems Approach Toward Uncovering the Genetic Component of Aging.
#@Aviv Bergman,Gil Atzmon,Kenny Ye,Thomas MacCarthy,Nir Barzilai
#t2007
#cPLoS Computational Biology
#index3372939
#% 
#!
  
#*Computational Modeling and Analysis of Insulin Induced Eukaryotic Translation Initiation.
#@Joshua Lequieu,Anirikh Chakrabarti,Satyaprakash Nayak,Jeffrey D. Varner
#t2011
#cPLoS Computational Biology
#index3373303
#% 
#!
  
#*Quantifying the Impact of Human Immunodeficiency Virus-1 Escape From Cytotoxic T-Lymphocytes.
#@Ulrich D. Kadolsky,Becca Asquith
#t2010
#cPLoS Computational Biology
#index3372962
#% 
#!
  
#*Cortical Surround Interactions and Perceptual Salience via Natural Scene Statistics.
#@Ruben Coen Cagli,Peter Dayan,Odelia Schwartz
#t2012
#cPLoS Computational Biology
#index3373183
#% 
#!
  
#*Improving the Genome Annotation Using Machine Learning.
#@Gunnar Rätsch,Sören Sonnenburg,Jagan Srinivasan,Hanh Witte,Klaus-Robert Müller,Ralf J. Sommer,Bernhard Schölkopf
#t2007
#cPLoS Computational Biology
#index3373250
#% 
#!
  
#*Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies.
#@Nicholas Furnham,Ian Sillitoe,Gemma L. Holliday,Alison L. Cuff,Roman A. Laskowski,Christine A. Orengo,Janet M. Thornton
#t2012
#cPLoS Computational Biology
#index3372876
#% 
#!
  
#*Can Transgenic Maize Affect Soil Microbial Communities?
#@Christian Mulder,Marja Wouterse,Markus Raubuch,Willem Roelofs,Michiel Rutgers
#t2006
#cPLoS Computational Biology
#index3373135
#% 
#!
  
#*OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities.
#@Ali R. Zomorrodi,Costas D. Maranas
#t2012
#cPLoS Computational Biology
#index3373215
#% 
#!
  
#*A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale.
#@Jason W. Bohland,Caizhi Wu,Helen Barbas,Hemant Bokil,Mihail Bota,Hans C. Breiter,Hollis T. Cline,John C. Doyle,Peter J. Freed,Ralph J. Greenspan,Suzanne N. Haber,Michael Hawrylycz,Daniel G. Herrera,Claus C. Hilgetag,Z. Josh Huang,Allan Jones,Edward G. Jones,Harvey J. Karten,David Kleinfeld,Rolf Kötter,Henry A. Lester,John M. Lin,Brett D. Mensh,Shawn Mikula,Jaak Panksepp,Joseph L. Price,Joseph Safdieh,Clifford B. Saper,Nicholas D. Schiff,Jeremy D. Schmahmann,Bruce W. Stillman,Karel Svoboda,Larry W. Swanson,Arthur W. Toga,David C. Van Essen,James D. Watson,Partha P. Mitra
#t2009
#cPLoS Computational Biology
#index3372911
#% 
#!
  
#*Ligand-Induced Modulation of the Free-Energy Landscape of G Protein-Coupled Receptors Explored by Adaptive Biasing Techniques.
#@Davide Provasi,Marta Camacho-Artacho,Ana Negri,Juan Carlos Mobarec,Marta Filizola
#t2011
#cPLoS Computational Biology
#index3372932
#% 
#!
  
#*Hierarchical Processing of Auditory Objects in Humans.
#@Sukhbinder Kumar,Klaas E. Stephan,Jason D. Warren,Karl J. Friston,Timothy D. Griffiths
#t2007
#cPLoS Computational Biology
#index3372878
#% 
#!
  
#*Interpreting Metabolomic Profiles using Unbiased Pathway Models.
#@Rahul C. Deo,Luke Hunter,Gregory D. Lewis,Guillaume Pare,Ramachandran S. Vasan,Daniel Chasman,Thomas J. Wang,Robert E. Gerszten,Frederick P. Roth
#t2010
#cPLoS Computational Biology
#index3373179
#% 
#!
  
#*Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes.
#@Yang Shen,Ioannis Ch. Paschalidis,Pirooz Vakili,Sandor Vajda
#t2008
#cPLoS Computational Biology
#index3373253
#% 
#!
  
#*Assessing Computational Methods of Cis-Regulatory Module Prediction.
#@Jing Su,Sarah A. Teichmann,Thomas A. Down
#t2010
#cPLoS Computational Biology
#index3373090
#% 
#!
  
#*Bistability and Oscillations in the Huang-Ferrell Model of MAPK Signaling.
#@Liang Qiao,Robert B. Nachbar,Ioannis G. Kevrekidis,Stanislav Y. Shvartsman
#t2007
#cPLoS Computational Biology
#index3373138
#% 
#!
  
#*Bioinformatics in Malaysia: Hope, Initiative, Effort, Reality, and Challenges.
#@Azura M. H. Zeti,Mohd Shahir Shamsir,Khairina Tajul-Arifin,Amir F. Merican,Rahmah Mohamed,Sheila Nathan,Nor Muhammad Mahadi,Suhaimi Napis,Tin Wee Tan
#t2009
#cPLoS Computational Biology
#index3373102
#% 
#!
  
#*Predicting Phenotypic Diversity and the Underlying Quantitative Molecular Transitions.
#@Claudiu A. Giurumescu,Paul W. Sternberg,Anand R. Asthagiri
#t2009
#cPLoS Computational Biology
#index3372931
#% 
#!
  
#*The Evolutionary Dynamics of a Rapidly Mutating Virus within and between Hosts: The Case of Hepatitis C Virus.
#@Fabio Luciani,Samuel Alizon
#t2009
#cPLoS Computational Biology
#index3373266
#% 
#!
  
#*The Effect of Sustained Compression on Oxygen Metabolic Transport in the Intervertebral Disc Decreases with Degenerative Changes.
#@Andrea Malandrino,Jérôme Noailly,Damien Lacroix
#t2011
#cPLoS Computational Biology
#index3372898
#% 
#!
  
#*Representing along with Information in a Model of a Cortical Patch.
#@Yasser Roudi,Alessandro Treves
#t2008
#cPLoS Computational Biology
#index3373115
#% 
#!
  
#*A Dual Receptor Crosstalk Model of G-Protein-Coupled Signal Transduction.
#@Patrick Flaherty,Mala L. Radhakrishnan,Tuan Dinh,Robert A. Rebres,Tamara I. Roach,Michael I. Jordan,Adam P. Arkin
#t2008
#cPLoS Computational Biology
#index3373109
#% 
#!
  
#*Repressor Dimerization in the Zebrafish Somitogenesis Clock.
#@Olivier Cinquin
#t2007
#cPLoS Computational Biology
#index3373271
#% 
#!
  
#*Inductive Game Theory and the Dynamics of Animal Conflict.
#@Simon Dedeo,David C. Krakauer,Jessica C. Flack
#t2010
#cPLoS Computational Biology
#index3372995
#% 
#!
  
#*Allosteric Communication in Myosin V: From Small Conformational Changes to Large Directed Movements.
#@M. Cecchini,A. Houdusse,Martin Karplus
#t2008
#cPLoS Computational Biology
#index3373327
#% 
#!
  
#*Learning the Optimal Control of Coordinated Eye and Head Movements.
#@Sohrab Saeb,Cornelius Weber,Jochen Triesch
#t2011
#cPLoS Computational Biology
#index3373079
#% 
#!
  
#*Signal Propagation in Proteins and Relation to Equilibrium Fluctuations.
#@Chakra Chennubhotla,Ivet Bahar
#t2007
#cPLoS Computational Biology
#index3373191
#% 
#!
  
#*On Side-Chain Conformational Entropy of Proteins.
#@Jinfeng Zhang,Jun S. Liu
#t2006
#cPLoS Computational Biology
#index3372940
#% 
#!
  
#*Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model.
#@Gerton Lunter,Chris P. Ponting,Jotun Hein
#t2006
#cPLoS Computational Biology
#index3373082
#% 
#!
  
#*State Based Model of Long-Term Potentiation and Synaptic Tagging and Capture.
#@Adam B. Barrett,Guy O. Billings,Richard G. M. Morris,Mark C. W. van Rossum
#t2009
#cPLoS Computational Biology
#index3372917
#% 
#!
  
#*Categorial Compositionality II: Universal Constructions and a General Theory of (Quasi-)Systematicity in Human Cognition.
#@Steven Phillips,William H. Wilson
#t2011
#cPLoS Computational Biology
#index3372926
#% 
#!
  
#*Slowness and Sparseness Lead to Place, Head-Direction, and Spatial-View Cells.
#@Mathias Franzius,Henning Sprekeler,Laurenz Wiskott
#t2007
#cPLoS Computational Biology
#index3373322
#% 
#!
  
#*A Bayesian Partition Method for Detecting Pleiotropic and Epistatic eQTL Modules.
#@Wei Zhang,Jun Zhu,Eric E. Schadt,Jun S. Liu
#t2010
#cPLoS Computational Biology
#index3372949
#% 
#!
  
#*Model-Based Deconvolution of Cell Cycle Time-Series Data Reveals Gene Expression Details at High Resolution.
#@Dan Siegal-Gaskins,Joshua N. Ash,Sean Crosson
#t2009
#cPLoS Computational Biology
#index3373046
#% 
#!
  
#*Impact of Network Structure and Cellular Response on Spike Time Correlations.
#@James Trousdale,Yu Hu,Eric Shea-Brown,Kresimir Josic
#t2012
#cPLoS Computational Biology
#index3373301
#% 
#!
  
#*Stochastic Simulations on the Reliability of Action Potential Propagation in Thin Axons.
#@A. Aldo Faisal,Simon B. Laughlin
#t2007
#cPLoS Computational Biology
#index3373360
#% 
#!
  
#*Causal Modeling Using Network Ensemble Simulations of Genetic and Gene Expression Data Predicts Genes Involved in Rheumatoid Arthritis.
#@Heming Xing,Paul D. McDonagh,Jadwiga Bienkowska,Tanya Cashorali,Karl Runge,Robert E. Miller,Dave DeCaprio,Bruce Church,Ronenn Roubenoff,Iya G. Khalil,John Carulli
#t2011
#cPLoS Computational Biology
#index3372889
#% 
#!
  
#*Dynamic Modelling under Uncertainty: The Case of Energy Metabolism.
#@Fiona Achcar,Eduard J. Kerkhoven,Barbara M. Bakker,Michael P. Barrett,Rainer Breitling
#t2012
#cPLoS Computational Biology
#index3373248
#% 
#!
  
#*Prediction of Functional Sites Based on the Fuzzy Oil Drop Model.
#@Michal Brylinski,Katarzyna Prymula,Wiktor Jurkowski,Marek Kochanczyk,Ewa Stawowczyk,Leszek Konieczny,Irena Roterman
#t2007
#cPLoS Computational Biology
#index3372861
#% 
#!
  
#*Specialization Can Drive the Evolution of Modularity.
#@Carlos Espinosa-Soto,Andreas Wagner
#t2010
#cPLoS Computational Biology
#index3373173
#% 
#!
  
#*Prediction of Cell Penetrating Peptides by Support Vector Machines.
#@William S. Sanders,C. Ian Johnston,Susan M. Bridges,Shane C. Burgess,Kenneth O. Willeford
#t2011
#cPLoS Computational Biology
#index3372953
#% 
#!
  
#*Adaptive Gain Modulation in V1 Explains Contextual Modifications during Bisection Learning.
#@Roland Schäfer,Eleni Vasilaki,Walter Senn
#t2009
#cPLoS Computational Biology
#index3373209
#% 
#!
  
#*Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species.
#@Shiri Freilich,Anat Kreimer,Elhanan Borenstein,Uri Gophna,Roded Sharan,Eytan Ruppin
#t2010
#cPLoS Computational Biology
#index3373314
#% 
#!
  
#*Signalling and the Evolution of Cooperative Foraging in Dynamic Environments.
#@Colin J. Torney,Andrew Berdahl,Iain D. Couzin
#t2011
#cPLoS Computational Biology
#index3373182
#% 
#!
  
#*Significance of Input Correlations in Striatal Function.
#@Man Yi Yim,Ad Aertsen,Arvind Kumar
#t2011
#cPLoS Computational Biology
#index3373200
#% 
#!
  
#*Protein and DNA Sequence Determinants of Thermophilic Adaptation.
#@Konstantin B. Zeldovich,Igor N. Berezovsky,Eugene I. Shakhnovich
#t2007
#cPLoS Computational Biology
#index3372875
#% 
#!
  
#*Inferring Hypotheses on Functional Relationships of Genes: Analysis of the Subtilase Gene Family.
#@Carsten Rautengarten,Dirk Steinhauser,Dirk Büssis,Annick Stintzi,Andreas Schaller,Joachim Kopka,Thomas Altmann
#t2005
#cPLoS Computational Biology
#index3373023
#% 
#!
  
#*Pavlovian-Instrumental Interaction in 'Observing Behavior'.
#@Ulrik R. Beierholm,Peter Dayan
#t2010
#cPLoS Computational Biology
#index3373227
#% 
#!
  
#*Monte Carlo Analysis of Neck Linker Extension in Kinesin Molecular Motors.
#@Matthew L. Kutys,John Fricks,William O. Hancock
#t2010
#cPLoS Computational Biology
#index3373101
#% 
#!
  
#*Chemically Based Mathematical Model for Development of Cerebral Cortical Folding Patterns.
#@Deborah A. Striegel,Monica K. Hurdal
#t2009
#cPLoS Computational Biology
#index3372942
#% 
#!
  
#*"Simple Rules for Editors"? Here Is One Rule to Tackle Neglected Problems of Publishing: Response from PLoS.
#@Mark Patterson,Barbara Cohen
#t2007
#cPLoS Computational Biology
#index3373146
#% 
#!
  
#*Establishment and Validation of Computational Model for MT1-MMP Dependent ECM Degradation and Intervention Strategies.
#@Daisuke Hoshino,Naohiko Koshikawa,Takashi Suzuki,Vito Quaranta,Alissa M. Weaver,Motoharu Seiki,Kazuhisa Ichikawa
#t2012
#cPLoS Computational Biology
#index3373124
#% 
#!
  
#*The Dynamical Mechanism of Auto-Inhibition of AMP-Activated Protein Kinase.
#@Cheng Peng,Teresa Head-Gordon
#t2011
#cPLoS Computational Biology
#index3373345
#% 
#!
  
#*Genome-Scale Reconstruction of 's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization.
#@Ines Thiele,Neema Jamshidi,Ronan M. T. Fleming,Bernhard O. Palsson
#t2009
#cPLoS Computational Biology
#index3373037
#% 
#!
  
#*Strategies for Identifying RNA Splicing Regulatory Motifs and Predicting Alternative Splicing Events.
#@Dirk Holste,Uwe Ohler
#t2008
#cPLoS Computational Biology
#index3373110
#% 
#!
  
#*ISCB Honors Temple F. Smith and Eran Segal.
#@Merry Maisel
#t2007
#cPLoS Computational Biology
#index3373340
#% 
#!
  
#*The Genomic Pattern of tDNA Operon Expression in .
#@David H. Ardell,Leif A. Kirsebom
#t2005
#cPLoS Computational Biology
#index3373281
#% 
#!
  
#*Accuracy of Protein-Protein Binding Sites in High-Throughput Template-Based Modeling.
#@Petras J. Kundrotas,Ilya A. Vakser
#t2010
#cPLoS Computational Biology
#index3373163
#% 
#!
  
#*Shunting Inhibition Controls the Gain Modulation Mediated by Asynchronous Neurotransmitter Release in Early Development.
#@Vladislav Volman,Herbert Levine,Terrence J. Sejnowski
#t2010
#cPLoS Computational Biology
#index3373096
#% 
#!
  
#*Integrated Information in Discrete Dynamical Systems: Motivation and Theoretical Framework.
#@David Balduzzi,Giulio Tononi
#t2008
#cPLoS Computational Biology
#index3373073
#% 
#!
  
#*Hydrogen-Bond Driven Loop-Closure Kinetics in Unfolded Polypeptide Chains.
#@Isabella Daidone,Hannes Neuweiler,Sören Doose,Markus Sauer,Jeremy C. Smith
#t2010
#cPLoS Computational Biology
#index3373319
#% 
#!
  
#*A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules.
#@Bjoern Peters,Huynh-Hoa Bui,Sune Frankild,Morten Nielsen,Claus Lundegaard,Emrah Kostem,Derek Basch,Kasper Lamberth,Mikkel Harndahl,Ward Fleri,Stephen S. Wilson,John Sidney,Ole Lund,Søren Buus,Alessandro Sette
#t2006
#cPLoS Computational Biology
#index3373309
#% 
#!
  
#*Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web.
#@Duncan Hull,Steve Pettifer,Douglas B. Kell
#t2008
#cPLoS Computational Biology
#index3372860
#% 
#!
  
#*Genetic Co-Occurrence Network across Sequenced Microbes.
#@Pan-Jun Kim,Nathan D. Price
#t2011
#cPLoS Computational Biology
#index3373051
#% 
#!
  
#*Matrix Formalism to Describe Functional States of Transcriptional Regulatory Systems.
#@Erwin P. Gianchandani,Jason A. Papin,Nathan D. Price,Andrew R. Joyce,Bernhard Ø. Palsson
#t2006
#cPLoS Computational Biology
#index3373311
#% 
#!
  
#*Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series.
#@David A. Rasmussen,Oliver Ratmann,Katia Koelle
#t2011
#cPLoS Computational Biology
#index3373304
#% 
#!
  
#*A Generic Mechanism of Emergence of Amyloid Protofilaments from Disordered Oligomeric Aggregates.
#@Stefan Auer,Filip Meersman,Christopher M. Dobson,Michele Vendruscolo
#t2008
#cPLoS Computational Biology
#index3373192
#% 
#!
  
#*Decoding of Superimposed Traces Produced by Direct Sequencing of Heterozygous Indels.
#@Dmitry A. Dmitriev,Roman A. Rakitov
#t2008
#cPLoS Computational Biology
#index3373199
#% 
#!
  
#*Protein Homology Network Families Reveal Step-Wise Diversification of Type III and Type IV Secretion Systems.
#@Duccio Medini,Antonello Covacci,Claudio Donati
#t2006
#cPLoS Computational Biology
#index3373218
#% 
#!
  
#*A Threading-Based Method for the Prediction of DNA-Binding Proteins with Application to the Human Genome.
#@Mu Gao,Jeffrey Skolnick
#t2009
#cPLoS Computational Biology
#index3372981
#% 
#!
  
#*Computational Modeling of the Hematopoietic Erythroid-Myeloid Switch Reveals Insights into Cooperativity, Priming, and Irreversibility.
#@Vijay Chickarmane,Tariq Enver,Carsten Peterson
#t2009
#cPLoS Computational Biology
#index3372857
#% 
#!
  
#*An Experimental and Computational Study of the Effect of ActA Polarity on the Speed of Actin-based Motility.
#@Susanne M. Rafelski,Jonathan B. Alberts,Garrett M. Odell
#t2009
#cPLoS Computational Biology
#index3373292
#% 
#!
  
#*Harvesting Candidate Genes Responsible for Serious Adverse Drug Reactions from a Chemical-Protein Interactome.
#@Lun Yang,Jian Chen,Lin He
#t2009
#cPLoS Computational Biology
#index3373220
#% 
#!
  
#*Estimating the Stoichiometry of HIV Neutralization.
#@Carsten Magnus,Roland R. Regoes
#t2010
#cPLoS Computational Biology
#index3372959
#% 
#!
  
#*A Systems Approach Uncovers Restrictions for Signal Interactions Regulating Genome-wide Responses to Nutritional Cues in Arabidopsis.
#@Gabriel Krouk,Daniel Tranchina,Laurence Lejay,Alexis A. Cruikshank,Dennis Shasha,Gloria M. Coruzzi,Rodrigo A. Gutiérrez
#t2009
#cPLoS Computational Biology
#index3372952
#% 
#!
  
#*Nonlinear Muscles, Passive Viscoelasticity and Body Taper Conspire To Create Neuromechanical Phase Lags in Anguilliform Swimmers.
#@Tyler McMillen,T. Williams,P. Holmes
#t2008
#cPLoS Computational Biology
#index3373017
#% 
#!
  
#*Impact of Fast Sodium Channel Inactivation on Spike Threshold Dynamics and Synaptic Integration.
#@Jonathan Platkiewicz,Romain Brette
#t2011
#cPLoS Computational Biology
#index3373151
#% 
#!
  
#*Differences in Reactivation of Tuberculosis Induced from Anti-TNF Treatments Are Based on Bioavailability in Granulomatous Tissue.
#@Simeone Marino,Dhruv Sud,Hillarie Plessner,Philana Ling Lin,John Chan,JoAnne L. Flynn,Denise E. Kirschner
#t2007
#cPLoS Computational Biology
#index3372867
#% 
#!
  
#*Dynamical Principles of Two-Component Genetic Oscillators.
#@Raúl Guantes,Juan F. Poyatos
#t2006
#cPLoS Computational Biology
#index3373274
#% 
#!
  
#*Statistical Resolution of Ambiguous HLA Typing Data.
#@Jennifer Listgarten,Zabrina L. Brumme,Carl Myers Kadie,Gao Xiaojiang,Bruce D. Walker,Mary Carrington,Philip J. R. Goulder,David Heckerman
#t2008
#cPLoS Computational Biology
#index3372903
#% 
#!
  
#*Stable, Precise, and Reproducible Patterning of Bicoid and Hunchback Molecules in the Early Embryo.
#@Yurie Okabe-Oho,Hiroki Murakami,Suguru Oho,Masaki Sasai
#t2009
#cPLoS Computational Biology
#index3373357
#% 
#!
  
#*Critical Dynamics in the Evolution of Stochastic Strategies for the Iterated Prisoner's Dilemma.
#@Dimitris Iliopoulos,Arend Hintze,Christoph Adami
#t2010
#cPLoS Computational Biology
#index3372894
#% 
#!
  
#*A Compact Statistical Model of the Song Syntax in Bengalese Finch.
#@Dezhe Z. Jin,Alexay A. Kozhevnikov
#t2011
#cPLoS Computational Biology
#index3373245
#% 
#!
  
#*Maximization of Learning Speed in the Motor Cortex Due to Neuronal Redundancy.
#@Ken Takiyama,Masato Okada
#t2012
#cPLoS Computational Biology
#index3373081
#% 
#!
  
#*Inherent High Correlation of Individual Motility Enhances Population Dispersal in a Heterotrophic, Planktonic Protist.
#@Susanne Menden-Deuer
#t2010
#cPLoS Computational Biology
#index3373366
#% 
#!
  
#*Transcriptional Regulation by Competing Transcription Factor Modules.
#@Rutger Hermsen,Sander Tans,Pieter Rein ten Wolde
#t2006
#cPLoS Computational Biology
#index3373060
#% 
#!
  
#*Viral Proteins Acquired from a Host Converge to Simplified Domain Architectures.
#@Nadav Rappoport,Michal Linial
#t2012
#cPLoS Computational Biology
#index3373032
#% 
#!
  
#*Signal Processing in the TGF-β Superfamily Ligand-Receptor Network.
#@Jose M. G. Vilar,Ronald Jansen,Chris Sander
#t2006
#cPLoS Computational Biology
#index3373087
#% 
#!
  
#*Coding "What" and "When" in the Archer Fish Retina.
#@Genadiy Vasserman,Maoz Shamir,Avi Ben Simon,Ronen Segev
#t2010
#cPLoS Computational Biology
#index3373055
#% 
#!
  
#*Prediction of Drug Combinations by Integrating Molecular and Pharmacological Data.
#@Xing-Ming Zhao,Murat Iskar,Georg Zeller,Michael Kuhn,Vera van Noort,Peer Bork
#t2011
#cPLoS Computational Biology
#index3373284
#% 
#!
  
#*Cadherin-Dependent Cell Morphology in an Epithelium: Constructing a Quantitative Dynamical Model.
#@Ian M. Gemp,Richard W. Carthew,Sascha Hilgenfeldt
#t2011
#cPLoS Computational Biology
#index3373337
#% 
#!
  
#*Identification of Crosstalk between Phosphoprotein Signaling Pathways in RAW 264.7 Macrophage Cells.
#@Shakti Gupta,Mano Ram Maurya,Shankar Subramaniam
#t2010
#cPLoS Computational Biology
#index3372992
#% 
#!
  
#*BETASCAN: Probable β-amyloids Identified by Pairwise Probabilistic Analysis.
#@Allen W. Bryan Jr.,Matthew Menke,Lenore J. Cowen,Susan Lindquist,Bonnie Berger
#t2009
#cPLoS Computational Biology
#index3373347
#% 
#!
  
#*State-Space Analysis of Time-Varying Higher-Order Spike Correlation for Multiple Neural Spike Train Data.
#@Hideaki Shimazaki,Shun-ichi Amari,Emery N. Brown,Sonja Grün
#t2012
#cPLoS Computational Biology
#index3373238
#% 
#!
  
#*An AP Endonuclease 1-DNA Polymerase β Complex: Theoretical Prediction of Interacting Surfaces.
#@Alexej Abyzov,Alper Uzun,Phyllis R. Strauss,Valentin A. Ilyin
#t2008
#cPLoS Computational Biology
#index3373005
#% 
#!
  
#*Computational Models of the Notch Network Elucidate Mechanisms of Context-dependent Signaling.
#@Smita Agrawal,Colin Archer,David V. Schaffer
#t2009
#cPLoS Computational Biology
#index3373026
#% 
#!
  
#*Heat Shock Response in CHO Mammalian Cells Is Controlled by a Nonlinear Stochastic Process.
#@Ovidiu Lipan,Jean-Marc Navenot,Zixuan Wang,Lei Huang,Stephen C. Peiper
#t2007
#cPLoS Computational Biology
#index3373048
#% 
#!
  
#*Evolutionary Models for Formation of Network Motifs and Modularity in the Transcription Factor Network.
#@Jonathan J. Ward,Janet M. Thornton
#t2007
#cPLoS Computational Biology
#index3373256
#% 
#!
  
#*Four Distances between Pairs of Amino Acids Provide a Precise Description of their Interaction.
#@Mati Cohen,Vladimir Potapov,Gideon Schreiber
#t2009
#cPLoS Computational Biology
#index3373028
#% 
#!
  
#*Computational Models of HIV-1 Resistance to Gene Therapy Elucidate Therapy Design Principles.
#@Sharon Aviran,Priya S. Shah,David V. Schaffer,Adam P. Arkin
#t2010
#cPLoS Computational Biology
#index3372883
#% 
#!
  
#*Binding Free Energy Landscape of Domain-Peptide Interactions.
#@Iskra Staneva,Stefan Wallin
#t2011
#cPLoS Computational Biology
#index3373174
#% 
#!
  
#*Noise Propagation and Signaling Sensitivity in Biological Networks: A Role for Positive Feedback.
#@Gil Hornung,Naama Barkai
#t2008
#cPLoS Computational Biology
#index3373217
#% 
#!
  
#*Fundamental Limits to Position Determination by Concentration Gradients.
#@Filipe Tostevin,Pieter Rein ten Wolde,Martin Howard
#t2007
#cPLoS Computational Biology
#index3373263
#% 
#!
  
#*Thermodynamic State Ensemble Models of -Regulation.
#@Marc S. Sherman,Barak A. Cohen
#t2012
#cPLoS Computational Biology
#index3373330
#% 
#!
  
#*Continuous Attractors with Morphed/Correlated Maps.
#@Sandro Romani,Misha Tsodyks
#t2010
#cPLoS Computational Biology
#index3373018
#% 
#!
  
#*Does Mutational Robustness Inhibit Extinction by Lethal Mutagenesis in Viral Populations?
#@Eamon B. O'Dea,Thomas E. Keller,Claus O. Wilke
#t2010
#cPLoS Computational Biology
#index3373140
#% 
#!
  
#*Structure-Templated Predictions of Novel Protein Interactions from Sequence Information.
#@Doron Betel,Kevin E. Breitkreuz,Ruth Isserlin,Danielle Dewar-Darch,Mike Tyers,Christopher W. V. Hogue
#t2007
#cPLoS Computational Biology
#index3373137
#% 
#!
  
#*The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes.
#@Florent E. Angly,Dana Willner,Alejandra Prieto-Davó,Robert A. Edwards,Robert Schmieder,Rebecca Vega-Thurber,Dionysios A. Antonopoulos,Katie Barott,Matthew T. Cottrell,Christelle Desnues,Elizabeth A. Dinsdale,Mike Furlan,Matthew Haynes,Matthew R. Henn,Yongfei Hu,David L. Kirchman,Tracey McDole,John D. McPherson,Folker Meyer,R. Michael Miller,Egbert Mundt,Robert K. Naviaux,Beltran Rodriguez-Mueller,Rick Stevens,Linda Wegley,Lixin Zhang,Baoli Zhu,Forest Rohwer
#t2009
#cPLoS Computational Biology
#index3373358
#% 
#!
  
#*The 20S Proteasome Splicing Activity Discovered by SpliceMet.
#@Juliane Liepe,Michele Mishto,Kathrin Textoris-Taube,Katharina Janek,Christin Keller,Petra Henklein,Peter Michael Kloetzel,Alexey Zaikin
#t2010
#cPLoS Computational Biology
#index3373302
#% 
#!
  
#*GrowMatch: An Automated Method for Reconciling / Growth Predictions.
#@Vinay Satish Kumar,Costas D. Maranas
#t2009
#cPLoS Computational Biology
#index3372971
#% 
#!
  
#*Time to Organize the Bioinformatics Resourceome.
#@Nicola Cannata,Emanuela Merelli,Russ B. Altman
#t2005
#cPLoS Computational Biology
#index3373312
#% 
#!
  
#*The Generation of Promoter-Mediated Transcriptional Noise in Bacteria.
#@Namiko Mitarai,Ian B. Dodd,Michael T. Crooks,Kim Sneppen
#t2008
#cPLoS Computational Biology
#index3373084
#% 
#!
  
#*Quantitative Analysis of Mechanisms That Govern Red Blood Cell Age Structure and Dynamics during Anaemia.
#@Nicholas J. Savill,William Chadwick,Sarah E. Reece
#t2009
#cPLoS Computational Biology
#index3373038
#% 
#!
  
#*Microarray Analysis of LTR Retrotransposon Silencing Identifies Hdac1 as a Regulator of Retrotransposon Expression in Mouse Embryonic Stem Cells.
#@Judith Reichmann,James H. Crichton,Monika J. Madej,Mary Taggart,Philippe Gautier,Jose Luis Garcia-Perez,Richard R. Meehan,Ian R. Adams
#t2012
#cPLoS Computational Biology
#index3373074
#% 
#!
  
#*A Viral Dynamic Model for Treatment Regimens with Direct-acting Antivirals for Chronic Hepatitis C Infection.
#@Bambang S. Adiwijaya,Tara L. Kieffer,Joshua Henshaw,Karen Eisenhauer,Holly Kimko,John J. Alam,Robert S. Kauffman,Varun Garg
#t2012
#cPLoS Computational Biology
#index3372923
#% 
#!
  
#*Tumor-Immune Interaction, Surgical Treatment, and Cancer Recurrence in a Mathematical Model of Melanoma.
#@Steffen Eikenberry,Craig J. Thalhauser,Yang Kuang
#t2009
#cPLoS Computational Biology
#index3373008
#% 
#!
  
#*Tipping the Balance: Robustness of Tip Cell Selection, Migration and Fusion in Angiogenesis.
#@Katie Bentley,Giovanni Mariggi,Holger Gerhardt,Paul A. Bates
#t2009
#cPLoS Computational Biology
#index3373176
#% 
#!
  
#*The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function.
#@Marco Punta,Yanay Ofran
#t2008
#cPLoS Computational Biology
#index3372868
#% 
#!
  
#*Evidence for Gluconeogenesis from Fatty Acids in Humans.
#@Christoph Kaleta,Luis F. de Figueiredo,Sarah Werner,Reinhard Guthke,Michael Ristow,Stefan Schuster
#t2011
#cPLoS Computational Biology
#index3373291
#% 
#!
  
#*Temporal Controls of the Asymmetric Cell Division Cycle in .
#@Shenghua Li,Paul Brazhnik,Bruno W. S. Sobral,John J. Tyson
#t2009
#cPLoS Computational Biology
#index3373259
#% 
#!
  
#*Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families.
#@Kyle Ellrott,Lukasz Jaroszewski,Weizhong Li,John C. Wooley,Adam Godzik
#t2010
#cPLoS Computational Biology
#index3372913
#% 
#!
  
#*A Single-Rate Context-Dependent Learning Process Underlies Rapid Adaptation to Familiar Object Dynamics.
#@James N. Ingram,Ian S. Howard,J. Randall Flanagan,Daniel M. Wolpert
#t2011
#cPLoS Computational Biology
#index3372941
#% 
#!
  
#*Predicting Novel Binding Modes of Agonists to β Adrenergic Receptors Using All-Atom Molecular Dynamics Simulations.
#@Stefano Vanni,Marilisa Neri,Ivano Tavernelli,Ursula Rothlisberger
#t2011
#cPLoS Computational Biology
#index3372989
#% 
#!
  
#*A Novel Extended Granger Causal Model Approach Demonstrates Brain Hemispheric Differences during Face Recognition Learning.
#@Tian Ge,Keith M. Kendrick,Jianfeng Feng
#t2009
#cPLoS Computational Biology
#index3373223
#% 
#!
  
#*A Threshold Equation for Action Potential Initiation.
#@Jonathan Platkiewicz,Romain Brette
#t2010
#cPLoS Computational Biology
#index3373063
#% 
#!
  
#*Protein Design Using Continuous Rotamers.
#@Pablo Gainza,Kyle E. Roberts,Bruce Randall Donald
#t2012
#cPLoS Computational Biology
#index3373282
#% 
#!
  
#*Stern-Judging: A Simple, Successful Norm Which Promotes Cooperation under Indirect Reciprocity.
#@Jorge M. Pacheco,Francisco C. Santos,Fabio A. C. C. Chalub
#t2006
#cPLoS Computational Biology
#index3373273
#% 
#!
  
#*ISCB Public Policy Statement on Open Access to Scientific and Technical Research Literature.
#@Richard H. Lathrop,Burkhard Rost
#t2011
#cPLoS Computational Biology
#index3373210
#% 
#!
  
#*Literature Mining for the Discovery of Hidden Connections between Drugs, Genes and Diseases.
#@Raoul Frijters,Marianne van Vugt,Ruben Smeets,René C. van Schaik,Jacob de Vlieg,Wynand Alkema
#t2010
#cPLoS Computational Biology
#index3372859
#% 
#!
  
#*Using Pre-existing Microarray Datasets to Increase Experimental Power: Application to Insulin Resistance.
#@Bernie J. Daigle Jr.,Alicia Deng,Tracey McLaughlin,Samuel W. Cushman,Margaret C. Cam,Gerald Reaven,Philip S. Tsao,Russ B. Altman
#t2010
#cPLoS Computational Biology
#index3372934
#% 
#!
  
#*Robustness under Functional Constraint: The Genetic Network for Temporal Expression in Neurogenesis.
#@Akihiko Nakajima,Takako Isshiki,Kunihiko Kaneko,Shuji Ishihara
#t2010
#cPLoS Computational Biology
#index3372901
#% 
#!
  
#*A Stevedore's Protein Knot.
#@Daniel Bölinger,Joanna I. Sulkowska,Hsiao-Ping Hsu,Leonid A. Mirny,Mehran Kardar,José N. Onuchic,Peter Virnau
#t2010
#cPLoS Computational Biology
#index3373181
#% 
#!
  
#*Combinatorial Gene Regulation Using Auto-Regulation.
#@Rutger Hermsen,Bas Ursem,Pieter Rein ten Wolde
#t2010
#cPLoS Computational Biology
#index3373268
#% 
#!
  
#*Striking Similarities in the Genomic Distribution of Tandemly Arrayed Genes in and Rice.
#@Carene Rizzon,Loïc Ponger,Brandon S. Gaut
#t2006
#cPLoS Computational Biology
#index3372906
#% 
#!
  
#*Changes in Dynamics upon Oligomerization Regulate Substrate Binding and Allostery in Amino Acid Kinase Family Members.
#@Enrique Marcos,Ramon Crehuet,Ivet Bahar
#t2011
#cPLoS Computational Biology
#index3372873
#% 
#!
  
#*Ten Simple Rules for Making Good Oral Presentations.
#@Philip E. Bourne
#t2007
#cPLoS Computational Biology
#index3373045
#% 
#!
  
#*Predictive Features of Persistent Activity Emergence in Regular Spiking and Intrinsic Bursting Model Neurons.
#@Kyriaki Sidiropoulou,Panayiota Poirazi
#t2012
#cPLoS Computational Biology
#index3372858
#% 
#!
  
#*Landscape Epidemiology and Control of Pathogens with Cryptic and Long-Distance Dispersal: Sudden Oak Death in Northern Californian Forests.
#@João A. N. Filipe,Richard C. Cobb,Ross K. Meentemeyer,Christopher A. Lee,Yana S. Valachovic,Alex R. Cook,David M. Rizzo,Christopher A. Gilligan
#t2012
#cPLoS Computational Biology
#index3373091
#% 
#!
  
#*Spontaneous Quaternary and Tertiary T-R Transitions of Human Hemoglobin in Molecular Dynamics Simulation.
#@Jochen S. Hub,Marcus B. Kubitzki,Bert L. de Groot
#t2010
#cPLoS Computational Biology
#index3372951
#% 
#!
  
#*ISMB 2006.
#@Goran Neshich,Philip E. Bourne,Søren Brunak
#t2006
#cPLoS Computational Biology
#index3372982
#% 
#!
  
#*Pathway Switching Explains the Sharp Response Characteristic of Hypoxia Response Network.
#@Yihai Yu,Guanyu Wang,Rahul Simha,Weiqun Peng,Frank Turano,Chen Zeng
#t2007
#cPLoS Computational Biology
#index3372960
#% 
#!
  
#*Identification of Potential Pathway Mediation Targets in Toll-like Receptor Signaling.
#@Fan Li,Ines Thiele,Neema Jamshidi,Bernhard O. Palsson
#t2009
#cPLoS Computational Biology
#index3372950
#% 
#!
  
#*Src Kinase Conformational Activation: Thermodynamics, Pathways, and Mechanisms.
#@Sichun Yang,Benoît Roux
#t2008
#cPLoS Computational Biology
#index3373189
#% 
#!
  
#*Validation of Skeletal Muscle -Regulatory Module Predictions Reveals Nucleotide Composition Bias in Functional Enhancers.
#@Andrew T. Kwon,Alice Yi Chou,David J. Arenillas,Wyeth W. Wasserman
#t2011
#cPLoS Computational Biology
#index3373369
#% 
#!
  
#*A Mapping of Drug Space from the Viewpoint of Small Molecule Metabolism.
#@James Corey Adams,Michael J. Keiser,Li Basuino,Henry F. Chambers,Deok-Sun Lee,Olaf G. Wiest,Patricia C. Babbitt
#t2009
#cPLoS Computational Biology
#index3373237
#% 
#!
  
#*Ab Initio Modeling of the Herpesvirus VP26 Core Domain Assessed by CryoEM Density.
#@Matthew L. Baker,Wen Jiang,William J. Wedemeyer,Frazer J. Rixon,David Baker,Wah Chiu
#t2006
#cPLoS Computational Biology
#index3373020
#% 
#!
  
#*Non-Linear Neuronal Responses as an Emergent Property of Afferent Networks: A Case Study of the Locust Lobula Giant Movement Detector.
#@Sergi Bermúdez i Badia,Ulysses Bernardet,Paul F. M. J. Verschure
#t2010
#cPLoS Computational Biology
#index3372933
#% 
#!
  
#*Ten Simple Rules for Getting Published.
#@Philip E. Bourne
#t2005
#cPLoS Computational Biology
#index3373007
#% 
#!
  
#*Treatment-Mediated Alterations in HIV Fitness Preserve CD4 T Cell Counts but Have Minimal Effects on Viral Load.
#@Naveen K. Vaidya,Libin Rong,Vincent C. Marconi,Daniel R. Kuritzkes,Steven G. Deeks,Alan S. Perelson
#t2010
#cPLoS Computational Biology
#index3373132
#% 
#!
  
#*In Remembrance: Reinhart Heinrich 1946-2006.
#@Thomas Höfer
#t2007
#cPLoS Computational Biology
#index3373161
#% 
#!
  
#*Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling.
#@Stefan Engelen,Ladislas A. Trojan,Sophie Sacquin-Mora,Richard Lavery,Alessandra Carbone
#t2009
#cPLoS Computational Biology
#index3373025
#% 
#!
  
#*Beyond the Binding Site: The Role of the β2 - β3 Loop and Extra-Domain Structures in PDZ Domains.
#@Stefano Mostarda,David Gfeller,Francesco Rao
#t2012
#cPLoS Computational Biology
#index3372984
#% 
#!
  
#*Order and Stochastic Dynamics in Drosophila Planar Cell Polarity.
#@Yoram Burak,Boris I. Shraiman
#t2009
#cPLoS Computational Biology
#index3373364
#% 
#!
  
#*Excitability Constraints on Voltage-Gated Sodium Channels.
#@Elaine Angelino,Michael P. Brenner
#t2007
#cPLoS Computational Biology
#index3372974
#% 
#!
  
#*Statistics of Knots, Geometry of Conformations, and Evolution of Proteins.
#@Rhonald C. Lua,Alexander Y. Grosberg
#t2006
#cPLoS Computational Biology
#index3372979
#% 
#!
  
#*A Neurophysiologically Plausible Population Code Model for Feature Integration Explains Visual Crowding.
#@Ronald Van den Berg,Jos B. T. M. Roerdink,Frans W. Cornelissen
#t2010
#cPLoS Computational Biology
#index3372969
#% 
#!
  
#*Determination of the Processes Driving the Acquisition of Immunity to Malaria Using a Mathematical Transmission Model.
#@João A. N. Filipe,Eleanor M. Riley,Christopher J. Drakeley,Colin J. Sutherland,Azra C. Ghani
#t2007
#cPLoS Computational Biology
#index3372916
#% 
#!
  
#*(A)Symmetric Stem Cell Replication and Cancer.
#@David Dingli,Arne Traulsen,Franziska Michor
#t2007
#cPLoS Computational Biology
#index3373129
#% 
#!
  
#*On the Growth of Scientific Knowledge: Yeast Biology as a Case Study.
#@Xionglei He,Jianzhi Zhang
#t2009
#cPLoS Computational Biology
#index3373365
#% 
#!
  
#*An Integrative Method for Accurate Comparative Genome Mapping.
#@Firas Swidan,Eduardo P. C. Rocha,Michael Shmoish,Ron Y. Pinter
#t2006
#cPLoS Computational Biology
#index3373121
#% 
#!
  
#*Quantifying Aggregated Uncertainty in Malaria Prevalence and Populations at Risk Efficient Space-Time Geostatistical Joint Simulation.
#@Peter W. Gething,Anand P. Patil,Simon I. Hay
#t2010
#cPLoS Computational Biology
#index3373058
#% 
#!
  
#*Hyperbolic Planforms in Relation to Visual Edges and Textures Perception.
#@Pascal Chossat,Olivier P. Faugeras
#t2009
#cPLoS Computational Biology
#index3373015
#% 
#!
  
#*A Human-Specific Protein-Coding Gene Associated with Human Brain Functions.
#@Chuan-Yun Li,Yong Zhang,Zhanbo Wang,Yan Zhang,Chunmei Cao,Ping-Wu Zhang,Shu-Juan Lu,Xiao-Mo Li,Quan Yu,Xiaofeng Zheng,Quan Du,George R. Uhl,Qing-Rong Liu,Liping Wei
#t2010
#cPLoS Computational Biology
#index3373170
#% 
#!
  
#*Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage.
#@Jingchun Zhu,J. Zachary Sanborn,Mark Diekhans,Craig B. Lowe,Tom H. Pringle,David Haussler
#t2007
#cPLoS Computational Biology
#index3373103
#% 
#!
  
#*Structure Modeling of All Identified G Protein-Coupled Receptors in the Human Genome.
#@Yang Zhang,Mark E. DeVries,Jeffrey Skolnick
#t2006
#cPLoS Computational Biology
#index3373355
#% 
#!
  
#*First Principles Modeling of Nonlinear Incidence Rates in Seasonal Epidemics.
#@José M. Ponciano,Marcos A. Capistran
#t2011
#cPLoS Computational Biology
#index3373251
#% 
#!
  
#*Computational Fitness Landscape for All Gene-Order Permutations of an RNA Virus.
#@Kwang-il Lim,John Yin
#t2009
#cPLoS Computational Biology
#index3373150
#% 
#!
  
#*Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling.
#@Aurélien Naldi,Jorge Carneiro,Claudine Chaouiya,Denis Thieffry
#t2010
#cPLoS Computational Biology
#index3373307
#% 
#!
  
#*Two Birds with One Stone? Possible Dual-Targeting H1N1 Inhibitors from Traditional Chinese Medicine.
#@Su-Sen Chang,Hung-Jin Huang,Calvin Yu-Chian Chen
#t2011
#cPLoS Computational Biology
#index3373316
#% 
#!
  
#*The Effect of Heterogeneity on Invasion in Spatial Epidemics: From Theory to Experimental Evidence in a Model System.
#@Franco M. Neri,Anne Bates,Winnie S. Füchtbauer,Francisco J. Pérez-Reche,Sergei N. Taraskin,Wilfred Otten,Douglas J. Bailey,Christopher A. Gilligan
#t2011
#cPLoS Computational Biology
#index3373157
#% 
#!
  
#*Dimensionality and Dynamics in the Behavior of .
#@Greg J. Stephens,Bethany Johnson-Kerner,William Bialek,William S. Ryu
#t2008
#cPLoS Computational Biology
#index3373246
#% 
#!
  
#*Evidence of Influence of Genomic DNA Sequence on Human X Chromosome Inactivation.
#@Zhong Wang,Huntington F. Willard,Sayan Mukherjee,Terrence S. Furey
#t2006
#cPLoS Computational Biology
#index3373232
#% 
#!
  
#*Genomic Sequence Is Highly Predictive of Local Nucleosome Depletion.
#@Guo-Cheng Yuan,Jun S. Liu
#t2008
#cPLoS Computational Biology
#index3373089
#% 
#!
  
#*The Long and Thorny Road to Publication in Quality Journals.
#@Thomas C. Erren
#t2007
#cPLoS Computational Biology
#index3373066
#% 
#!
  
#*Folding Very Short Peptides Using Molecular Dynamics.
#@Bosco K. Ho,Ken A. Dill
#t2006
#cPLoS Computational Biology
#index3373040
#% 
#!
  
#*A Computational Approach to Finding Novel Targets for Existing Drugs.
#@Yvonne Y. Li,Jianghong An,Steven J. M. Jones
#t2011
#cPLoS Computational Biology
#index3372915
#% 
#!
  
#*Neurogenesis Drives Stimulus Decorrelation in a Model of the Olfactory Bulb.
#@Siu-Fai Chow,Stuart D. Wick,Hermann Riecke
#t2012
#cPLoS Computational Biology
#index3373184
#% 
#!
  
#*Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples.
#@James Robert White,Niranjan Nagarajan,Mihai Pop
#t2009
#cPLoS Computational Biology
#index3372997
#% 
#!
  
#*Does the Potential for Chaos Constrain the Embryonic Cell-Cycle Oscillator?
#@R. Scott McIsaac,Kerwyn Casey Huang,Anirvan Sengupta,Ned S. Wingreen
#t2011
#cPLoS Computational Biology
#index3373299
#% 
#!
  
#*A Model of Brain Circulation and Metabolism: NIRS Signal Changes during Physiological Challenges.
#@Murad Banaji,Alfred Mallet,Clare E. Elwell,Peter Nicholls,Chris E. Cooper
#t2008
#cPLoS Computational Biology
#index3373069
#% 
#!
  
#*Intrinsically Disordered Proteins Display No Preference for Chaperone Binding In Vivo.
#@Hédi Hegyi,Peter Tompa
#t2008
#cPLoS Computational Biology
#index3372965
#% 
#!
  
#*Correction: Emergence of Protein Fold Families through Rational Design.
#@Feng Ding,Nikolay V. Dokholyan
#t2006
#cPLoS Computational Biology
#index3373343
#% 
#!
  
#*A Computational and Experimental Study of the Regulatory Mechanisms of the Complement System.
#@Bing Liu,Jing Zhang,Pei Yi Tan,David Hsu,Anna M. Blom,Benjamin Leong,Sunil Sethi,Bow Ho,Jeak Ling Ding,P. S. Thiagarajan
#t2011
#cPLoS Computational Biology
#index3373279
#% 
#!
  
#*Analysis and Computational Dissection of Molecular Signature Multiplicity.
#@Alexander R. Statnikov,Constantin F. Aliferis
#t2010
#cPLoS Computational Biology
#index3372905
#% 
#!
  
#*A Primer on Learning in Bayesian Networks for Computational Biology.
#@Chris J. Needham,James R. Bradford,Andrew J. Bulpitt,David R. Westhead
#t2007
#cPLoS Computational Biology
#index3373071
#% 
#!
  
#*Systems Analysis of Bioenergetics and Growth of the Extreme Halophile .
#@Orland R. Gonzalez,Susanne Gronau,Friedhelm Pfeiffer,Eduardo Mendoza,Ralf Zimmer,Dieter Oesterhelt
#t2009
#cPLoS Computational Biology
#index3372896
#% 
#!
  
#*Integrating Statistical Predictions and Experimental Verifications for Enhancing Protein-Chemical Interaction Predictions in Virtual Screening.
#@Nobuyoshi Nagamine,Takayuki Shirakawa,Yusuke Minato,Kentaro Torii,Hiroki Kobayashi,Masaya Imoto,Yasubumi Sakakibara
#t2009
#cPLoS Computational Biology
#index3373072
#% 
#!
  
#*To Lyse or Not to Lyse: Transient-Mediated Stochastic Fate Determination in Cells Infected by Bacteriophages.
#@Richard I. Joh,Joshua S. Weitz
#t2011
#cPLoS Computational Biology
#index3372886
#% 
#!
  
#*Conformational Changes in Protein Loops and Helices Induced by Post-Translational Phosphorylation.
#@Eli S. Groban,Arjun Narayanan,Matthew P. Jacobson
#t2006
#cPLoS Computational Biology
#index3373053
#% 
#!
  
#*Conformational Control of the Binding of the Transactivation Domain of the MLL Protein and c-Myb to the KIX Domain of CREB.
#@Elif Nihal Korkmaz,Ruth Nussinov,Türkan Haliloglu
#t2012
#cPLoS Computational Biology
#index3372914
#% 
#!
  
#*Integrated Mechanisms of Anticipation and Rate-of-Change Computations in Cortical Circuits.
#@Gabriel D. Puccini,Maria V. Sanchez-Vives,Albert Compte
#t2007
#cPLoS Computational Biology
#index3373240
#% 
#!
  
#*Adventures in Semantic Publishing: Exemplar Semantic Enhancements of a Research Article.
#@David M. Shotton,Katie Portwin,Graham Klyne,Alistair Miles
#t2009
#cPLoS Computational Biology
#index3372902
#% 
#!
  
#*Subcellular Location of PKA Controls Striatal Plasticity: Stochastic Simulations in Spiny Dendrites.
#@Rodrigo Freire Oliveira,Myungsook Kim,Kim T. Blackwell
#t2012
#cPLoS Computational Biology
#index3373197
#% 
#!
  
#*A High-Throughput Screening Approach to Discovering Good Forms of Biologically Inspired Visual Representation.
#@Nicolas Pinto,David Doukhan,James J. DiCarlo,David D. Cox
#t2009
#cPLoS Computational Biology
#index3373104
#% 
#!
  
#*Multilevel Selection in Models of Prebiotic Evolution II: A Direct Comparison of Compartmentalization and Spatial Self-Organization.
#@Nobuto Takeuchi,Paulien Hogeweg
#t2009
#cPLoS Computational Biology
#index3373122
#% 
#!
  
#*Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families.
#@Guohui Ding,Jiuhong Kang,Qi Liu,Tieliu Shi,Gang Pei,Yixue Li
#t2006
#cPLoS Computational Biology
#index3373006
#% 
#!
  
#*Predicting Important Residues and Interaction Pathways in Proteins Using Gaussian Network Model: Binding and Stability of HLA Proteins.
#@Turkan Haliloglu,Ahmet Gul,Burak Erman
#t2010
#cPLoS Computational Biology
#index3373338
#% 
#!
  
#*Optimal Experimental Design for Parameter Estimation of a Cell Signaling Model.
#@Samuel Bandara,Johannes P. Schlöder,Roland Eils,Hans Georg Bock,Tobias Meyer
#t2009
#cPLoS Computational Biology
#index3373276
#% 
#!
  
#*Probabilistic Phylogenetic Inference with Insertions and Deletions.
#@Elena Rivas,Sean R. Eddy
#t2008
#cPLoS Computational Biology
#index3373094
#% 
#!
  
#*Experimental and Computational Analysis of Polyglutamine-Mediated Cytotoxicity.
#@Matthew Y. Tang,Carole J. Proctor,John Woulfe,Douglas A. Gray
#t2010
#cPLoS Computational Biology
#index3372924
#% 
#!
  
#*Human miRNA Precursors with Box H/ACA snoRNA Features.
#@Michelle S. Scott,Fabio Avolio,Motoharu Ono,Angus I. Lamond,Geoffrey J. Barton
#t2009
#cPLoS Computational Biology
#index3373265
#% 
#!
  
#*STDP in a Bistable Synapse Model Based on CaMKII and Associated Signaling Pathways.
#@Michael Graupner,Nicolas Brunel
#t2007
#cPLoS Computational Biology
#index3373294
#% 
#!
  
#*A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family.
#@Gregory D. Friedland,Nils-Alexander Lakomek,Christian Griesinger,Jens Meiler,Tanja Kortemme
#t2009
#cPLoS Computational Biology
#index3373035
#% 
#!
  
#*Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan.
#@Morten Nielsen,Claus Lundegaard,Thomas Blicher,Bjoern Peters,Alessandro Sette,Sune Justesen,Søren Buus,Ole Lund
#t2008
#cPLoS Computational Biology
#index3373329
#% 
#!
  
#*Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes.
#@Mark Yandell,Chris Mungall,Chris Smith,Simon Prochnik,Joshua S. Kaminker,George Hartzell,Suzanna Lewis,Gerald M. Rubin
#t2006
#cPLoS Computational Biology
#index3373324
#% 
#!
  
#*Representational Switching by Dynamical Reorganization of Attractor Structure in a Network Model of the Prefrontal Cortex.
#@Yuichi Katori,Kazuhiro Sakamoto,Naohiro Saito,Jun Tanji,Hajime Mushiake,Kazuyuki Aihara
#t2011
#cPLoS Computational Biology
#index3373262
#% 
#!
  
#*Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNA-Seq.
#@Augix Guohua Xu,Liu He,Zhongshan Li,Ying Xu,Mingfeng Li,Xing Fu,Zheng Yan,Yuan Yuan,Corinna Menzel,Na Li,Mehmet Somel,Hao Hu,Wei Chen,Svante Pääbo,Philipp Khaitovich
#t2010
#cPLoS Computational Biology
#index3372891
#% 
#!
  
#*Attracting Dynamics of Frontal Cortex Ensembles during Memory-Guided Decision-Making.
#@Emili Balaguer-Ballester,Christopher C. Lapish,Jeremy K. Seamans,Daniel Durstewitz
#t2011
#cPLoS Computational Biology
#index3373300
#% 
#!
  
#*A Reaction-Diffusion Model of Human Brain Development.
#@Julien Lefevre,Jean-François Mangin
#t2010
#cPLoS Computational Biology
#index3373243
#% 
#!
  
#*Evolution of Taxis Responses in Virtual Bacteria: Non-Adaptive Dynamics.
#@Richard A. Goldstein,Orkun S. Soyer
#t2008
#cPLoS Computational Biology
#index3372958
#% 
#!
  
#*The Need for Centralization of Computational Biology Resources.
#@Fran Lewitter,Michael Rebhan,Brent Richter,David Sexton
#t2009
#cPLoS Computational Biology
#index3372980
#% 
#!
  
#*The Transcriptional Regulator CBP Has Defined Spatial Associations within Interphase Nuclei.
#@Kirk J. McManus,David A. Stephens,Niall M. Adams,Suhail A. Islam,Paul S. Freemont,Michael J. Hendzel
#t2006
#cPLoS Computational Biology
#index3373254
#% 
#!
  
#*Ultra-Fast Evaluation of Protein Energies Directly from Sequence.
#@Gevorg Grigoryan,Fei Zhou,Steve R. Lustig,Gerbrand Ceder,Dane Morgan,Amy E. Keating
#t2006
#cPLoS Computational Biology
#index3373198
#% 
#!
  
#*Is My Network Module Preserved and Reproducible?
#@Peter Langfelder,Rui Luo,Michael C. Oldham,Steve Horvath
#t2011
#cPLoS Computational Biology
#index3373226
#% 
#!
  
#*ISMB 2008 Toronto.
#@Michal Linial,Jill P. Mesirov,B. J. Morrison McKay,Burkhard Rost
#t2008
#cPLoS Computational Biology
#index3373363
#% 
#!
  
#*Temporal Sensitivity of Protein Kinase A Activation in Late-Phase Long Term Potentiation.
#@Myungsook Kim,Ted Huang,Ted Abel,Kim T. Blackwell
#t2010
#cPLoS Computational Biology
#index3373190
#% 
#!
  
#*Expression-Guided In Silico Evaluation of Candidate Regulatory Codes for Muscle Founder Cells.
#@Anthony A. Philippakis,Brian W. Busser,Stephen S. Gisselbrecht,Fangxue Sherry He,Beatriz Estrada,Alan M. Michelson,Martha L. Bulyk
#t2006
#cPLoS Computational Biology
#index3372983
#% 
#!
  
#*Functional Impact of Missense Variants in BRCA1 Predicted by Supervised Learning.
#@Rachel Karchin,Alvaro N. A. Monteiro,Sean V. Tavtigian,Marcelo A. Carvalho,Andrej Sali
#t2007
#cPLoS Computational Biology
#index3373016
#% 
#!
  
#*Collective Animal Behavior from Bayesian Estimation and Probability Matching.
#@Alfonso Pérez-Escudero,Gonzalo G. de Polavieja
#t2011
#cPLoS Computational Biology
#index3373158
#% 
#!
  
#*Spatial and Topological Organization of DNA Chains Induced by Gene Co-localization.
#@Ivan Junier,Olivier Martin,François Képès
#t2010
#cPLoS Computational Biology
#index3372977
#% 
#!
  
#*"I Look in Your Eyes, Honey": Internal Face Features Induce Spatial Frequency Preference for Human Face Processing.
#@Matthias S. Keil
#t2009
#cPLoS Computational Biology
#index3372885
#% 
#!
  
#*Alternative Splicing Events Identified in Human Embryonic Stem Cells and Neural Progenitors.
#@Gene W. Yeo,Xiangdong Xu,Tiffany Y. Liang,Alysson R. Muotri,Christian T. Carson,Nicole G. Coufal,Fred H. Gage
#t2007
#cPLoS Computational Biology
#index3372943
#% 
#!
  
#*Retracing Micro-Epidemics of Chagas Disease Using Epicenter Regression.
#@Michael Z. Levy,Dylan S. Small,Daril A. Vilhena,Natalie M. Bowman,Vivian Kawai,Juan G. Cornejo del Carpio,Eleazar Cordova-Benzaquen,Robert H. Gilman,Caryn Bern,Joshua B. Plotkin
#t2011
#cPLoS Computational Biology
#index3373113
#% 
#!
  
#*Loss of Genetic Redundancy in Reductive Genome Evolution.
#@André G. Mendonça,Renato J. Alves,José B. Pereira-Leal
#t2011
#cPLoS Computational Biology
#index3373293
#% 
#!
  
#*MCAM: Multiple Clustering Analysis Methodology for Deriving Hypotheses and Insights from High-Throughput Proteomic Datasets.
#@Kristen M. Naegle,Roy E. Welsch,Michael B. Yaffe,Forest M. White,Douglas A. Lauffenburger
#t2011
#cPLoS Computational Biology
#index3372936
#% 
#!
  
#*Social Interactions in Myxobacterial Swarming.
#@Yilin Wu,Yi Jiang,Dale Kaiser,Mark S. Alber
#t2007
#cPLoS Computational Biology
#index3373349
#% 
#!
  
#*Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect.
#@Tomer Shlomi,Tomer Benyamini,Eyal Gottlieb,Roded Sharan,Eytan Ruppin
#t2011
#cPLoS Computational Biology
#index3373310
#% 
#!
  
#*RNA-Seq Mapping and Detection of Gene Fusions with a Suffix Array Algorithm.
#@Onur Sakarya,Heinz Breu,Milan Radovich,Yongzhi Chen,Yulei N. Wang,Catalin Barbacioru,Sowmi Utiramerur,Penn P. Whitley,Joel P. Brockman,Paolo Vatta,Zheng Zhang,Liviu Popescu,Matthew W. Muller,Vidya Kudlingar,Nriti Garg,Chieh-Yuan Li,Benjamin S. Kong,John P. Bodeau,Robert C. Nutter,Jian Gu,Kelli S. Bramlett,Jeffrey K. Ichikawa,Fiona C. Hyland,Asim S. Siddiqui
#t2012
#cPLoS Computational Biology
#index3372888
#% 
#!
  
#*Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data.
#@Tom C. Freeman,Leon Goldovsky,Markus Brosch,Stijn van Dongen,Pierre Mazière,Russell J. Grocock,Shiri Freilich,Janet Thornton,Anton J. Enright
#t2007
#cPLoS Computational Biology
#index3373149
#% 
#!
  
#*Interactions between Connected Half-Sarcomeres Produce Emergent Mechanical Behavior in a Mathematical Model of Muscle.
#@Kenneth S. Campbell
#t2009
#cPLoS Computational Biology
#index3373211
#% 
#!
  
#*Prediction by Promoter Logic in Bacterial Quorum Sensing.
#@Navneet Rai,Rajat Anand,Krishna Ramkumar,Varun Sreenivasan,Sugat Dabholkar,K. V. Venkatesh,Mukund Thattai
#t2012
#cPLoS Computational Biology
#index3373346
#% 
#!
  
#*Exploring the Free Energy Landscape: From Dynamics to Networks and Back.
#@Diego Prada-Gracia,Jesús Gómez-Gardeñes,Pablo Echenique,Fernando Falo
#t2009
#cPLoS Computational Biology
#index3372907
#% 
#!
  
#*Sampling Realistic Protein Conformations Using Local Structural Bias.
#@Thomas Hamelryck,John T. Kent,Anders Krogh
#t2006
#cPLoS Computational Biology
#index3372999
#% 
#!
  
#*How Molecular Motors Are Arranged on a Cargo Is Important for Vesicular Transport.
#@Robert P. Erickson,Zhiyuan Jia,Steven P. Gross,Clare C. Yu
#t2011
#cPLoS Computational Biology
#index3373212
#% 
#!
  
#*Elucidation of the Recognition Dynamics of Ubiquitin.
#@Dong Long,Rafael Brüschweiler
#t2011
#cPLoS Computational Biology
#index3373229
#% 
#!
  
#*Disentangling the Roles of Approach, Activation and Valence in Instrumental and Pavlovian Responding.
#@Quentin J. M. Huys,Roshan Cools,Martin Gölzer,Eva Friedel,Andreas Heinz,Raymond J. Dolan,Peter Dayan
#t2011
#cPLoS Computational Biology
#index3373335
#% 
#!
  
#*Diminished Self-Chaperoning Activity of the ΔF508 Mutant of CFTR Results in Protein Misfolding.
#@Adrian W. R. Serohijos,Tamás Hegedüs,John R. Riordan,Nikolay V. Dokholyan
#t2008
#cPLoS Computational Biology
#index3372874
#% 
#!
  
#*Isolation-by-Distance and Outbreeding Depression Are Sufficient to Drive Parapatric Speciation in the Absence of Environmental Influences.
#@Guy A. Hoelzer,Rich Drewes,Jeffrey Meier,René Doursat
#t2008
#cPLoS Computational Biology
#index3372928
#% 
#!
  
#*Ten Simple Rules for a Good Poster Presentation.
#@Thomas C. Erren,Philip E. Bourne
#t2007
#cPLoS Computational Biology
#index3373130
#% 
#!
  
#*A Cell-based Computational Modeling Approach for Developing Site-Directed Molecular Probes.
#@Jing-yu Yu,Nan Zheng,Gerta Mane,Kyoung Ah Min,Juan P. Hinestroza,Huaning Zhu,Kathleen A. Stringer,Gus R. Rosania
#t2012
#cPLoS Computational Biology
#index3373313
#% 
#!
  
#*Protein Molecular Function Prediction by Bayesian Phylogenomics.
#@Barbara E. Engelhardt,Michael I. Jordan,Kathryn E. Muratore,Steven E. Brenner
#t2005
#cPLoS Computational Biology
#index3373076
#% 
#!
  
#*A New Method to Reconstruct Recombination Events at a Genomic Scale.
#@Marta Melé,Asif Javed,Marc Pybus,Francesc Calafell,Laxmi Parida,Jaume Bertranpetit
#t2010
#cPLoS Computational Biology
#index3372994
#% 
#!
  
#*Increased Vulnerability of Human Ventricle to Re-entrant Excitation in hERG-linked Variant 1 Short QT Syndrome.
#@Ismail Adeniran,Mark J. McPate,Harry J. Witchel,Jules C. Hancox,Henggui Zhang
#t2011
#cPLoS Computational Biology
#index3373162
#% 
#!
  
#*MDCK Cystogenesis Driven by Cell Stabilization within Computational Analogues.
#@Jesse Engelberg,Anirban Datta,Keith E. Mostov,C. Anthony Hunt
#t2011
#cPLoS Computational Biology
#index3373321
#% 
#!
  
#*Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies.
#@Nicoló Fusi,Oliver Stegle,Neil D. Lawrence
#t2012
#cPLoS Computational Biology
#index3373257
#% 
#!
  
#*Brightness and Darkness as Perceptual Dimensions.
#@Tony Vladusich,Marcel P. Lucassen,Frans W. Cornelissen
#t2007
#cPLoS Computational Biology
#index3373214
#% 
#!
  
#*Towards Reproducible Descriptions of Neuronal Network Models.
#@Eilen Nordlie,Marc-Oliver Gewaltig,Hans Ekkehard Plesser
#t2009
#cPLoS Computational Biology
#index3372929
#% 
#!
  
#*Conformation Regulation of the X Chromosome Inactivation Center: A Model.
#@Antonio Scialdone,Ilaria Cataudella,Mariano Barbieri,Antonella Prisco,Mario Nicodemi
#t2011
#cPLoS Computational Biology
#index3373336
#% 
#!
  
#*Evolutionary Game Theory and Social Learning Can Determine How Vaccine Scares Unfold.
#@Chris T. Bauch,Samit Bhattacharyya
#t2012
#cPLoS Computational Biology
#index3373112
#% 
#!
  
#*Semantic Similarity for Automatic Classification of Chemical Compounds.
#@João D. Ferreira,Francisco M. Couto
#t2010
#cPLoS Computational Biology
#index3372871
#% 
#!
  
#*Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes.
#@Jon Bohlin,Eystein Skjerve,David Ussery
#t2008
#cPLoS Computational Biology
#index3372865
#% 
#!
  
#*Making Informed Choices about Microarray Data Analysis.
#@Mark Reimers
#t2010
#cPLoS Computational Biology
#index3373205
#% 
#!
  
#*Molecular Simulations of Cotranslational Protein Folding: Fragment Stabilities, Folding Cooperativity, and Trapping in the Ribosome.
#@Adrian H. Elcock
#t2006
#cPLoS Computational Biology
#index3373119
#% 
#!
  
#*Changes in Lysozyme Flexibility upon Mutation Are Frequent, Large and Long-Ranged.
#@Deeptak Verma,Donald J. Jacobs,Dennis R. Livesay
#t2012
#cPLoS Computational Biology
#index3372944
#% 
#!
  
#*Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor.
#@Michal J. Okoniewski,Crispin J. Miller
#t2008
#cPLoS Computational Biology
#index3372899
#% 
#!
  
#*Generation of Diverse Biological Forms through Combinatorial Interactions between Tissue Polarity and Growth.
#@Richard Kennaway,Enrico Coen,Amelia Green,Andrew Bangham
#t2011
#cPLoS Computational Biology
#index3373370
#% 
#!
  
#*Computational Biology in Brazil.
#@Goran Neshich
#t2007
#cPLoS Computational Biology
#index3373019
#% 
#!
  
#*"Guilt by Association" Is the Exception Rather Than the Rule in Gene Networks.
#@Jesse Gillis,Paul Pavlidis
#t2012
#cPLoS Computational Biology
#index3373169
#% 
#!
  
#*Detecting Emerging Transmissibility of Avian Influenza Virus in Human Households.
#@Michiel van Boven,Marion Koopmans,Mirna Du Ry van Beest Holle,Adam Meijer,Don Klinkenberg,Christl A. Donnelly,Hans Heesterbeek
#t2007
#cPLoS Computational Biology
#index3372852
#% 
#!
  
#*Ten Simple Rules for Chairing a Scientific Session.
#@Alex Bateman,Philip E. Bourne
#t2009
#cPLoS Computational Biology
#index3372922
#% 
#!
  
#*Protein Family Expansions and Biological Complexity.
#@Christine Vogel,Cyrus Chothia
#t2006
#cPLoS Computational Biology
#index3372927
#% 
#!
  
#*Recombination Rate and Selection Strength in HIV Intra-patient Evolution.
#@Richard A. Neher,Thomas Leitner
#t2010
#cPLoS Computational Biology
#index3373332
#% 
#!
  
#*Non-Bulk-Like Solvent Behavior in the Ribosome Exit Tunnel.
#@Del Lucent,Christopher D. Snow,Colin Echeverría Aitken,Vijay S. Pande
#t2010
#cPLoS Computational Biology
#index3373155
#% 
#!
  
#*Accurate Distinction of Pathogenic from Benign CNVs in Mental Retardation.
#@Jayne Y. Hehir-Kwa,Nienke Wieskamp,Caleb Webber,Rolph Pfundt,Han G. Brunner,Christian Gilissen,Bert B. A. de Vries,Chris P. Ponting,Joris A. Veltman
#t2010
#cPLoS Computational Biology
#index3373106
#% 
#!
  
#*Frequency-Invariant Representation of Interaural Time Differences in Mammals.
#@Hannes Lüling,Ida Siveke,Benedikt Grothe,Christian Leibold
#t2011
#cPLoS Computational Biology
#index3373075
#% 
#!
  
#*A Mathematical Framework for the Selection of an Optimal Set of Peptides for Epitope-Based Vaccines.
#@Nora C. Toussaint,Pierre Dönnes,Oliver Kohlbacher
#t2008
#cPLoS Computational Biology
#index3373077
#% 
#!
  
#*Correlation of Influenza Virus Excess Mortality with Antigenic Variation: Application to Rapid Estimation of Influenza Mortality Burden.
#@Aiping Wu,Yousong Peng,Xiangjun Du,Yuelong Shu,Taijiao Jiang
#t2010
#cPLoS Computational Biology
#index3373061
#% 
#!
  
#*Dynamic Correlation between Intrahost HIV-1 Quasispecies Evolution and Disease Progression.
#@Ha Youn Lee,Alan S. Perelson,Su-Chan Park,Thomas Leitner
#t2008
#cPLoS Computational Biology
#index3373014
#% 
#!
  
#*Detecting Key Structural Features within Highly Recombined Genes.
#@John E. Wertz,Karen F. McGregor,Debra E. Bessen
#t2007
#cPLoS Computational Biology
#index3373341
#% 
#!
  
#*Transition from Persistent to Anti-Persistent Correlations in Postural Sway Indicates Velocity-Based Control.
#@Didier Delignières,Kjerstin Torre,Pierre-Louis Bernard
#t2011
#cPLoS Computational Biology
#index3373086
#% 
#!
  
#*Ten Simple Rules for Organizing a Virtual Conference - Anywhere.
#@Nelson N. Gichora,Segun A. Fatumo,Mtakai V. Ngara,Noura Chelbat,Kavisha Ramdayal,Kenneth B. Opap,Geoffrey H. Siwo,Marion O. Adebiyi,Amina El Gonnouni,Denis Zofou,Amal A. M. Maurady,Ezekiel F. Adebiyi,Etienne P. de Villiers,Daniel K. Masiga,Jeffrey W. Bizzaro,Prashanth Suravajhala,Sheila C. Ommeh,Winston Hide
#t2010
#cPLoS Computational Biology
#index3372964
#% 
#!
  
#*Refining Protein Subcellular Localization.
#@Michelle S. Scott,Sara J. Calafell,David Y. Thomas,Michael T. Hallett
#t2005
#cPLoS Computational Biology
#index3373356
#% 
#!
  
#*Residual Structures, Conformational Fluctuations, and Electrostatic Interactions in the Synergistic Folding of Two Intrinsically Disordered Proteins.
#@Weihong Zhang,Debabani Ganguly,Jianhan Chen
#t2012
#cPLoS Computational Biology
#index3373148
#% 
#!
  
#*Computational Analysis of Viscoelastic Properties of Crosslinked Actin Networks.
#@Taeyoon Kim,Wonmuk Hwang,Hyungsuk Lee,Roger D. Kamm
#t2009
#cPLoS Computational Biology
#index3373239
#% 
#!
  
#*The Emergence and Fate of Horizontally Acquired Genes in .
#@Mark W. J. van Passel,Pradeep Reddy Marri,Howard Ochman
#t2008
#cPLoS Computational Biology
#index3372935
#% 
#!
  
#*PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data.
#@Thomas J. Sharpton,Samantha J. Riesenfeld,Steven W. Kembel,Joshua Ladau,James P. O'Dwyer,Jessica L. Green,Jonathan A. Eisen,Katherine S. Pollard
#t2011
#cPLoS Computational Biology
#index3373362
#% 
#!
  
#*Modeling Brain Resonance Phenomena Using a Neural Mass Model.
#@Andreas Spiegler,Thomas R. Knösche,Karin Schwab,Jens Haueisen,Fatihcan M. Atay
#t2011
#cPLoS Computational Biology
#index3373195
#% 
#!
  
#*Metabolic Regulation in Progression to Autoimmune Diabetes.
#@Marko Sysi-Aho,Andrey Ermolov,Peddinti V. Gopalacharyulu,Abhishek Tripathi,Tuulikki Seppänen-Laakso,Johanna Maukonen,Ismo Mattila,Suvi T. Ruohonen,Laura Vähätalo,Laxman Yetukuri,Taina Härkönen,Erno Lindfors,Janne Nikkilä,Jorma Ilonen,Olli Simell,Maria Saarela,Mikael Knip,Samuel Kaski,Eriika Savontaus,Matej Oresic
#t2011
#cPLoS Computational Biology
#index3373033
#% 
#!
  
#*Interspecies Translation of Disease Networks Increases Robustness and Predictive Accuracy.
#@Seyed Yahya Anvar,Allan Tucker,Veronica Vinciotti,Andrea Venema,Gert-Jan B. van Ommen,Silvere M. van der Maarel,Vered Raz,Peter A. C. 't Hoen
#t2011
#cPLoS Computational Biology
#index3373159
#% 
#!
  
#*Branch Mode Selection during Early Lung Development.
#@Denis Menshykau,Conradin Kraemer,Dagmar Iber
#t2012
#cPLoS Computational Biology
#index3373285
#% 
#!
  
#*Stochastic Delay Accelerates Signaling in Gene Networks.
#@Kresimir Josic,José Manuel López,William Ott,LieJune Shiau,Matthew R. Bennett
#t2011
#cPLoS Computational Biology
#index3372880
#% 
#!
  
#*Near-Native Protein Loop Sampling Using Nonparametric Density Estimation Accommodating Sparcity.
#@Hyun Joo,Archana G. Chavan,Ryan Day,Kristin P. Lennox,Paul Sukhanov,David B. Dahl,Marina Vannucci,Jerry Tsai
#t2011
#cPLoS Computational Biology
#index3373187
#% 
#!
  
#*A Mathematical Framework for Estimating Pathogen Transmission Fitness and Inoculum Size Using Data from a Competitive Mixtures Animal Model.
#@James M. McCaw,Nimalan Arinaminpathy,Aeron C. Hurt,Jodie McVernon,Angela R. McLean
#t2011
#cPLoS Computational Biology
#index3373280
#% 
#!
  
#*Inference of Disease-Related Molecular Logic from Systems-Based Microarray Analysis.
#@Vinay Varadan,Dimitris Anastassiou
#t2006
#cPLoS Computational Biology
#index3372972
#% 
#!
  
#*Replication Pauses of the Wild-Type and Mutant Mitochondrial DNA Polymerase Gamma: A Simulation Study.
#@Zhuo Song,Yang Cao,David C. Samuels
#t2011
#cPLoS Computational Biology
#index3372866
#% 
#!
  
#*Implications of Behavioral Architecture for the Evolution of Self-Organized Division of Labor.
#@A. Duarte,E. Scholtens,F. J. Weissing
#t2012
#cPLoS Computational Biology
#index3373168
#% 
#!
  
#*Optimizing Experimental Design for Comparing Models of Brain Function.
#@Jean Daunizeau,Kerstin Preuschoff,Karl J. Friston,Klaas E. Stephan
#t2011
#cPLoS Computational Biology
#index3373000
#% 
#!
  
#*Regulatory Control and the Costs and Benefits of Biochemical Noise.
#@Sorin Tanase-Nicola,Pieter Rein ten Wolde
#t2008
#cPLoS Computational Biology
#index3372957
#% 
#!
  
#*Biophysical Basis for Three Distinct Dynamical Mechanisms of Action Potential Initiation.
#@Steven A. Prescott,Yves De Koninck,Terrence J. Sejnowski
#t2008
#cPLoS Computational Biology
#index3373296
#% 
#!
  
#*Using Structure to Explore the Sequence Alignment Space of Remote Homologs.
#@Andrew Kuziemko,Barry Honig,Donald Petrey
#t2011
#cPLoS Computational Biology
#index3373105
#% 
#!
  
#*Bistable Perception Modeled as Competing Stochastic Integrations at Two Levels.
#@Guido Gigante,Maurizio Mattia,Jochen Braun,Paolo Del Giudice
#t2009
#cPLoS Computational Biology
#index3373234
#% 
#!
  
#*Estimating the Continuous-Time Dynamics of Energy and Fat Metabolism in Mice.
#@Juen Guo,Kevin D. Hall
#t2009
#cPLoS Computational Biology
#index3372985
#% 
#!
  
#*De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference.
#@Jens Keilwagen,Jan Grau,Ivan A. Paponov,Stefan Posch,Marc Strickert,Ivo Grosse
#t2011
#cPLoS Computational Biology
#index3373305
#% 
#!
  
#*Forcing Versus Feedback: Epidemic Malaria and Monsoon Rains in Northwest India.
#@Karina Laneri,Anindya Bhadra,Edward L. Ionides,Menno Bouma,Ramesh C. Dhiman,Rajpal S. Yadav,Mercedes Pascual
#t2010
#cPLoS Computational Biology
#index3373287
#% 
#!
  
#*Fuzzy Logic Analysis of Kinase Pathway Crosstalk in TNF/EGF/Insulin-Induced Signaling.
#@Bree B. Aldridge,Julio Saez-Rodriguez,Jeremy Muhlich,Peter K. Sorger,Douglas A. Lauffenburger
#t2009
#cPLoS Computational Biology
#index3373036
#% 
#!
  
#*Role of Hsp70 ATPase Domain Intrinsic Dynamics and Sequence Evolution in Enabling its Functional Interactions with NEFs.
#@Ying Liu,Lila M. Gierasch,Ivet Bahar
#t2010
#cPLoS Computational Biology
#index3373092
#% 
#!
  
#*Large-Scale Analysis of Network Bistability for Human Cancers.
#@Tetsuya Shiraishi,Shinako Matsuyama,Hiroaki Kitano
#t2010
#cPLoS Computational Biology
#index3373021
#% 
#!
  
#*Computational and Statistical Analysis of Protein Mass Spectrometry Data.
#@William Stafford Noble,Michael J. MacCoss
#t2012
#cPLoS Computational Biology
#index3373139
#% 
#!
  
#*Transient Cognitive Dynamics, Metastability, and Decision Making.
#@Mikhail I. Rabinovich,Ramón Huerta,Pablo Varona,Valentin S. Afraimovich
#t2008
#cPLoS Computational Biology
#index3373047
#% 
#!
  
#*A Computational Clonal Analysis of the Developing Mouse Limb Bud.
#@Luciano Marcon,Carlos G. Arqués,Miguel S. Torres,James Sharpe
#t2011
#cPLoS Computational Biology
#index3373127
#% 
#!
  
#*Learning a Weighted Sequence Model of the Nucleosome Core and Linker Yields More Accurate Predictions in and .
#@Sheila M. Reynolds,Jeff A. Bilmes,William Stafford Noble
#t2010
#cPLoS Computational Biology
#index3373297
#% 
#!
  
#*Patient Referral Patterns and the Spread of Hospital-Acquired Infections through National Health Care Networks.
#@Tjibbe Donker,Jacco Wallinga,Hajo Grundmann
#t2010
#cPLoS Computational Biology
#index3373213
#% 
#!
  
#*Conditions for the Evolution of Gene Clusters in Bacterial Genomes.
#@Sara Ballouz,Andrew R. Francis,Ruiting Lan,Mark M. Tanaka
#t2010
#cPLoS Computational Biology
#index3372955
#% 
#!
  
#*A Hidden Markov Model for Single Particle Tracks Quantifies Dynamic Interactions between LFA-1 and the Actin Cytoskeleton.
#@Raibatak Das,Christopher W. Cairo,Daniel Coombs
#t2009
#cPLoS Computational Biology
#index3373244
#% 
#!
  
#*Evaluating Gene Expression Dynamics Using Pairwise RNA FISH Data.
#@Matthieu Wyart,David Botstein,Ned S. Wingreen
#t2010
#cPLoS Computational Biology
#index3373295
#% 
#!
  
#*Estimated Comparative Integration Hotspots Identify Different Behaviors of Retroviral Gene Transfer Vectors.
#@Alessandro Ambrosi,Ingrid K. Glad,Danilo Pellin,Claudia Cattoglio,Fulvio Mavilio,Clelia Di Serio,Arnoldo Frigessi
#t2011
#cPLoS Computational Biology
#index3373120
#% 
#!
  
#*Distinct Timing Mechanisms Produce Discrete and Continuous Movements.
#@Raoul Huys,Breanna E. Studenka,Nicole L. Rheaume,Howard N. Zelaznik,Viktor K. Jirsa
#t2008
#cPLoS Computational Biology
#index3373013
#% 
#!
  
#*Information Flow Analysis of Interactome Networks.
#@Patrycja Vasilyev Missiuro,Kesheng Liu,Lihua Zou,Brian C. Ross,Guoyan Zhao,Jun S. Liu,Hui Ge
#t2009
#cPLoS Computational Biology
#index3372963
#% 
#!
  
#*How Noisy Adaptation of Neurons Shapes Interspike Interval Histograms and Correlations.
#@Tilo Schwalger,Karin Fisch,Jan Benda,Benjamin Lindner
#t2010
#cPLoS Computational Biology
#index3372908
#% 
#!
  
#*Discovering the Phylodynamics of RNA Viruses.
#@Edward C. Holmes,Bryan T. Grenfell
#t2009
#cPLoS Computational Biology
#index3373204
#% 
#!
  
#*Sensitivity Analysis of Intracellular Signaling Pathway Kinetics Predicts Targets for Stem Cell Fate Control.
#@Alborz Mahdavi,Ryan E. Davey,Patrick Bhola,Ting Yin,Peter W. Zandstra
#t2007
#cPLoS Computational Biology
#index3373056
#% 
#!
  
#*Evolutionary Patterns in the Sequence and Structure of Transfer RNA: Early Origins of Archaea and Viruses.
#@Feng-Jie Sun,Gustavo Caetano-Anollés
#t2008
#cPLoS Computational Biology
#index3373206
#% 
#!
  
#*Indirect Reciprocity under Incomplete Observation.
#@Mitsuhiro Nakamura,Naoki Masuda
#t2011
#cPLoS Computational Biology
#index3373128
#% 
#!
  
#*Nucleotide Binding Switches the Information Flow in Ras GTPases.
#@Francesco Raimondi,Guillem Portella,Modesto Orozco,Francesca Fanelli
#t2011
#cPLoS Computational Biology
#index3373353
#% 
#!
  
#*Identification of Functional Subclasses in the DJ-1 Superfamily Proteins.
#@Ying Wei,Dagmar Ringe,Mark A. Wilson,Mary Jo Ondrechen
#t2007
#cPLoS Computational Biology
#index3373252
#% 
#!
  
#*Getting Started in Structural Phylogenomics.
#@Kimmen Sjölander
#t2010
#cPLoS Computational Biology
#index3373175
#% 
#!
  
#*Network Modeling Identifies Molecular Functions Targeted by miR-204 to Suppress Head and Neck Tumor Metastasis.
#@Younghee Lee,Xinan Yang,Yong Huang,Hanli Fan,Qingbei Zhang,Youngfei Wu,Jianrong Li,Rifat Hasina,Chao Cheng,Mark W. Lingen,Mark B. Gerstein,Ralph R. Weichselbaum,H. Rosie Xing,Yves A. Lussier
#t2010
#cPLoS Computational Biology
#index3373083
#% 
#!
  
#*HIV-1 Polymerase Inhibition by Nucleoside Analogs: Cellular- and Kinetic Parameters of Efficacy, Susceptibility and Resistance Selection.
#@Max von Kleist,Philipp Metzner,Roland Marquet,Christof Schütte
#t2012
#cPLoS Computational Biology
#index3372893
#% 
#!
  
#*Computational Analysis of Phosphopeptide Binding to the Polo-Box Domain of the Mitotic Kinase PLK1 Using Molecular Dynamics Simulation.
#@David J. Huggins,Grahame J. McKenzie,Daniel D. Robinson,Ana J. Narváez,Bryn Hardwick,Meredith Roberts-Thomson,Ashok R. Venkitaraman,Guy H. Grant,Mike C. Payne
#t2010
#cPLoS Computational Biology
#index3373111
#% 
#!
  
#*A Structural Model of the Pore-Forming Region of the Skeletal Muscle Ryanodine Receptor (RyR1).
#@Srinivas Ramachandran,Adrian W. R. Serohijos,Le Xu,Gerhard Meissner,Nikolay V. Dokholyan
#t2009
#cPLoS Computational Biology
#index3373331
#% 
#!
  
#*Conference Postcard from PSB 2011.
#@A. Murat Eren
#t2011
#cPLoS Computational Biology
#index3373114
#% 
#!
  
#*Transcription Factor Map Alignment of Promoter Regions.
#@Enrique Blanco,Xavier Messeguer,Temple F. Smith,Roderic Guigó
#t2006
#cPLoS Computational Biology
#index3373326
#% 
#!
  
#*Modularity and Dynamics of Cellular Networks.
#@Yuan (Alan) Qi,Hui Ge
#t2006
#cPLoS Computational Biology
#index3373027
#% 
#!
  
#*Encoding of Spatio-Temporal Input Characteristics by a CA1 Pyramidal Neuron Model.
#@Eleftheria Kyriaki Pissadaki,Kyriaki Sidiropoulou,Martin Reczko,Panayiota Poirazi
#t2010
#cPLoS Computational Biology
#index3372921
#% 
#!
  
#*Modeling Networks of Coupled Enzymatic Reactions Using the Total Quasi-Steady State Approximation.
#@Andrea Ciliberto,Fabrizio Capuani,John J. Tyson
#t2007
#cPLoS Computational Biology
#index3373156
#% 
#!
  
#*Phosphorylation of the Arp2 Subunit Relieves Auto-inhibitory Interactions for Arp2/3 Complex Activation.
#@Arjun Narayanan,Lawrence L. LeClaire III,Diane L. Barber,Matthew P. Jacobson
#t2011
#cPLoS Computational Biology
#index3373249
#% 
#!
  
#*Generative Embedding for Model-Based Classification of fMRI Data.
#@Kay Henning Brodersen,Thomas M. Schofield,Alexander P. Leff,Cheng Soon Ong,Ekaterina I. Lomakina,Joachim M. Buhmann,Klaas E. Stephan
#t2011
#cPLoS Computational Biology
#index3372975
#% 
#!
  
#*Maturation of GABAergic Inhibition Promotes Strengthening of Temporally Coherent Inputs among Convergent Pathways.
#@Sandra J. Kuhlman,Jiangteng Lu,Matthew S. Lazarus,Z. Josh Huang
#t2010
#cPLoS Computational Biology
#index3372991
#% 
#!
  
#*Cooperative Transition between Open and Closed Conformations in Potassium Channels.
#@Turkan Haliloglu,Nir Ben-Tal
#t2008
#cPLoS Computational Biology
#index3373224
#% 
#!
  
#*Using Multiple Microenvironments to Find Similar Ligand-Binding Sites: Application to Kinase Inhibitor Binding.
#@Tianyun Liu,Russ B. Altman
#t2011
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#*Quantitative Modeling of Chemotactic Motion in Environments Varying in Space and Time.
#@Lili Jiang,Qi Ouyang,Yuhai Tu
#t2010
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#*A Model for a Correlated Random Walk Based on the Ordered Extension of Pseudopodia.
#@Peter J. M. Van Haastert
#t2010
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#*Getting Started in Computational Immunology.
#@Steven H. Kleinstein
#t2008
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#*Determinants of Protein Abundance and Translation Efficiency in .
#@Tamir Tuller,Martin Kupiec,Eytan Ruppin
#t2007
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#*The Ascent of the Abundant: How Mutational Networks Constrain Evolution.
#@Matthew C. Cowperthwaite,Evan P. Economo,William R. Harcombe,Eric L. Miller,Lauren Ancel Meyers
#t2008
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#*Alternative Splicing in the Differentiation of Human Embryonic Stem Cells into Cardiac Precursors.
#@Nathan Salomonis,Brandon Nelson,Karen Vranizan,Alexander R. Pico,Kristina Hanspers,Allan Kuchinsky,Linda Ta,Mark Mercola,Bruce R. Conklin
#t2009
#cPLoS Computational Biology
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#*What Are Lightness Illusions and Why Do We See Them?
#@David Corney,R. Beau Lotto
#t2007
#cPLoS Computational Biology
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#*On Genetic Specificity in Symbiont-Mediated Host-Parasite Coevolution.
#@Marek Kwiatkowski,Jan Engelstädter,Christoph Vorburger
#t2012
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#*Interplay between the Localization and Kinetics of Phosphorylation in Flagellar Pole Development of the Bacterium .
#@Carolina Tropini,Kerwyn Casey Huang
#t2012
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#*Ten Simple Rules To Commercialize Scientific Research.
#@Anthony C. Fletcher,Philip E. Bourne
#t2012
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#*Dependencies among Editing Sites in Serotonin 2C Receptor mRNA.
#@Liran Carmel,Eugene V. Koonin,Stella Dracheva
#t2012
#cPLoS Computational Biology
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#*ProteinHistorian: Tools for the Comparative Analysis of Eukaryote Protein Origin.
#@John A. Capra,Alexander G. Williams,Katherine S. Pollard
#t2012
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#*Minimum Free Energy Path of Ligand-Induced Transition in Adenylate Kinase.
#@Yasuhiro Matsunaga,Hiroshi Fujisaki,Tohru Terada,Tadaomi Furuta,Kei Moritsugu,Akinori Kidera
#t2012
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#!
  
#*Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT.
#@Rasmus Agren,Sergio Bordel,Adil Mardinoglu,Natapol Pornputtapong,Intawat Nookaew,Jens Nielsen
#t2012
#cPLoS Computational Biology
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#!
  
#*Unifying Time to Contact Estimation and Collision Avoidance across Species.
#@Matthias S. Keil,Joan Lòpez-Moliner
#t2012
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#*Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference.
#@Feixiong Cheng,Chuang Liu,Jing Jiang,Weiqiang Lu,Weihua Li,Guixia Liu,Wei-Xing Zhou,Jin Huang,Yun Tang
#t2012
#cPLoS Computational Biology
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#!
  
#*Efficiency and Power as a Function of Sequence Coverage, SNP Array Density, and Imputation.
#@Jason Flannick,Joshua M. Korn,Pierre Fontanillas,George B. Grant,Eric Banks,Mark A. DePristo,David Altshuler
#t2012
#cPLoS Computational Biology
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#!
  
#*Integrative Approach to Pain Genetics Identifies Pain Sensitivity Loci across Diseases.
#@David Ruau,Joel Dudley,Rong Chen,Nicholas G. Phillips,Gary E. Swan,Laura Lazzeroni,J. David Clark,Atul J. Butte,Martin S. Angst
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Molecular Constraints on Synaptic Tagging and Maintenance of Long-Term Potentiation: A Predictive Model.
#@Paul Smolen,Douglas A. Baxter,John H. Byrne
#t2012
#cPLoS Computational Biology
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#!
  
#*What Evidence Is There for the Homology of Protein-Protein Interactions?
#@Anna C. F. Lewis,Nick S. Jones,Mason A. Porter,Charlotte M. Deane
#t2012
#cPLoS Computational Biology
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#*Simulation of Molecular Data under Diverse Evolutionary Scenarios.
#@Miguel Arenas
#t2012
#cPLoS Computational Biology
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#*Sub-diffraction Limit Localization of Proteins in Volumetric Space Using Bayesian Restoration of Fluorescence Images from Ultrathin Specimens.
#@Gordon Wang,Stephen J. Smith
#t2012
#cPLoS Computational Biology
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#*Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection.
#@Erik M. Volz,James S. Koopman,Melissa J. Ward,Andrew J. Leigh Brown,Simon D. W. Frost
#t2012
#cPLoS Computational Biology
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#!
  
#*Sparse Codes for Speech Predict Spectrotemporal Receptive Fields in the Inferior Colliculus.
#@Nicole L. Carlson,Vivienne L. Ming,Michael Robert DeWeese
#t2012
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#*From Dynamic Expression Patterns to Boundary Formation in the Presomitic Mesoderm.
#@Hendrik B. Tiedemann,Elida Schneltzer,Stefan Zeiser,Bastian Hoesel,Johannes Beckers,Gerhard K. H. Przemeck,Martin Hrabe de Angelis
#t2012
#cPLoS Computational Biology
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#!
  
#*Performance Limitations of Relay Neurons.
#@Rahul Agarwal,Sridevi V. Sarma
#t2012
#cPLoS Computational Biology
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#!
  
#*Model-Free Reconstruction of Excitatory Neuronal Connectivity from Calcium Imaging Signals.
#@Olav Stetter,Demian Battaglia,Jordi Soriano,Theo Geisel
#t2012
#cPLoS Computational Biology
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#!
  
#*Proteome Sampling by the HLA Class I Antigen Processing Pathway.
#@Ilka Hoof,Debbie van Baarle,William H. Hildebrand,Can Kesmir
#t2012
#cPLoS Computational Biology
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#*A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE.
#@Kevin P. Keegan,William L. Trimble,Jared Wilkening,Andreas Wilke,Travis Harrison,Mark D'Souza,Folker Meyer
#t2012
#cPLoS Computational Biology
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#*Predicting Signatures of "Synthetic Associations" and "Natural Associations" from Empirical Patterns of Human Genetic Variation.
#@Diana Chang,Alon Keinan
#t2012
#cPLoS Computational Biology
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#*Intermittent Motion in Desert Locusts: Behavioural Complexity in Simple Environments.
#@Sepideh Bazazi,Frederic Bartumeus,Joseph J. Hale,Iain D. Couzin
#t2012
#cPLoS Computational Biology
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#*Rational Engineering of Enzyme Allosteric Regulation through Sequence Evolution Analysis.
#@Jae-Seong Yang,Sang Woo Seo,Sungho Jang,Gyoo Yeol Jung,Sanguk Kim
#t2012
#cPLoS Computational Biology
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#*Fast Coding of Orientation in Primary Visual Cortex.
#@Oren Shriki,Adam Kohn,Maoz Shamir
#t2012
#cPLoS Computational Biology
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#*The Regulation of Ant Colony Foraging Activity without Spatial Information.
#@Balaji Prabhakar,Katherine N. Dektar,Deborah M. Gordon
#t2012
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#*Adaptive Temperature Compensation in Circadian Oscillations.
#@Paul François,Nicolas Despierre,Eric D. Siggia
#t2012
#cPLoS Computational Biology
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#*Importance of Electrostatic Interactions in the Association of Intrinsically Disordered Histone Chaperone Chz1 and Histone H2A.Z-H2B.
#@Xiakun Chu,Yong Wang,Linfeng Gan,Yawen Bai,Wei Han,Erkang Wang,Jin Wang
#t2012
#cPLoS Computational Biology
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#*What Can Systems Theory of Networks Offer to Biology?
#@Indika Rajapakse,Mark Groudine,Mehran Mesbahi
#t2012
#cPLoS Computational Biology
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#*A Report of the Curriculum Task Force of the ISCB Education Committee.
#@Lonnie R. Welch,Russell Schwartz,Fran Lewitter
#t2012
#cPLoS Computational Biology
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#*The Landscape of the Prion Protein's Structural Response to Mutation Revealed by Principal Component Analysis of Multiple NMR Ensembles.
#@Deena M. A. Gendoo,Paul M. Harrison
#t2012
#cPLoS Computational Biology
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#*The Impact of Phenotypic Switching on Glioblastoma Growth and Invasion.
#@Philip Gerlee,Sven Nelander
#t2012
#cPLoS Computational Biology
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#*Stochastic Simulations Suggest that HIV-1 Survives Close to Its Error Threshold.
#@Kushal Tripathi,Rajesh Balagam,Nisheeth K. Vishnoi,Narendra M. Dixit
#t2012
#cPLoS Computational Biology
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#*Spike-based Decision Learning of Nash Equilibria in Two-Player Games.
#@Johannes Friedrich,Walter Senn
#t2012
#cPLoS Computational Biology
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#*Why SIT Works: Normal Function Despite Typical Myofiber Pattern in Situs Inversus Totalis (SIT) Hearts Derived by Shear-induced Myofiber Reorientation.
#@Marieke Pluijmert,Wilco Kroon,Alessandro C. Rossi,Peter Bovendeerd,Tammo Delhaas
#t2012
#cPLoS Computational Biology
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#!
  
#*Visualization and Analysis of 3D Microscopic Images.
#@Fuhui Long,Jianlong Zhou,Hanchuan Peng
#t2012
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#*Determinants of Brain Cell Metabolic Phenotypes and Energy Substrate Utilization Unraveled with a Modeling Approach.
#@Aitana Neves,Robert Costalat,Luc Pellerin
#t2012
#cPLoS Computational Biology
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#*Complex Spatial Dynamics of Oncolytic Viruses In Vitro: Mathematical and Experimental Approaches.
#@Dominik Wodarz,Andrew Hofacre,John W. Lau,Zhiying Sun,Hung Fan,Natalia L. Komarova
#t2012
#cPLoS Computational Biology
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#!
  
#*Multistationary and Oscillatory Modes of Free Radicals Generation by the Mitochondrial Respiratory Chain Revealed by a Bifurcation Analysis.
#@Vitaly A. Selivanov,Marta Cascante,Mark Friedman,Mark F. Schumaker,Massimo Trucco,Tatyana V. Votyakova
#t2012
#cPLoS Computational Biology
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#!
  
#*Diversity and Noise Effects in a Model of Homeostatic Regulation of the Sleep-Wake Cycle.
#@Marco Patriarca,Svetlana Postnova,Hans A. Braun,Emilio Hernández-García,Raúl Toral
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Challenges and New Approaches to Proving the Existence of Muscle Synergies of Neural Origin.
#@Jason J. Kutch,Francisco J. Valero Cuevas
#t2012
#cPLoS Computational Biology
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#*Modeling Meiotic Chromosomes Indicates a Size Dependent Contribution of Telomere Clustering and Chromosome Rigidity to Homologue Juxtaposition.
#@Christopher A. Penfold,Paul E. Brown,Neil D. Lawrence,Alastair S. H. Goldman
#t2012
#cPLoS Computational Biology
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#*Posterior Association Networks and Functional Modules Inferred from Rich Phenotypes of Gene Perturbations.
#@Xin Wang,Mauro A. Castro,Klaas W. Mulder,Florian Markowetz
#t2012
#cPLoS Computational Biology
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#*Crossing Over...Markov Meets Mendel.
#@Saad Mneimneh
#t2012
#cPLoS Computational Biology
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#*Computing with Neural Synchrony.
#@Romain Brette
#t2012
#cPLoS Computational Biology
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#*Structural Drift: The Population Dynamics of Sequential Learning.
#@James P. Crutchfield,Sean Whalen
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Structural and Dynamic Requirements for Optimal Activity of the Essential Bacterial Enzyme Dihydrodipicolinate Synthase.
#@Cyril F. Reboul,Benjamin T. Porebski,M. D. W. Griffin,R. C. J. Dobson,M. A. Perugini,J. A. Gerrard,Ashley M. Buckle
#t2012
#cPLoS Computational Biology
#index3461595
#% 
#!
  
#*Filament Compliance Influences Cooperative Activation of Thin Filaments and the Dynamics of Force Production in Skeletal Muscle.
#@Bertrand C. W. Tanner,Thomas L. Daniel,Michael Regnier
#t2012
#cPLoS Computational Biology
#index3461555
#% 
#!
  
#*A Range-Normalization Model of Context-Dependent Choice: A New Model and Evidence.
#@Alireza Soltani,Benedetto De Martino,Colin Camerer
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Binding of Two Intrinsically Disordered Peptides to a Multi-Specific Protein: A Combined Monte Carlo and Molecular Dynamics Study.
#@Iskra Staneva,Yongqi Huang,Zhirong Liu,Stefan Wallin
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase.
#@Rafal Mostowy,Roger D. Kouyos,Ilka Hoof,Trevor Hinkley,Mojgan Haddad,Jeannette M. Whitcomb,Christos J. Petropoulos,Can Kesmir,Sebastian Bonhoeffer
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Structural Investigation of MscL Gating Using Experimental Data and Coarse Grained MD Simulations.
#@Evelyne Deplazes,Martti Louhivuori,Dylan Jayatilaka,Siewert J. Marrink,Ben Corry
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Prosthetic Avian Vocal Organ Controlled by a Freely Behaving Bird Based on a Low Dimensional Model of the Biomechanical Periphery.
#@Ezequiel M. Arneodo,Yonatan Sanz Perl,Franz Goller,Gabriel B. Mindlin
#t2012
#cPLoS Computational Biology
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#*Measuring Granger Causality between Cortical Regions from Voxelwise fMRI BOLD Signals with LASSO.
#@Wei Tang,Steven L. Bressler,Chad M. Sylvester,Gordon L. Shulman,Maurizio Corbetta
#t2012
#cPLoS Computational Biology
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#!
  
#*Gene Network Homology in Prokaryotes Using a Similarity Search Approach: Queries of Quorum Sensing Signal Transduction.
#@David N. Quan,William E. Bentley
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Probing the Mutational Interplay between Primary and Promiscuous Protein Functions: A Computational-Experimental Approach.
#@Hector Garcia-Seisdedos,Beatriz Ibarra-Molero,Jose M. Sanchez-Ruiz
#t2012
#cPLoS Computational Biology
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#!
  
#*Substrate-Specific Reorganization of the Conformational Ensemble of CSK Implicates Novel Modes of Kinase Function.
#@Michael A. Jamros,Leandro C. Oliveira,Paul C. Whitford,José N. Onuchic,Joseph A. Adams,Patricia A. Jennings
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Assessing the Relative Stability of Dimer Interfaces in G Protein-Coupled Receptors.
#@Jennifer M. Johnston,Hao Wang,Davide Provasi,Marta Filizola
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Optimality of Human Contour Integration.
#@Udo A. Ernst,Sunita Mandon,Nadja Schinkel-Bielefeld,Simon D. Neitzel,Andreas K. Kreiter,Klaus R. Pawelzik
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Tissue-Specific Functional Networks for Prioritizing Phenotype and Disease Genes.
#@Yuanfang Guan,Dmitriy Gorenshteyn,Margit Burmeister,Aaron K. Wong,John C. Schimenti,Mary Ann Handel,Carol J. Bult,Matthew A. Hibbs,Olga G. Troyanskaya
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Predicting the Extension of Biomedical Ontologies.
#@Catia Pesquita,Francisco M. Couto
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*A Network-based Approach for Predicting Missing Pathway Interactions.
#@Saket Navlakha,Anthony Gitter,Ziv Bar-Joseph
#t2012
#cPLoS Computational Biology
#index3461411
#% 
#!
  
#*Design and Implementation of a Genomics Field Trip Program Aimed at Secondary School Students.
#@Jennifer McQueen,Jody J. Wright,Joanne A. Fox
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Suppressed Expression of T-Box Transcription Factors Is Involved in Senescence in Chronic Obstructive Pulmonary Disease.
#@George K. Acquaah-Mensah,Deepti Malhotra,Madhulika Vulimiri,Jason E. McDermott,Shyam Biswal
#t2012
#cPLoS Computational Biology
#index3461439
#% 
#!
  
#*The p7 Protein of Hepatitis C Virus Forms Structurally Plastic, Minimalist Ion Channels.
#@Danielle E. Chandler,François Penin,Klaus Schulten,Christophe Chipot
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Human Motor Cortical Activity Is Selectively Phase-Entrained on Underlying Rhythms.
#@Kai J. Miller,Dora Hermes,Christopher J. Honey,Adam O. Hebb,Nick F. Ramsey,Robert T. Knight,Jeffrey G. Ojemann,Eberhard E. Fetz
#t2012
#cPLoS Computational Biology
#index3461512
#% 
#!
  
#*Evolutionary Dynamics on Protein Bi-stability Landscapes can Potentially Resolve Adaptive Conflicts.
#@Tobias Sikosek,Erich Bornberg-Bauer,Hue Sun Chan
#t2012
#cPLoS Computational Biology
#index3461568
#% 
#!
  
#*Assessing Drug Target Association Using Semantic Linked Data.
#@Bin Chen,Ying Ding,David J. Wild
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Emergence of a Small-World Functional Network in Cultured Neurons.
#@Julia H. Downes,Mark W. Hammond,Dimitris Xydas,Matthew C. Spencer,Victor M. Becerra,Kevin Warwick,Benjamin J. Whalley,Slawomir J. Nasuto
#t2012
#cPLoS Computational Biology
#index3461505
#% 
#!
  
#*Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes.
#@Christof Winter,Glen Kristiansen,Stephan Kersting,Janine Roy,Daniela Aust,Thomas Knösel,Petra Rümmele,Beatrix Jahnke,Vera Hentrich,Felix Rückert,Marco Niedergethmann,Wilko Weichert,Marcus Bahra,Hans J. Schlitt,Utz Settmacher,Helmut Friess,Markus W. Büchler,Hans-Detlev Saeger,Michael Schroeder,Christian Pilarsky,Robert Grützmann
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*A Computational Investigation on the Connection between Dynamics Properties of Ribosomal Proteins and Ribosome Assembly.
#@Brittany Burton,Michael T. Zimmermann,Robert L. Jernigan,Yongmei Wang
#t2012
#cPLoS Computational Biology
#index3461483
#% 
#!
  
#*A Preformed Binding Interface in the Unbound Ensemble of an Intrinsically Disordered Protein: Evidence from Molecular Simulations.
#@Michael Knott,Robert B. Best
#t2012
#cPLoS Computational Biology
#index3461435
#% 
#!
  
#*Fast Spatiotemporal Smoothing of Calcium Measurements in Dendritic Trees.
#@Eftychios A. Pnevmatikakis,Keith J. Kelleher,Rebecca Chen,Petter Saggau,Kresimir Josic,Liam Paninski
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*Prediction of Microbial Growth Rate versus Biomass Yield by a Metabolic Network with Kinetic Parameters.
#@Roi Adadi,Benjamin Volkmer,Ron Milo,Matthias Heinemann,Tomer Shlomi
#t2012
#cPLoS Computational Biology
#index3461616
#% 
#!
  
#*Modeling of Gap Gene Expression in Mutants.
#@Konstantin Kozlov,Svetlana Surkova,Ekaterina Myasnikova,John Reinitz,Maria Samsonova
#t2012
#cPLoS Computational Biology
#index3461596
#% 
#!
  
#*Accessible High-Throughput Virtual Screening Molecular Docking Software for Students and Educators.
#@Reed B. Jacob,Tim Andersen,Owen M. McDougal
#t2012
#cPLoS Computational Biology
#index3461425
#% 
#!
  
#*Functional Roles for Synaptic-Depression within a Model of the Fly Antennal Lobe.
#@Aaditya V. Rangan
#t2012
#cPLoS Computational Biology
#index3461454
#% 
#!
  
#*Convergent Transmission of RNAi Guide-Target Mismatch Information across Argonaute Internal Allosteric Network.
#@Thomas T. Joseph,Roman Osman
#t2012
#cPLoS Computational Biology
#index3461533
#% 
#!
  
#*A Topological Paradigm for Hippocampal Spatial Map Formation Using Persistent Homology.
#@Yu. Dabaghian,Facundo Mémoli,L. Frank,Gunnar Carlsson
#t2012
#cPLoS Computational Biology
#index3461569
#% 
#!
  
#*Allosteric Communication across the Native and Mutated KIT Receptor Tyrosine Kinase.
#@Elodie Laine,Christian Auclair,Luba Tchertanov
#t2012
#cPLoS Computational Biology
#index3461547
#% 
#!
  
#*International Society for Computational Biology Honours Gunnar von Heijne and Ziv Bar-Joseph with Top Bioinformatics/Computational Biology Awards for 2012.
#@Justin Mullins,B. J. Morrison McKay
#t2012
#cPLoS Computational Biology
#index3461462
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#!
  
#*Shaping the Dynamics of a Bidirectional Neural Interface.
#@Alessandro Vato,Marianna Semprini,Emma Maggiolini,Francois D. Szymanski,Luciano Fadiga,Stefano Panzeri,Ferdinando A. Mussa-Ivaldi
#t2012
#cPLoS Computational Biology
#index3461412
#% 
#!
  
#*The Mechanistic Basis of Rippling Behavior and Its Physiological Role during Predation.
#@Haiyang Zhang,Zalman Vaksman,Douglas B. Litwin,Peng Shi,Heidi B. Kaplan,Oleg A. Igoshin
#t2012
#cPLoS Computational Biology
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#% 
#!
  
#*The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes.
#@Adam Alexander Thil Smith,Eugeni Belda,Alain Viari,Claudine Médigue,David Vallenet
#t2012
#cPLoS Computational Biology
#index3461582
#% 
#!
  
#*The Role of Local Backrub Motions in Evolved and Designed Mutations.
#@Daniel Keedy,Ivelin Georgiev,Edward B. Triplett,Bruce Randall Donald,David C. Richardson,Jane S. Richardson
#t2012
#cPLoS Computational Biology
#index3461472
#% 
#!
  
#*Structure and Age Jointly Influence Rates of Protein Evolution.
#@Macarena Toll-Riera,David L. Bostick,M. Mar Albà,Joshua B. Plotkin
#t2012
#cPLoS Computational Biology
#index3461527
#% 
#!
  
#*Virus Capsid Dissolution Studied by Microsecond Molecular Dynamics Simulations.
#@Daniel S. D. Larsson,Lars Liljas,David van der Spoel
#t2012
#cPLoS Computational Biology
#index3461570
#% 
#!
  
#*Multiple Genetic Interaction Experiments Provide Complementary Information Useful for Gene Function Prediction.
#@Magali Michaut,Gary D. Bader
#t2012
#cPLoS Computational Biology
#index3461558
#% 
#!
  
#*Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome.
#@Sahar Abubucker,Nicola Segata,Johannes Goll,Alyxandria M. Schubert,Jacques Izard,Brandi L. Cantarel,Beltran Rodriguez-Mueller,Jeremy Zucker,Mathangi Thiagarajan,Bernard Henrissat,Owen White,Scott T. Kelley,Barbara A. Methé,Patrick D. Schloss,Dirk Gevers,Makedonka Dautova Mitreva,Curtis Huttenhower
#t2012
#cPLoS Computational Biology
#index3461479
#% 
#!
  
#*Speeded Reaching Movements around Invisible Obstacles.
#@Todd E. Hudson,Uta Wolfe,Laurence T. Maloney
#t2012
#cPLoS Computational Biology
#index3461504
#% 
#!
  
#*Enhancing the Prioritization of Disease-Causing Genes through Tissue Specific Protein Interaction Networks.
#@Oded Magger,Yedael Y. Waldman,Eytan Ruppin,Roded Sharan
#t2012
#cPLoS Computational Biology
#index3461516
#% 
#!
  
#*Automated Tracking of Whiskers in Videos of Head Fixed Rodents.
#@Nathan G. Clack,Daniel H. O'Connor,Daniel Huber,Leopoldo Petreanu,Andrew Hires,Simon Peron,Karel Svoboda,Eugene W. Myers
#t2012
#cPLoS Computational Biology
#index3461513
#% 
#!
  
#*Charge Profile Analysis Reveals That Activation of Pro-apoptotic Regulators Bax and Bak Relies on Charge Transfer Mediated Allosteric Regulation.
#@Crina-Maria Ionescu,Radka Svobodová Vareková,Jochen H. M. Prehn,Heinrich J. Huber,Jaroslav Koca
#t2012
#cPLoS Computational Biology
#index3461460
#% 
#!
  
#*Confidence-based Somatic Mutation Evaluation and Prioritization.
#@Martin Löwer,Bernhard Y. Renard,Jos de Graaf,Meike Wagner,Claudia Paret,Christoph Kneip,Özlem Türeci,Mustafa Diken,Cedrik Britten,Sebastian Kreiter,Michael Koslowski,John C. Castle,Ugur Sahin
#t2012
#cPLoS Computational Biology
#index3461615
#% 
#!
  
#*Single Nucleotide Polymorphisms Can Create Alternative Polyadenylation Signals and Affect Gene Expression through Loss of MicroRNA-Regulation.
#@Laurent F. Thomas,Pål Sætrom
#t2012
#cPLoS Computational Biology
#index3461576
#% 
#!
  
#*Insights into the Fold Organization of TIM Barrel from Interaction Energy Based Structure Networks.
#@M. S. Vijayabaskar,Saraswathi Vishveshwara
#t2012
#cPLoS Computational Biology
#index3461557
#% 
#!
  
#*Identification of Molecular Pathologies Sufficient to Cause Neuropathic Excitability in Primary Somatosensory Afferents Using Dynamical Systems Theory.
#@Young-Ah Rho,Steven A. Prescott
#t2012
#cPLoS Computational Biology
#index3461453
#% 
#!
  
#*Activity Dependent Degeneration Explains Hub Vulnerability in Alzheimer's Disease.
#@Willem de Haan,Katherine Mott,Elisabeth C. W. van Straaten,Philip Scheltens,Cornelis J. Stam
#t2012
#cPLoS Computational Biology
#index3461488
#% 
#!
  
#*Location-Dependent Effects of Inhibition on Local Spiking in Pyramidal Neuron Dendrites.
#@Monika Jadi,Alon Polsky,Jackie Schiller,Bartlett W. Mel
#t2012
#cPLoS Computational Biology
#index3461541
#% 
#!
  
#*A Maximum Entropy Test for Evaluating Higher-Order Correlations in Spike Counts.
#@Arno Onken,Valentin Dragoi,Klaus Obermayer
#t2012
#cPLoS Computational Biology
#index3461551
#% 
#!
  
#*Analysis of Surface Protein Expression Reveals the Growth Pattern of the Gram-Negative Outer Membrane.
#@Tristan Ursell,Eliane H. Trepagnier,Kerwyn Casey Huang,Julie A. Theriot
#t2012
#cPLoS Computational Biology
#index3461442
#% 
#!
  
#*Mutual Repression Enhances the Steepness and Precision of Gene Expression Boundaries.
#@Thomas R. Sokolowski,Thorsten Erdmann,Pieter Rein ten Wolde
#t2012
#cPLoS Computational Biology
#index3461495
#% 
#!
  
#*Spine Calcium Transients Induced by Synaptically-Evoked Action Potentials Can Predict Synapse Location and Establish Synaptic Democracy.
#@David C. Sterratt,Martine R. Groen,Rhiannon M. Meredith,Arjen van Ooyen
#t2012
#cPLoS Computational Biology
#index3461416
#% 
#!
  
#*Inferring Dynamic Signatures of Microbes in Complex Host Ecosystems.
#@Georg K. Gerber,Andrew B. Onderdonk,Lynn Bry
#t2012
#cPLoS Computational Biology
#index3461532
#% 
#!
  
#*Bioinformatics Meets User-Centred Design: A Perspective.
#@Katrina Pavelin,Jennifer A. Cham,Paula de Matos,Catherine Brooksbank,Graham Cameron,Christoph Steinbeck
#t2012
#cPLoS Computational Biology
#index3461535
#% 
#!
  
#*Spectral Analysis of Input Spike Trains by Spike-Timing-Dependent Plasticity.
#@Matthieu Gilson,Tomoki Fukai,Anthony N. Burkitt
#t2012
#cPLoS Computational Biology
#index3461452
#% 
#!
  
#*Genome-Wide Localization of Protein-DNA Binding and Histone Modification by a Bayesian Change-Point Method with ChIP-seq Data.
#@Haipeng Xing,Yifan Mo,Will Liao,Michael Q. Zhang
#t2012
#cPLoS Computational Biology
#index3461432
#% 
#!
  
#*A Scalable Algorithm to Explore the Gibbs Energy Landscape of Genome-Scale Metabolic Networks.
#@Daniele De Martino,Matteo Figliuzzi,Andrea De Martino,Enzo Marinari
#t2012
#cPLoS Computational Biology
#index3461478
#% 
#!
  
#*External Drive to Inhibitory Cells Induces Alternating Episodes of High- and Low-Amplitude Oscillations.
#@Oscar J. Avella Gonzalez,Karlijn I. van Aerde,Ronald A. J. van Elburg,Simon-Shlomo Poil,Huibert D. Mansvelder,Klaus Linkenkaer-Hansen,Jaap van Pelt,Arjen van Ooyen
#t2012
#cPLoS Computational Biology
#index3461523
#% 
#!
  
#*The Layer-Oriented Approach to Declarative Languages for Biological Modeling.
#@Ivan Raikov,Erik De Schutter
#t2012
#cPLoS Computational Biology
#index3461443
#% 
#!
  
#*Virtual Patients and Sensitivity Analysis of the Guyton Model of Blood Pressure Regulation: Towards Individualized Models of Whole-Body Physiology.
#@Robert Moss,Thibault Grosse,Ivanny Marchant,Nathalie Lassau,François Gueyffier,S. Randall Thomas
#t2012
#cPLoS Computational Biology
#index3461617
#% 
#!
  
#*Mechanical Stress Inference for Two Dimensional Cell Arrays.
#@Kevin K. Chiou,Lars Hufnagel,Boris I. Shraiman
#t2012
#cPLoS Computational Biology
#index3461498
#% 
#!
  
#*Excitatory Local Interneurons Enhance Tuning of Sensory Information.
#@Collins Assisi,Mark Stopfer,Maxim Bazhenov
#t2012
#cPLoS Computational Biology
#index3461549
#% 
#!
  
#*Defining the Nature of Thermal Intermediate in 3 State Folding Proteins: Apoflavodoxin, a Study Case.
#@Rebeca García-Fandiño,Pau Bernadó,Sara Ayuso-Tejedor,Javier Sancho,Modesto Orozco
#t2012
#cPLoS Computational Biology
#index3461586
#% 
#!
  
#*Individual Rules for Trail Pattern Formation in Argentine Ants ().
#@Andrea Perna,Boris Granovskiy,Simon Garnier,Stamatios C. Nicolis,Marjorie Labédan,Guy Theraulaz,Vincent Fourcassié,David J. T. Sumpter
#t2012
#cPLoS Computational Biology
#index3461461
#% 
#!
  
#*Protein Scaffolds Can Enhance the Bistability of Multisite Phosphorylation Systems.
#@Carlo Chan,Xinfeng Liu,Liming Wang,Lee Bardwell,Qing Nie,Germán Enciso
#t2012
#cPLoS Computational Biology
#index3461424
#% 
#!
  
#*Locust Dynamics: Behavioral Phase Change and Swarming.
#@Chad M. Topaz,Maria R. D'Orsogna,Leah Edelstein-Keshet,Andrew J. Bernoff
#t2012
#cPLoS Computational Biology
#index3461540
#% 
#!
  
#*Termination of Ca Release for Clustered IPR Channels.
#@Sten Rüdiger,Peter Jung,Jian-Wei Shuai
#t2012
#cPLoS Computational Biology
#index3461603
#% 
#!
  
#*Alternative Protein-Protein Interfaces Are Frequent Exceptions.
#@Tobias Hamp,Burkhard Rost
#t2012
#cPLoS Computational Biology
#index3461499
#% 
#!
  
#*The Role of Non-Native Interactions in the Folding of Knotted Proteins.
#@Tatjana Skrbic,Cristian Micheletti,Pietro Faccioli
#t2012
#cPLoS Computational Biology
#index3461593
#% 
#!
  
#*Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma.
#@Jingchun Sun,Xue Gong,Benjamin Purow,Zhongming Zhao
#t2012
#cPLoS Computational Biology
#index3461434
#% 
#!
  
#*Evolutionary Dynamics of Strategic Behavior in a Collective-Risk Dilemma.
#@Maria Abou Chakra,Arne Traulsen
#t2012
#cPLoS Computational Biology
#index3461455
#% 
#!
  
#*A Two-Dimensional Model of the Colonic Crypt Accounting for the Role of the Basement Membrane and Pericryptal Fibroblast Sheath.
#@Sara-Jane Dunn,Paul L. Appleton,Scott A. Nelson,Inke S. Näthke,David Gavaghan,James M. Osborne
#t2012
#cPLoS Computational Biology
#index3461598
#% 
#!
  
#*A Nonlinear Dynamic Approach Reveals a Long-Term Stroke Effect on Cerebral Blood Flow Regulation at Multiple Time Scales.
#@Kun Hu,Men-Tzung Lo,Chung-Kang Peng,Yanhui Liu,Vera Novak
#t2012
#cPLoS Computational Biology
#index3461604
#% 
#!
  
#*Short Term Synaptic Depression Imposes a Frequency Dependent Filter on Synaptic Information Transfer.
#@Robert Rosenbaum,Jonathan Rubin,Brent Doiron
#t2012
#cPLoS Computational Biology
#index3461417
#% 
#!
  
#*Location-Dependent Excitatory Synaptic Interactions in Pyramidal Neuron Dendrites.
#@Bardia F. Behabadi,Alon Polsky,Monika Jadi,Jackie Schiller,Bartlett W. Mel
#t2012
#cPLoS Computational Biology
#index3461473
#% 
#!
  
#*Mechanism of Bacterial Signal Transduction Revealed by Molecular Dynamics of Tsr Dimers and Trimers of Dimers in Lipid Vesicles.
#@Benjamin A. Hall,Judith P. Armitage,Mark S. P. Sansom
#t2012
#cPLoS Computational Biology
#index3461489
#% 
#!
  
#*Modelling Cell Polarization Driven by Synthetic Spatially Graded Rac Activation.
#@William R. Holmes,Benjamin Lin,Andre Levchenko,Leah Edelstein-Keshet
#t2012
#cPLoS Computational Biology
#index3461470
#% 
#!
  
#*A Canonical Model of Multistability and Scale-Invariance in Biological Systems.
#@Frank Freyer,James A. Roberts,Petra Ritter,Michael Breakspear
#t2012
#cPLoS Computational Biology
#index3461575
#% 
#!
  
#*Risk-Sensitivity in Bayesian Sensorimotor Integration.
#@Jordi Grau-Moya,Pedro A. Ortega,Daniel A. Braun
#t2012
#cPLoS Computational Biology
#index3461451
#% 
#!
  
#*Decorrelation of Neural-Network Activity by Inhibitory Feedback.
#@Tom Tetzlaff,Moritz Helias,Gaute T. Einevoll,Markus Diesmann
#t2012
#cPLoS Computational Biology
#index3461433
#% 
#!
  
#*High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints.
#@Yuchun Guo,Shaun Mahony,David K. Gifford
#t2012
#cPLoS Computational Biology
#index3461517
#% 
#!
  
#*Homeostatic Scaling of Excitability in Recurrent Neural Networks.
#@Michiel W. H. Remme,Wytse J. Wadman
#t2012
#cPLoS Computational Biology
#index3461534
#% 
#!
  
#*NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems.
#@Matthew C. Schmidt,Andrea M. Rocha,Kanchana Padmanabhan,Yekaterina Shpanskaya,Jillian F. Banfield,Kathleen Scott,James R. Mihelcic,Nagiza F. Samatova
#t2012
#cPLoS Computational Biology
#index3461623
#% 
#!
  
#*Inferring Correlation Networks from Genomic Survey Data.
#@Jonathan Friedman,Eric J. Alm
#t2012
#cPLoS Computational Biology
#index3461610
#% 
#!
  
#*Shrinking the Metabolic Solution Space Using Experimental Datasets.
#@Jennifer L. Reed
#t2012
#cPLoS Computational Biology
#index3461522
#% 
#!
  
#*Sarcomeric Pattern Formation by Actin Cluster Coalescence.
#@Benjamin M. Friedrich,Elisabeth Fischer-Friedrich,Nir S. Gov,Samuel A. Safran
#t2012
#cPLoS Computational Biology
#index3461494
#% 
#!
  
#*Potassium Starvation in Yeast: Mechanisms of Homeostasis Revealed by Mathematical Modeling.
#@Matthias Kahm,Clara Navarrete,Vicent Llopis-Torregrosa,Rito Herrera,Lina Barreto,Lynne Yenush,Joaquín Ariño,Jose Ramos,Maik Kschischo
#t2012
#cPLoS Computational Biology
#index3461542
#% 
#!
  
#*Literature Based Drug Interaction Prediction with Clinical Assessment Using Electronic Medical Records: Novel Myopathy Associated Drug Interactions.
#@Jon D. Duke,Xu Han,Zhiping Wang,Abhinita Subhadarshini,Shreyas D. Karnik,Xiaochun Li,Stephen D. Hall,Yan Jin,J. Thomas Callaghan,Marcus J. Overhage,David A. Flockhart,R. Matthew Strother,Sara K. Quinney,Lang Li
#t2012
#cPLoS Computational Biology
#index3461497
#% 
#!
  
#*Mutation Induced Extinction in Finite Populations: Lethal Mutagenesis and Lethal Isolation.
#@C. Scott Wylie,Eugene I. Shakhnovich
#t2012
#cPLoS Computational Biology
#index3461574
#% 
#!
  
#*MC EMiNEM Maps the Interaction Landscape of the Mediator.
#@Theresa Niederberger,Stefanie Etzold,Michael Lidschreiber,Kerstin C. Maier,Dietmar E. Martin,Holger Fröhlich,Patrick Cramer,Achim Tresch
#t2012
#cPLoS Computational Biology
#index3461573
#% 
#!
  
#*General Anesthetics Predicted to Block the GLIC Pore with Micromolar Affinity.
#@David N. LeBard,Jérôme Hénin,Roderic G. Eckenhoff,Michael L. Klein,Grace Brannigan
#t2012
#cPLoS Computational Biology
#index3461458
#% 
#!
  
#*Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs.
#@Adrian M. Altenhoff,Romain A. Studer,Marc Robinson-Rechavi,Christophe Dessimoz
#t2012
#cPLoS Computational Biology
#index3461423
#% 
#!
  
#*Maintaining a Cognitive Map in Darkness: The Need to Fuse Boundary Knowledge with Path Integration.
#@Allen Cheung,David Ball,Michael Milford,Gordon Wyeth,Janet Wiles
#t2012
#cPLoS Computational Biology
#index3461456
#% 
#!
  
#*Modeling of Pharmacokinetics of Cocaine in Human Reveals the Feasibility for Development of Enzyme Therapies for Drugs of Abuse.
#@Fang Zheng,Chang-Guo Zhan
#t2012
#cPLoS Computational Biology
#index3461585
#% 
#!
  
#*A Quick Guide to Software Licensing for the Scientist-Programmer.
#@Andrew Morin,Jennifer Urban,Piotr Sliz
#t2012
#cPLoS Computational Biology
#index3461430
#% 
#!
  
#*Adhesion Failures Determine the Pattern of Choroidal Neovascularization in the Eye: A Computer Simulation Study.
#@Abbas Shirinifard,James A. Glazier,Maciej Swat,J. Scott Gens,Fereydoon Family,Yi Jiang,Hans E. Grossniklaus
#t2012
#cPLoS Computational Biology
#index3461481
#% 
#!
  
#*Deciphering Interactions in Moving Animal Groups.
#@Jacques Gautrais,Francesco Ginelli,Richard Fournier,Stéphane Blanco,Marc Soria,Hugues Chaté,Guy Theraulaz
#t2012
#cPLoS Computational Biology
#index3461487
#% 
#!
  
#*Coding Conspecific Identity and Motion in the Electric Sense.
#@Na Yu,Ginette Hupé,Charles Garfinkle,John E. Lewis,André Longtin
#t2012
#cPLoS Computational Biology
#index3461525
#% 
#!
  
#*Which of Our Modeling Predictions Are Robust?
#@Rob J. De Boer
#t2012
#cPLoS Computational Biology
#index3461471
#% 
#!
  
#*Data Sharing in the Post-Genomic World: The Experience of the International Cancer Genome Consortium (ICGC) Data Access Compliance Office (DACO).
#@Yann Joly,Edward S. Dove,Bartha M. Knoppers,Martin Bobrow,Don Chalmers
#t2012
#cPLoS Computational Biology
#index3461444
#% 
#!
  
#*An Integrated Regulatory Network Reveals Pervasive Cross-Regulation among Transcription and Splicing Factors.
#@Idit Kosti,Predrag Radivojac,Yael Mandel-Gutfreund
#t2012
#cPLoS Computational Biology
#index3461599
#% 
#!
  
#*Versatility and Invariance in the Evolution of Homologous Heteromeric Interfaces.
#@Jessica Andreani,Guilhem Faure,Raphaël Guérois
#t2012
#cPLoS Computational Biology
#index3461544
#% 
#!
  
#*Complementarity of Spike- and Rate-Based Dynamics of Neural Systems.
#@M. T. Wilson,P. A. Robinson,B. O'Neill,D. A. Steyn-Ross
#t2012
#cPLoS Computational Biology
#index3461500
#% 
#!
  
#*Modeling the Seasonal Adaptation of Circadian Clocks by Changes in the Network Structure of the Suprachiasmatic Nucleus.
#@Christian Bodenstein,Marko Gosak,Stefan Schuster,Marko Marhl,Matjaz Perc
#t2012
#cPLoS Computational Biology
#index3461602
#% 
#!
  
#*The Spatial Structure of Stimuli Shapes the Timescale of Correlations in Population Spiking Activity.
#@Ashok Litwin-Kumar,Maurice J. Chacron,Brent Doiron
#t2012
#cPLoS Computational Biology
#index3461587
#% 
#!
  
#*Quantitative Predictions of Binding Free Energy Changes in Drug-Resistant Influenza Neuraminidase.
#@Daniel R. Ripoll,Ilja V. Khavrutskii,Sidhartha Chaudhury,Jin Liu,Robert A. Kuschner,Anders Wallqvist,Jaques Reifman
#t2012
#cPLoS Computational Biology
#index3461580
#% 
#!
  
#*Correlated Electrostatic Mutations Provide a Reservoir of Stability in HIV Protease.
#@Omar Haq,Michael Andrec,Alexandre V. Morozov,Ronald M. Levy
#t2012
#cPLoS Computational Biology
#index3461537
#% 
#!
  
#*Inferring the Structure of Social Contacts from Demographic Data in the Analysis of Infectious Diseases Spread.
#@Laura Fumanelli,Marco Ajelli,Piero Manfredi,Alessandro Vespignani,Stefano Merler
#t2012
#cPLoS Computational Biology
#index3461414
#% 
#!
  
#*Quality of Computationally Inferred Gene Ontology Annotations.
#@Nives Skunca,Adrian M. Altenhoff,Christophe Dessimoz
#t2012
#cPLoS Computational Biology
#index3461559
#% 
#!
  
#*Efficient Reverse-Engineering of a Developmental Gene Regulatory Network.
#@Anton Crombach,Karl R. Wotton,Damjan Cicin-Sain,Maksat Ashyraliyev,Johannes Jaeger
#t2012
#cPLoS Computational Biology
#index3461437
#% 
#!
  
#*Coupling between Catalytic Loop Motions and Enzyme Global Dynamics.
#@Zeynep Kurkcuoglu,Ahmet Bakan,Duygu Kocaman,Ivet Bahar,Pemra Doruker
#t2012
#cPLoS Computational Biology
#index3461550
#% 
#!
  
#*Modeling Within-Host Dynamics of Influenza Virus Infection Including Immune Responses.
#@Kasia A. Pawelek,Giao T. Huynh,Michelle Quinlivan,Ann Cullinane,Libin Rong,Alan S. Perelson
#t2012
#cPLoS Computational Biology
#index3461578
#% 
#!
  
#*Quantifying the Contribution of the Liver to Glucose Homeostasis: A Detailed Kinetic Model of Human Hepatic Glucose Metabolism.
#@Matthias König,Sascha Bulik,Hermann-Georg Holzhütter
#t2012
#cPLoS Computational Biology
#index3461480
#% 
#!
  
#*Deceleration of Fusion-Fission Cycles Improves Mitochondrial Quality Control during Aging.
#@Marc Thilo Figge,Andreas S. Reichert,Michael Meyer-Hermann,Heinz D. Osiewacz
#t2012
#cPLoS Computational Biology
#index3461543
#% 
#!
  
#*Spontaneous Excitation Patterns Computed for Axons with Injury-like Impairments of Sodium Channels and Na/K Pumps.
#@Na Yu,Catherine E. Morris,Béla Joós,André Longtin
#t2012
#cPLoS Computational Biology
#index3461600
#% 
#!
  
#*Modeling HIV-1 Drug Resistance as Episodic Directional Selection.
#@Ben Murrell,Tulio de Oliveira,Chris Seebregts,Sergei L. Kosakovsky Pond,Konrad Scheffler
#t2012
#cPLoS Computational Biology
#index3461431
#% 
#!
  
#*Thermodynamic Basis for the Emergence of Genomes during Prebiotic Evolution.
#@Hyung-June Woo,Ravi Vijaya Satya,Jaques Reifman
#t2012
#cPLoS Computational Biology
#index3461565
#% 
#!
  
#*Network-Assisted Investigation of Combined Causal Signals from Genome-Wide Association Studies in Schizophrenia.
#@Peilin Jia,Lily Wang,Ayman H. Fanous,Carlos N. Pato,Todd L. Edwards,Zhongming Zhao
#t2012
#cPLoS Computational Biology
#index3461496
#% 
#!
  
#*Evolution of Stress Response in the Face of Unreliable Environmental Signals.
#@Markus Arnoldini,Rafal Mostowy,Sebastian Bonhoeffer,Martin Ackermann
#t2012
#cPLoS Computational Biology
#index3461436
#% 
#!
  
#*Conformational Spread in the Flagellar Motor Switch: A Model Study.
#@Qi Ma,Dan V. Nicolau Jr.,Philip K. Maini,Richard M. Berry,Fan Bai
#t2012
#cPLoS Computational Biology
#index3461459
#% 
#!
  
#*Modular Design of Artificial Tissue Homeostasis: Robust Control through Synthetic Cellular Heterogeneity.
#@Miles Miller,Marc Hafner,Eduardo Sontag,Noah Davidsohn,Sairam Subramanian,Priscilla E. M. Purnick,Douglas A. Lauffenburger,Ron Weiss
#t2012
#cPLoS Computational Biology
#index3461552
#% 
#!
  
#*Spike-Timing Dependence of Structural Plasticity Explains Cooperative Synapse Formation in the Neocortex.
#@Moritz Deger,Moritz Helias,Stefan Rotter,Markus Diesmann
#t2012
#cPLoS Computational Biology
#index3461588
#% 
#!
  
#*A Spatial Model of Mosquito Host-Seeking Behavior.
#@Bree Cummins,Ricardo Cortez,Ivo M. Foppa,Justin Walbeck,James M. Hyman
#t2012
#cPLoS Computational Biology
#index3461579
#% 
#!
  
#*The Roots of Bioinformatics in ISMB.
#@Todd A. Gibson
#t2012
#cPLoS Computational Biology
#index3461609
#% 
#!
  
#*Modeling Phenotypic Metabolic Adaptations of H37Rv under Hypoxia.
#@Xin Fang,Anders Wallqvist,Jaques Reifman
#t2012
#cPLoS Computational Biology
#index3461536
#% 
#!
  
#*Learning with Slight Forgetting Optimizes Sensorimotor Transformation in Redundant Motor Systems.
#@Masaya Hirashima,Daichi Nozaki
#t2012
#cPLoS Computational Biology
#index3461445
#% 
#!
  
#*Teasing Apart Translational and Transcriptional Components of Stochastic Variations in Eukaryotic Gene Expression.
#@Raheleh Salari,Damian Wójtowicz,Jie Zheng,David Levens,Yitzhak Pilpel,Teresa M. Przytycka
#t2012
#cPLoS Computational Biology
#index3461415
#% 
#!
  
#*Finding a Needle in a Haystack: The Role of Electrostatics in Target Lipid Recognition by PH Domains.
#@Craig N. Lumb,Mark S. P. Sansom
#t2012
#cPLoS Computational Biology
#index3461515
#% 
#!
  
#*Criticality Is an Emergent Property of Genetic Networks that Exhibit Evolvability.
#@Christian Torres-Sosa,Sui Huang,Maximino Aldana
#t2012
#cPLoS Computational Biology
#index3461608
#% 
#!
  
#*Intrinsic Disorder in the Human Spliceosomal Proteome.
#@Iga Korneta,Janusz M. Bujnicki
#t2012
#cPLoS Computational Biology
#index3461524
#% 
#!
  
#*Hybrid Models and Biological Model Reduction with PyDSTool.
#@Robert Clewley
#t2012
#cPLoS Computational Biology
#index3461457
#% 
#!
  
#*High-throughput Computer Method for 3D Neuronal Structure Reconstruction from the Image Stack of the Brain and Its Applications.
#@Ping-Chang Lee,Chao-Chun Chuang,Ann-Shyn Chiang,Yu-Tai Ching
#t2012
#cPLoS Computational Biology
#index3461486
#% 
#!
  
#*Why Open Drug Discovery Needs Four Simple Rules for Licensing Data and Models.
#@Antony J. Williams,John Wilbanks,Sean Ekins
#t2012
#cPLoS Computational Biology
#index3461611
#% 
#!
  
#*Digital Epidemiology.
#@Marcel Salathé,Linus Bengtsson,Todd J. Bodnar,Devon D. Brewer,John S. Brownstein,Caroline O. Buckee,Ellsworth M. Campbell,Ciro Cattuto,Shashank Khandelwal,Patricia L. Mabry,Alessandro Vespignani
#t2012
#cPLoS Computational Biology
#index3461421
#% 
#!
  
#*A Simple Histone Code Opens Many Paths to Epigenetics.
#@Kim Sneppen,Ian B. Dodd
#t2012
#cPLoS Computational Biology
#index3461501
#% 
#!
  
#*Stress-Induced Impairment of a Working Memory Task: Role of Spiking Rate and Spiking History Predicted Discharge.
#@David M. Devilbiss,Rick L. Jenison,Craig W. Berridge
#t2012
#cPLoS Computational Biology
#index3461440
#% 
#!
  
#*Exploring Massive, Genome Scale Datasets with the GenometriCorr Package.
#@Alexander V. Favorov,Loris Mularoni,Leslie M. Cope,Yulia A. Medvedeva,Andrey A. Mironov,Vsevolod Makeev,Sarah J. Wheelan
#t2012
#cPLoS Computational Biology
#index3461514
#% 
#!
  
#*Viral Perturbations of Host Networks Reflect Disease Etiology.
#@Natali Gulbahce,Han Yan,Amélie Dricot,Megha Padi,Danielle Byrdsong,Rachel Franchi,Deok-Sun Lee,Orit Rozenblatt-Rosen,Jessica C. Mar,Michael A. Calderwood,Amy Baldwin,Bo Zhao,Balaji Santhanam,Pascal Braun,Nicolas Simonis,Kyung-Won Huh,Karin Hellner,Miranda Grace,Alyce Chen,Renee Rubio,Jarrod A. Marto,Nicholas A. Christakis,Elliott Kieff,Frederick P. Roth,Jennifer Roecklein-Canfield,James A. DeCaprio,Michael E. Cusick,John Quackenbush,David E. Hill,Karl Münger,Marc Vidal,Albert-László Barabási
#t2012
#cPLoS Computational Biology
#index3461621
#% 
#!
  
#*Fine-Tuning Tomato Agronomic Properties by Computational Genome Redesign.
#@Javier Carrera,Asun Fernández del Carmen,Rafael Fernández-Muñoz,Jose Luis Rambla,Clara Pons,Alfonso Jaramillo,Santiago F. Elena,Antonio Granell
#t2012
#cPLoS Computational Biology
#index3461450
#% 
#!
  
#*Equation-Free Analysis of Two-Component System Signalling Model Reveals the Emergence of Co-Existing Phenotypes in the Absence of Multistationarity.
#@Rebecca B. Hoyle,Daniele Avitabile,Andrzej M. Kierzek
#t2012
#cPLoS Computational Biology
#index3461560
#% 
#!
  
#*Molecular Dynamics Simulations Reveal Proton Transfer Pathways in Cytochrome C-Dependent Nitric Oxide Reductase.
#@Andrei V. Pisliakov,Tomoya Hino,Yoshitsugu Shiro,Yuji Sugita
#t2012
#cPLoS Computational Biology
#index3461447
#% 
#!
  
#*Entrainment of the Mammalian Cell Cycle by the Circadian Clock: Modeling Two Coupled Cellular Rhythms.
#@Claude Gérard,Albert Goldbeter
#t2012
#cPLoS Computational Biology
#index3461422
#% 
#!
  
#*Prediction of Mutational Tolerance in HIV-1 Protease and Reverse Transcriptase Using Flexible Backbone Protein Design.
#@Elisabeth Humphris-Narayanan,Eyal Akiva,Rocco Varela,Shane Ó Conchúir,Tanja Kortemme
#t2012
#cPLoS Computational Biology
#index3461428
#% 
#!
  
#*Optimal Control of Saccades by Spatial-Temporal Activity Patterns in the Monkey Superior Colliculus.
#@H. H. L. M. Goossens,A. John van Opstal
#t2012
#cPLoS Computational Biology
#index3461475
#% 
#!
  
#*Standing Genetic Variation and the Evolution of Drug Resistance in HIV.
#@Pleuni Simone Pennings
#t2012
#cPLoS Computational Biology
#index3461564
#% 
#!
  
#*Network Topologies and Dynamics Leading to Endotoxin Tolerance and Priming in Innate Immune Cells.
#@Yan Fu,Trevor Glaros,Meng Zhu,Ping Wang,Zhanghan Wu,John J. Tyson,Liwu Li,Jianhua Xing
#t2012
#cPLoS Computational Biology
#index3461589
#% 
#!
  
#*Combining the Finite Element Method with Structural Connectome-based Analysis for Modeling Neurotrauma: Connectome Neurotrauma Mechanics.
#@Reuben H. Kraft,Phillip Justin Mckee,Amy M. Dagro,Scott T. Grafton
#t2012
#cPLoS Computational Biology
#index3461612
#% 
#!
  
#*Microbial Co-occurrence Relationships in the Human Microbiome.
#@Karoline Faust,Jarupon Fah Sathirapongsasuti,Jacques Izard,Nicola Segata,Dirk Gevers,Jeroen Raes,Curtis Huttenhower
#t2012
#cPLoS Computational Biology
#index3461561
#% 
#!
  
#*Coupling Mechanical Deformations and Planar Cell Polarity to Create Regular Patterns in the Zebrafish Retina.
#@Guillaume Salbreux,Linda K. Barthel,Pamela A. Raymond,David K. Lubensky
#t2012
#cPLoS Computational Biology
#index3461590
#% 
#!
  
#*Modeling Boundary Vector Cell Firing Given Optic Flow as a Cue.
#@Florian Raudies,Michael E. Hasselmo
#t2012
#cPLoS Computational Biology
#index3461545
#% 
#!
  
#*The Generation of Phase Differences and Frequency Changes in a Network Model of Inferior Olive Subthreshold Oscillations.
#@Benjamin Torben-Nielsen,Idan Segev,Yosef Yarom
#t2012
#cPLoS Computational Biology
#index3461528
#% 
#!
  
#*GDP Release Preferentially Occurs on the Phosphate Side in Heterotrimeric G-proteins.
#@Maxime Louet,Jean Martinez,Nicolas Floquet
#t2012
#cPLoS Computational Biology
#index3461468
#% 
#!
  
#*Ten Simple Rules for Online Learning.
#@David B. Searls
#t2012
#cPLoS Computational Biology
#index3461484
#% 
#!
  
#*Dynamic Prestress in a Globular Protein.
#@Scott A. Edwards,Johannes Wagner,Frauke Gräter
#t2012
#cPLoS Computational Biology
#index3461521
#% 
#!
  
#*Interplay of Gene Expression Noise and Ultrasensitive Dynamics Affects Bacterial Operon Organization.
#@J. Christian J. Ray,Oleg A. Igoshin
#t2012
#cPLoS Computational Biology
#index3461491
#% 
#!
  
#*Bringing Molecules Back into Molecular Evolution.
#@Claus O. Wilke
#t2012
#cPLoS Computational Biology
#index3461503
#% 
#!
  
#*An Online Bioinformatics Curriculum.
#@David B. Searls
#t2012
#cPLoS Computational Biology
#index3461583
#% 
#!
  
#*Weighted Frequent Gene Co-expression Network Mining to Identify Genes Involved in Genome Stability.
#@Jie Zhang,Kewei Lu,Yang Xiang,Muhtadi Islam,Shweta Kotian,Zeina Kais,Cindy Lee,Mansi Arora,Hui-wen Liu,Jeffrey D. Parvin,Kun Huang
#t2012
#cPLoS Computational Biology
#index3461546
#% 
#!
  
#*A Novel Computational Method Identifies Intra- and Inter-Species Recombination Events in and .
#@Lisa Sanguinetti,Simona Toti,Valerio Reguzzi,Fabio Bagnoli,Claudio Donati
#t2012
#cPLoS Computational Biology
#index3461509
#% 
#!
  
#*Quantifying and Analyzing the Network Basis of Genetic Complexity.
#@Ethan G. Thompson,Timothy Galitski
#t2012
#cPLoS Computational Biology
#index3461571
#% 
#!
  
#*A Model-Based Bayesian Estimation of the Rate of Evolution of VNTR Loci in .
#@R. Zachariah Aandahl,Josephine F. Reyes,Scott A. Sisson,Mark M. Tanaka
#t2012
#cPLoS Computational Biology
#index3461601
#% 
#!
  
#*Artificial Neural Networks Trained to Detect Viral and Phage Structural Proteins.
#@Victor Seguritan,Nelson Alves Jr.,Michael Arnoult,Amy Raymond,Don Lorimer,Alex B. Burgin Jr.,Peter Salamon,Anca M. Segall
#t2012
#cPLoS Computational Biology
#index3461465
#% 
#!
  
#*Contact and Deformation Modeling for Interactive Environments.
#@Qi Luo,Jing Xiao
#t2007
#cIEEE Transactions on Robotics
#index1177557
#% 
#!
  
#*Distributed Diagnosis in Formations of Mobile Robots.
#@Matthew J. Daigle,Xenofon D. Koutsoukos,Gautam Biswas
#t2007
#cIEEE Transactions on Robotics
#index1177558
#% 
#!
  
#*Investigation of Motion Guidance With Scooter Cobot and Collaborative Learning.
#@Eng Seng Boy,Etienne Burdet,Chee Leong Teo,James Edward Colgate
#t2007
#cIEEE Transactions on Robotics
#index1177559
#% 
#!
  
#*Control and Stability Analysis of Limit Cycles in a Hopping Robot.
#@Mojtaba Ahmadi,Hannah Michalska,Martin Buehler
#t2007
#cIEEE Transactions on Robotics
#index1177560
#% 
#!
  
#*"Communication to: A Closed-Form Expression for the Uncertainty in Odometry Position Estimate of an Autonomous Vehicle".
#@Josep Maria Mirats i Tur,Carlos Albores-Borja,José Luis Gordillo
#t2007
#cIEEE Transactions on Robotics
#index1177561
#% 
#!
  
#*Temporal Logic Planning and Control of Robotic Swarms by Hierarchical Abstractions.
#@Marius Kloetzer,Calin Belta
#t2007
#cIEEE Transactions on Robotics
#index1177562
#% 
#!
  
#*Haptic Display of Constrained Dynamic Systems via Admittance Displays.
#@Eric L. Faulring,Kevin M. Lynch,J. Edward Colgate,Michael A. Peshkin
#t2007
#cIEEE Transactions on Robotics
#index1177563
#% 
#!
  
#*A Geometric Theory for Analysis and Synthesis of Sub-6 DoF Parallel Manipulators.
#@Jian Meng,Guanfeng Liu,Zexiang Li
#t2007
#cIEEE Transactions on Robotics
#index1177564
#% 
#!
  
#*Accelerating Robot Development Through Integral Analysis of Human-Robot Interaction.
#@Tijn Kooijmans,Takayuki Kanda,Christoph Bartneck,Hiroshi Ishiguro,Norihiro Hagita
#t2007
#cIEEE Transactions on Robotics
#index1177565
#% 
#!
  
#*SC-KF Mobile Robot Localization: A Stochastic Cloning Kalman Filter for Processing Relative-State Measurements.
#@Anastasios I. Mourikis,Stergios I. Roumeliotis,Joel W. Burdick
#t2007
#cIEEE Transactions on Robotics
#index1177566
#% 
#!
  
#*Rhythmic Feedback Control of a Blind Planar Juggler.
#@Renaud Ronsse,Philippe Lefèvre,Rodolphe Sepulchre
#t2007
#cIEEE Transactions on Robotics
#index1177567
#% 
#!
  
#*Supervisory Fault Adaptive Control of a Mobile Robot and Its Application in Sensor-Fault Accommodation.
#@M. Ji,N. Sarkar
#t2007
#cIEEE Transactions on Robotics
#index1177568
#% 
#!
  
#*Sliding-Mode Formation Control for Underactuated Surface Vessels.
#@Farbod Fahimi
#t2007
#cIEEE Transactions on Robotics
#index1177569
#% 
#!
  
#*Image-Guided Robotic Flexible Needle Steering.
#@Daniel Glozman,Moshe Shoham
#t2007
#cIEEE Transactions on Robotics
#index1177570
#% 
#!
  
#*Polychaete-Like Undulatory Robotic Locomotion in Unstructured Substrates.
#@Gianni La Spina,Michael Sfakiotakis,Dimitris P. Tsakiris,Arianna Menciassi,Paolo Dario
#t2007
#cIEEE Transactions on Robotics
#index1177571
#% 
#!
  
#*Distance-Optimal Navigation in an Unknown Environment Without Sensing Distances.
#@Benjamín Tovar,Rafael Murrieta-Cid,Steven M. LaValle
#t2007
#cIEEE Transactions on Robotics
#index1177572
#% 
#!
  
#*Gesture Spotting and Recognition for Human-Robot Interaction.
#@Hee-Deok Yang,A-Yeon Park,Seong-Whan Lee
#t2007
#cIEEE Transactions on Robotics
#index1177573
#% 
#!
  
#*A Novel Six Degrees-of-Freedom Parallel Robot for MEMS Fabrication.
#@Hagay Bamberger,Moshe Shoham
#t2007
#cIEEE Transactions on Robotics
#index1177574
#% 
#!
  
#*Propulsion Method for Swimming Microrobots.
#@Gábor Kósa,Moshe Shoham,Menashe Zaaroor
#t2007
#cIEEE Transactions on Robotics
#index1177575
#% 
#!
  
#*A Simple and Systematic Approach to Assigning Denavit-Hartenberg Parameters.
#@Peter I. Corke
#t2007
#cIEEE Transactions on Robotics
#index1177576
#% 
#!
  
#*Adaptive Identification on the Group of Rigid-Body Rotations and its Application to Underwater Vehicle Navigation.
#@James C. Kinsey,Louis L. Whitcomb
#t2007
#cIEEE Transactions on Robotics
#index1177577
#% 
#!
  
#*Biomimetic Sonar System Performing Spectrum-Based Localization.
#@Jonas Reijniers,Herbert Peremans
#t2007
#cIEEE Transactions on Robotics
#index1177578
#% 
#!
  
#*Evolved and Designed Self-Reproducing Modular Robotics.
#@Viktor Zykov,Efstathios Mytilinaios,Mark Desnoyer,Hod Lipson
#t2007
#cIEEE Transactions on Robotics
#index1177579
#% 
#!
  
#*Stochastic Event Capture Using Mobile Sensors Subject to a Quality Metric.
#@Nabhendra Bisnik,Alhussein A. Abouzeid,Volkan Isler
#t2007
#cIEEE Transactions on Robotics
#index1177580
#% 
#!
  
#*A Control Approach Based on Passive Behavior to Enhance User Interaction.
#@Oscar Chuy,Yasuhisa Hirata,Zhi Dong Wang,Kazuhiro Kosuge
#t2007
#cIEEE Transactions on Robotics
#index1177581
#% 
#!
  
#*Incremental Building of a Polyhedral Feature Model for Programming by Human Demonstration of Force-Controlled Tasks.
#@Peter Slaets,Tine Lefebvre,Johan Rutgeerts,Herman Bruyninckx,Joris De Schutter
#t2007
#cIEEE Transactions on Robotics
#index1177582
#% 
#!
  
#*Partial Derivatives of the Inverse Mass Matrix of Multibody Systems via Its Factorization.
#@A. Muller
#t2007
#cIEEE Transactions on Robotics
#index1177583
#% 
#!
  
#*Enabling Multimodal Human-Robot Interaction for the Karlsruhe Humanoid Robot.
#@Rainer Stiefelhagen,Hazim Kemal Ekenel,Christian Fügen,Petra Gieselmann,Hartwig Holzapfel,Florian Kraft,Kai Nickel,Michael Voit,Alex Waibel
#t2007
#cIEEE Transactions on Robotics
#index1177584
#% 
#!
  
#*Convergence and Consistency Analysis for Extended Kalman Filter Based SLAM.
#@Shoudong Huang,Gamini Dissanayake
#t2007
#cIEEE Transactions on Robotics
#index1177585
#% 
#!
  
#*Virtual-Holonomic-Constraints-Based Design of Stable Oscillations of Furuta Pendulum: Theory and Experiments.
#@Anton S. Shiriaev,Leonid B. Freidovich,Anders Robertsson,Rolf Johansson,Anders Sandberg
#t2007
#cIEEE Transactions on Robotics
#index1177586
#% 
#!
  
#*Surface-Tension-Driven Biologically Inspired Water Strider Robots: Theory and Experiments.
#@Yun Seong Song,Metin Sitti
#t2007
#cIEEE Transactions on Robotics
#index1177587
#% 
#!
  
#*Six-Axis Magnetic Levitation and Motion Control.
#@Zhipeng Zhang,Chia-Hsiang Menq
#t2007
#cIEEE Transactions on Robotics
#index1177588
#% 
#!
  
#*Convex Optimization Strategies for Coordinating Large-Scale Robot Formations.
#@Jason C. Derenick,John R. Spletzer
#t2007
#cIEEE Transactions on Robotics
#index1177589
#% 
#!
  
#*Geometric Optimization of Relative Link Lengths for Biomimetic Robotic Fish.
#@Junzhi Yu,Long Wang,Min Tan
#t2007
#cIEEE Transactions on Robotics
#index1177590
#% 
#!
  
#*P-SLAM: Simultaneous Localization and Mapping With Environmental-Structure Prediction.
#@H. Jacky Chang,C. S. George Lee,Yung-Hsiang Lu,Y. Charlie Hu
#t2007
#cIEEE Transactions on Robotics
#index1177591
#% 
#!
  
#*Flagged Parallel Manipulators.
#@Maria Alberich-Carramiñana,Federico Thomas,Carme Torras
#t2007
#cIEEE Transactions on Robotics
#index1177592
#% 
#!
  
#*Landing Force Control for Humanoid Robot by Time-Domain Passivity Approach.
#@Yong-Duk Kim,Bum-Joo Lee,Jee-Hwan Ryu,Jong-Hwan Kim
#t2007
#cIEEE Transactions on Robotics
#index1177593
#% 
#!
  
#*Image-Based Visual Servoing for Nonholonomic Mobile Robots Using Epipolar Geometry.
#@Gian Luca Mariottini,Giuseppe Oriolo,Domenico Prattichizzo
#t2007
#cIEEE Transactions on Robotics
#index1177594
#% 
#!
  
#*Contact-State Segmentation Using Particle Filters for Programming by Human Demonstration in Compliant-Motion Tasks.
#@Wim Meeussen,Johan Rutgeerts,Klaas Gadeyne,Herman Bruyninckx,Joris De Schutter
#t2007
#cIEEE Transactions on Robotics
#index1177595
#% 
#!
  
#*Approximate Algorithms for a Collaboratively Controlled Robotic Camera.
#@Dezhen Song,Kenneth Y. Goldberg
#t2007
#cIEEE Transactions on Robotics
#index1177596
#% 
#!
  
#*Improving Motion-Planning Algorithms by Efficient Nearest-Neighbor Searching.
#@Anna Yershova,Steven M. LaValle
#t2007
#cIEEE Transactions on Robotics
#index1177597
#% 
#!
  
#*Global Path-Planning for Constrained and Optimal Visual Servoing.
#@Graziano Chesi,Yeung Sam Hung
#t2007
#cIEEE Transactions on Robotics
#index1177598
#% 
#!
  
#*Modifiable Walking Pattern of a Humanoid Robot by Using Allowable ZMP Variation.
#@Bum-Joo Lee,Daniel Stonier,Yong-Duk Kim,Jeong-Ki Yoo,Jong-Hwan Kim
#t2008
#cIEEE Transactions on Robotics
#index1177599
#% 
#!
  
#*MIMO Output Estimation With Reduced Multirate Sampling for Real-Time Haptic Rendering.
#@Kyungno Lee,Doo Yong Lee
#t2007
#cIEEE Transactions on Robotics
#index1177600
#% 
#!
  
#*Closing the Loop With Graphical SLAM.
#@John Folkesson,Henrik I. Christensen
#t2007
#cIEEE Transactions on Robotics
#index1177601
#% 
#!
  
#*Uniform Bounds of the Coriolis/Centripetal Matrix of Serial Robot Manipulators.
#@Juan Ignacio Mulero Martínez
#t2007
#cIEEE Transactions on Robotics
#index1177602
#% 
#!
  
#*Robust PD Control Using Adaptive Compensation for Completely Restrained Parallel-Wire Driven Robots: Translational Systems Using the Minimum Number of Wires Under Zero-Gravity Condition.
#@Hitoshi Kino,Toshiaki Yahiro,F. Takemura,T. Morizono
#t2007
#cIEEE Transactions on Robotics
#index1177603
#% 
#!
  
#*Robust Recognition of Simultaneous Speech by a Mobile Robot.
#@Jean-Marc Valin,Seiichi Yamamoto,Jean Rouat,François Michaud,Kazuhiro Nakadai,Hiroshi G. Okuno
#t2007
#cIEEE Transactions on Robotics
#index1177604
#% 
#!
  
#*Intelligent Control Algorithms for Robotic-Assisted Beating Heart Surgery.
#@Ozkan Bebek,Murat Cenk Cavusoglu
#t2007
#cIEEE Transactions on Robotics
#index1177605
#% 
#!
  
#*Fast Computation of Optimal Contact Forces.
#@Stephen P. Boyd,Ben Wegbreit
#t2007
#cIEEE Transactions on Robotics
#index1177606
#% 
#!
  
#*Identifying Predictive Metrics for Supervisory Control of Multiple Robots.
#@Jacob W. Crandall,M. L. Cummings
#t2007
#cIEEE Transactions on Robotics
#index1177607
#% 
#!
  
#*A Formal-Numerical Approach for Robust In-Workspace Singularity Detection.
#@Jean-Pierre Merlet
#t2007
#cIEEE Transactions on Robotics
#index1177608
#% 
#!
  
#*The Design and Analysis of an Efficient Local Algorithm for Coverage and Exploration Based on Sensor Network Deployment.
#@Maxim A. Batalin,Gaurav S. Sukhatme
#t2007
#cIEEE Transactions on Robotics
#index1177609
#% 
#!
  
#*Modelless Guidance for the Docking of Autonomous Vehicles.
#@Goldie Nejat,Beno Benhabib
#t2007
#cIEEE Transactions on Robotics
#index1177610
#% 
#!
  
#*Complementary Stability and Loop Shaping for Improved Human-Robot Interaction.
#@Stephen P. Buerger,Neville Hogan
#t2007
#cIEEE Transactions on Robotics
#index1177611
#% 
#!
  
#*Modeling Magnetic Torque and Force for Controlled Manipulation of Soft-Magnetic Bodies.
#@Jake J. Abbott,Olgaç Ergeneman,Michael P. Kummer,Ann M. Hirt,Bradley J. Nelson
#t2007
#cIEEE Transactions on Robotics
#index1177612
#% 
#!
  
#*Ecological Interfaces for Improving Mobile Robot Teleoperation.
#@Curtis W. Nielsen,Michael A. Goodrich,Robert W. Ricks
#t2007
#cIEEE Transactions on Robotics
#index1177613
#% 
#!
  
#*Real-Time Target Tracking for Autonomous UAVs in Adversarial Environments: A Gradient Search Algorithm.
#@Ugur Zengin,Atilla Dogan
#t2007
#cIEEE Transactions on Robotics
#index1177614
#% 
#!
  
#*Modeling of Viscoelastic Contacts and Evolution of Limit Surface for Robotic Contact Interface.
#@Paolo Tiezzi,Imin Kao
#t2007
#cIEEE Transactions on Robotics
#index1177615
#% 
#!
  
#*Multiobjective Evolution of Neural Controllers and Task Complexity.
#@Genci Capi
#t2007
#cIEEE Transactions on Robotics
#index1177616
#% 
#!
  
#*A Disturbance Rejection Measure for Limit Cycle Walkers: The Gait Sensitivity Norm.
#@Daan G. E. Hobbelen,Martijn Wisse
#t2007
#cIEEE Transactions on Robotics
#index1177617
#% 
#!
  
#*Port-Based Modeling of a Flexible Link.
#@Alessandro Macchelli,Claudio Melchiorri,Stefano Stramigioli
#t2007
#cIEEE Transactions on Robotics
#index1177618
#% 
#!
  
#*Dynamic Capturing Strategy for a 2-D Stick-Shaped Object Based on Friction Independent Collision.
#@Mitsuru Higashimori,Maiko Kimura,Idaku Ishii,Makoto Kaneko
#t2007
#cIEEE Transactions on Robotics
#index1177619
#% 
#!
  
#*Spatial Motion Constraints Using Virtual Fixtures Generated by Anatomy.
#@Ming Li,Masaru Ishii,Russell H. Taylor
#t2007
#cIEEE Transactions on Robotics
#index1177620
#% 
#!
  
#*Incremental Convex Minimization for Computing Collision Translations of Convex Polyhedra.
#@Claudio Mirolo,Stefano Carpin,Enrico Pagello
#t2007
#cIEEE Transactions on Robotics
#index1177621
#% 
#!
  
#*Convex Optimization Algorithms for Active Balancing of Humanoid Robots.
#@Juyong Park,Jaeyoung Haan,F. C. Park
#t2007
#cIEEE Transactions on Robotics
#index1177622
#% 
#!
  
#*Simultaneous Localization and Map Building Using the Probabilistic Multi-Hypothesis Tracker.
#@S. J. Davey
#t2007
#cIEEE Transactions on Robotics
#index1177623
#% 
#!
  
#*The M-Space Feature Representation for SLAM.
#@John Folkesson,Patric Jensfelt,Henrik I. Christensen
#t2007
#cIEEE Transactions on Robotics
#index1177624
#% 
#!
  
#*Motion Control of Passive Intelligent Walker Using Servo Brakes.
#@Yasuhisa Hirata,Asami Hara,Kazuhiro Kosuge
#t2007
#cIEEE Transactions on Robotics
#index1177625
#% 
#!
  
#*Wave-Based Analysis and Control of Lump-Modeled Flexible Robots.
#@William J. O'Connor
#t2007
#cIEEE Transactions on Robotics
#index1177626
#% 
#!
  
#*Task Sequencing for High-Level Sensor-Based Control.
#@Nicolas Mansard,François Chaumette
#t2007
#cIEEE Transactions on Robotics
#index1177627
#% 
#!
  
#*Controllability and Posture Control of a Wheeled Pendulum Moving on an Inclined Plane.
#@Danielle Sami Nasrallah,Hannah Michalska,Jorge Angeles
#t2007
#cIEEE Transactions on Robotics
#index1177628
#% 
#!
  
#*Full-Body Compliant Human-Humanoid Interaction: Balancing in the Presence of Unknown External Forces.
#@Sang-Ho Hyon,Joshua G. Hale,Gordon Cheng
#t2007
#cIEEE Transactions on Robotics
#index1177629
#% 
#!
  
#*Swing-Up Control for a 3-DOF Gymnastic Robot With Passive First Joint: Design and Analysis.
#@Xin Xin,Masahiro Kaneda
#t2007
#cIEEE Transactions on Robotics
#index1177630
#% 
#!
  
#*Decentralized Cooperative Policy for Conflict Resolution in Multivehicle Systems.
#@Lucia Pallottino,Vincenzo Giovanni Scordio,Antonio Bicchi,Emilio Frazzoli
#t2007
#cIEEE Transactions on Robotics
#index1177631
#% 
#!
  
#*Occam's Razor Applied to Network Topology Inference.
#@Dimitri Marinakis,Gregory Dudek
#t2008
#cIEEE Transactions on Robotics
#index1177632
#% 
#!
  
#*A Natural Saturating Extension of the PD-With-Desired-Gravity-Compensation Control Law for Robot Manipulators With Bounded Inputs.
#@Arturo Zavala-Río,Víctor Santibáñez
#t2007
#cIEEE Transactions on Robotics
#index1177633
#% 
#!
  
#*An Efficient Algorithm for Grasp Synthesis and Fixture Layout Design in Discrete Domain.
#@Xiangyang Zhu,Han Ding
#t2007
#cIEEE Transactions on Robotics
#index1177634
#% 
#!
  
#*High-Resolution Ultrasonic Environment Imaging.
#@D. Bank,T. Kampke
#t2007
#cIEEE Transactions on Robotics
#index1177635
#% 
#!
  
#*Whole-Body Motion Generation Integrating Operator's Intention and Robot's Autonomy in Controlling Humanoid Robots.
#@Ee Sian Neo,Kazuhito Yokoi,Shuuji Kajita,Kazuo Tanie
#t2007
#cIEEE Transactions on Robotics
#index1177636
#% 
#!
  
#*A Two-Month Field Trial in an Elementary School for Long-Term Human-Robot Interaction.
#@Takayuki Kanda,Rumi Sato,Naoki Saiwaki,Hiroshi Ishiguro
#t2007
#cIEEE Transactions on Robotics
#index1177637
#% 
#!
  
#*TIKL: Development of a Wearable Vibrotactile Feedback Suit for Improved Human Motor Learning.
#@Jeff Lieberman,Cynthia Breazeal
#t2007
#cIEEE Transactions on Robotics
#index1177638
#% 
#!
  
#*A Linear Affect-Expression Space Model and Control Points for Mascot-Type Facial Robots.
#@Hui Sung Lee,Jeong Woo Park,Myung Jin Chung
#t2007
#cIEEE Transactions on Robotics
#index1177639
#% 
#!
  
#*Pushing a Disk Using Compliance.
#@Dennis Nieuwenhuisen,A. Frank van der Stappen,Mark H. Overmars
#t2007
#cIEEE Transactions on Robotics
#index1177640
#% 
#!
  
#*Singularity-Free Dynamic Equations of Open-Chain Mechanisms With General Holonomic and Nonholonomic Joints.
#@Vincent Duindam,Stefano Stramigioli
#t2008
#cIEEE Transactions on Robotics
#index1177641
#% 
#!
  
#*Cost-Based Anticipatory Action Selection for Human-Robot Fluency.
#@Guy Hoffman,Cynthia Breazeal
#t2007
#cIEEE Transactions on Robotics
#index1177642
#% 
#!
  
#*Capillary Force Disturbances on a Partially Submerged Cylindrical Micromanipulator.
#@Michaël Gauthier,Mourad Nourine
#t2007
#cIEEE Transactions on Robotics
#index1177643
#% 
#!
  
#*A Human Aware Mobile Robot Motion Planner.
#@Emrah Akin Sisbot,Luis F. Marin-Urias,Rachid Alami,Thierry Siméon
#t2007
#cIEEE Transactions on Robotics
#index1177644
#% 
#!
  
#*Design and Control of Five-Fingered Haptic Interface Opposite to Human Hand.
#@Haruhisa Kawasaki,Tetsuya Mouri
#t2007
#cIEEE Transactions on Robotics
#index1177645
#% 
#!
  
#*Corrections to "Dynamic Modeling and Experimental Validation for Interactive Endodontic Simulation" [Jun 07 443-458].
#@Min Li,Yun-Hui Liu
#t2007
#cIEEE Transactions on Robotics
#index1177646
#% 
#!
  
#*A Neural Network Controller for Continuum Robots.
#@David Braganza,Darren M. Dawson,Ian D. Walker,Nitendra Nath
#t2007
#cIEEE Transactions on Robotics
#index1177647
#% 
#!
  
#*Distributed Coordination Control of Multiagent Systems While Preserving Connectedness.
#@Meng Ji,Magnus Egerstedt
#t2007
#cIEEE Transactions on Robotics
#index1177648
#% 
#!
  
#*A New Family of Two-Wheeled Mobile Robots: Modeling and Controllability.
#@Alessio Salerno,Jorge Angeles
#t2007
#cIEEE Transactions on Robotics
#index1177649
#% 
#!
  
#*Inverse Kinematics of 7-DOF Robots and Limbs by Decomposition and Approximation.
#@Mahmoud Tarokh,Mikyung Kim
#t2007
#cIEEE Transactions on Robotics
#index1177650
#% 
#!
  
#*Affective State Estimation for Human-Robot Interaction.
#@Dana Kulic,Elizabeth A. Croft
#t2007
#cIEEE Transactions on Robotics
#index1177651
#% 
#!
  
#*Living With Seal Robots - Its Sociopsychological and Physiological Influences on the Elderly at a Care House.
#@Kazuyoshi Wada,Takanori Shibata
#t2007
#cIEEE Transactions on Robotics
#index1177652
#% 
#!
  
#*Stable Visual Servoing Through Hybrid Switched-System Control.
#@Nicholas R. Gans,Seth Hutchinson
#t2007
#cIEEE Transactions on Robotics
#index1177653
#% 
#!
  
#*Quantitative Comparison of Bilateral Teleoperation Systems Using µ-Synthesis.
#@Keehoon Kim,Murat Cenk Cavusoglu,Wan Kyun Chung
#t2007
#cIEEE Transactions on Robotics
#index1177654
#% 
#!
  
#*Image Stabilization for In Vivo Microscopy by High-Speed Visual Feedback Control.
#@Sungon Lee,Yoshihiko Nakamura,Katsu Yamane,T. Toujo,S. Takahashi,Y. Tanikawa,H. Takahashi
#t2008
#cIEEE Transactions on Robotics
#index1177655
#% 
#!
  
#*Posture/Walking Control for Humanoid Robot Based on Kinematic Resolution of CoM Jacobian With Embedded Motion.
#@Youngjin Choi,Doik Kim,Yonghwan Oh,Bum-Jae You
#t2007
#cIEEE Transactions on Robotics
#index1177656
#% 
#!
  
#*Cooperative Motion Control and Sensing Architecture in Compliant Framed Modular Mobile Robots.
#@Xiaorui Zhu,Youngshik Kim,Roy Merrell,Mark A. Minor
#t2007
#cIEEE Transactions on Robotics
#index1177657
#% 
#!
  
#*Potential Fields for Maintaining Connectivity of Mobile Networks.
#@Michael M. Zavlanos,George J. Pappas
#t2007
#cIEEE Transactions on Robotics
#index1177658
#% 
#!
  
#*Feasibility of Inductive Communication Between Millimeter-Sized Wireless Robots.
#@Sohee Kim,Thorsten Knoll,Oliver Scholz
#t2007
#cIEEE Transactions on Robotics
#index1177659
#% 
#!
  
#*Capturing a Convex Object With Three Discs.
#@Jeff Erickson,Shripad Thite,Fred Rothganger,Jean Ponce
#t2007
#cIEEE Transactions on Robotics
#index1177660
#% 
#!
  
#*Multirobot Formations Based on the Queue-Formation Scheme With Limited Communication.
#@Cheng-Heng Fua,Shuzhi Sam Ge,Khac Duc Do,Khiang Wee Lim
#t2007
#cIEEE Transactions on Robotics
#index1177661
#% 
#!
  
#*Localization With Limited Sensing.
#@Jason M. O'Kane,Steven M. LaValle
#t2007
#cIEEE Transactions on Robotics
#index1177662
#% 
#!
  
#*Guest Editorial Special Issue on Human-Robot Interaction.
#@Cecilia Laschi,Cynthia Breazeal,Yasushi Nakauchi
#t2007
#cIEEE Transactions on Robotics
#index1177663
#% 
#!
  
#*Dynamic Modeling and Experimental Validation for Interactive Endodontic Simulation.
#@Min Li,Yun-Hui Liu
#t2007
#cIEEE Transactions on Robotics
#index1177664
#% 
#!
  
#*Multimode Control of a Large-Scale Robotic Manipulator.
#@M. R. Kermani,Rajnikant V. Patel,Mehrdad Moallem
#t2007
#cIEEE Transactions on Robotics
#index1177665
#% 
#!
  
#*Friction Compensation for Enhancing Transparency of a Teleoperator With Compliant Transmission.
#@Mohsen Mahvash,Allison M. Okamura
#t2007
#cIEEE Transactions on Robotics
#index1177666
#% 
#!
  
#*Development of the Tactile Sensor System of a Human-Interactive Robot "RI-MAN".
#@Toshiharu Mukai,Masaki Onishi,Tadashi Odashima,Shinya Hirano,Zhi Wei Luo
#t2008
#cIEEE Transactions on Robotics
#index1177667
#% 
#!
  
#*Torque Distribution in a Six-Legged Robot.
#@Mustafa Suphi Erden,Kemal Leblebicioglu
#t2007
#cIEEE Transactions on Robotics
#index1177668
#% 
#!
  
#*Human-Oriented Interaction With an Anthropomorphic Robot.
#@Thorsten Spexard,Marc Hanheide,Gerhard Sagerer
#t2007
#cIEEE Transactions on Robotics
#index1177669
#% 
#!
  
#*Gyrobot: Control of Multiple Degree of Freedom Underactuated Mechanisms Using a Gyrating Link and Cyclic Braking.
#@James M. Gilbert
#t2007
#cIEEE Transactions on Robotics
#index1177670
#% 
#!
  
#*Dynamic Visual Tracking for Manipulators Using an Uncalibrated Fixed Camera.
#@Hesheng Wang,Yun-Hui Liu,Dongxiang Zhou
#t2007
#cIEEE Transactions on Robotics
#index1177671
#% 
#!
  
#*Region-Reaching Control of Robots.
#@Chien-Chern Cheah,De Qun Wang,Yeow Cheng Sun
#t2007
#cIEEE Transactions on Robotics
#index1177672
#% 
#!
  
#*Manipulation Planning for Deformable Linear Objects.
#@Mitul Saha,Pekka Isto
#t2007
#cIEEE Transactions on Robotics
#index1177673
#% 
#!
  
#*Geometric Methods for Modeling and Control of Free-Swimming Fin-Actuated Underwater Vehicles.
#@Kristi A. Morgansen,Benjamin I. Triplett,Daniel J. Klein
#t2007
#cIEEE Transactions on Robotics
#index1177674
#% 
#!
  
#*Vector Field Path Following for Miniature Air Vehicles.
#@Derek R. Nelson,D. Blake Barber,Timothy W. McLain,Randal W. Beard
#t2007
#cIEEE Transactions on Robotics
#index1177675
#% 
#!
  
#*Adding an Upper Body to Passive Dynamic Walking Robots by Means of a Bisecting Hip Mechanism.
#@Martijn Wisse,Daan G. E. Hobbelen,Arend L. Schwab
#t2007
#cIEEE Transactions on Robotics
#index1177676
#% 
#!
  
#*Landmark Selection for Task-Oriented Navigation.
#@Ronen Lerner,Ehud Rivlin,Ilan Shimshoni
#t2007
#cIEEE Transactions on Robotics
#index1177677
#% 
#!
  
#*mmb{eta}}-Splines for the Smooth Path Generation of Wheeled Mobile Robots.
#@Aurelio Piazzi,Corrado Guarino Lo Bianco,Massimo Romano
#t2007
#cIEEE Transactions on Robotics
#index1177678
#% 
#!
  
#*Position-Based Visual Servoing in Industrial Multirobot Cells Using a Hybrid Camera Configuration.
#@Vincenzo Lippiello,Bruno Siciliano,Luigi Villani
#t2007
#cIEEE Transactions on Robotics
#index1177679
#% 
#!
  
#*Improved Techniques for Grid Mapping With Rao-Blackwellized Particle Filters.
#@Giorgio Grisetti,Cyrill Stachniss,Wolfram Burgard
#t2007
#cIEEE Transactions on Robotics
#index1177680
#% 
#!
  
#*Practical Kinematics for Real-Time Implementation of Continuum Robots.
#@Bryan A. Jones,Ian D. Walker
#t2006
#cIEEE Transactions on Robotics
#index1177681
#% 
#!
  
#*A General Stance Stability Test Based on Stratified Morse Theory With Application to Quasi-Static Locomotion Planning.
#@Elon Rimon,Richard Mason,Joel W. Burdick,Yizhar Or
#t2008
#cIEEE Transactions on Robotics
#index1177682
#% 
#!
  
#*Force Feedback Benefit Depends on Experience in Multiple Degree of Freedom Robotic Surgery Task.
#@Christopher R. Wagner,Robert D. Howe
#t2007
#cIEEE Transactions on Robotics
#index1177683
#% 
#!
  
#*Neural-Network-Based Contact Force Observers for Haptic Applications.
#@Andrew C. Smith,Farid Mobasser,Keyvan Hashtrudi-Zaad
#t2006
#cIEEE Transactions on Robotics
#index1177684
#% 
#!
  
#*Sensor Planning for Mobile Robot Localization - A Hierarchical Approach Using a Bayesian Network and a Particle Filter.
#@Hongjun Zhou,Shigeyuki Sakane
#t2008
#cIEEE Transactions on Robotics
#index1177685
#% 
#!
  
#*An Automated Method to Calibrate Industrial Robots Using a Virtual Closed Kinematic Chain.
#@Chandra Sekhar Gatla,Ronald Lumia,John Wood,Gregory P. Starr
#t2007
#cIEEE Transactions on Robotics
#index1177686
#% 
#!
  
#*Distributed Manipulation of Flat Objects With Two Airflow Sinks.
#@Hyungpil Moon,Jonathan E. Luntz
#t2006
#cIEEE Transactions on Robotics
#index1177687
#% 
#!
  
#*Visual Tracking in Cluttered Environments Using the Visual Probabilistic Data Association Filter.
#@Cheng-Ming Huang,David Liu,Li-Chen Fu
#t2006
#cIEEE Transactions on Robotics
#index1177688
#% 
#!
  
#*Optimal Paths for Landmark-Based Navigation by Differential-Drive Vehicles With Field-of-View Constraints.
#@Sourabh Bhattacharya,Rafael Murrieta-Cid,Seth Hutchinson
#t2007
#cIEEE Transactions on Robotics
#index1177689
#% 
#!
  
#*A New Predictive Approach for Bilateral Teleoperation With Applications to Drive-by-Wire Systems.
#@Ya-Jun Pan,Carlos Canudas de Wit,Olivier Sename
#t2006
#cIEEE Transactions on Robotics
#index1177690
#% 
#!
  
#*Assembly Mode Changing in Parallel Mechanisms.
#@Hagay Bamberger,Alon Wolf,Moshe Shoham
#t2008
#cIEEE Transactions on Robotics
#index1177691
#% 
#!
  
#*Teleoperation of Mobile Robots With Time-Varying Delay.
#@Emanuel Slawiñski,Vicente A. Mut,José F. Postigo
#t2007
#cIEEE Transactions on Robotics
#index1177692
#% 
#!
  
#*Gravity-Balancing Leg Orthosis and Its Performance Evaluation.
#@Sai K. Banala,Sunil Kumar Agrawal,Abbas Fattah,Vijaya Krishnamoorthy,Wei-Li Hsu,John P. Scholz,Katherine Rudolph
#t2006
#cIEEE Transactions on Robotics
#index1177693
#% 
#!
  
#*Path Planning for Autonomous Underwater Vehicles.
#@Clément Pêtrès,Yan Pailhas,Pedro Patrón,Yvan R. Petillot,Jonathan Evans,David M. Lane
#t2007
#cIEEE Transactions on Robotics
#index1177694
#% 
#!
  
#*Unscented FastSLAM: A Robust and Efficient Solution to the SLAM Problem.
#@Chanki Kim,R. Sakthivel,Wan Kyun Chung
#t2008
#cIEEE Transactions on Robotics
#index1177695
#% 
#!
  
#*Norm-Optimal Iterative Learning Control Applied to Gantry Robots for Automation Applications.
#@James D. Ratcliffe,Paul L. Lewin,Eric Rogers,Jari J. Hätönen,David H. Owens
#t2006
#cIEEE Transactions on Robotics
#index1177696
#% 
#!
  
#*Visual Tracking in Cluttered Environments Using the Visual Probabilistic Data Association Filter.
#@Cheng-Ming Huang,David Liu,Li-Chen Fu
#t2006
#cIEEE Transactions on Robotics
#index1177697
#% 
#!
  
#*A Mechatronic Testbed for Revolute-Joint Prototypes of a Manipulator.
#@Farhad Aghili
#t2006
#cIEEE Transactions on Robotics
#index1177698
#% 
#!
  
#*Kinematic Control of Platoons of Autonomous Vehicles.
#@Gianluca Antonelli,Stefano Chiaverini
#t2006
#cIEEE Transactions on Robotics
#index1177699
#% 
#!
  
#*Modeling and Optimal Centralized Control of a Large-Size Robotic Population.
#@Dejan Milutinovic,Pedro U. Lima
#t2006
#cIEEE Transactions on Robotics
#index1177700
#% 
#!
  
#*Elastic Model of Deformable Fingertip for Soft-Fingered Manipulation.
#@Takahiro Inoue,Shinichi Hirai
#t2006
#cIEEE Transactions on Robotics
#index1177701
#% 
#!
  
#*Modeling and Control of a Small Autonomous Aircraft Having Two Tilting Rotors.
#@Farid Kendoul,Isabelle Fantoni,Rogelio Lozano
#t2006
#cIEEE Transactions on Robotics
#index1177702
#% 
#!
  
#*Autonomous Self-Assembly in Swarm-Bots.
#@Roderich Groß,Michael Bonani,Francesco Mondada,Marco Dorigo
#t2006
#cIEEE Transactions on Robotics
#index1177703
#% 
#!
  
#*Modeling and Control of a Small Autonomous Aircraft Having Two Tilting Rotors.
#@Farid Kendoul,Isabelle Fantoni,Rogelio Lozano
#t2006
#cIEEE Transactions on Robotics
#index1177704
#% 
#!
  
#*On the Improvement of Walking Performance in Natural Environments by a Compliant Adaptive Gait.
#@Elena Garcia,Pablo González de Santos
#t2006
#cIEEE Transactions on Robotics
#index1177705
#% 
#!
  
#*Model Predictive Control for Transparent Teleoperation Under Communication Time Delay.
#@Shahin Sirouspour,Ali Shahdi
#t2006
#cIEEE Transactions on Robotics
#index1177706
#% 
#!
  
#*Kinematic Control of Platoons of Autonomous Vehicles.
#@Gianluca Antonelli,Stefano Chiaverini
#t2006
#cIEEE Transactions on Robotics
#index1177707
#% 
#!
  
#*Admittance and Impedance Representations of Friction Based on Implicit Euler Integration.
#@Ryo Kikuuwe,Naoyuki Takesue,Akihito Sano,Hiromi Mochiyama,Hideo Fujimoto
#t2006
#cIEEE Transactions on Robotics
#index1177708
#% 
#!
  
#*Modeling and Optimal Centralized Control of a Large-Size Robotic Population.
#@Dejan Milutinovic,Pedro U. Lima
#t2006
#cIEEE Transactions on Robotics
#index1177709
#% 
#!
  
#*Elastic Model of Deformable Fingertip for Soft-Fingered Manipulation.
#@Takahiro Inoue,Shinichi Hirai
#t2006
#cIEEE Transactions on Robotics
#index1177710
#% 
#!
  
#*Exactly Sparse Delayed-State Filters for View-Based SLAM.
#@Ryan Eustice,Hanumant Singh,John J. Leonard
#t2006
#cIEEE Transactions on Robotics
#index1177711
#% 
#!
  
#*Design, Implementation, and Experimental Results of a Quaternion-Based Kalman Filter for Human Body Motion Tracking.
#@Yiaoping Yun,Eric R. Bachmann
#t2006
#cIEEE Transactions on Robotics
#index1177712
#% 
#!
  
#*Superposition Methods for Distributed Manipulation Using Quadratic Potential Force Fields.
#@Konstantinos Varsos,Jonathan E. Luntz
#t2006
#cIEEE Transactions on Robotics
#index1177713
#% 
#!
  
#*Mechanics, Dynamics, and Control of a Single-Input Aquatic Vehicle With Variable Coefficient of Lift.
#@Scott D. Kelly,Ramadev B. Hukkeri
#t2006
#cIEEE Transactions on Robotics
#index1177714
#% 
#!
  
#*A Mechatronic Testbed for Revolute-Joint Prototypes of a Manipulator.
#@Farhad Aghili
#t2006
#cIEEE Transactions on Robotics
#index1177715
#% 
#!
  
#*Unifying Kinematic Modeling, Identification, and Control of a Gough-Stewart Parallel Robot Into a Vision-Based Framework.
#@Nicolas Andreff,Philippe Martinet
#t2006
#cIEEE Transactions on Robotics
#index1177716
#% 
#!
  
#*Norm-Optimal Iterative Learning Control Applied to Gantry Robots for Automation Applications.
#@James D. Ratcliffe,Paul L. Lewin,Eric Rogers,Jari J. Hätönen,David H. Owens
#t2006
#cIEEE Transactions on Robotics
#index1177717
#% 
#!
  
#*An Investigation of the Intrinsic Force Sensing Capabilities of Continuum Robots.
#@Kai Xu,Nabil Simaan
#t2008
#cIEEE Transactions on Robotics
#index1177718
#% 
#!
  
#*Analysis and Experiments on the Force Capabilities of Centripetal-Force-Actuated Microrobotic Platforms.
#@P. Vartholomeos,Evangelos Papadopoulos
#t2008
#cIEEE Transactions on Robotics
#index1177719
#% 
#!
  
#*Models for the Design of Bioinspired Robot Eyes.
#@Giorgio Cannata,Marco Maggiali
#t2008
#cIEEE Transactions on Robotics
#index1177720
#% 
#!
  
#*A Relational Positioning Methodology for Robot Task Specification and Execution.
#@Adolfo Rodriguez,Luis Basañez,Enric Celaya
#t2008
#cIEEE Transactions on Robotics
#index1177721
#% 
#!
  
#*Comparing Insect-Inspired Chemical Plume Tracking Algorithms Using a Mobile Robot.
#@David J. Harvey,Tien-Fu Lu,Michael A. Keller
#t2008
#cIEEE Transactions on Robotics
#index1177722
#% 
#!
  
#*The First Takeoff of a Biologically Inspired At-Scale Robotic Insect.
#@Robert J. Wood
#t2008
#cIEEE Transactions on Robotics
#index1177723
#% 
#!
  
#*A Complete and Scalable Strategy for Coordinating Multiple Robots Within Roadmaps.
#@Mike Peasgood,Christopher M. Clark,John McPhee
#t2008
#cIEEE Transactions on Robotics
#index1177724
#% 
#!
  
#*A Robust Docking Strategy for a Mobile Robot Using Flow Field Divergence.
#@Chris McCarthy,Nick Barnes,Robert E. Mahony
#t2008
#cIEEE Transactions on Robotics
#index1177725
#% 
#!
  
#*Dynamics of a High-Agility, Low-Power Imaging Payload.
#@Michele D. Carpenter,Mason A. Peck
#t2008
#cIEEE Transactions on Robotics
#index1177726
#% 
#!
  
#*Semantic Mapping Using Mobile Robots.
#@Denis F. Wolf,Gaurav S. Sukhatme
#t2008
#cIEEE Transactions on Robotics
#index1177727
#% 
#!
  
#*Motion Planning Algorithms for a Rolling Sphere With Limited Contact Area.
#@Mikhail M. Svinin,Shigeyuki Hosoe
#t2008
#cIEEE Transactions on Robotics
#index1177728
#% 
#!
  
#*On the Synthesis of Haptic Textures.
#@Gianni Campion,Vincent Hayward
#t2008
#cIEEE Transactions on Robotics
#index1177729
#% 
#!
  
#*Efficient Homography-Based Tracking and 3-D Reconstruction for Single-Viewpoint Sensors.
#@Christopher Mei,Selim Benhimane,Ezio Malis,Patrick Rives
#t2008
#cIEEE Transactions on Robotics
#index1177730
#% 
#!
  
#*Prediction of Human Behavior in Human--Robot Interaction Using Psychological Scales for Anxiety and Negative Attitudes Toward Robots.
#@Tatsuya Nomura,Takayuki Kanda,Tomohiro Suzuki,Kiyotaka Kato
#t2008
#cIEEE Transactions on Robotics
#index1177731
#% 
#!
  
#*A Human--Exoskeleton Interface Utilizing Electromyography.
#@Christian Fleischer,Günter Hommel
#t2008
#cIEEE Transactions on Robotics
#index1177732
#% 
#!
  
#*Toward a Natural Language Interface for Transferring Grasping Skills to Robots.
#@Maria Ralph,Medhat A. Moussa
#t2008
#cIEEE Transactions on Robotics
#index1177733
#% 
#!
  
#*Templates and Anchors for Antenna-Based Wall Following in Cockroaches and Robots.
#@J. Lee,S. N. Sponberg,Owen Y. Loh,Andrew G. Lamperski,Robert J. Full,Noah J. Cowan
#t2008
#cIEEE Transactions on Robotics
#index1177734
#% 
#!
  
#*Divide and Conquer: EKF SLAM in O(n).
#@Lina María Paz,Juan D. Tardós,José Neira
#t2008
#cIEEE Transactions on Robotics
#index1177735
#% 
#!
  
#*Swing-Leg Retraction for Limit Cycle Walkers Improves Disturbance Rejection.
#@Daan G. E. Hobbelen,Martijn Wisse
#t2008
#cIEEE Transactions on Robotics
#index1177736
#% 
#!
  
#*Principle of a Submerged Freeze Gripper for Microassembly.
#@Beatriz Lopez Walle,Michaël Gauthier,Nicolas Chaillet
#t2008
#cIEEE Transactions on Robotics
#index1177737
#% 
#!
  
#*A Dynamic-Model-Based Wheel Slip Detector for Mobile Robots on Outdoor Terrain.
#@Chris C. Ward,Karl Iagnemma
#t2008
#cIEEE Transactions on Robotics
#index1177738
#% 
#!
  
#*Adaptive Visual Servoing Using Point and Line Features With an Uncalibrated Eye-in-Hand Camera.
#@Hesheng Wang,Yun-Hui Liu,Dongxiang Zhou
#t2008
#cIEEE Transactions on Robotics
#index1177739
#% 
#!
  
#*A Globally Stable PD Controller for Bilateral Teleoperators.
#@Emmanuel Nuno,Romeo Ortega,Nikita Barabanov,Luis Basañez
#t2008
#cIEEE Transactions on Robotics
#index1177740
#% 
#!
  
#*Learning Object Affordances: From Sensory-Motor Coordination to Imitation.
#@Luis Montesano,Manuel Lopes,Alexandre Bernardino,José Santos-Victor
#t2008
#cIEEE Transactions on Robotics
#index1177741
#% 
#!
  
#*Toward a Unified Bayesian Approach to Hybrid Metric--Topological SLAM.
#@Jose-Luis Blanco,Juan-Antonio Fernandez-Madrigal,Javier Gonzalez
#t2008
#cIEEE Transactions on Robotics
#index1177742
#% 
#!
  
#*Optimization of Actuator Forces in Cable-Based Parallel Manipulators Using Convex Analysis.
#@Mahir Hassan,Amir Khajepour
#t2008
#cIEEE Transactions on Robotics
#index1177743
#% 
#!
  
#*A Wire-Based Active Tracker.
#@Juan Andrade-Cetto,Federico Thomas
#t2008
#cIEEE Transactions on Robotics
#index1177744
#% 
#!
  
#*Development of Soft-Actuator-Based Wearable Tactile Display.
#@Igmo Koo,Kwangmok Jung,Jachoon Koo,Jea-do Nam,Youngkwan Lee,Hyouk Ryeol Choi
#t2008
#cIEEE Transactions on Robotics
#index1177745
#% 
#!
  
#*Using Sensor Morphology for Multirobot Formations.
#@Gal A. Kaminka,Ruti Schechter-Glick,Vladimir Sadov
#t2008
#cIEEE Transactions on Robotics
#index1177746
#% 
#!
  
#*Modeling and Analysis of Skidding and Slipping in Wheeled Mobile Robots: Control Design Perspective.
#@Danwei Wang,Chang Boon Low
#t2008
#cIEEE Transactions on Robotics
#index1177747
#% 
#!
  
#*Online Affect Detection and Robot Behavior Adaptation for Intervention of Children With Autism.
#@Changchun Liu,Karla Conn,Nilanjan Sarkar,Wendy Stone
#t2008
#cIEEE Transactions on Robotics
#index1177748
#% 
#!
  
#*A Biologically Inspired Biped Locomotion Strategy for Humanoid Robots: Modulation of Sinusoidal Patterns by a Coupled Oscillator Model.
#@Jun Morimoto,Gen Endo,Jun Nakanishi,Gordon Cheng
#t2008
#cIEEE Transactions on Robotics
#index1177749
#% 
#!
  
#*A Robust Speech Recognition System for Communication Robots in Noisy Environments.
#@Carlos Toshinori Ishi,Shigeki Matsuda,Takayuki Kanda,Takatoshi Jitsuhiro,Hiroshi Ishiguro,Satoshi Nakamura,Norihiro Hagita
#t2008
#cIEEE Transactions on Robotics
#index1177750
#% 
#!
  
#*Experimentally Verified Optimal Serpentine Gait and Hyperredundancy of a Rigid-Link Snake Robot.
#@Vipul Mehta,Sean Brennan,Farhan Gandhi
#t2008
#cIEEE Transactions on Robotics
#index1177751
#% 
#!
  
#*Bioinspired Robotic Dual-Camera System for High-Resolution Vision.
#@Oliver Tonet,Francesco Focacci,Marco Piccigallo,Lorenza Mattei,Claudio Quaglia,Giuseppe Megali,Barbara Mazzolai,Paolo Dario
#t2008
#cIEEE Transactions on Robotics
#index1177752
#% 
#!
  
#*Discretization of a Continuous Curve.
#@Sean B. Andersson
#t2008
#cIEEE Transactions on Robotics
#index1177753
#% 
#!
  
#*An Optimality Principle Governing Human Walking.
#@Gustavo Arechavaleta,Jean-Paul Laumond,Halim Hicheur,Alain Berthoz
#t2008
#cIEEE Transactions on Robotics
#index1177754
#% 
#!
  
#*Sensor Fusion for Compliant Robot Motion Control.
#@J. G. Garcia,Anders Robertsson,Juan Gómez Ortega,Rolf Johansson
#t2008
#cIEEE Transactions on Robotics
#index1177755
#% 
#!
  
#*Decentralized Environmental Modeling by Mobile Sensor Networks.
#@Kevin M. Lynch,Ira B. Schwartz,Peng Yang,Randy A. Freeman
#t2008
#cIEEE Transactions on Robotics
#index1177756
#% 
#!
  
#*Dynamic Assignment in Distributed Motion Planning With Local Coordination.
#@Michael M. Zavlanos,George J. Pappas
#t2008
#cIEEE Transactions on Robotics
#index1177757
#% 
#!
  
#*Guest Editorial Special Issue on Biorobotics.
#@Paolo Dario,Blake Hannaford,Atsuo Takanishi
#t2008
#cIEEE Transactions on Robotics
#index1177758
#% 
#!
  
#*Turning Control of a Multilink Biomimetic Robotic Fish.
#@Junzhi Yu,Lizhong Liu,Long Wang,Min Tan,De Xu
#t2008
#cIEEE Transactions on Robotics
#index1177759
#% 
#!
  
#*Geometrically Exact Models for Soft Robotic Manipulators.
#@Deepak Trivedi,Amir Lotfi,Christopher D. Rahn
#t2008
#cIEEE Transactions on Robotics
#index1177760
#% 
#!
  
#*Fast and Incremental Method for Loop-Closure Detection Using Bags of Visual Words.
#@Adrien Angeli,David Filliat,Stéphane Doncieux,Jean-Arcady Meyer
#t2008
#cIEEE Transactions on Robotics
#index1177761
#% 
#!
  
#*Microautonomous Robotic Ostraciiform (MARCO): Hydrodynamics, Design, and Fabrication.
#@Parasar Kodati,Jonathan Hinkle,A. Winn,Xinyan Deng
#t2008
#cIEEE Transactions on Robotics
#index1177762
#% 
#!
  
#*Electrostatically Actuated Robotic Fish: Design and Control for High-Mobility Open-Loop Swimming.
#@Zu Guang Zhang,Norio Yamashita,Masahiko Gondo,Akio Yamamoto,Toshiro Higuchi
#t2008
#cIEEE Transactions on Robotics
#index1177763
#% 
#!
  
#*Smooth Vertical Surface Climbing With Directional Adhesion.
#@Sangbae Kim,Matthew Spenko,Salomon Trujillo,Barrett Heyneman,Daniel Santos,Mark R. Cutkosky
#t2008
#cIEEE Transactions on Robotics
#index1177764
#% 
#!
  
#*Secure Mobility and the Autonomous Driver.
#@K. McDowell,P. Nunez,S. Hutchins,J. S. Metcalfe
#t2008
#cIEEE Transactions on Robotics
#index1177765
#% 
#!
  
#*Adapting Robot Behavior for Human--Robot Interaction.
#@Noriaki Mitsunaga,C. Smith,Takayuki Kanda,Hiroshi Ishiguro,Norihiro Hagita
#t2008
#cIEEE Transactions on Robotics
#index1177766
#% 
#!
  
#*Editorial.
#@Alessandro De Luca
#t2008
#cIEEE Transactions on Robotics
#index1177767
#% 
#!
  
#*Navigation of Multiple Kinematically Constrained Robots.
#@Savvas G. Loizou,Kostas J. Kyriakopoulos
#t2008
#cIEEE Transactions on Robotics
#index1177768
#% 
#!
  
#*Transparency in Port-Hamiltonian-Based Telemanipulation.
#@Cristian Secchi,Stefano Stramigioli,Cesare Fantuzzi
#t2008
#cIEEE Transactions on Robotics
#index1177769
#% 
#!
  
#*Admittance Selection Conditions for Frictionless Force-Guided Assembly of Polyhedral Parts in Two Single-Point Principal Contacts.
#@Shuguang Huang,Joseph M. Schimmels
#t2008
#cIEEE Transactions on Robotics
#index1177770
#% 
#!
  
#*Effectiveness of Insect-Inspired Chemical Plume-Tracking Algorithms in a Shifting Wind Field.
#@David J. Harvey,Tien-Fu Lu,Michael A. Keller
#t2008
#cIEEE Transactions on Robotics
#index1177771
#% 
#!
  
#*A Fundamental Tradeoff Between Performance and Sensitivity Within Haptic Rendering.
#@Paul G. Griffiths,R. Brent Gillespie,James S. Freudenberg
#t2008
#cIEEE Transactions on Robotics
#index1177772
#% 
#!
  
#*Online Optimization of Swimming and Crawling in an Amphibious Snake Robot.
#@Alessandro Crespi,Auke Jan Ijspeert
#t2008
#cIEEE Transactions on Robotics
#index1177773
#% 
#!
  
#*Design and Development of the Lifting and Propulsion Mechanism for a Biologically Inspired Water Runner Robot.
#@Steven Floyd,Metin Sitti
#t2008
#cIEEE Transactions on Robotics
#index1177774
#% 
#!
  
#*Casting Manipulation - Midair Control of a Gripper by Impulsive Force.
#@Hitoshi Arisumi,Kazuhito Yokoi,Kiyoshi Komoriya
#t2008
#cIEEE Transactions on Robotics
#index1177775
#% 
#!
  
#*A Wireless Robotic Endoscope for Gastrointestine.
#@Kundong Wang,Guozheng Yan,Pingping Jiang,Dongdong Ye
#t2008
#cIEEE Transactions on Robotics
#index1177776
#% 
#!
  
#*Visual Servoing Based on Structure From Controlled Motion or on Robust Statistics.
#@Christophe Collewet,François Chaumette
#t2008
#cIEEE Transactions on Robotics
#index1177777
#% 
#!
  
#*Analysis of Humanoid Appearances in Human-Robot Interaction.
#@Takayuki Kanda,Takahiro Miyashita,Taku Osada,Yuji Haikawa,Hiroshi Ishiguro
#t2008
#cIEEE Transactions on Robotics
#index1177778
#% 
#!
  
#*Improving the Performance of Sampling-Based Motion Planning With Symmetry-Based Gap Reduction.
#@Peng Cheng,Emilio Frazzoli,Steven M. LaValle
#t2008
#cIEEE Transactions on Robotics
#index1177779
#% 
#!
  
#*Physical Path Planning Using a Pervasive Embedded Network.
#@Keith J. O'Hara,Daniel B. Walker,Tucker R. Balch
#t2008
#cIEEE Transactions on Robotics
#index1177780
#% 
#!
  
#*Catadioptric Visual Servoing From 3-D Straight Lines.
#@Hicham Hadj-Abdelkader,Youcef Mezouar,Philippe Martinet,François Chaumette
#t2008
#cIEEE Transactions on Robotics
#index1177781
#% 
#!
  
#*Testing Static Equilibrium for Legged Robots.
#@Timothy Bretl,Sanjay Lall
#t2008
#cIEEE Transactions on Robotics
#index1177782
#% 
#!
  
#*A Control Framework to Generate Nonenergy-Storing Virtual Fixtures: Use of Simulated Plasticity.
#@Ryo Kikuuwe,Naoyuki Takesue,Hideo Fujimoto
#t2008
#cIEEE Transactions on Robotics
#index1177783
#% 
#!
  
#*List of Reviewers.
#@A. A. De Luca
#t2008
#cIEEE Transactions on Robotics
#index1177784
#% 
#!
  
#*Robot-to-Robot Relative Pose Estimation From Range Measurements.
#@Xun S. Zhou,Stergios I. Roumeliotis
#t2008
#cIEEE Transactions on Robotics
#index1177785
#% 
#!
  
#*Energy-Efficient and High-Speed Dynamic Biped Locomotion Based on Principle of Parametric Excitation.
#@Fumihiko Asano,Zhi Wei Luo
#t2008
#cIEEE Transactions on Robotics
#index1177786
#% 
#!
  
#*A Minimalistic Approach to Appearance-Based Visual SLAM.
#@Henrik Andreasson,Tom Duckett,Achim J. Lilienthal
#t2008
#cIEEE Transactions on Robotics
#index1177787
#% 
#!
  
#*Sparse Local Submap Joining Filter for Building Large-Scale Maps.
#@Shoudong Huang,Zhan Wang,Gamini Dissanayake
#t2008
#cIEEE Transactions on Robotics
#index1177788
#% 
#!
  
#*Efficient View-Based SLAM Using Visual Loop Closures.
#@Ian Mahon,Stefan B. Williams,Oscar Pizarro,Matthew Johnson-Roberson
#t2008
#cIEEE Transactions on Robotics
#index1177789
#% 
#!
  
#*On the Passivity-Based Impedance Controlof Flexible Joint Robots.
#@Andreas Kugi,Christian Ott,Alin Albu-Schäffer,Gerd Hirzinger
#t2008
#cIEEE Transactions on Robotics
#index1177790
#% 
#!
  
#*An Efficient Direct Approach to Visual SLAM.
#@Geraldo F. Silveira,Ezio Malis,Patrick Rives
#t2008
#cIEEE Transactions on Robotics
#index1177791
#% 
#!
  
#*Disassembly Path Planning for Complex Articulated Objects.
#@Juan Cortés,Leonard Jaillet,Thierry Siméon
#t2008
#cIEEE Transactions on Robotics
#index1177792
#% 
#!
  
#*Attentional Landmarks and Active Gaze Control for Visual SLAM.
#@Simone Frintrop,Patric Jensfelt
#t2008
#cIEEE Transactions on Robotics
#index1177793
#% 
#!
  
#*A Practical Visual Servo Control for an Unmanned Aerial Vehicle.
#@Nicolas Guenard,Tarek Hamel,Robert E. Mahony
#t2008
#cIEEE Transactions on Robotics
#index1177794
#% 
#!
  
#*Gaussian Process Models for Indoor and Outdoor Sensor-Centric Robot Localization.
#@Alex Brooks,Alexei Makarenko,Ben Upcroft
#t2008
#cIEEE Transactions on Robotics
#index1177795
#% 
#!
  
#*Discovering Higher Level Structure in Visual SLAM.
#@Andrew P. Gee,Denis Chekhlov,Andrew Calway,Walterio W. Mayol-Cuevas
#t2008
#cIEEE Transactions on Robotics
#index1177796
#% 
#!
  
#*Decentralized Perimeter Surveillance Using a Team of UAVs.
#@Derek B. Kingston,Randal W. Beard,Ryan S. Holt
#t2008
#cIEEE Transactions on Robotics
#index1177797
#% 
#!
  
#*Design and Quasi-Static Locomotion Analysis of the Rolling Disk Biped Hybrid Robot.
#@Cristian C. Phipps,Benjamin E. Shores,Mark A. Minor
#t2008
#cIEEE Transactions on Robotics
#index1177798
#% 
#!
  
#*Planning 3-D Collision-Free Dynamic Robotic Motion Through Iterative Reshaping.
#@Eiichi Yoshida,Claudia Esteves,Igor R. Belousov,Jean-Paul Laumond,Takeshi Sakaguchi,Kazuhito Yokoi
#t2008
#cIEEE Transactions on Robotics
#index1177799
#% 
#!
  
#*Autonomous Image-Guided Robot-Assisted Active Catheter Insertion.
#@Jagadeesan Jayender,Mahdi Azizian,Rajnikant V. Patel
#t2008
#cIEEE Transactions on Robotics
#index1177800
#% 
#!
  
#*A New Kalman-Filter-Based Framework for Fast and Accurate Visual Tracking of Rigid Objects.
#@Youngrock Yoon,Akio Kosaka,Avinash C. Kak
#t2008
#cIEEE Transactions on Robotics
#index1177801
#% 
#!
  
#*A Gas-Actuated Anthropomorphic Prosthesis for Transhumeral Amputees.
#@Kevin Fite,Thomas J. Withrow,Xiangrong Shen,Keith W. Wait,Jason E. Mitchell,Michael Goldfarb
#t2008
#cIEEE Transactions on Robotics
#index1177802
#% 
#!
  
#*Advanced Programmed Motion Tracking Control of Nonholonomic Mechanical Systems.
#@Jarzebowska Jarzebowska
#t2008
#cIEEE Transactions on Robotics
#index1177803
#% 
#!
  
#*Fundamental Limitations on Designing Optimally Fault-Tolerant Redundant Manipulators.
#@Rodney G. Roberts,Hyun Geun Yu,Anthony A. Maciejewski
#t2008
#cIEEE Transactions on Robotics
#index1177804
#% 
#!
  
#*Proximity Queries Between Convex Objects: An Interior Point Approach for Implicit Surfaces.
#@Nilanjan Chakraborty,Jufeng Peng,Srinivas Akella,Jason E. Mitchell
#t2008
#cIEEE Transactions on Robotics
#index1177805
#% 
#!
  
#*Differentially Flat Designs of Underactuated Open-Chain Planar Robots.
#@Sunil Kumar Agrawal,Vivek Sangwan
#t2008
#cIEEE Transactions on Robotics
#index1177806
#% 
#!
  
#*Observer-Based Leader-Following Formation Control Using Onboard Sensor Information.
#@Tove Gustavi,Xiaoming Hu
#t2008
#cIEEE Transactions on Robotics
#index1177807
#% 
#!
  
#*On the Shared Control of an EMG-Controlled Prosthetic Hand: Analysis of User-Prosthesis Interaction.
#@Christian Cipriani,Franco Zaccone,Silvestro Micera,Maria Chiara Carrozza
#t2008
#cIEEE Transactions on Robotics
#index1177808
#% 
#!
  
#*Dynamical System Modulation for Robot Learning via Kinesthetic Demonstrations.
#@Micha Hersch,Florent Guenter,Sylvain Calinon,Aude Billard
#t2008
#cIEEE Transactions on Robotics
#index1177809
#% 
#!
  
#*Lower Extremity Exoskeletons and Active Orthoses: Challenges and State-of-the-Art.
#@Aaron M. Dollar,Hugh M. Herr
#t2008
#cIEEE Transactions on Robotics
#index1177810
#% 
#!
  
#*iSAM: Incremental Smoothing and Mapping.
#@Michael Kaess,Ananth Ranganathan,Frank Dellaert
#t2008
#cIEEE Transactions on Robotics
#index1177811
#% 
#!
  
#*Mechanics Modeling of Tendon-Driven Continuum Manipulators.
#@David B. Camarillo,C. F. Milne,Christopher R. Carlson,Michael Zinn,J. Kenneth Salisbury
#t2008
#cIEEE Transactions on Robotics
#index1177812
#% 
#!
  
#*From Sensors to Human Spatial Concepts: An Annotated Data Set.
#@Zoran Zivkovic,Olaf Booij,Ben J. A. Kröse,Elin Anna Topp,Henrik I. Christensen
#t2008
#cIEEE Transactions on Robotics
#index1177813
#% 
#!
  
#*Large-Scale 6-DOF SLAM With Stereo-in-Hand.
#@Lina María Paz,Pedro Pinies,Juan D. Tardós,José Neira
#t2008
#cIEEE Transactions on Robotics
#index1177814
#% 
#!
  
#*Optimal Motion Strategies for Range-Only Constrained Multisensor Target Tracking.
#@Ke X. Zhou,Stergios I. Roumeliotis
#t2008
#cIEEE Transactions on Robotics
#index1177815
#% 
#!
  
#*FrameSLAM: From Bundle Adjustment to Real-Time Visual Mapping.
#@Kurt Konolige,Motilal Agrawal
#t2008
#cIEEE Transactions on Robotics
#index1177816
#% 
#!
  
#*Localization and Matching Using the Planar Trifocal Tensor With Bearing-Only Data.
#@José Jesús Guerrero,A. C. Murillo,Carlos Sagüés
#t2008
#cIEEE Transactions on Robotics
#index1177817
#% 
#!
  
#*Mapping a Suburb With a Single Camera Using a Biologically Inspired SLAM System.
#@Michael Milford,Gordon Wyeth
#t2008
#cIEEE Transactions on Robotics
#index1177818
#% 
#!
  
#*3-D Snake Robot Motion: Nonsmooth Modeling, Simulations, and Experiments.
#@Aksel Andreas Transeth,Remco I. Leine,Christoph Glocker,Kristin Ytterstad Pettersen
#t2008
#cIEEE Transactions on Robotics
#index1177819
#% 
#!
  
#*Analytical Inverse Kinematic Computation for 7-DOF Redundant Manipulators With Joint Limits and Its Application to Redundancy Resolution.
#@M. Shimizu,H. Kakuya,W.-K. Yoon,K. Kitagaki,K. Kosuge
#t2008
#cIEEE Transactions on Robotics
#index1177820
#% 
#!
  
#*Information-Efficient 3-D Visual SLAM for Unstructured Domains.
#@Weizhen Zhou,Jaime Valls Miró,Gamini Dissanayake
#t2008
#cIEEE Transactions on Robotics
#index1177821
#% 
#!
  
#*Artificial Whiskers Suitable for Array Implementation: Accounting for Lateral Slip and Surface Friction.
#@J. H. Solomon,M. Hartmann
#t2008
#cIEEE Transactions on Robotics
#index1177822
#% 
#!
  
#*Visual SLAM for Flying Vehicles.
#@Bastian Steder,Giorgio Grisetti,Cyrill Stachniss,Wolfram Burgard
#t2008
#cIEEE Transactions on Robotics
#index1177823
#% 
#!
  
#*Real-Time Adaptive Motion Planning (RAMP) of Mobile Manipulators in Dynamic Environments With Unforeseen Changes.
#@John Vannoy,Jing Xiao
#t2008
#cIEEE Transactions on Robotics
#index1177824
#% 
#!
  
#*The Influence of Teleoperator Stiffness and Damping on Object Discrimination.
#@Göran A. V. Christiansson,Richard Quint van der Linde,Frans C. T. van der Helm
#t2008
#cIEEE Transactions on Robotics
#index1177825
#% 
#!
  
#*A Natural Feature Representation for Unstructured Environments.
#@Fabio T. Ramos,Suresh Kumar,Ben Upcroft,Hugh F. Durrant-Whyte
#t2008
#cIEEE Transactions on Robotics
#index1177826
#% 
#!
  
#*Dynamic Performance of Mobile Haptic Interfaces.
#@Alessandro Formaglio,Domenico Prattichizzo,Federico Barbagli,Antonio Giannitrapani
#t2008
#cIEEE Transactions on Robotics
#index1177827
#% 
#!
  
#*Large-Scale SLAM Building Conditionally Independent Local Maps: Application to Monocular Vision.
#@Pedro Pinies,Juan D. Tardós
#t2008
#cIEEE Transactions on Robotics
#index1177828
#% 
#!
  
#*Multisensor Input for CPG-Based Sensory---Motor Coordination.
#@Rodolphe Héliot,Bernard Espiau
#t2008
#cIEEE Transactions on Robotics
#index1177829
#% 
#!
  
#*Connectedness Preserving Distributed Swarm Aggregation for Multiple Kinematic Robots.
#@Dimos V. Dimarogonas,Kostas J. Kyriakopoulos
#t2008
#cIEEE Transactions on Robotics
#index1177830
#% 
#!
  
#*Convergent Smoothing and Segmentation of Noisy Range Data in Multiscale Space.
#@Martin David Adams,Tang Fan,Wijerupage Sardha Wijesoma,Chhay Sok
#t2008
#cIEEE Transactions on Robotics
#index1177831
#% 
#!
  
#*Improved Positioning Accuracy of the PA10-6CE Robot with Geometric and Flexibility Calibration.
#@Chris Lightcap,Samuel Hamner,Tony Schmitz,Scott A. Banks
#t2008
#cIEEE Transactions on Robotics
#index1177832
#% 
#!
  
#*Appearance-Guided Monocular Omnidirectional Visual Odometry for Outdoor Ground Vehicles.
#@Davide Scaramuzza,Roland Siegwart
#t2008
#cIEEE Transactions on Robotics
#index1177833
#% 
#!
  
#*Inverse Depth Parametrization for Monocular SLAM.
#@Javier Civera,Andrew J. Davison,J. M. M. Montiel
#t2008
#cIEEE Transactions on Robotics
#index1177834
#% 
#!
  
#*Editorial.
#@Seth Hutchinson
#t2008
#cIEEE Transactions on Robotics
#index1177835
#% 
#!
  
#*Optimal Extended Jacobian Inverse Kinematics Algorithms for Robotic Manipulators.
#@Krzysztof Tchon
#t2008
#cIEEE Transactions on Robotics
#index1177836
#% 
#!
  
#*Snake Robot Obstacle-Aided Locomotion: Modeling, Simulations, and Experiments.
#@Aksel Andreas Transeth,Remco I. Leine,Christoph Glocker,Kristin Ytterstad Pettersen,Pål Liljebäck
#t2008
#cIEEE Transactions on Robotics
#index1177837
#% 
#!
  
#*Stable Bipedal Walking With Foot Rotation Through Direct Regulation of the Zero Moment Point.
#@Christine Chevallereau,Dalila Djoudi,J. W. Grizzle
#t2008
#cIEEE Transactions on Robotics
#index1177838
#% 
#!
  
#*Fusing Monocular Information in Multicamera SLAM.
#@Joan Solà,André Monin,Michel Devy,Teresa Vidal-Calleja
#t2008
#cIEEE Transactions on Robotics
#index1177839
#% 
#!
  
#*A Kalman Filter-Based Algorithm for IMU-Camera Calibration: Observability Analysis and Performance Evaluation.
#@Faraz M. Mirzaei,Stergios I. Roumeliotis
#t2008
#cIEEE Transactions on Robotics
#index1177840
#% 
#!
  
#*Fast Dynamics of an Eel-Like Robot - Comparisons With Navier-Stokes Simulations.
#@Frédéric Boyer,Mathieu Porez,Alban Leroyer,M. Visonneau
#t2008
#cIEEE Transactions on Robotics
#index1177841
#% 
#!
  
#*CBUG: A Quadratically Competitive Mobile Robot Navigation Algorithm.
#@Yoav Gabriely,Elon Rimon
#t2008
#cIEEE Transactions on Robotics
#index1177842
#% 
#!
  
#*Distributed Connectivity Control of Mobile Networks.
#@Michael M. Zavlanos,George J. Pappas
#t2008
#cIEEE Transactions on Robotics
#index1177843
#% 
#!
  
#*Convergence-Preserving Switching for Topology-Dependent Decentralized Systems.
#@Brian Shucker,Todd D. Murphey,John K. Bennett
#t2008
#cIEEE Transactions on Robotics
#index1177844
#% 
#!
  
#*On Discrete-Time Pursuit-Evasion Games With Sensing Limitations.
#@Shaunak Dattaprasad Bopardikar,Francesco Bullo,João Pedro Hespanha
#t2008
#cIEEE Transactions on Robotics
#index1177845
#% 
#!
  
#*Robust scene reconstruction from an omnidirectional vision system.
#@Roland Bunschoten,Ben J. A. Kröse,Nikos A. Vlassis
#t2003
#cIEEE Transactions on Robotics
#index2877783
#% 
#!
  
#*Erratum to "On the Synthesis of Haptic Textures" [Jun 08 527-536].
#@Gianni Campion,Vincent Hayward
#t2009
#cIEEE Transactions on Robotics
#index2877867
#% 
#!
  
#*Path-tracking of a tractor-trailer vehicle along rectilinear and circular paths: a Lyapunov-based approach.
#@Alessandro Astolfi,Paolo Bolzern,Arturo Locatelli
#t2004
#cIEEE Transactions on Robotics
#index2877542
#% 
#!
  
#*Roadmap-based motion planning in dynamic environments.
#@Jur P. van den Berg,Mark H. Overmars
#t2005
#cIEEE Transactions on Robotics
#index2877655
#% 
#!
  
#*Workspace analysis and optimal design of a 3-leg 6-DOF parallel platform mechanism.
#@Bruno Monsarrat,Clément M. Gosselin
#t2003
#cIEEE Transactions on Robotics
#index2877752
#% 
#!
  
#*Real-Time Stabilization of an Eight-Rotor UAV Using Optical Flow.
#@Hugo Romero,Sergio Salazar,Rogelio Lozano
#t2009
#cIEEE Transactions on Robotics
#index2877881
#% 
#!
  
#*An architecture for scheduling and control in flexible manufacturing systems using distributed objects.
#@Tsu Ta Tai,Thomas O. Boucher
#t2002
#cIEEE Transactions on Robotics
#index2877504
#% 
#!
  
#*Guest Editorial Special Issue on Rehabilitation Robotics.
#@Eugenio Guglielmelli,Michelle J. Johnson,Takahori Shibata
#t2009
#cIEEE Transactions on Robotics
#index2877903
#% 
#!
  
#*Robust adaptive motion/force tracking control of uncertain nonholonomic mechanical systems.
#@Masahiro Oya,Chun-Yi Su,Ryozo Katoh
#t2003
#cIEEE Transactions on Robotics
#index2877774
#% 
#!
  
#*Orthogonal Gough-Stewart platforms for micromanipulation.
#@Farhad Jafari,John E. McInroy
#t2003
#cIEEE Transactions on Robotics
#index2877739
#% 
#!
  
#*Visual servoing of a 6-DOF manipulator for unknown 3-d profile following.
#@Jacques Gangloff,Michel de Mathelin
#t2002
#cIEEE Transactions on Robotics
#index2877502
#% 
#!
  
#*A new formulation of visual servoing based on cylindrical coordinate system.
#@Masami Iwatsuki,Norimitsu Okiyama
#t2005
#cIEEE Transactions on Robotics
#index2877705
#% 
#!
  
#*Iterative MILP methods for vehicle-control problems.
#@Matthew G. Earl,Raffaello D'Andrea
#t2005
#cIEEE Transactions on Robotics
#index2877696
#% 
#!
  
#*Process nets with resources for manufacturing modeling and their analysis.
#@MuDer Jeng,Xiaolan Xie,Mao Yu Peng
#t2002
#cIEEE Transactions on Robotics
#index2877481
#% 
#!
  
#*Integrated sensing and filter design for a single-link flexible manipulator.
#@Guoli Wang,Youfu Li
#t2004
#cIEEE Transactions on Robotics
#index2877585
#% 
#!
  
#*Independent finger and independent joint-based compliance control of multifingered robot hands.
#@Byoung-Ho Kim,Byung-Ju Yi,Sang-Rok Oh,Il Hong Suh
#t2003
#cIEEE Transactions on Robotics
#index2877791
#% 
#!
  
#*Generating classes of locally orthogonal Gough-Stewart platforms.
#@Yong Yi,John E. McInroy,Farhad Jafari
#t2005
#cIEEE Transactions on Robotics
#index2877613
#% 
#!
  
#*Nonlinear Feedback Control of a Gravity-Assisted Underactuated Manipulator With Application to Aircraft Assembly.
#@Binayak Roy,H. Harry Asada
#t2009
#cIEEE Transactions on Robotics
#index2877838
#% 
#!
  
#*Comments and corrections.
#@Jadran Lenarcic,Michael Stanisic
#t2003
#cIEEE Transactions on Robotics
#index2877796
#% 
#!
  
#*Influence of Vibration Modes and Human Operator on the Stability of Haptic Rendering.
#@I. Díaz,J. J. Gil
#t2010
#cIEEE Transactions on Robotics
#index2878007
#%238679
#%786544
#%1043104
#!
  
#*Active filtering of physiological motion in robotized surgery using predictive control.
#@Romuald Ginhoux,Jacques Gangloff,Michel de Mathelin,Luc Soler,Maria Mara Arenas Sanchez,Jacques Marescaux
#t2005
#cIEEE Transactions on Robotics
#index2877610
#% 
#!
  
#*Distributed computing in robotics and automation.
#@Davide Brugali,Mohamed E. Fayad
#t2002
#cIEEE Transactions on Robotics
#index2877499
#% 
#!
  
#*Guest editorial and guide to the issue.
#@Russell H. Taylor,Paolo Dario,Jocelyne Troccaz
#t2003
#cIEEE Transactions on Robotics
#index2877816
#% 
#!
  
#*An adaptive visual attentive tracker for human communicational behaviors using HMM-based TD learning with new State distinction capability.
#@Minh Anh Thi Ho,Yoji Yamada,Yoji Umetani
#t2005
#cIEEE Transactions on Robotics
#index2877604
#% 
#!
  
#*The Effects of Time Lag on Driving Performance and a Possible Mitigation.
#@J. Davis,C. Smyth,K. McDowell
#t2010
#cIEEE Transactions on Robotics
#index2877996
#%89302
#%691655
#%1043325
#%1195692
#!
  
#*Editorial.
#@Alessandro De Luca
#t2003
#cIEEE Transactions on Robotics
#index2877811
#% 
#!
  
#*Solving computational and memory requirements of feature-based simultaneous localization and mapping algorithms.
#@José E. Guivant,Eduardo Mario Nebot
#t2003
#cIEEE Transactions on Robotics
#index2877733
#% 
#!
  
#*Analytical Modeling and Experimental Validation of the Braided Pneumatic Muscle.
#@Marc Doumit,Atef Fahim,Michael Munro
#t2009
#cIEEE Transactions on Robotics
#index2877892
#% 
#!
  
#*Kinestatic analysis of robot manipulators using the Grassmann-Cayley algebra.
#@Ernesto Staffetti
#t2004
#cIEEE Transactions on Robotics
#index2877571
#% 
#!
  
#*Structural Shakiness of Nonoverconstrained Translational Parallel Mechanisms With Identical Limbs.
#@Qinchuan Li,Jacques Marie Hervé
#t2009
#cIEEE Transactions on Robotics
#index2877872
#%1195393
#!
  
#*How to keep from falling forward: elementary swing leg action for passive dynamic walkers.
#@Martijn Wisse,Arend L. Schwab,Richard Quint van der Linde,Frans C. T. van der Helm
#t2005
#cIEEE Transactions on Robotics
#index2877619
#% 
#!
  
#*Dynamics Filter - concept and implementation of online motion Generator for human figures.
#@Katsu Yamane,Yoshihiko Nakamura
#t2003
#cIEEE Transactions on Robotics
#index2877744
#% 
#!
  
#*Observability of discrete event systems modeled by interpreted Petri nets.
#@Antonio Ramírez-Treviño,Israel Rivera-Rangel,Ernesto López-Mellado
#t2003
#cIEEE Transactions on Robotics
#index2877781
#% 
#!
  
#*COBOS: Cooperative backoff adaptive scheme for multirobot task allocation.
#@Cheng-Heng Fua,Shuzhi Sam Ge
#t2005
#cIEEE Transactions on Robotics
#index2877522
#% 
#!
  
#*Kinematic Calibration of Parallel Mechanisms: A Novel Approach Using Legs Observation.
#@Pierre Renaud,Nicolas Andreff,Philippe Martinet,Grigore Gogu
#t2005
#cIEEE Transactions on Robotics
#index2877641
#% 
#!
  
#*Data-mining approach to production control in the computer-integrated testing cell.
#@Choonjong Kwak,Yuehwem Yih
#t2004
#cIEEE Transactions on Robotics
#index2877556
#% 
#!
  
#*Automated flaw detection in aluminum castings based on the tracking of potential defects in a radioscopic image sequence.
#@Domingo Mery,Dieter Filbert
#t2002
#cIEEE Transactions on Robotics
#index2877466
#% 
#!
  
#*Point-based and region-based image moments for visual servoing of planar objects.
#@Omar Tahri,François Chaumette
#t2005
#cIEEE Transactions on Robotics
#index2877529
#% 
#!
  
#*Path planning with uncalibrated stereo rig for image-based visual servoing under large pose discrepancy.
#@Jae Seok Park,Myung Jin Chung
#t2003
#cIEEE Transactions on Robotics
#index2877799
#% 
#!
  
#*Human-supervised multiple mobile robot system.
#@Akio Nakamura,Jun Ota,Tamio Arai
#t2002
#cIEEE Transactions on Robotics
#index2877447
#% 
#!
  
#*Information-Based Compact Pose SLAM.
#@Viorela Ila,Josep M. Porta,Juan Andrade-Cetto
#t2010
#cIEEE Transactions on Robotics
#index2877987
#%2022
#%391613
#%757733
#%757682
#%907950
#%907739
#%1050451
#%1121844
#%1274203
#%1274142
#%1274215
#%1274156
#%1274276
#!
  
#*Design of a live and maximally permissive Petri net controller using the theory of regions.
#@Asma Ghaffari,Nidhal Rezg,Xiaolan Xie
#t2003
#cIEEE Transactions on Robotics
#index2877724
#% 
#!
  
#*Application of the Antipodal Grasp Theorem to Cable-Driven Robots.
#@Philip A. Voglewede,Imme Ebert-Uphoff
#t2005
#cIEEE Transactions on Robotics
#index2877625
#% 
#!
  
#*Omnidirectional Visual-Servo of a Gough-Stewart Platform.
#@Omar Tahri,Youcef Mezouar,Nicolas Andreff,Philippe Martinet
#t2009
#cIEEE Transactions on Robotics
#index2877936
#% 
#!
  
#*Stabilization of a Hierarchical Formation of Unicycle Robots with Velocity and Curvature Constraints.
#@Luca Consolini,Fabio Morbidi,Domenico Prattichizzo,Mario Tosques
#t2009
#cIEEE Transactions on Robotics
#index2877894
#%757878
#%1181262
#%2890086
#!
  
#*Cooperative Load Transport: A Formation-Control Perspective.
#@H. Bai,J. T. Wen
#t2010
#cIEEE Transactions on Robotics
#index2877978
#%1181016
#%1274280
#%3354571
#!
  
#*Type synthesis of 3R2T 5-DOF parallel mechanisms using the Lie group of displacements.
#@Qinchuan Li,Zhen Huang,Jacques Marie Hervé
#t2004
#cIEEE Transactions on Robotics
#index2877579
#% 
#!
  
#*Exoskeletal Force-Sensing End-Effectors With Embedded Optical Fiber-Bragg-Grating Sensors.
#@Yong-Lae Park,Seok Chang Ryu,Richard J. Black,Kelvin Chau,Behzad Moslehi,Mark R. Cutkosky
#t2009
#cIEEE Transactions on Robotics
#index2877847
#% 
#!
  
#*Distance Between a Point and a Convex Cone in n -Dimensional Space: Computation and Applications.
#@Yu Zheng,Chee-Meng Chew
#t2009
#cIEEE Transactions on Robotics
#index2877922
#% 
#!
  
#*High-precision visual control of mobile manipulators.
#@Michael Seelinger,John-David Yoder,Eric T. Baumgartner,Steven B. Skaar
#t2002
#cIEEE Transactions on Robotics
#index2877458
#% 
#!
  
#*Smart surgical tools and augmenting devices.
#@Paolo Dario,Blake Hannaford,Arianna Menciassi
#t2003
#cIEEE Transactions on Robotics
#index2877802
#% 
#!
  
#*Visual Servoing Path Planning via Homogeneous Forms and LMI Optimizations.
#@Graziano Chesi
#t2009
#cIEEE Transactions on Robotics
#index2877850
#%907749
#%1031347
#%1031348
#%1152174
#%1226724
#%3004342
#!
  
#*A Novel Concept for Building a Hyper-Redundant Chain Robot.
#@KeJun Ning,Florentin Wörgötter
#t2009
#cIEEE Transactions on Robotics
#index2877925
#% 
#!
  
#*A miniature microsurgical instrument tip force sensor for enhanced force feedback during robot-assisted manipulation.
#@Peter J. Berkelman,Louis L. Whitcomb,Russell H. Taylor,Patrick S. Jensen
#t2003
#cIEEE Transactions on Robotics
#index2877766
#% 
#!
  
#*Eclipse II: a new parallel mechanism enabling continuous 360-degree spinning plus three-axis translational motions.
#@Jongwon Kim,Jae-Chul Hwang,Jin-Sung Kim,C. C. Iurascu,Frank Chongwoo Park,Young Man Cho
#t2002
#cIEEE Transactions on Robotics
#index2877517
#% 
#!
  
#*Multicyclic hoist scheduling with constant processing times.
#@Ada Che,Chengbin Chu,Feng Chu
#t2002
#cIEEE Transactions on Robotics
#index2877449
#% 
#!
  
#*A stabilizing receding horizon regulator for nonholonomic mobile robots.
#@Dongbing Gu,Huosheng Hu
#t2005
#cIEEE Transactions on Robotics
#index2877690
#% 
#!
  
#*Kinestatic Analysis of Nonsingular Lower Mobility Manipulators.
#@Man Bok Hong,Yong Je Choi
#t2009
#cIEEE Transactions on Robotics
#index2877916
#% 
#!
  
#*A global output-feedback controller for simultaneous tracking and stabilization of unicycle-type mobile robots.
#@Khac Duc Do,Zhong-Ping Jiang,Jie Pan
#t2004
#cIEEE Transactions on Robotics
#index2877554
#% 
#!
  
#*A control Lyapunov function approach to multiagent coordination.
#@Petter Ögren,Magnus Egerstedt,Xiaoming Hu
#t2002
#cIEEE Transactions on Robotics
#index2877534
#% 
#!
  
#*Two solutions to the adaptive visual servoing problem.
#@Alessandro Astolfi,Liu Hsu,Mariana S. Netto,Romeo Ortega
#t2002
#cIEEE Transactions on Robotics
#index2877479
#% 
#!
  
#*Generative representations for the automated design of modular physical robots.
#@Gregory S. Hornby,Hod Lipson,Jordan B. Pollack
#t2003
#cIEEE Transactions on Robotics
#index2877805
#% 
#!
  
#*Hough transform for distance computation and collision avoidance.
#@Enrique J. Bernabeu,Josep Tornero
#t2002
#cIEEE Transactions on Robotics
#index2877484
#% 
#!
  
#*Geometric integration on Euclidean group with application to articulated multibody systems.
#@Jonghoon Park,Wan Kyun Chung
#t2005
#cIEEE Transactions on Robotics
#index2877618
#% 
#!
  
#*Swing-up and stabilization of an underactuated manipulator without state feedback of free joint.
#@Hiroshi Yabuno,Kazukuni Goto,Nobuharu Aoshima
#t2004
#cIEEE Transactions on Robotics
#index2877548
#% 
#!
  
#*Evolutionary Trajectory Planner for Multiple UAVs in Realistic Scenarios.
#@Eva Besada-Portas,L. de la Torre,Jesús Manuel de la Cruz,Bonifacio Andres-Toro
#t2010
#cIEEE Transactions on Robotics
#index2878014
#%140
#%226813
#%227730
#%227780
#%228007
#%1150373
#!
  
#*Control of cooperating mobile manipulators.
#@Thomas G. Sugar,R. Vijay Kumar
#t2002
#cIEEE Transactions on Robotics
#index2877429
#% 
#!
  
#*SIMOO-RT-an object-oriented framework for the development of real-time industrial automation systems.
#@Leandro Buss Becker,Carlos Eduardo Pereira
#t2002
#cIEEE Transactions on Robotics
#index2877512
#% 
#!
  
#*Evaluation of Generalized Force Derivatives by Means of a Recursive Newton-Euler Approach.
#@Corrado Guarino Lo Bianco
#t2009
#cIEEE Transactions on Robotics
#index2877958
#% 
#!
  
#*An efficient approach to the forward kinematics of a planar parallel manipulator with similar platforms.
#@Ping Ji,Hongtao Wu
#t2002
#cIEEE Transactions on Robotics
#index2877440
#% 
#!
  
#*A Distributed Heuristic for Energy-Efficient Multirobot Multiplace Rendezvous.
#@Yaroslav Litus,Pawel Zebrowski,Richard T. Vaughan
#t2009
#cIEEE Transactions on Robotics
#index2877859
#%79005
#%119547
#!
  
#*SWARMORPH: Multirobot Morphogenesis Using Directional Self-Assembly.
#@Rehan O'Grady,Anders Lyhne Christensen,Marco Dorigo
#t2009
#cIEEE Transactions on Robotics
#index2877825
#%757949
#%757778
#%757976
#%757977
#%758025
#!
  
#*Scalable Variational Integrators for Constrained Mechanical Systems in Generalized Coordinates.
#@Elliot R. Johnson,Todd D. Murphey
#t2009
#cIEEE Transactions on Robotics
#index2877908
#% 
#!
  
#*Time-scaling control for an underactuated biped robot.
#@Christine Chevallereau
#t2003
#cIEEE Transactions on Robotics
#index2877718
#% 
#!
  
#*Vision-based global localization and mapping for mobile robots.
#@Stephen Se,David G. Lowe,James J. Little
#t2005
#cIEEE Transactions on Robotics
#index2877663
#% 
#!
  
#*The hierarchical atlas.
#@Brad Lisien,Deryck Morales,David Silver,George Kantor,Ioannis M. Rekleitis,Howie Choset
#t2005
#cIEEE Transactions on Robotics
#index2877691
#% 
#!
  
#*Generalized Stewart-Gough platforms and their direct kinematics.
#@Xiao-Shan Gao,Deli Lei,Qizheng Liao,Gui-Fang Zhang
#t2005
#cIEEE Transactions on Robotics
#index2877632
#% 
#!
  
#*Localization of a mobile robot using relative bearing measurements.
#@Kai Briechle,Uwe D. Hanebeck
#t2004
#cIEEE Transactions on Robotics
#index2877559
#% 
#!
  
#*On adaptive synchronization control of coordinated multirobots with flexible/rigid constraints.
#@Wen-Hong Zhu
#t2005
#cIEEE Transactions on Robotics
#index2877605
#% 
#!
  
#*Adaptive force control of position/velocity controlled robots: theory and experiment.
#@Jaydeep Roy,Louis L. Whitcomb
#t2002
#cIEEE Transactions on Robotics
#index2877423
#% 
#!
  
#*Acceleration and torque redistribution for a dual-manipulator system.
#@William S. Owen,Elizabeth A. Croft,Beno Benhabib
#t2005
#cIEEE Transactions on Robotics
#index2877646
#% 
#!
  
#*Enhanced Stiffness Modeling, Identification and Characterization for Robot Manipulators.
#@Gürsel Alici,Bijan Shirinzadeh
#t2005
#cIEEE Transactions on Robotics
#index2877683
#% 
#!
  
#*A Noninvasive Brain-Actuated Wheelchair Based on a P300 Neurophysiological Protocol and Automated Navigation.
#@Iñaki Iturrate,Javier M. Antelis,Andrea Kübler,Javier Minguez
#t2009
#cIEEE Transactions on Robotics
#index2877853
#% 
#!
  
#*Robust Impedance Control of a Flexible Structure Mounted Manipulator Performing Contact Tasks.
#@Theeraphong Wongratanaphisan,Matthew O. T. Cole
#t2009
#cIEEE Transactions on Robotics
#index2877931
#%920137
#%1152449
#%1195304
#!
  
#*Evolutionary Route Planner for Unmanned Air Vehicles.
#@Changwen Zheng,Lei Li,Fanjiang Xu,Fuchun Sun,Mingyue Ding
#t2005
#cIEEE Transactions on Robotics
#index2877677
#% 
#!
  
#*Synthesis of deadlock prevention supervisors using Petri nets.
#@Marian V. Iordache,John O. Moody,Panos J. Antsaklis
#t2002
#cIEEE Transactions on Robotics
#index2877467
#% 
#!
  
#*Analysis and design of parallel mechanisms with flexure joints.
#@Byoung Hun Kang,John T. Wen,Nicholas G. Dagalakis,Jason Gorman
#t2005
#cIEEE Transactions on Robotics
#index2877612
#% 
#!
  
#*Workspace generation of hyper-redundant manipulators as a diffusion process on SE(N).
#@Yunfeng Wang,Gregory S. Chirikjian
#t2004
#cIEEE Transactions on Robotics
#index2877540
#% 
#!
  
#*Generating continuous free crab gaits for quadruped robots on irregular terrain.
#@Joaquin Estremera,Pablo González de Santos
#t2005
#cIEEE Transactions on Robotics
#index2877704
#% 
#!
  
#*Grip-force control of an elastic object by vision-based slip-margin feedback during the incipient slip.
#@Jun Ueda,Atsutoshi Ikeda,Tsukasa Ogasawara
#t2005
#cIEEE Transactions on Robotics
#index2877606
#% 
#!
  
#*Uncalibrated dynamic visual servoing.
#@Jenelle Armstrong Piepmeier,Gary V. McMurray,Harvey Lipkin
#t2004
#cIEEE Transactions on Robotics
#index2877568
#% 
#!
  
#*An improved inverse kinematic and velocity solution for spatial hyper-redundant robots.
#@Farbod Fahimi,Hashem Ashrafiuon,Chandrasekhar Nataraj
#t2002
#cIEEE Transactions on Robotics
#index2877537
#% 
#!
  
#*A leg configuration measurement system for full-body pose estimates in a hexapod robot.
#@Pei-Chun Lin,Haldun Komsuoglu,Daniel E. Koditschek
#t2005
#cIEEE Transactions on Robotics
#index2877611
#% 
#!
  
#*A closed-form expression for the uncertainty in odometry position estimate of an autonomous vehicle.
#@Josep Maria Mirats i Tur,Carlos Albores-Borja,José Luis Gordillo
#t2005
#cIEEE Transactions on Robotics
#index2877535
#% 
#!
  
#*Parallel Mechanisms With Bifurcation of Schoenflies Motion.
#@Qinchuan Li,Jacques Marie Hervé
#t2009
#cIEEE Transactions on Robotics
#index2877945
#%919901
#%1195113
#%1195393
#!
  
#*Simultaneous localization and map building for a team of cooperating robots: a set membership approach.
#@Mauro Di Marco,Andrea Garulli,Antonio Giannitrapani,Antonio Vicino
#t2003
#cIEEE Transactions on Robotics
#index2877753
#% 
#!
  
#*Coverage control for mobile sensing networks.
#@Jorge Cortés,Sonia Martínez,Timur Karatas,Francesco Bullo
#t2004
#cIEEE Transactions on Robotics
#index2877598
#% 
#!
  
#*Pursuit-Evasion on Trees by Robot Teams.
#@Andreas Kolling,Stefano Carpin
#t2010
#cIEEE Transactions on Robotics
#index2877972
#%111594
#%614021
#%757964
#%757833
#%836820
#%839341
#%887765
#%950952
#%951151
#%952688
#%1060513
#%1092604
#%1096102
#%1274210
#%1307035
#!
  
#*Adaptive neural network control for robotic manipulators [Book Review].
#@Shuzhi Sam Ge,Tong Heng Lee,Christopher J. Harris
#t2003
#cIEEE Transactions on Robotics
#index2877697
#% 
#!
  
#*Obstacle avoidance of manipulators with rate constraints.
#@Toshiharu Sugie,Kenji Fujimoto,Yutaka Kito
#t2003
#cIEEE Transactions on Robotics
#index2877719
#% 
#!
  
#*So Long, T-RA!
#@Alessandro De Luca
#t2004
#cIEEE Transactions on Robotics
#index2877573
#% 
#!
  
#*Architecture optimization of a 3-DOF translational parallel mechanism for machining applications, the orthoglide.
#@Damien Chablat,Philippe Wenger
#t2003
#cIEEE Transactions on Robotics
#index2877788
#% 
#!
  
#*Optimal, fault-tolerant mappings to achieve secondary goals without compromising primary performance.
#@Yixin Chen,John E. McInroy,Yong Yi
#t2003
#cIEEE Transactions on Robotics
#index2877782
#% 
#!
  
#*Policy mixtures: a novel approach for enhancing the operational flexibility of resource allocation systems with alternate routings.
#@Jonghun Park,Spyros A. Reveliotis
#t2002
#cIEEE Transactions on Robotics
#index2877492
#% 
#!
  
#*A convergent dynamic window approach to obstacle avoidance.
#@Petter Ögren,Naomi Ehrich Leonard
#t2005
#cIEEE Transactions on Robotics
#index2877523
#% 
#!
  
#*Measurement of finger posture and three-axis fingertip touch force using fingernail sensors.
#@Stephen A. Mascaro,H. Harry Asada
#t2004
#cIEEE Transactions on Robotics
#index2877590
#% 
#!
  
#*Stable limit sets in a dynamic parts feeder.
#@Kevin M. Lynch,Michael Northrop,Peng Pan
#t2002
#cIEEE Transactions on Robotics
#index2877438
#% 
#!
  
#*Port-Based Modeling and Simulation of Mechanical Systems With Rigid and Flexible Links.
#@Alessandro Macchelli,Claudio Melchiorri,Stefano Stramigioli
#t2009
#cIEEE Transactions on Robotics
#index2877808
#%920533
#%2889639
#!
  
#*Vibration-based terrain classification for planetary exploration rovers.
#@Christopher A. Brooks,Karl Iagnemma
#t2005
#cIEEE Transactions on Robotics
#index2877670
#% 
#!
  
#*A modular approach to the dynamics of complex multirobot systems.
#@Clifford S. Bonaventura,Kathryn W. Jablokow
#t2005
#cIEEE Transactions on Robotics
#index2877615
#% 
#!
  
#*Guest editorial advances in multirobot systems.
#@Tamio Arai,Enrico Pagello,Lynne E. Parker
#t2002
#cIEEE Transactions on Robotics
#index2877503
#% 
#!
  
#*A calibration method for odometry of mobile robots based on the least-squares technique: theory and experimental validation.
#@Gianluca Antonelli,Stefano Chiaverini,Giuseppe Fusco
#t2005
#cIEEE Transactions on Robotics
#index2877684
#% 
#!
  
#*Optimal cyclic scheduling for printed circuit board production lines with multiple hoists and general processing sequence.
#@Janny Leung,Guoqing Zhang
#t2003
#cIEEE Transactions on Robotics
#index2877736
#% 
#!
  
#*Optimal sensor distribution for variation diagnosis in multistation assembly processes.
#@Yu Ding,Pansoo Kim,Dariusz Ceglarek,Jionghua Jin
#t2003
#cIEEE Transactions on Robotics
#index2877741
#% 
#!
  
#*Flow-Through Policies for Hybrid Controller Synthesis Applied to Fully Actuated Systems.
#@David C. Conner,Howie Choset,Alfred A. Rizzi
#t2009
#cIEEE Transactions on Robotics
#index2877889
#%950182
#!
  
#*Optimal Object Configurations to Minimize the Positioning Error in Visual Servoing.
#@Graziano Chesi
#t2010
#cIEEE Transactions on Robotics
#index2877967
#%1226724
#%1231166
#%1306658
#%1306964
#%2877850
#%2878748
#!
  
#*FAce MOUSe: A novel human-machine interface for controlling the position of a laparoscope.
#@Atsushi Nishikawa,Toshinori Hosoi,Kengo Koara,Daiji Negoro,Ayae Hikita,Shuichi Asano,Haruhiko Kakutani,Fumio Miyazaki,Mitsugu Sekimoto,Masayoshi Yasui,Yasuhiro Miyake,Shuji Takiguchi,Morito Monden
#t2003
#cIEEE Transactions on Robotics
#index2877727
#% 
#!
  
#*A new robot architecture for tele-echography.
#@Adriana Vilchis Gonzales,Jocelyne Troccaz,Philippe Cinquin,Kohji Masuda,Franck Pellissier
#t2003
#cIEEE Transactions on Robotics
#index2877775
#% 
#!
  
#*Time-domain passivity control of haptic interfaces.
#@Blake Hannaford,Jee-Hwan Ryu
#t2002
#cIEEE Transactions on Robotics
#index2877450
#% 
#!
  
#*Medical robotics in computer-integrated surgery.
#@Russell H. Taylor,Dan Stoianovici
#t2003
#cIEEE Transactions on Robotics
#index2877722
#% 
#!
  
#*Inverse dynamics based control system for a three-degree-of-freedom flexible arm.
#@Vicente Feliú Batlle,José Andres S. Somolinos,Andrés García
#t2003
#cIEEE Transactions on Robotics
#index2877794
#% 
#!
  
#*Synthesis of force-closure grasps on 3-D objects based on the Q distance.
#@Xiangyang Zhu,Jun Wang
#t2003
#cIEEE Transactions on Robotics
#index2877747
#% 
#!
  
#*Image-guided control of a robot for medical ultrasound.
#@Purang Abolmaesumi,Septimiu E. Salcudean,Wen-Hong Zhu,Mohammad Reza Sirouspour,Simon Peter DiMaio
#t2002
#cIEEE Transactions on Robotics
#index2877443
#% 
#!
  
#*Coordinated multi-robot exploration.
#@Wolfram Burgard,Mark Moors,Cyrill Stachniss,Frank E. Schneider
#t2005
#cIEEE Transactions on Robotics
#index2877654
#% 
#!
  
#*Modeling and System Identification of a Life-Size Brake-Actuated Manipulator.
#@Brian Dellon,Yoky Matsuoka
#t2009
#cIEEE Transactions on Robotics
#index2877911
#%238629
#%434770
#!
  
#*An Analytical Continuous-Curvature Path-Smoothing Algorithm.
#@Kwangjin Yang,Salah Sukkarieh
#t2010
#cIEEE Transactions on Robotics
#index2878000
#% 
#!
  
#*Port placement planning in robot-assisted coronary artery bypass.
#@Jeremy W. Cannon,Jeffrey A. Stoll,Shaun Selha,Pierre E. Dupont,Robert D. Howe,David F. Torchiana
#t2003
#cIEEE Transactions on Robotics
#index2877819
#% 
#!
  
#*Haptic rendering of rigid contacts using impulsive and penalty forces.
#@Daniela Constantinescu,Septimiu E. Salcudean,Elizabeth A. Croft
#t2005
#cIEEE Transactions on Robotics
#index2877617
#% 
#!
  
#*Configuration Tracking for Continuum Manipulators With Coupled Tendon Drive.
#@David B. Camarillo,Christopher R. Carlson,J. Kenneth Salisbury
#t2009
#cIEEE Transactions on Robotics
#index2877833
#%34341
#%1195083
#%1195410
#!
  
#*Feedback-stabilized minimum distance maintenance for convex parametric surfaces.
#@Volkan Patoglu,R. Brent Gillespie
#t2005
#cIEEE Transactions on Robotics
#index2877712
#% 
#!
  
#*Passive bilateral control and tool dynamics rendering for nonlinear mechanical teleoperators.
#@Dongjun Lee,Perry Y. Li
#t2005
#cIEEE Transactions on Robotics
#index2877647
#% 
#!
  
#*LOST: localization-space trails for robot teams.
#@Richard T. Vaughan,Kasper Støy,Gaurav S. Sukhatme,Maja J. Mataric
#t2002
#cIEEE Transactions on Robotics
#index2877498
#% 
#!
  
#*A Model of Proximity Control for Information-Presenting Robots.
#@Fumitaka Yamaoka,Takayuki Kanda,Hiroshi Ishiguro,Norihiro Hagita
#t2010
#cIEEE Transactions on Robotics
#index2878022
#%89064
#%91106
#%691698
#%691579
#%691800
#%691667
#!
  
#*Optimal kinematic design of 2-DOF parallel manipulators with well-shaped workspace bounded by a specified conditioning index.
#@Tian Huang,Meng Li,Zhanxian Li,Derek G. Chetwynd,David J. Whitehouse
#t2004
#cIEEE Transactions on Robotics
#index2877555
#% 
#!
  
#*Velocity-Scheduling Control for a Unicycle Mobile Robot: Theory and Experiments.
#@Davide Buccieri,Damien Perritaz,Philippe Müllhaupt,Zhong-Ping Jiang,Dominique Bonvin
#t2009
#cIEEE Transactions on Robotics
#index2877830
#%3355320
#!
  
#*Probabilistic pursuit-evasion games: theory, implementation, and experimental evaluation.
#@René Vidal,Omid Shakernia,H. Jin Kim,David Hyunchul Shim,Shankar Sastry
#t2002
#cIEEE Transactions on Robotics
#index2877478
#% 
#!
  
#*A Linear Relaxation Technique for the Position Analysis of Multiloop Linkages.
#@Josep M. Porta,Lluís Ros,Federico Thomas
#t2009
#cIEEE Transactions on Robotics
#index2877875
#%1014081
#%2871207
#%2892165
#%3112424
#!
  
#*Two-Dimensional Contact and Noncontact Micromanipulation in Liquid Using an Untethered Mobile Magnetic Microrobot.
#@Steven Floyd,Chytra Pawashe,Metin Sitti
#t2009
#cIEEE Transactions on Robotics
#index2877930
#% 
#!
  
#*Conceptual design and dimensional synthesis for a 3-DOF module of the TriVariant-a novel 5-DOF reconfigurable hybrid robot.
#@Tian Huang,Meng Li,Xueman Zhao,Jiangping Mei,Derek G. Chetwynd,S. Jack Hu
#t2005
#cIEEE Transactions on Robotics
#index2877692
#% 
#!
  
#*Sampling-Based Path Planning on Configuration-Space Costmaps.
#@Leonard Jaillet,Juan Cortés,Thierry Siméon
#t2010
#cIEEE Transactions on Robotics
#index2877984
#%1274179
#%3002009
#!
  
#*An adaptive iterative learning control algorithm with experiments on an industrial robot.
#@Mikael Norrlöf
#t2002
#cIEEE Transactions on Robotics
#index2877437
#% 
#!
  
#*Resequencing and feature assignment on an automated assembly line.
#@Maher Lahmar,Hakan Ergan,Saif Benjaafar
#t2003
#cIEEE Transactions on Robotics
#index2877767
#% 
#!
  
#*Dermarob: A safe robot for reconstructive surgery.
#@Etienne Dombre,Gilles Duchemin,Philippe Poignet,François Pierrot
#t2003
#cIEEE Transactions on Robotics
#index2877757
#% 
#!
  
#*Motion planning of multiple mobile robots for Cooperative manipulation and transportation.
#@Atsushi Yamashita,Tamio Arai,Jun Ota,Hajime Asama
#t2003
#cIEEE Transactions on Robotics
#index2877761
#% 
#!
  
#*Path planning for robust image-based control.
#@Youcef Mezouar,François Chaumette
#t2002
#cIEEE Transactions on Robotics
#index2877430
#% 
#!
  
#*Passive compensation of nonlinear robot dynamics.
#@Vincent Duindam,Stefano Stramigioli,Jacquelien M. A. Scherpen
#t2004
#cIEEE Transactions on Robotics
#index2877560
#% 
#!
  
#*A Multisensor Decision Fusion System for Terrain Safety Assessment.
#@Homayoun Seraji,Navid Serrano
#t2009
#cIEEE Transactions on Robotics
#index2877917
#%14144
#%758041
#%1009404
#!
  
#*Failure Recovery Planning for an Arm Mounted on an Exploratory Rover.
#@Nina Patarinsky-Robson,J. Michael McCarthy,Irem Y. Tumer
#t2009
#cIEEE Transactions on Robotics
#index2877851
#% 
#!
  
#*Hybrid heuristic search for the scheduling of flexible manufacturing systems using Petri nets.
#@Antonio Reyes-Moro,Hongnian Yu,Gerry Kelleher
#t2002
#cIEEE Transactions on Robotics
#index2877457
#% 
#!
  
#*Miro - middleware for mobile robot applications.
#@Hans Utz,Stefan Sablatnög,Stefan Enderle,Gerhard Kraetzschmar.
#t2002
#cIEEE Transactions on Robotics
#index2877509
#% 
#!
  
#*Intrinsic Constraints of Neural Origin: Assessment and Application to Rehabilitation Robotics.
#@Domenico Campolo,Dino Accoto,Domenico Formica,Eugenio Guglielmelli
#t2009
#cIEEE Transactions on Robotics
#index2877858
#%757851
#!
  
#*On the role of process models in autonomous land vehicle navigation systems.
#@Simon J. Julier,Hugh F. Durrant-Whyte
#t2003
#cIEEE Transactions on Robotics
#index2877813
#% 
#!
  
#*Fluid-stochastic-event graphs for evaluation and optimization of discrete-event systems with failures.
#@Xiaolan Xie
#t2002
#cIEEE Transactions on Robotics
#index2877422
#% 
#!
  
#*Stability and four-posture control for nonholonomic mobile robots.
#@Hyun-Sik Shim,Yoon-Gyeoung Sung
#t2004
#cIEEE Transactions on Robotics
#index2877591
#% 
#!
  
#*Fast replanning for navigation in unknown terrain.
#@Sven Koenig,Maxim Likhachev
#t2005
#cIEEE Transactions on Robotics
#index2877626
#% 
#!
  
#*Simultaneous control of position and orientation for ball-plate manipulation problem based on time-State control form.
#@Hisashi Date,Mitsuji Sampei,Masato Ishikawa,Masanobu Koga
#t2004
#cIEEE Transactions on Robotics
#index2877578
#% 
#!
  
#*Control of a Class of Underactuated Mechanical Systems Using Sliding Modes.
#@Velupillai Sankaranarayanan,Arun D. Mahindrakar
#t2009
#cIEEE Transactions on Robotics
#index2877852
#%1180740
#%3354611
#!
  
#*Robust direct visual servo using network-synchronized cameras.
#@Derek C. Schuurman,David W. Capson
#t2004
#cIEEE Transactions on Robotics
#index2877597
#% 
#!
  
#*Micro parts assembly system with micro gripper and RCC unit.
#@Young-bong Bang,Kyung-min Lee,Juho Kook,Wonseok Lee,In-su Kim
#t2005
#cIEEE Transactions on Robotics
#index2877675
#% 
#!
  
#*A multilevel relaxation algorithm for simultaneous localization and mapping.
#@Udo Frese,Per Larsson,Tom Duckett
#t2005
#cIEEE Transactions on Robotics
#index2877635
#% 
#!
  
#*Vision-Based Adaptive Tracking Control of Uncertain Robot Manipulators.
#@Maruthi R. Akella
#t2005
#cIEEE Transactions on Robotics
#index2877608
#% 
#!
  
#*An ultraprecision six-axis visual servo-control system.
#@Jung H. Kim,Shih-Kang Kuo,Chia-Hsiang Menq
#t2005
#cIEEE Transactions on Robotics
#index2877701
#% 
#!
  
#*A novel gait generation for biped walking robots based on mechanical energy constraint.
#@Fumihiko Asano,Masaki Yamakita,Norihiro Kamamichi,Zhi Wei Luo
#t2004
#cIEEE Transactions on Robotics
#index2877581
#% 
#!
  
#*Extending Collision Avoidance Methods to Consider the Vehicle Shape, Kinematics, and Dynamics of a Mobile Robot.
#@Javier Minguez,Luis Montano
#t2009
#cIEEE Transactions on Robotics
#index2877844
#%757910
#%758076
#!
  
#*Visual servoing via navigation functions.
#@Noah J. Cowan,Joel Weingarten,Daniel E. Koditschek
#t2002
#cIEEE Transactions on Robotics
#index2877444
#% 
#!
  
#*Path coordination for multiple mobile robots: a resolution-complete algorithm.
#@Thierry Siméon,Stéphane Leroy,Jean-Paul Laumond
#t2002
#cIEEE Transactions on Robotics
#index2877500
#% 
#!
  
#*Automatic Deployment of Distributed Teams of Robots From Temporal Logic Motion Specifications.
#@Marius Kloetzer,Calin Belta
#t2010
#cIEEE Transactions on Robotics
#index2877966
#%79330
#%1091446
#%1128403
#%3002009
#!
  
#*A general algorithm for robot formations using local sensing and minimal communication.
#@Jakob Fredslund,Maja J. Mataric
#t2002
#cIEEE Transactions on Robotics
#index2877473
#% 
#!
  
#*Self-adaptive recurrent neuro-fuzzy control of an autonomous underwater vehicle.
#@Jeen-Shing Wang,C. S. George Lee
#t2003
#cIEEE Transactions on Robotics
#index2877789
#% 
#!
  
#*Consequences of Geometric Imperfections for the Control of Redundantly Actuated Parallel Manipulators.
#@A. Müller
#t2010
#cIEEE Transactions on Robotics
#index2877964
#%1195484
#%1274305
#!
  
#*The hands-on orthopaedic robot "acrobot": Early clinical trials of total knee replacement surgery.
#@Matjaz Jakopec,Ferdinando Rodriguez y Baena,Simon J. Harris,Paula Gomes,Justin Cobb,Brian L. Davies
#t2003
#cIEEE Transactions on Robotics
#index2877749
#% 
#!
  
#*Positioning a camera with respect to planar objects of unknown shape by coupling 2-D visual servoing and 3-D estimations.
#@Christophe Collewet,François Chaumette
#t2002
#cIEEE Transactions on Robotics
#index2877464
#% 
#!
  
#*Manipulability, force, and compliance analysis for planar continuum manipulators.
#@Ian A. Gravagne,Ian D. Walker
#t2002
#cIEEE Transactions on Robotics
#index2877442
#% 
#!
  
#*Contact impedance estimation for robotic systems.
#@Nicola Diolaiti,Claudio Melchiorri,Stefano Stramigioli
#t2005
#cIEEE Transactions on Robotics
#index2877702
#% 
#!
  
#*Gripper point contacts for part alignment.
#@Mike Tao Zhang,Ken Goldberg
#t2002
#cIEEE Transactions on Robotics
#index2877486
#% 
#!
  
#*Partially Flagged Parallel Manipulators: Singularity Charting and Avoidance.
#@Maria Alberich-Carramiñana,Marçal Garolera,Federico Thomas,Carme Torras Genís
#t2009
#cIEEE Transactions on Robotics
#index2877860
#% 
#!
  
#*Price-based approach for activity coordination in a supply network.
#@Peter B. Luh,Ming Ni,Haoxun Chen,Lakshman S. Thakur
#t2003
#cIEEE Transactions on Robotics
#index2877746
#% 
#!
  
#*A dual neural network for bi-criteria kinematic control of redundant manipulators.
#@Yunong Zhang,Jun Wang,Yangsheng Xu
#t2002
#cIEEE Transactions on Robotics
#index2877515
#% 
#!
  
#*The odometry error of a mobile robot with a synchronous drive system.
#@Agostino Martinelli
#t2002
#cIEEE Transactions on Robotics
#index2877520
#% 
#!
  
#*Maneuver-based motion planning for nonlinear systems with symmetries.
#@Emilio Frazzoli,Munther A. Dahleh,Eric Feron
#t2005
#cIEEE Transactions on Robotics
#index2877666
#% 
#!
  
#*A Control Approach for Actuated Dynamic Walking in Biped Robots.
#@David J. Braun,Michael Goldfarb
#t2009
#cIEEE Transactions on Robotics
#index2877918
#% 
#!
  
#*Fuzzy supervisory control of manufacturing systems.
#@Stratos Ioannidis,Nikos Tsourveloudis,Kimon P. Valavanis
#t2004
#cIEEE Transactions on Robotics
#index2877552
#% 
#!
  
#*Model-based space robot teleoperation of ETS-VII manipulator.
#@Woo-Keun Yoon,Toshihiko Goshozono,Hiroshi Kawabe,Masahiro Kinami,Yuichi Tsumaki,Masaru Uchiyama,Mitsushige Oda,Toshitsugu Doi
#t2004
#cIEEE Transactions on Robotics
#index2877543
#% 
#!
  
#*Robot Positioning Using Camera-Space Manipulation With a Linear Camera Model.
#@J. M. Rendon-Mancha,A. Cardenas,M. A. Garcia,Emilio J. Gonzalez-Galvan,B. Lara
#t2010
#cIEEE Transactions on Robotics
#index2877981
#%168457
#%292816
#%758109
#%835007
#%920076
#%920489
#%1031177
#%1031532
#%1031745
#%1033391
#%1050372
#!
  
#*Optimization of a Parallel Shoulder Mechanism to Achieve a High-Force, Low-Mass, Robotic-Arm Exoskeleton.
#@J. Klein,S. Spencer,J. Allington,James E. Bobrow,David J. Reinkensmeyer
#t2010
#cIEEE Transactions on Robotics
#index2878023
#%238456
#%1043264
#%2923232
#!
  
#*Robotic Cell Injection System With Position and Force Control: Toward Automatic Batch Biomanipulation.
#@Haibo B. Huang,Dong Sun,James K. Mills,Shuk Han Cheng
#t2009
#cIEEE Transactions on Robotics
#index2877878
#%1152237
#!
  
#*Case Studies of Musculoskeletal-Simulation-Based Rehabilitation Program Evaluation.
#@Leng-Feng Lee,Madusudanan S. Narayanan,Srikanth Kannan,Frank Mendel,Venkat Krovi
#t2009
#cIEEE Transactions on Robotics
#index2877944
#%1337828
#!
  
#*Needle insertion modeling and simulation.
#@Simon Peter DiMaio,Septimiu E. Salcudean
#t2003
#cIEEE Transactions on Robotics
#index2877768
#% 
#!
  
#*Minimum-Order Kalman Filter With Vector Selector for Accurate Estimation of Human Body Orientation.
#@Jung-Keun Lee,Edward J. Park
#t2009
#cIEEE Transactions on Robotics
#index2877869
#% 
#!
  
#*Shortest Paths for a Robot With Nonholonomic and Field-of-View Constraints.
#@Paolo Salaris,Daniele Fontanelli,Lucia Pallottino,Antonio Bicchi
#t2010
#cIEEE Transactions on Robotics
#index2877973
#%1274146
#%1274320
#%2877915
#!
  
#*Diagnosis of repeated/intermittent failures in discrete event systems.
#@Shengbing Jiang,Ratnesh Kumar,Humberto E. Garcia
#t2003
#cIEEE Transactions on Robotics
#index2877711
#% 
#!
  
#*Sufficient conditions used in admittance selection for force-guided assembly of polygonal parts.
#@Shuguang Huang,Joseph M. Schimmels
#t2003
#cIEEE Transactions on Robotics
#index2877786
#% 
#!
  
#*Powered Ankle--Foot Prosthesis Improves Walking Metabolic Economy.
#@Samuel K. Au,Jeff Weber,Hugh Herr
#t2009
#cIEEE Transactions on Robotics
#index2877937
#% 
#!
  
#*Nonlinear antiwindup applied to Euler-Lagrange systems.
#@Federico Morabito,Andrew R. Teel,Luca Zaccarian
#t2004
#cIEEE Transactions on Robotics
#index2877545
#% 
#!
  
#*An integrated approach for product family and assembly system design.
#@Pierre De Lit,Alain Delchambre,Jean-Michel Henrioud
#t2003
#cIEEE Transactions on Robotics
#index2877807
#% 
#!
  
#*Robot-Aided Neurorehabilitation: A Novel Robot for Ankle Rehabilitation.
#@Anindo Roy,Hermano Ingo Krebs,Dustin J. Williams,Christopher T. Bever,Larry W. Forrester,Richard M. Macko,Neville Hogan
#t2009
#cIEEE Transactions on Robotics
#index2877924
#%757755
#!
  
#*Robot control without velocity measurements: new theory and experimental results.
#@Marco A. Arteaga,Rafael Kelly
#t2004
#cIEEE Transactions on Robotics
#index2877558
#% 
#!
  
#*Automated Evolutionary Design, Robustness, and Adaptation of Sidewinding Locomotion of a Simulated Snake-Like Robot.
#@Ivan Tanev,Thomas S. Ray,Andrzej Buller
#t2005
#cIEEE Transactions on Robotics
#index2877665
#% 
#!
  
#*Integration of disassembly leveling and bin assignment for demanufacturing automation.
#@Meimei Gao,MengChu Zhou,Reggie J. Caudill
#t2002
#cIEEE Transactions on Robotics
#index2877506
#% 
#!
  
#*Velocity and position control of a wheeled inverted pendulum by partial feedback linearization.
#@Kaustubh Pathak,Jaume Franch,Sunil Kumar Agrawal
#t2005
#cIEEE Transactions on Robotics
#index2877726
#% 
#!
  
#*A Learning Approach to Robotic Table Tennis.
#@Michiya Matsushima,Takaaki Hashimoto,Masahiro Takeuchi,Fumio Miyazaki
#t2005
#cIEEE Transactions on Robotics
#index2877614
#% 
#!
  
#*Toward active tremor canceling in handheld microsurgical instruments.
#@Cameron N. Riviere,Wei Tech Ang,Pradeep K. Khosla
#t2003
#cIEEE Transactions on Robotics
#index2877721
#% 
#!
  
#*Overarching framework for measuring closeness to singularities of parallel manipulators.
#@Philip A. Voglewede,Imme Ebert-Uphoff
#t2005
#cIEEE Transactions on Robotics
#index2877627
#% 
#!
  
#*Characterizations of localization accuracy of fixtures.
#@Michael Yu Wang
#t2002
#cIEEE Transactions on Robotics
#index2877508
#% 
#!
  
#*Queues and Artificial Potential Trenches for Multirobot Formations.
#@Shuzhi Sam Ge,Cheng-Heng Fua
#t2005
#cIEEE Transactions on Robotics
#index2877693
#% 
#!
  
#*The Actuator With Mechanically Adjustable Series Compliance.
#@Jonathan W. Hurst,Joel E. Chestnutt,Alfred A. Rizzi
#t2010
#cIEEE Transactions on Robotics
#index2877974
#%1050534
#%1274362
#!
  
#*Design and analysis of kinematically redundant parallel manipulators with configurable platforms.
#@Maher G. Mohamed,Clément M. Gosselin
#t2005
#cIEEE Transactions on Robotics
#index2877653
#% 
#!
  
#*Fast Registration Based on Noisy Planes With Unknown Correspondences for 3-D Mapping.
#@Kaustubh Pathak,Andreas Birk,Narunas Vaskevicius,Jann Poppinga
#t2010
#cIEEE Transactions on Robotics
#index2878003
#%3951
#%128543
#%771673
#%946156
#%1031118
#%1152266
#%1195768
#%1306832
#%2882990
#!
  
#*Leader-to-formation stability.
#@Herbert G. Tanner,George J. Pappas,Vijay Kumar
#t2004
#cIEEE Transactions on Robotics
#index2877596
#% 
#!
  
#*Force-reflecting bilateral teleoperation with time delay by signal filtering.
#@Jun Ueda,Tsuneo Yoshikawa
#t2004
#cIEEE Transactions on Robotics
#index2877589
#% 
#!
  
#*Online Trajectory Generation: Basic Concepts for Instantaneous Reactions to Unforeseen Events.
#@Torsten Kröger,Friedrich M. Wahl
#t2010
#cIEEE Transactions on Robotics
#index2877980
#%1274196
#!
  
#*Narrow passage sampling for probabilistic roadmap planning.
#@Zheng Sun,David Hsu,Tingting Jiang,Hanna Kurniawati,John H. Reif
#t2005
#cIEEE Transactions on Robotics
#index2877667
#% 
#!
  
#*Design of bilateral teleoperation controllers for haptic exploration and telemanipulation of soft environments.
#@Murat Cenk Çavusoglu,Alana Sherman,Frank Tendick
#t2002
#cIEEE Transactions on Robotics
#index2877465
#% 
#!
  
#*Image-based visual servo control of aerial robotic systems using linear image features.
#@Robert E. Mahony,Tarek Hamel
#t2005
#cIEEE Transactions on Robotics
#index2877700
#% 
#!
  
#*Electroencephalogram-Based Control of an Electric Wheelchair.
#@Kazuo Tanaka,Kazuyuki Matsunaga,Hua O. Wang
#t2005
#cIEEE Transactions on Robotics
#index2877634
#% 
#!
  
#*Kinematic Modeling and Analysis of Skid-Steered Mobile Robots With Applications to Low-Cost Inertial-Measurement-Unit-Based Motion Estimation.
#@Jingang Yi,Hongpeng Wang,Junjie Zhang,Dezhen Song,Suhada Jayasuriya,Jingtai Liu
#t2009
#cIEEE Transactions on Robotics
#index2877832
#%757948
#%920300
#!
  
#*Distributed multirobot localization.
#@Stergios I. Roumeliotis,George A. Bekey
#t2002
#cIEEE Transactions on Robotics
#index2877456
#% 
#!
  
#*Autonomous evolution of dynamic gaits with two quadruped robots.
#@Gregory S. Hornby,Seiichi Takamura,Takashi Yamamoto,Masahiro Fujita
#t2005
#cIEEE Transactions on Robotics
#index2877532
#% 
#!
  
#*Compliant Terrain Adaptation for Biped Humanoids Without Measuring Ground Surface and Contact Forces.
#@Sang-Ho Hyon
#t2009
#cIEEE Transactions on Robotics
#index2877906
#%757739
#!
  
#*Design and implementation of a haptic device for training in urological operations.
#@Kostas Vlachos,Evangelos Papadopoulos,Dionissios N. Mitropoulos
#t2003
#cIEEE Transactions on Robotics
#index2877777
#% 
#!
  
#*Dynamic characteristics of a novel self-drive pipeline pig.
#@Zheng Hu,Ernest Appleton
#t2005
#cIEEE Transactions on Robotics
#index2877674
#% 
#!
  
#*Cobot implementation of virtual paths and 3D virtual surfaces.
#@Carl A. Moore,Michael A. Peshkin,J. Edward Colgate
#t2003
#cIEEE Transactions on Robotics
#index2877728
#% 
#!
  
#*A human-assisting manipulator teleoperated by EMG signals and arm motions.
#@Osamu Fukuda,Toshio Tsuji,Makoto Kaneko,Akira Otsuka
#t2003
#cIEEE Transactions on Robotics
#index2877812
#% 
#!
  
#*Dual-Differential Rheological Actuator for High-Performance Physical Robotic Interaction.
#@P. Fauteux,Michel Lauria,B. Heintz,François Michaud
#t2010
#cIEEE Transactions on Robotics
#index2877994
#% 
#!
  
#*Author's reply [to comments on 'Research on estimating smoothed value and differential value by using sliding mode system'].
#@Takanori Emaru,Takeshi Tsuchiya
#t2005
#cIEEE Transactions on Robotics
#index2877656
#% 
#!
  
#*Detecting Region Transitions for Human-Augmented Mapping.
#@Elin Anna Topp,Henrik I. Christensen
#t2010
#cIEEE Transactions on Robotics
#index2878001
#%15898
#!
  
#*Abstracting People's Trajectories for Social Robots to Proactively Approach Customers.
#@Takayuki Kanda,Dylan F. Glas,Masahiro Shiomi,Norihiro Hagita
#t2009
#cIEEE Transactions on Robotics
#index2877947
#% 
#!
  
#*Nearness diagram (ND) navigation: collision avoidance in troublesome scenarios.
#@Javier Minguez,Luis Montano
#t2004
#cIEEE Transactions on Robotics
#index2877588
#% 
#!
  
#*Self-calibration of a rotating camera with a translational offset.
#@Qiang Ji,Songtao Dai
#t2004
#cIEEE Transactions on Robotics
#index2877451
#% 
#!
  
#*Robot-Assisted Real-Time Tumor Manipulation for Breast Biopsy.
#@Vishnu Mallapragada,Nilanjan Sarkar,Tarun Kanti Podder
#t2009
#cIEEE Transactions on Robotics
#index2877842
#%63322
#%498175
#%497897
#%920575
#%497637
#!
  
#*Increasing Accuracy in Image-Guided Robotic Surgery Through Tip Tracking and Model-Based Flexion Correction.
#@Ryan A. Beasley,Robert D. Howe
#t2009
#cIEEE Transactions on Robotics
#index2877827
#%130867
#%130859
#%497886
#%920575
#%1043685
#!
  
#*Sold!: auction methods for multirobot coordination.
#@Brian P. Gerkey,Maja J. Mataric
#t2002
#cIEEE Transactions on Robotics
#index2877501
#% 
#!
  
#*On mobile robot localization from landmark bearings.
#@Ilan Shimshoni
#t2002
#cIEEE Transactions on Robotics
#index2877436
#% 
#!
  
#*Multi-UAV Convoy Protection: An Optimal Approach to Path Planning and Coordination.
#@Xu Chu Ding,Amirreza Rahmani,Magnus Egerstedt
#t2010
#cIEEE Transactions on Robotics
#index2877985
#%110555
#%3002009
#!
  
#*DPAC: an object-oriented distributed and parallel computing framework for manufacturing applications.
#@N. R. Srinivasa Raghavan,Tanmay Waghmare
#t2002
#cIEEE Transactions on Robotics
#index2877431
#% 
#!
  
#*A New Assessment of Singularities of Parallel Kinematic Chains.
#@Michele Conconi,Marco Carricato
#t2009
#cIEEE Transactions on Robotics
#index2877883
#%919901
#%1195125
#%3168925
#!
  
#*Theoretical improvements in the stability analysis of a new class of model-free visual servoing methods.
#@Ezio Malis,François Chaumette,Sylvie Boudet
#t2002
#cIEEE Transactions on Robotics
#index2877495
#% 
#!
  
#*Self-stabilizing somersaults.
#@Katja D. Mombaur,Hans Georg Bock,Johannes P. Schlöder,Richard W. Longman
#t2005
#cIEEE Transactions on Robotics
#index2877616
#% 
#!
  
#*Stereo Viewing and Virtual Reality Technologies in Mobile Robot Teleguide.
#@Salvatore Livatino,Giovanni Muscato,Filippo Privitera
#t2009
#cIEEE Transactions on Robotics
#index2877888
#% 
#!
  
#*A pseudodistance function and its applications.
#@Xiangyang Zhu,Han Ding,Shiu Kit Tso
#t2004
#cIEEE Transactions on Robotics
#index2877570
#% 
#!
  
#*Biologically Inspired Mobile Robot Vision Localization.
#@Christian Siagian,Laurent Itti
#t2009
#cIEEE Transactions on Robotics
#index2877928
#%4497
#%14152
#%293792
#%345883
#%746051
#%746052
#%757998
#%757926
#%907739
#%1009895
#%1031916
#%1033671
#!
  
#*A Hybrid MAV for Ingress and Egress of Urban Environments.
#@William E. Green,Paul Y. Oh
#t2009
#cIEEE Transactions on Robotics
#index2877909
#% 
#!
  
#*The arc-transversal median algorithm: a geometric approach to increasing ultrasonic sensor azimuth accuracy.
#@Howie Choset,Keiji Nagatani,Nicole A. Lazar
#t2003
#cIEEE Transactions on Robotics
#index2877738
#% 
#!
  
#*CS Freiburg: coordinating robots for successful soccer playing.
#@Thilo Weigel,Jens-Steffen Gutmann,Markus Dietl,Alexander Kleiner,Bernhard Nebel
#t2002
#cIEEE Transactions on Robotics
#index2877427
#% 
#!
  
#*Design of a Lagrangian relaxation-based hierarchical production scheduling environment for semiconductor wafer fabrication.
#@Ting-Kai Hwang,Shi-Chung Chang
#t2003
#cIEEE Transactions on Robotics
#index2877769
#% 
#!
  
#*Shortest Paths to Obstacles for a Polygonal Dubins Car.
#@Paolo Robuffo Giordano,Marilena Vendittelli
#t2009
#cIEEE Transactions on Robotics
#index2877835
#%920340
#%3002009
#!
  
#*Passive-Set-Position-Modulation Framework for Interactive Robotic Systems.
#@Dongjun Lee,Ke Huang
#t2010
#cIEEE Transactions on Robotics
#index2878020
#%1313582
#%1313649
#%1319074
#%1346777
#!
  
#*Comments on "Research on estimating smoothed value and differential value by using sliding mode system".
#@Jing-qing Han,Wei Wang
#t2005
#cIEEE Transactions on Robotics
#index2877710
#% 
#!
  
#*A control switching theory for supervisory control of discrete event systems.
#@Houshang Darabi,Mohsen A. Jafari,Anna L. Buczak
#t2003
#cIEEE Transactions on Robotics
#index2877631
#% 
#!
  
#*A Passive 2-DOF Walker: Hunting for Gaits Using Virtual Holonomic Constraints.
#@Leonid B. Freidovich,Uwe Mettin,Anton S. Shiriaev,Mark W. Spong
#t2009
#cIEEE Transactions on Robotics
#index2877938
#%758114
#%920309
#%1274143
#!
  
#*Biped Gait Generation and Control Based on a Unified Property of Passive Dynamic Walking.
#@Fumihiko Asano,Zhi Wei Luo,Masaki Yamakita
#t2005
#cIEEE Transactions on Robotics
#index2877607
#% 
#!
  
#*Randomized pursuit-evasion in a polygonal environment.
#@Volkan Isler,Sampath Kannan,Sanjeev Khanna
#t2005
#cIEEE Transactions on Robotics
#index2877645
#% 
#!
  
#*The sampling-based neighborhood graph: an approach to computing and executing feedback motion strategies.
#@Libo Yang,Steven M. LaValle
#t2004
#cIEEE Transactions on Robotics
#index2877550
#% 
#!
  
#*Modeling and control of contact between constrained rigid bodies.
#@Roy Featherstone
#t2004
#cIEEE Transactions on Robotics
#index2877563
#% 
#!
  
#*Experimental verifications of virtual-decomposition-based motion/force control.
#@Wen-Hong Zhu,Joris De Schutter
#t2002
#cIEEE Transactions on Robotics
#index2877452
#% 
#!
  
#*3-D mapping of natural environments with trees by means of mobile perception.
#@Pekka Forsman,Aarne Halme
#t2005
#cIEEE Transactions on Robotics
#index2877636
#% 
#!
  
#*2-D Ultrasound Probe Complete Guidance by Visual Servoing Using Image Moments.
#@Rafik Mebarki,Alexandre Krupa,François Chaumette
#t2010
#cIEEE Transactions on Robotics
#index2877993
#%834384
#%1032374
#%1274294
#%1274247
#%1320677
#!
  
#*Optimal Design of a 4-DOF Parallel Manipulator: From Academia to Industry.
#@François Pierrot,Vincent Nabat,Olivier Company,Sébastien Krut,Philippe Poignet
#t2009
#cIEEE Transactions on Robotics
#index2877886
#%228427
#%920315
#!
  
#*Global Manipulation Planning in Robot Joint Space With Task Constraints.
#@Mike Stilman
#t2010
#cIEEE Transactions on Robotics
#index2877965
#%920312
#%1050500
#!
  
#*Cooperative Robot Control and Concurrent Synchronization of Lagrangian Systems.
#@Soon Jo Chung,Jean-Jacques E. Slotine
#t2009
#cIEEE Transactions on Robotics
#index2877926
#%1027212
#%1027705
#%1180874
#%1274153
#%3247142
#!
  
#*How UGVs physically fail in the field.
#@Jennifer Carlson,Robin R. Murphy
#t2005
#cIEEE Transactions on Robotics
#index2877521
#% 
#!
  
#*Asymptotically Stable Walking of a Five-Link Underactuated 3-D Bipedal Robot.
#@Christine Chevallereau,Jessy W. Grizzle,Ching-Long Shih
#t2009
#cIEEE Transactions on Robotics
#index2877873
#%920057
#%1195438
#!
  
#*On the feasibility of using wireless ethernet for indoor localization.
#@Andrew M. Ladd,Kostas E. Bekris,Algis Rudys,Dan S. Wallach,Lydia E. Kavraki
#t2004
#cIEEE Transactions on Robotics
#index2877553
#% 
#!
  
#*Path planning for planar articulated robots using configuration spaces and compliant motion.
#@Elisha Sacks
#t2003
#cIEEE Transactions on Robotics
#index2877731
#% 
#!
  
#*Global alignment of sensor positions with noisy motion measurements.
#@Hossein Madjidi,Shahriar Negahdaripour
#t2005
#cIEEE Transactions on Robotics
#index2877526
#% 
#!
  
#*A holonic architecture for easy reconfiguration of robotic assembly systems.
#@Masao Sugi,Yusuke Maeda,Yasumichi Aiyama,Tomokazu Harada,Tamio Arai
#t2003
#cIEEE Transactions on Robotics
#index2877764
#% 
#!
  
#*Dynamic Manipulability of Multifingered Grasping.
#@Yasuyoshi Yokokohji,Jose San Martin,Masaki Fujiwara
#t2009
#cIEEE Transactions on Robotics
#index2877868
#%238505
#%3348887
#!
  
#*Adaptive synchronized control for coordination of multirobot assembly tasks.
#@Dong Sun,James K. Mills
#t2002
#cIEEE Transactions on Robotics
#index2877434
#% 
#!
  
#*Drive Train Optimization for Industrial Robots.
#@Marcus Pettersson,Johan Sölvander
#t2009
#cIEEE Transactions on Robotics
#index2877927
#% 
#!
  
#*A comparison study of two 3-DOF parallel manipulators: one with three and the other with four supporting legs.
#@Sameer A. Joshi,Lung-Wen Tsai
#t2003
#cIEEE Transactions on Robotics
#index2877822
#% 
#!
  
#*The Effects of Partial Observability When Building Fully Correlated Maps.
#@Juan Andrade-Cetto,Alberto Sanfeliu
#t2005
#cIEEE Transactions on Robotics
#index2877713
#% 
#!
  
#*Stabilization of multi-inventory systems with uncertain demand and setups.
#@Franco Blanchini,Stefano Miani,Raffaele Pesenti,Franca Rinaldi
#t2003
#cIEEE Transactions on Robotics
#index2877797
#% 
#!
  
#*Attitude control for a micromechanical flying insect via sensor output feedback.
#@Luca Schenato,Wei Chung Wu,Shankar Sastry
#t2004
#cIEEE Transactions on Robotics
#index2877544
#% 
#!
  
#*Mobility augmentation of conventional wheeled bases for omnidirectional motion.
#@Myung-Jin Jung,Jong-Hwan Kim
#t2002
#cIEEE Transactions on Robotics
#index2877445
#% 
#!
  
#*Transforming a surgical robot for human telesurgery.
#@Steven E. Butner,Moji Ghodoussi
#t2003
#cIEEE Transactions on Robotics
#index2877756
#% 
#!
  
#*Autonomous 3-D positioning of surgical instruments in robotized laparoscopic surgery using visual servoing.
#@Alexandre Krupa,Jacques Gangloff,Christophe Doignon,Michel de Mathelin,Guillaume Morel,Joël Leroy,Luc Soler,Jacques Marescaux
#t2003
#cIEEE Transactions on Robotics
#index2877815
#% 
#!
  
#*Cooperative transport by multiple mobile robots in unknown static environments associated with real-time task assignment.
#@Natsuki Miyata,Jun Ota,Tamio Arai,Hajime Asama
#t2002
#cIEEE Transactions on Robotics
#index2877519
#% 
#!
  
#*Dynamic rolling locomotion and control of modular robots.
#@Woo Ho Lee,Arthur C. Sanderson
#t2002
#cIEEE Transactions on Robotics
#index2877463
#% 
#!
  
#*Newton-Type Algorithms for Dynamics-Based Robot Movement Optimization.
#@Sung Hee Lee,Junggon Kim,Frank Chongwoo Park,Munsang Kim,James E. Bobrow
#t2005
#cIEEE Transactions on Robotics
#index2877609
#% 
#!
  
#*Distributed route planning for multiple mobile robots using an augmented Lagrangian decomposition and coordination technique.
#@Tatsushi Nishi,Masakazu Ando,Masami Konishi
#t2005
#cIEEE Transactions on Robotics
#index2877657
#% 
#!
  
#*Return Maps, Parameterization, and Cycle-Wise Planning of Yo-Yo Playing.
#@Hui-Liang Jin,Qian Ye,Miriam Zacksenhouse
#t2009
#cIEEE Transactions on Robotics
#index2877879
#%757845
#%1023041
#%3349009
#!
  
#*A Sensor-Based Controller for Homing of Underactuated AUVs.
#@Pedro Tiago Martins Batista,Carlos Silvestre,Paulo Oliveira
#t2009
#cIEEE Transactions on Robotics
#index2877834
#% 
#!
  
#*Design and experiment of a 3-DOF parallel micromechanism utilizing flexure hinges.
#@Byung-Ju Yi,Goo Bong Chung,Heung Yeol Na,Whee Kuk Kim,Il Hong Suh
#t2003
#cIEEE Transactions on Robotics
#index2877729
#% 
#!
  
#*Optimal planning for minimally invasive surgical robots.
#@Louaï Adhami,Ève Coste-Manière
#t2003
#cIEEE Transactions on Robotics
#index2877817
#% 
#!
  
#*Orientation and Workspace Analysis of the Multifingered Metamorphic Hand - Metahand.
#@Jian S. Dai,Delun Wang,Lei Cui
#t2009
#cIEEE Transactions on Robotics
#index2877929
#% 
#!
  
#*Stiffness and contact mechanics for soft fingers in grasping and manipulation.
#@Imin Kao,Fuqian Yang
#t2004
#cIEEE Transactions on Robotics
#index2877539
#% 
#!
  
#*Flat Dry Elastomer Adhesives as Attachment Materials for Climbing Robots.
#@Ozgur Unver,Metin Sitti
#t2010
#cIEEE Transactions on Robotics
#index2877975
#%685645
#%919837
#%1195668
#%1231587
#%1274155
#!
  
#*Human-Intent Detection and Physically Interactive Control of a Robot Without Force Sensors.
#@M. S. Erden,T. Tomiyama
#t2010
#cIEEE Transactions on Robotics
#index2878002
#%758096
#%1195537
#!
  
#*Improving the Human-Robot Interface Through Adaptive Multispace Transformation.
#@Luis Miguel Muñoz,Alicia Casals
#t2009
#cIEEE Transactions on Robotics
#index2877824
#%87331
#%88513
#%90889
#%1116910
#!
  
#*Sampled Data Systems Passivity and Discrete Port-Hamiltonian Systems.
#@Stefano Stramigioli,Cristian Secchi,Arjan van der Schaft,Cesare Fantuzzi
#t2005
#cIEEE Transactions on Robotics
#index2877622
#% 
#!
  
#*Sensorless Position Control Using Feedforward Internal Force for Completely Restrained Parallel-Wire-Driven Systems.
#@Hitoshi Kino,Toshiaki Yahiro,Shohei Taniguchi,Kenji Tahara
#t2009
#cIEEE Transactions on Robotics
#index2877880
#%3348924
#!
  
#*Extending the Limits of Feature-Based SLAM With B-Splines.
#@Luis Pedraza,Diego Rodríguez-Losada,Fernando Matía,Gamini Dissanayake,Jaime Valls Miró
#t2009
#cIEEE Transactions on Robotics
#index2877861
#%1152336
#!
  
#*Dynamic sliding PID control for tracking of robot manipulators: theory and experiments.
#@Vicente Parra-Vega,Suguru Arimoto,Yun-Hui Liu,Gerd Hirzinger,Prasad Akella
#t2003
#cIEEE Transactions on Robotics
#index2877751
#% 
#!
  
#*High-fidelity passive force-reflecting virtual environments.
#@Mohsen Mahvash,Vincent Hayward
#t2005
#cIEEE Transactions on Robotics
#index2877664
#% 
#!
  
#*An Integrated System for User-Adaptive Robotic Grasping.
#@M. Ralph,M. A. Moussa
#t2010
#cIEEE Transactions on Robotics
#index2877983
#%13599
#%691597
#%691583
#%691789
#%691776
#%874509
#!
  
#*Friction estimation by pressing an elastic finger-shaped sensor against a surface.
#@Takashi Maeno,Tomoyuki Kawamura,Sen-Chieh Cheng
#t2004
#cIEEE Transactions on Robotics
#index2877595
#% 
#!
  
#*Geometrical Optimization of Parallel Mechanisms Based on Natural Frequency Evaluation: Application to a Spherical Mechanism for Future Space Applications.
#@Carlo Menon,Rocco Vertechy,Miháli Csaba Markót,Vincenzo Parenti-Castelli
#t2009
#cIEEE Transactions on Robotics
#index2877939
#%3579
#%1195483
#!
  
#*Temporal-Logic-Based Reactive Mission and Motion Planning.
#@Hadas Kress-Gazit,Georgios E. Fainekos,George J. Pappas
#t2009
#cIEEE Transactions on Robotics
#index2877837
#% 
#!
  
#*A Reconfigurable Robot With Lockable Cylindrical Joints.
#@Farhad Aghili,Kourosh Parsa
#t2009
#cIEEE Transactions on Robotics
#index2877919
#% 
#!
  
#*Design and Analysis of a Totally Decoupled Flexure-Based XY Parallel Micromanipulator.
#@Yangmin Li,Qingsong Xu
#t2009
#cIEEE Transactions on Robotics
#index2877891
#%1195208
#!
  
#*A hybrid strategy to solve the forward kinematics problem in parallel manipulators.
#@Pratik J. Parikh,Sarah S. Y. Lam
#t2005
#cIEEE Transactions on Robotics
#index2877708
#% 
#!
  
#*Jerk-bounded manipulator trajectory planning: design for real-time applications.
#@Sonja E. Macfarlane,Elizabeth A. Croft
#t2003
#cIEEE Transactions on Robotics
#index2877742
#% 
#!
  
#*Motion feasibility of multi-agent formations.
#@Paulo Tabuada,George J. Pappas,Pedro U. Lima
#t2005
#cIEEE Transactions on Robotics
#index2877530
#% 
#!
  
#*Kinematic feasibility analysis of 3-D multifingered grasps.
#@Yisheng Guan,Hong Zhang
#t2003
#cIEEE Transactions on Robotics
#index2877804
#% 
#!
  
#*Swing-Up Control of the Pendubot: An Impulse-Momentum Approach.
#@Thamer Albahkali,Ranjan Mukherjee,Tuhin Das
#t2009
#cIEEE Transactions on Robotics
#index2877946
#% 
#!
  
#*Robust vision-based localization by combining an image-retrieval system with Monte Carlo localization.
#@Jürgen Wolf,Wolfram Burgard,Hans Burkhardt
#t2005
#cIEEE Transactions on Robotics
#index2877533
#% 
#!
  
#*Type synthesis of 3T1R 4-DOF parallel manipulators based on screw theory.
#@Xianwen Kong,Clément M. Gosselin
#t2004
#cIEEE Transactions on Robotics
#index2877600
#% 
#!
  
#*Robot steering with spectral image information.
#@Christopher Ackerman,Laurent Itti
#t2005
#cIEEE Transactions on Robotics
#index2877651
#% 
#!
  
#*Experimental Study on Advanced Underwater Robot Control.
#@Side Zhao,Junku Yuh
#t2005
#cIEEE Transactions on Robotics
#index2877652
#% 
#!
  
#*Localization: Approximation and Performance Bounds to Minimize Travel Distance.
#@Craig A. Tovey,Sven Koenig
#t2010
#cIEEE Transactions on Robotics
#index2877995
#%15249
#%211181
#%515973
#%610675
#%757907
#%803562
#%804060
#%887010
#%887854
#%1274217
#%1341511
#!
  
#*Optimal sweeping paths on a 2-manifold: a new class of optimization problems defined by path structures.
#@Taejung Kim,Sanjay E. Sarma
#t2003
#cIEEE Transactions on Robotics
#index2877717
#% 
#!
  
#*Distributed performance evaluation of a controlled IC fab.
#@Chung-Hsien Kuo,Han-Pang Huang
#t2003
#cIEEE Transactions on Robotics
#index2877776
#% 
#!
  
#*SHaDe, a new 3-DOF haptic device.
#@Lionel Birglen,Clément Gosselin,Nicolas Pouliot,Bruno Monsarrat,Thierry Laliberté
#t2002
#cIEEE Transactions on Robotics
#index2877453
#% 
#!
  
#*Estimation of Terrain Forces and Parameters for Rigid-Wheeled Vehicles.
#@Laura E. Ray
#t2009
#cIEEE Transactions on Robotics
#index2877954
#%3355215
#!
  
#*Experimental comparison of some classical iterative learning control algorithms.
#@Mikael Norrlöf,Svante Gunnarsson
#t2002
#cIEEE Transactions on Robotics
#index2877511
#% 
#!
  
#*Design and kinematics of a three-legged parallel manipulator.
#@Peter B. Goldsmith
#t2003
#cIEEE Transactions on Robotics
#index2877765
#% 
#!
  
#*Active Stereo Tracking of Nle 3 Targets Using Line Scan Cameras.
#@Joán P. Barreto,Luis Perdigoto,Rui Caseiro,Helder Araújo
#t2010
#cIEEE Transactions on Robotics
#index2878021
#% 
#!
  
#*Continuous-time restless bandit and dynamic scheduling for make-to-stock production.
#@Fabrice Dusonchet,Max-Olivier Hongler
#t2003
#cIEEE Transactions on Robotics
#index2877792
#% 
#!
  
#*Stiffness estimation of a tripod-based parallel kinematic machine.
#@Tian Huang,Xingyu Zhao,David J. Whitehouse
#t2002
#cIEEE Transactions on Robotics
#index2877472
#% 
#!
  
#*A Reactive Robotized Interface for Lower Limb Rehabilitation: Clinical Results.
#@Ludovic Saint-Bauzel,Viviane Pasqui,Isabelle Monteil
#t2009
#cIEEE Transactions on Robotics
#index2877871
#%1077695
#!
  
#*Motion planning for anguilliform locomotion.
#@Kenneth A. McIsaac,James P. Ostrowski
#t2003
#cIEEE Transactions on Robotics
#index2877814
#% 
#!
  
#*Constructing reconfigurable software for machine control systems.
#@Shige Wang,Kang G. Shin
#t2002
#cIEEE Transactions on Robotics
#index2877435
#% 
#!
  
#*NIMS-PL: A Cable-Driven Robot With Self-Calibration Capabilities.
#@Per Henrik Borgstrom,Brett L. Jordan,Bengt J. Borgstrom,Michael J. Stealey,Gaurav S. Sukhatme,Maxim A. Batalin,William J. Kaiser
#t2009
#cIEEE Transactions on Robotics
#index2877849
#% 
#!
  
#*Microrobotic Visual Control of Motile Cells Using High-Speed Tracking System.
#@Naoko Ogawa,Hiromasa Oku,Koichi Hashimoto,Masatoshi Ishikawa
#t2005
#cIEEE Transactions on Robotics
#index2877694
#% 
#!
  
#*Kinematic-Sensitivity Indices for Dimensionally Nonhomogeneous Jacobian Matrices.
#@Philippe Cardou,Samuel Bouchard,Clément Gosselin
#t2010
#cIEEE Transactions on Robotics
#index2877963
#% 
#!
  
#*Continuous visual servoing despite the changes of visibility in image features.
#@Nicolás García Aracil,Ezio Malis,Rafael Aracil,Carlos Perez-Vidal
#t2005
#cIEEE Transactions on Robotics
#index2877672
#% 
#!
  
#*A decentralized approach to formation maneuvers.
#@Jonathan R. Lawton,Randal W. Beard,Brett J. Young
#t2003
#cIEEE Transactions on Robotics
#index2877801
#% 
#!
  
#*A Unified Approach to Integrate Unilateral Constraints in the Stack of Tasks.
#@Nicolas Mansard,Oussama Khatib,Oussama Kheddar
#t2009
#cIEEE Transactions on Robotics
#index2877934
#%1136390
#%1195074
#!
  
#*Rapid Computation of Optimally Safe Tension Distributions for Parallel Cable-Driven Robots.
#@Per Henrik Borgstrom,Brett L. Jordan,Gaurav S. Sukhatme,Maxim A. Batalin,William J. Kaiser
#t2009
#cIEEE Transactions on Robotics
#index2877948
#% 
#!
  
#*Visual servoing of an under-actuated dynamic rigid-body system: an image-based approach.
#@Tarek Hamel,Robert E. Mahony
#t2002
#cIEEE Transactions on Robotics
#index2877513
#% 
#!
  
#*Dynamic Manipulation Inspired by the Handling of a Pizza Peel.
#@Mitsuru Higashimori,Keisuke Utsumi,Yasutaka Omoto,Makoto Kaneko
#t2009
#cIEEE Transactions on Robotics
#index2877823
#% 
#!
  
#*Motion planning of a climbing parallel robot.
#@Miguel Almonacid,Roque J. Saltarén,Rafael Aracil,Óscar Reinoso
#t2003
#cIEEE Transactions on Robotics
#index2877714
#% 
#!
  
#*Effective Maximum Likelihood Grid Map With Conflict Evaluation Filter Using Sonar Sensors.
#@Kyoungmin Lee,Wan Kyun Chung
#t2009
#cIEEE Transactions on Robotics
#index2877943
#% 
#!
  
#*Divergence of linear acceleration-based redundancy resolution schemes.
#@Kevin A. O'Neil
#t2002
#cIEEE Transactions on Robotics
#index2877475
#% 
#!
  
#*Motion Planning With Dynamics by a Synergistic Combination of Layers of Planning.
#@Erion Plaku,Lydia E. Kavraki,Moshe Y. Vardi
#t2010
#cIEEE Transactions on Robotics
#index2877990
#%745852
#%803493
#%879149
#%919837
#%1306708
#%1306813
#%1307030
#%1313003
#%1313245
#%1320649
#%3002009
#!
  
#*Dynamic Modeling and Control of Biologically Inspired Vortex Ring Thrusters for Underwater Robot Locomotion.
#@Michael Krieg,Kamran Mohseni
#t2010
#cIEEE Transactions on Robotics
#index2877968
#%3120470
#!
  
#*Bone-mounted miniature robot for surgical procedures: Concept and clinical applications.
#@Moshe Shoham,Michael Burman,Eli Zehavi,Leo Joskowicz,Eduard Batkilin,Yigal Kunicher
#t2003
#cIEEE Transactions on Robotics
#index2877762
#% 
#!
  
#*Differential-drive in-pipe robot for moving inside urban gas pipelines.
#@Se-gon Roh,Hyouk Ryeol Choi
#t2005
#cIEEE Transactions on Robotics
#index2877644
#% 
#!
  
#*Climbing parallel robot: a computational and experimental study of its performance around structural nodes.
#@Roque J. Saltarén,Rafael Aracil,Óscar Reinoso,Maria Antonieta Scarano
#t2005
#cIEEE Transactions on Robotics
#index2877720
#% 
#!
  
#*Global Output Tracking Control of Flexible Joint Robots via Factorization of the Manipulator Mass Matrix.
#@Khoder Melhem,Wilson Wang
#t2009
#cIEEE Transactions on Robotics
#index2877828
#%3348939
#%3354476
#!
  
#*Numerical optimization on the Euclidean group with applications to camera calibration.
#@Seungwoong Gwak,Junggon Kim,Frank Chongwoo Park
#t2003
#cIEEE Transactions on Robotics
#index2877703
#% 
#!
  
#*Wire-suspended dynamical system: stability analysis by tension-closure.
#@Jonghoon Park,Wan Kyun Chung,Wonkyu Moon
#t2005
#cIEEE Transactions on Robotics
#index2877681
#% 
#!
  
#*Hormone-inspired adaptive communication and distributed control for CONRO self-reconfigurable robots.
#@Wei-Min Shen,Behnam Salemi,Peter M. Will
#t2002
#cIEEE Transactions on Robotics
#index2877426
#% 
#!
  
#*A sufficient condition for manipulation of Envelope Family.
#@Kensuke Harada,Makoto Kaneko,Toshio Tsuji
#t2002
#cIEEE Transactions on Robotics
#index2877493
#% 
#!
  
#*Modeling and control of cooperative teleoperation systems.
#@Shahin Sirouspour
#t2005
#cIEEE Transactions on Robotics
#index2877630
#% 
#!
  
#*A Miniature Mobile Robot for Navigation and Positioning on the Beating Heart.
#@Nicholas A. Patronik,Takeyoshi Ota,Marco A. Zenati,Cameron N. Riviere
#t2009
#cIEEE Transactions on Robotics
#index2877843
#%920504
#!
  
#*Decentralized control of cooperative robotic vehicles: theory and application.
#@John T. Feddema,Chris Lewis,David A. Schoenwald
#t2002
#cIEEE Transactions on Robotics
#index2877490
#% 
#!
  
#*A sensor fusion approach for recognizing continuous human grasping sequences using hidden Markov models.
#@Keni Bernardin,Koichi Ogawara,Katsushi Ikeuchi,Rüdiger Dillmann
#t2005
#cIEEE Transactions on Robotics
#index2877623
#% 
#!
  
#*Connection Mechanism for Autonomous Self-Assembly in Mobile Robots.
#@Mehdi Delrobaei,Kenneth A. McIsaac
#t2009
#cIEEE Transactions on Robotics
#index2877862
#% 
#!
  
#*AcuBot: a robot for radiological interventions.
#@Dan Stoianovici,Kevin Cleary,Alexandru Patriciu,Dumitru Mazilu,Alexandru Stanimir,Nicolae Craciunoiu,Vance Watson,Louis R. Kavoussi
#t2003
#cIEEE Transactions on Robotics
#index2877737
#% 
#!
  
#*Source Seeking for Two Nonholonomic Models of Fish Locomotion.
#@Jennie Cochran,Eva Kanso,Scott D. Kelly,Hailong Xiong,Miroslav Krstic
#t2009
#cIEEE Transactions on Robotics
#index2877898
#%1180747
#%1181684
#%2877895
#!
  
#*On computing three-finger force-closure grasps of 2-D and 3-D objects.
#@Jia-Wei Li,Hong Liu,Hegao Cai
#t2003
#cIEEE Transactions on Robotics
#index2877759
#% 
#!
  
#*Fault-accommodating thruster force allocation of an AUV considering thruster redundancy and saturation.
#@Nilanjan Sarkar,Tarun Kanti Podder,Gianluca Antonelli
#t2002
#cIEEE Transactions on Robotics
#index2877470
#% 
#!
  
#*Proxy-Based Sliding Mode Control: A Safer Extension of PID Position Control.
#@Ryo Kikuuwe,S. Yasukouchi,Hideo Fujimoto,Motoji Yamamoto
#t2010
#cIEEE Transactions on Robotics
#index2878024
#%593902
#%901142
#%1274298
#%3354452
#%3354496
#%3355050
#%3355977
#!
  
#*A motion-planning approach to folding: from paper craft to protein folding.
#@Guang Song,Nancy M. Amato
#t2004
#cIEEE Transactions on Robotics
#index2877566
#% 
#!
  
#*Partner selection and synchronized planning in dynamic manufacturing networks.
#@Nukala Viswanadham,Roshan Shivanand Gaonkar
#t2003
#cIEEE Transactions on Robotics
#index2877770
#% 
#!
  
#*Polyhedral contact formation identification for autonomous compliant motion: exact nonlinear bayesian filtering.
#@Tine Lefebvre,Herman Bruyninckx,Joris De Schutter
#t2005
#cIEEE Transactions on Robotics
#index2877650
#% 
#!
  
#*Mechatronic design of an actuated biomimetic length and velocity sensor.
#@Kristen N. Jaax,Blake Hannaford
#t2004
#cIEEE Transactions on Robotics
#index2877547
#% 
#!
  
#*Stable fault adaptation in distributed control of heterarchical manufacturing job shops.
#@Vittaldas V. Prabhu
#t2003
#cIEEE Transactions on Robotics
#index2877787
#% 
#!
  
#*Visually guided landing of an unmanned aerial vehicle.
#@Srikanth Saripalli,James F. Montgomery,Gaurav S. Sukhatme
#t2003
#cIEEE Transactions on Robotics
#index2877748
#% 
#!
  
#*A numerical test for the closure properties of 3-D grasps.
#@Xiangyang Zhu,Han Ding,Michael Yu Wang
#t2004
#cIEEE Transactions on Robotics
#index2877580
#% 
#!
  
#*Invariant Trajectory Tracking With a Full-Size Autonomous Road Vehicle.
#@Moritz Werling,Lutz Gröll,Georg Bretthauer
#t2010
#cIEEE Transactions on Robotics
#index2877982
#%1195673
#%2877897
#!
  
#*Nonlinear and Filtered Force/Position Mappings in Bilateral Teleoperation With Application to Enhanced Stiffness Discrimination.
#@Pawel Malysz,Shahin Sirouspour
#t2009
#cIEEE Transactions on Robotics
#index2877820
#%920069
#%1077584
#!
  
#*1T2R Parallel Mechanisms Without Parasitic Motion.
#@Qinchuan Li,Jacques Marie Hervé
#t2010
#cIEEE Transactions on Robotics
#index2878019
#%919901
#%1195113
#%1195393
#%2877872
#%2877945
#%3168925
#%3643827
#!
  
#*Motion planning using adaptive random walks.
#@Stefano Carpin,Gianluigi Pillonetto
#t2005
#cIEEE Transactions on Robotics
#index2877695
#% 
#!
  
#*Revising the Robust-Control Design for Rigid Robot Manipulators.
#@Luca Bascetta,Paolo Rocco
#t2010
#cIEEE Transactions on Robotics
#index2878010
#% 
#!
  
#*Mechanics of Precurved-Tube Continuum Robots.
#@Robert J. Webster,Joseph M. Romano,Noah J. Cowan
#t2009
#cIEEE Transactions on Robotics
#index2877890
#%920575
#%3077330
#!
  
#*Using Haptic Feedback to Improve Grasp Force Control in Multiple Sclerosis Patients.
#@Li Jiang,Mark R. Cutkosky,Juhani Ruutiainen,Roope Raisamo
#t2009
#cIEEE Transactions on Robotics
#index2877884
#%238478
#%1043375
#%1043575
#!
  
#*A parameter variation modeling approach for enterprise optimization.
#@Michael Masin,Nazrul I. Shaikh,Richard A. Wysk
#t2003
#cIEEE Transactions on Robotics
#index2877779
#% 
#!
  
#*A new high-speed 4-DOF parallel robot synthesis and modeling issues.
#@Olivier Company,Frédéric Marquet,François Pierrot
#t2003
#cIEEE Transactions on Robotics
#index2877715
#% 
#!
  
#*Stratified motion planning on nonsmooth domains with robotic applications.
#@Yejun Wei,Bill Goodwine
#t2004
#cIEEE Transactions on Robotics
#index2877586
#% 
#!
  
#*Motion Synchronization Control of Distributed Multisubsystems With Invariant Local Natural Dynamics.
#@Joono Cheong,Silviu-Iulian Niculescu,Chano Kim
#t2009
#cIEEE Transactions on Robotics
#index2877957
#%238509
#%805584
#%1043354
#%1133953
#!
  
#*Decoupled Image-Based Visual Servoing for Cameras Obeying the Unified Projection Model.
#@Omar Tahri,Youcef Mezouar,François Chaumette,Peter Corke
#t2010
#cIEEE Transactions on Robotics
#index2877992
#%907590
#%908600
#%1032374
#%1307063
#%2868028
#%2877850
#!
  
#*Design for robust component synthesis vibration suppression of flexible structures with on-off actuators.
#@Jinjun Shan,Dong Sun,Dun Liu
#t2004
#cIEEE Transactions on Robotics
#index2877601
#% 
#!
  
#*A framework for implementing cooperative motion on industrial controllers.
#@Barbara M. Braun,Gregory P. Starr,John E. Wood,Ron Lumia
#t2004
#cIEEE Transactions on Robotics
#index2877561
#% 
#!
  
#*An H control-based approach to robust control of mechanical systems with oscillatory bases.
#@Masayoshi Toda
#t2004
#cIEEE Transactions on Robotics
#index2877541
#% 
#!
  
#*Omnidirectional static walking of a quadruped robot.
#@Shugen Ma,Takashi Tomiyama,Hideyuki Wada
#t2005
#cIEEE Transactions on Robotics
#index2877637
#% 
#!
  
#*Stability Analysis for Prioritized Closed-Loop Inverse Kinematic Algorithms for Redundant Robotic Systems.
#@Gianluca Antonelli
#t2009
#cIEEE Transactions on Robotics
#index2877921
#%3004698
#%758147
#!
  
#*Performance analysis of a 3-2-1 pose estimation device.
#@Federico Thomas,Erika Ottaviano,Lluís Ros,Marco Ceccarelli
#t2005
#cIEEE Transactions on Robotics
#index2877723
#% 
#!
  
#*Motion planning for metamorphic systems: feasibility, decidability, and distributed reconfiguration.
#@Adrian Dumitrescu,Ichiro Suzuki,Masafumi Yamashita
#t2004
#cIEEE Transactions on Robotics
#index2877583
#% 
#!
  
#*On Delta -Transforms.
#@Júlia Borràs Sol,Federico Thomas,Carme Torras Genís
#t2009
#cIEEE Transactions on Robotics
#index2877899
#% 
#!
  
#*A life cycle engineering approach to development of flexible manufacturing systems.
#@Pingtao Yan,MengChu Zhou
#t2003
#cIEEE Transactions on Robotics
#index2877734
#% 
#!
  
#*New dimensionally homogeneous Jacobian matrix formulation by three end-effector points for optimal design of parallel manipulators.
#@Sung-Gaun Kim,Jeha Ryu
#t2003
#cIEEE Transactions on Robotics
#index2877773
#% 
#!
  
#*Self-Aligning Exoskeleton Axes Through Decoupling of Joint Rotations and Translations.
#@Arno H. A. Stienen,Edsko E. G. Hekman,Frans C. T. van der Helm,Herman van der Kooij
#t2009
#cIEEE Transactions on Robotics
#index2877876
#%238456
#!
  
#*Qualitative Vision-Based Path Following.
#@Zhichao Chen,Stanley T. Birchfield
#t2009
#cIEEE Transactions on Robotics
#index2877863
#%98479
#%335351
#%744525
#%771673
#%908107
#%908370
#%1031459
#%1050497
#!
  
#*Design of reactionless 3-DOF and 6-DOF parallel manipulators using parallelepiped mechanisms.
#@Yangnian Wu,Clément Gosselin
#t2005
#cIEEE Transactions on Robotics
#index2877620
#% 
#!
  
#*Concurrent metamorphosis of hexagonal robot chains into simple connected configurations.
#@Jennifer E. Walter,Jennifer L. Welch,Nancy M. Amato
#t2002
#cIEEE Transactions on Robotics
#index2877432
#% 
#!
  
#*Distributed surveillance and reconnaissance using multiple autonomous ATVs: CyberScout.
#@Mahesh Saptharishi,C. Spence Oliver,Christopher P. Diehl,Kiran S. Bhat,John M. Dolan,Ashitey Trebi-Ollennu,Pradeep K. Khosla
#t2002
#cIEEE Transactions on Robotics
#index2877480
#% 
#!
  
#*A Highly Backdrivable, Lightweight Knee Actuator for Investigating Gait in Stroke.
#@James S. Sulzer,Ronald A. Roiz,Michael A. Peshkin,James L. Patton
#t2009
#cIEEE Transactions on Robotics
#index2877956
#%920554
#!
  
#*Adaptive Task-Space Tracking Control of Robots Without Task-Space- and Joint-Space-Velocity Measurements.
#@X. Liang,X. Huang,M. Wang,X. Zeng
#t2010
#cIEEE Transactions on Robotics
#index2878013
#%758147
#%919927
#%1274249
#%3355735
#!
  
#*A method for the study of position in highly redundant multibody systems in environments with obstacles.
#@Josu Agirrebeitia,Rafael Avilés,Igor Fernandez de Bustos,Goizalde Ajuria
#t2002
#cIEEE Transactions on Robotics
#index2877505
#% 
#!
  
#*Motion planning for disc-shaped robots pushing a polygonal object in the plane.
#@Attawith Sudsang,Fredrick H. Rothganger,Jean Ponce
#t2002
#cIEEE Transactions on Robotics
#index2877461
#% 
#!
  
#*Toward Relative Mass With a Pulley-Based Differential Transmission.
#@Leo J. Stocco,Matthew J. Yedlin
#t2009
#cIEEE Transactions on Robotics
#index2877840
#% 
#!
  
#*The Role of Modular Robotics in Mediating Nonverbal Social Exchanges.
#@Patrizia Marti,Leonardo Giusti,Henrik Hautop Lund
#t2009
#cIEEE Transactions on Robotics
#index2877848
#%1135900
#%3103521
#!
  
#*Adaptive Force-Motion Control of Coordinated Robots Interacting With Geometrically Unknown Environments.
#@Mehrzad Namvar,Farhad Aghili
#t2005
#cIEEE Transactions on Robotics
#index2877658
#% 
#!
  
#*Image-Based Visual Servo Control of the Translation Kinematics of a Quadrotor Aerial Vehicle.
#@Odile Bourquardez,Robert E. Mahony,Nicolas Guenard,François Chaumette,Tarek Hamel,Laurent Eck
#t2009
#cIEEE Transactions on Robotics
#index2877893
#%919863
#%1180984
#!
  
#*Measure theoretic analysis of probabilistic path planning.
#@Andrew M. Ladd,Lydia E. Kavraki
#t2004
#cIEEE Transactions on Robotics
#index2877593
#% 
#!
  
#*Sampling-Based Roadmap of Trees for Parallel Motion Planning.
#@Erion Plaku,Kostas E. Bekris,Brian Y. Chen,Andrew M. Ladd,Lydia E. Kavraki
#t2005
#cIEEE Transactions on Robotics
#index2877709
#% 
#!
  
#*Performance of a distributed robotic system using shared communications channels.
#@Paul E. Rybski,Sascha Stoeter,Maria L. Gini,Dean F. Hougen,Nikolaos Papanikolopoulos
#t2002
#cIEEE Transactions on Robotics
#index2877510
#% 
#!
  
#*A neurofuzzy approach to the control of a flexible-link manipulator.
#@Ferry Marga Caswara,Heinz Unbehauen
#t2002
#cIEEE Transactions on Robotics
#index2877491
#% 
#!
  
#*Vision-Based, Distributed Control Laws for Motion Coordination of Nonholonomic Robots.
#@Nima Moshtagh,Nathan Michael,Ali Jadbabaie,Kostas Daniilidis
#t2009
#cIEEE Transactions on Robotics
#index2877912
#% 
#!
  
#*Fast Generation of Multiple Collision-Free and Linear Trajectories in Dynamic Environments.
#@Enrique J. Bernabeu
#t2009
#cIEEE Transactions on Robotics
#index2877826
#%593389
#%1119196
#%1134194
#%1195659
#%2839815
#%3002009
#!
  
#*Design and Implementation of NIMS3D, a 3-D Cabled Robot for Actuated Sensing Applications.
#@Per Henrik Borgstrom,Nils Peter Borgstrom,Michael J. Stealey,Brett L. Jordan,Gaurav S. Sukhatme,Maxim A. Batalin,William J. Kaiser
#t2009
#cIEEE Transactions on Robotics
#index2877935
#%1013561
#!
  
#*Revisiting trilateration for robot localization.
#@Federico Thomas,Lluís Ros
#t2005
#cIEEE Transactions on Robotics
#index2877673
#% 
#!
  
#*Impedance Compensation of SUBAR for Back-Drivable Force-Mode Actuation.
#@Kyoungchul Kong,Hyosang Moon,Beomsoo Hwang,Doyoung Jeon,Masayoshi Tomizuka
#t2009
#cIEEE Transactions on Robotics
#index2877904
#% 
#!
  
#*A hybrid scheduling and control system architecture for warehouse management.
#@Byung-In Kim,Sunderesh S. Heragu,Robert J. Graves,Art St. Onge
#t2003
#cIEEE Transactions on Robotics
#index2877809
#% 
#!
  
#*Autonomous vehicle positioning with GPS in urban canyon environments.
#@Youjing Cui,Shuzhi Sam Ge
#t2003
#cIEEE Transactions on Robotics
#index2877758
#% 
#!
  
#*Hybrid kinematic and dynamic simulation of running machines.
#@Wei Hu,Duane W. Marhefka,David E. Orin
#t2005
#cIEEE Transactions on Robotics
#index2877642
#% 
#!
  
#*A generalized stochastic Petri net model for performance analysis and control of capacitated reentrant lines.
#@Jin-Young Choi,Spyros A. Reveliotis
#t2003
#cIEEE Transactions on Robotics
#index2877754
#% 
#!
  
#*A Fundamental Study of Wing Actuation for a 6-in-Wingspan Flapping Microaerial Vehicle.
#@Masaki Hamamoto,Yoshiji Ohta,Keita Hara,Toshiaki Hisada
#t2010
#cIEEE Transactions on Robotics
#index2878004
#% 
#!
  
#*Identification of Contact Dynamics Parameters for Stiff Robotic Payloads.
#@Diederik Verscheure,Inna Sharf,Herman Bruyninckx,Jan Swevers,Joris De Schutter
#t2009
#cIEEE Transactions on Robotics
#index2877831
#%1151415
#!
  
#*Output regulation of robot manipulators with a constantly revolving arm.
#@Shang-Teh Wu,Yi-Chih Chuang
#t2003
#cIEEE Transactions on Robotics
#index2877806
#% 
#!
  
#*General-Weighted Least-Norm Control for Redundant Manipulators.
#@J. Xiang,C. Zhong,W. Wei
#t2010
#cIEEE Transactions on Robotics
#index2877999
#%2877934
#!
  
#*Needle Insertion Parameter Optimization for Brachytherapy.
#@Ehsan Dehghan,Septimiu E. Salcudean
#t2009
#cIEEE Transactions on Robotics
#index2877949
#%497435
#%497536
#%920575
#!
  
#*An Adaptive Automated Robotic Task-Practice System for Rehabilitation of Arm Functions After Stroke.
#@Younggeun Choi,James Gordon,Duckho Kim,Nicolas Schweighofer
#t2009
#cIEEE Transactions on Robotics
#index2877870
#%238532
#%238905
#%1023508
#%1043557
#!
  
#*Information entropy-based viewpoint planning for 3-D object reconstruction.
#@Youfu Li,Z. G. Liu
#t2005
#cIEEE Transactions on Robotics
#index2877659
#% 
#!
  
#*Consistency verification in modeling of real-time systems.
#@Yi Deng,Jiacun Wang,Mengchu Zhou
#t2004
#cIEEE Transactions on Robotics
#index2877587
#% 
#!
  
#*A Darboux-Frame-Based Formulation of Spin-Rolling Motion of Rigid Objects With Point Contact.
#@Lei Cui,Jian S. Dai
#t2010
#cIEEE Transactions on Robotics
#index2877962
#%920333
#%920453
#!
  
#*Geometric scattering in robotic telemanipulation.
#@Stefano Stramigioli,Arjan van der Schaft,Bernhard Maschke,Claudio Melchiorri
#t2002
#cIEEE Transactions on Robotics
#index2877474
#% 
#!
  
#*The Flying Brick: A Cautionary Note on Testing Flying Robots Using Guide Wires.
#@Michele Milano,David Jurjevich,Ronald Adrian
#t2009
#cIEEE Transactions on Robotics
#index2877845
#% 
#!
  
#*Coordinated Kinematic Control of Compliantly Coupled Multirobot Systems in an Array Format.
#@Y. Kim,M. A. Minor
#t2010
#cIEEE Transactions on Robotics
#index2877991
#%758055
#%920007
#!
  
#*Strategies for Humanoid Robots to Dynamically Walk Over Large Obstacles.
#@Olivier Stasse,Björn Verrelst,Bram Vanderborght,Kazuhito Yokoi
#t2009
#cIEEE Transactions on Robotics
#index2877896
#% 
#!
  
#*Mode-shape compensator for improving robustness of manipulator mounted on flexible base.
#@Jun Ueda,Tsuneo Yoshikawa
#t2004
#cIEEE Transactions on Robotics
#index2877549
#% 
#!
  
#*Visual Servo Control Achieving Nanometer Resolution in X - Y - Z.
#@Jung H. Kim,Chia-Hsiang Menq
#t2009
#cIEEE Transactions on Robotics
#index2877955
#%1032558
#%3002942
#!
  
#*Interference-free polyhedral configurations for stacking.
#@Venkateswara R. Ayyadevara,David A. Bourne,Kenji Shimada,Robert H. Sturges
#t2002
#cIEEE Transactions on Robotics
#index2877485
#% 
#!
  
#*Optimized Stochastic Policies for Task Allocation in Swarms of Robots.
#@Spring Berman,Ádám M. Halász,M. Ani Hsieh,Vijay Kumar
#t2009
#cIEEE Transactions on Robotics
#index2877882
#% 
#!
  
#*Quadratically convergent algorithms for optimal dextrous hand grasping.
#@Uwe Helmke,Knut Hüper,John B. Moore
#t2002
#cIEEE Transactions on Robotics
#index2877471
#% 
#!
  
#*Iterative-Learning Hybrid Force/Velocity Control for Contour Tracking.
#@Antonio Visioli,Giacomo Ziliani,Giovanni Legnani
#t2010
#cIEEE Transactions on Robotics
#index2878011
#% 
#!
  
#*Robust supervisory control policies for manufacturing systems with unreliable resources.
#@Mark A. Lawley,Widodo Sulistyono
#t2002
#cIEEE Transactions on Robotics
#index2877425
#% 
#!
  
#*Hierarchical SLAM: Real-Time Accurate Mapping of Large Environments.
#@Carlos Estrada,José Neira,Juan D. Tardós
#t2005
#cIEEE Transactions on Robotics
#index2877669
#% 
#!
  
#*Time Parameterization of Humanoid-Robot Paths.
#@Wael Suleiman,Fumio Kanehiro,Eiichi Yoshida,Jean-Paul Laumond,André Monin
#t2010
#cIEEE Transactions on Robotics
#index2877969
#%383439
#%434744
#%920382
#!
  
#*Kinetostatic analysis of underactuated fingers.
#@Lionel Birglen,Clément M. Gosselin
#t2004
#cIEEE Transactions on Robotics
#index2877572
#% 
#!
  
#*A framework for the stabilization of general nonholonomic systems with an application to the plate-ball mechanism.
#@Giuseppe Oriolo,Marilena Vendittelli
#t2005
#cIEEE Transactions on Robotics
#index2877527
#% 
#!
  
#*Polyhedral contact formation modeling and identification for autonomous compliant motion.
#@Tine Lefebvre,Herman Bruyninckx,Joris De Schutter
#t2003
#cIEEE Transactions on Robotics
#index2877795
#% 
#!
  
#*Spatial stiffness realization with parallel springs using geometric parameters.
#@Kinkwan Choi,Shilong Jiang,Zexiang Li
#t2002
#cIEEE Transactions on Robotics
#index2877516
#% 
#!
  
#*Intrinsic Wrench Estimation and Its Performance Index for Multisegment Continuum Robots.
#@Kai Xu,Nabil Simaan
#t2010
#cIEEE Transactions on Robotics
#index2878025
#%238683
#%238806
#%497353
#%920519
#!
  
#*Image Guidance of Flexible Tip-Steerable Needles.
#@Vinutha Kallem,Noah J. Cowan
#t2009
#cIEEE Transactions on Robotics
#index2877920
#%356237
#%835001
#%920575
#%1195072
#!
  
#*Control of a Speech Robot via an Optimum Neural-Network-Based Internal Model With Constraints.
#@I. V. Blagouchine,E. Moreau
#t2010
#cIEEE Transactions on Robotics
#index2878005
#% 
#!
  
#*Synthesis and design of reactionless three-degree-of-freedom parallel mechanisms.
#@Clément M. Gosselin,Frank Vollmer,Gabriel Cote,Yangnian Wu
#t2004
#cIEEE Transactions on Robotics
#index2877546
#% 
#!
  
#*Ground-space bilateral teleoperation of ETS-VII robot arm by direct bilateral coupling under 7-s time delay condition.
#@Takashi Imaida,Yasuyoshi Yokokohji,Toshitsugu Doi,Mitsushige Oda,Tsuneo Yoshikawa
#t2004
#cIEEE Transactions on Robotics
#index2877582
#% 
#!
  
#*Adaptive/Robust Control for Time-Delay Teleoperation.
#@Ali Shahdi,Shahin Sirouspour
#t2009
#cIEEE Transactions on Robotics
#index2877877
#% 
#!
  
#*Design and Control of Concentric-Tube Robots.
#@Pierre E. Dupont,Jesse Lock,Brandon Itkowitz,Evan Butler
#t2010
#cIEEE Transactions on Robotics
#index2877977
#%497637
#%1306766
#!
  
#*A Synchronization Approach to Trajectory Tracking of Multiple Mobile Robots While Maintaining Time-Varying Formations.
#@Dong Sun,Can Wang,Wen Shang,Gang Feng
#t2009
#cIEEE Transactions on Robotics
#index2877865
#%757719
#%757878
#%1274153
#%2877926
#!
  
#*Passive bilateral feedforward control of linear dynamically similar teleoperated manipulators.
#@Dongjun Lee,Perry Y. Li
#t2003
#cIEEE Transactions on Robotics
#index2877784
#% 
#!
  
#*Path-following control of mobile robots in presence of uncertainties.
#@Paulo Coelho,Urbano Nunes
#t2005
#cIEEE Transactions on Robotics
#index2877680
#% 
#!
  
#*The dynamic capability equations: a new tool for analyzing robotic manipulator performance.
#@Alan Bowling,Oussama Khatib
#t2005
#cIEEE Transactions on Robotics
#index2877629
#% 
#!
  
#*A real-time expectation-maximization algorithm for acquiring multiplanar maps of indoor environments with mobile robots.
#@Sebastian Thrun,Christian Martin,Yufeng Liu,Dirk Hähnel,Rosemary Emery-Montemerlo,Deepayan Chakrabarti,Wolfram Burgard
#t2004
#cIEEE Transactions on Robotics
#index2877567
#% 
#!
  
#*Dynamic Force Distribution in Multifingered Grasping by Decomposition and Positive Combination.
#@Yu Zheng,Wen-Han Qian
#t2005
#cIEEE Transactions on Robotics
#index2877698
#% 
#!
  
#*Uncalibrated Euclidean 3-D reconstruction using an active vision system.
#@Youfu Li,R. S. Lu
#t2004
#cIEEE Transactions on Robotics
#index2877455
#% 
#!
  
#*Grasp analysis and synthesis based on a new quantitative measure.
#@Xiangyang Zhu,Han Ding,Jun Wang
#t2003
#cIEEE Transactions on Robotics
#index2877771
#% 
#!
  
#*Analytical kinematics models and special geometries of a class of 4-DOF parallel mechanisms.
#@Matteo Zoppi,Dimiter Zlatanov,Clément M. Gosselin
#t2005
#cIEEE Transactions on Robotics
#index2877707
#% 
#!
  
#*Exact solution and infinite-dimensional stability analysis of a single flexible link in collision.
#@Francis Ching,David Wang
#t2003
#cIEEE Transactions on Robotics
#index2877745
#% 
#!
  
#*A general method for C-space evaluation and its application to articulated robots.
#@Belén Curto Diego,Vidal Moreno,Francisco Javier Blanco,Roberto Therón
#t2002
#cIEEE Transactions on Robotics
#index2877477
#% 
#!
  
#*An analytical expression for the generalized forces in multibody Lagrange equations.
#@Patrick Kool
#t2004
#cIEEE Transactions on Robotics
#index2877594
#% 
#!
  
#*Estimation of the Flexural States of a Macro-Micro Manipulator Using Point-Acceleration Data.
#@Kourosh Parsa,Jorge Angeles,Arun K. Misra
#t2005
#cIEEE Transactions on Robotics
#index2877603
#% 
#!
  
#*An SVD-based projection method for interpolation on SE(3).
#@Calin Belta,Vijay R. Kumar
#t2002
#cIEEE Transactions on Robotics
#index2877462
#% 
#!
  
#*Navigation of decentralized autonomous automatic guided vehicles in material handling.
#@Sigal Berman,Yael Edan,Mo Jamshidi
#t2003
#cIEEE Transactions on Robotics
#index2877772
#% 
#!
  
#*Online Segmentation and Clustering From Continuous Observation of Whole Body Motions.
#@Dana Kulic,Wataru Takano,Yoshihiko Nakamura
#t2009
#cIEEE Transactions on Robotics
#index2877942
#%757708
#%832677
#%1274262
#!
  
#*Sliding-Mode Velocity Control of Mobile-Wheeled Inverted-Pendulum Systems.
#@J. Huang,Z. Guan,T. Matsuno,T. Fukuda,K. Sekiyama
#t2010
#cIEEE Transactions on Robotics
#index2877976
#%1152515
#%1195092
#%1307094
#!
  
#*Sensor-based exploration for convex bodies: a new roadmap for a convex-shaped robot.
#@Ji Yeong Lee,Howie Choset
#t2005
#cIEEE Transactions on Robotics
#index2877660
#% 
#!
  
#*On finding energy-minimizing paths on terrains.
#@Zheng Sun,John H. Reif
#t2005
#cIEEE Transactions on Robotics
#index2877689
#% 
#!
  
#*Singularity Analysis of Lower Mobility Parallel Manipulators Using Grassmann-Cayley Algebra.
#@Daniel Kanaan,Philippe Wenger,Stéphane Caro,Damien Chablat
#t2009
#cIEEE Transactions on Robotics
#index2877901
#%1274365
#!
  
#*Description of Instantaneous Restriction Space for Multi-DOFs Bilateral Teleoperation Systems Using Position Sensors in Unstructured Environments.
#@Keehoon Kim,Wan Kyun Chung,Murat Cenk Çavusoglu
#t2009
#cIEEE Transactions on Robotics
#index2877887
#%3004698
#!
  
#*Grasping-force optimization for multifingered robotic hands using a recurrent neural network.
#@Youshen Xia,Jun Wang,Lo Ming Fok
#t2004
#cIEEE Transactions on Robotics
#index2877569
#% 
#!
  
#*Task Selection for Control of Active-Vision Systems.
#@Yasushi Iwatani
#t2010
#cIEEE Transactions on Robotics
#index2877970
#% 
#!
  
#*Modeling and controllability for a class of hybrid mechanical systems.
#@Francesco Bullo,Milos Zefran
#t2002
#cIEEE Transactions on Robotics
#index2877531
#% 
#!
  
#*A Modularized Personal Robot DRP I: Design and Implementation.
#@Se-gon Roh,KwangWoong Yang,Jae Hoon Park,Hyungpil Moon,Hong-Seok Kim,Hogil Lee,Hyouk Ryeol Choi
#t2009
#cIEEE Transactions on Robotics
#index2877913
#%757729
#%875146
#%1125870
#!
  
#*A Simulation/Experimental Study of the Noisy Behavior of the Time-Domain Passivity Controller.
#@Jee-Hwan Ryu,Blake Hannaford,Dong-Soo Kwon,Jong-Hwan Kim
#t2005
#cIEEE Transactions on Robotics
#index2877518
#% 
#!
  
#*A unified approach for inverse and direct dynamics of constrained multibody systems based on linear projection operator: applications to control and simulation.
#@Farhad Aghili
#t2005
#cIEEE Transactions on Robotics
#index2877649
#% 
#!
  
#*Inverse Jacobian Regulator With Gravity Compensation: Stability and Experiment.
#@Chien-Chern Cheah,Hwee Choo Liaw
#t2005
#cIEEE Transactions on Robotics
#index2877639
#% 
#!
  
#*Vector Fields for Robot Navigation Along Time-Varying Curves in n -Dimensions.
#@Vinicius Mariano Gonçalves,Luciano C. A. Pimenta,Carlos Andrey Maia,Bruno C. O. Dutra,Guilherme A. S. Pereira
#t2010
#cIEEE Transactions on Robotics
#index2877998
#%1119605
#%1181243
#%1274343
#%1306855
#%1306944
#!
  
#*Nonholonomic navigation and control of cooperating mobile manipulators.
#@Herbert G. Tanner,Savvas G. Loizou,Kostas J. Kyriakopoulos
#t2003
#cIEEE Transactions on Robotics
#index2877778
#% 
#!
  
#*A Hybrid Motion Classification Approach for EMG-Based Human-Robot Interfaces Using Bayesian and Neural Networks.
#@Nan Bu,Masaru Okamoto,Toshio Tsuji
#t2009
#cIEEE Transactions on Robotics
#index2877856
#%3498
#%898003
#%982163
#%1032102
#%1136071
#%1136272
#!
  
#*Improvements on Visual Servoing From Spherical Targets Using a Spherical Projection Model.
#@Romeo Tatsambon Fomena,François Chaumette
#t2009
#cIEEE Transactions on Robotics
#index2877910
#% 
#!
  
#*Parametric models for motion planning and control in biomimetic robotics.
#@Goran S. Dordevic,Milan Rasic,Reza Shadmehr
#t2005
#cIEEE Transactions on Robotics
#index2877716
#% 
#!
  
#*Cable suspended planar robots with redundant cables: controllers with positive tensions.
#@So-Ryeok Oh,Sunil Kumar Agrawal
#t2005
#cIEEE Transactions on Robotics
#index2877482
#% 
#!
  
#*Robust adaptive control of nonholonomic mobile robot with parameter and nonparameter uncertainties.
#@Wenjie Dong,Klaus-Dieter Kuhnert
#t2005
#cIEEE Transactions on Robotics
#index2877678
#% 
#!
  
#*Estimation of Fingertip Force Direction With Computer Vision.
#@Yu Sun,John M. Hollerbach,Stephen A. Mascaro
#t2009
#cIEEE Transactions on Robotics
#index2877821
#% 
#!
  
#*Power Consumption Modeling of Skid-Steer Tracked Mobile Robots on Rigid Terrain.
#@Jesús Morales,Jorge L. Martínez,Anthony Mandow,Alfonso García-Cerezo,Salvador Pedraza
#t2009
#cIEEE Transactions on Robotics
#index2877855
#%133057
#%920300
#%1195912
#!
  
#*Transparency in time-delayed systems and the effect of local force feedback for transparent teleoperation.
#@Keyvan Hashtrudi-Zaad,Septimiu E. Salcudean
#t2002
#cIEEE Transactions on Robotics
#index2877488
#% 
#!
  
#*EMG-Based Control of a Robot Arm Using Low-Dimensional Embeddings.
#@Panagiotis K. Artemiadis,Kostas J. Kyriakopoulos
#t2010
#cIEEE Transactions on Robotics
#index2877959
#% 
#!
  
#*Design Strategy of Serial Manipulators With Certified Constraint Satisfaction.
#@Denny Oetomo,David Daney,Jean-Pierre Merlet
#t2009
#cIEEE Transactions on Robotics
#index2877907
#%327643
#%1050458
#%1121468
#!
  
#*Vision-Aided Inertial Navigation for Spacecraft Entry, Descent, and Landing.
#@Anastasios I. Mourikis,Nikolas Trawny,Stergios I. Roumeliotis,Andrew Edie Johnson,Adnan Ansar,Larry Matthies
#t2009
#cIEEE Transactions on Robotics
#index2877841
#%650928
#%907577
#%908109
#%907739
#%908352
#%920506
#%1031062
#%1195722
#!
  
#*Optimal mobile robot pose estimation using geometrical maps.
#@Geovany Araujo Borges,Marie-José Aldon
#t2002
#cIEEE Transactions on Robotics
#index2877483
#% 
#!
  
#*A unified geometric approach to modeling and control of constrained mechanical systems.
#@Guanfeng Liu,Zexiang Li
#t2002
#cIEEE Transactions on Robotics
#index2877497
#% 
#!
  
#*Visual servoing invariant to changes in camera-intrinsic parameters.
#@Ezio Malis
#t2004
#cIEEE Transactions on Robotics
#index2877584
#% 
#!
  
#*Adaptive dynamic collision checking for single and multiple articulated robots in complex environments.
#@Fabian Schwarzer,Mitul Saha,Jean-Claude Latombe
#t2005
#cIEEE Transactions on Robotics
#index2877643
#% 
#!
  
#*Compliant Control of Multicontact and Center-of-Mass Behaviors in Humanoid Robots.
#@Luis Sentis,Jaeheung Park,Oussama Khatib
#t2010
#cIEEE Transactions on Robotics
#index2878018
#%920309
#!
  
#*Distributed-Actuation Mechanism for a Finger-Type Manipulator: Theory and Experiments.
#@Young June Shin,Kyung-Soo Kim
#t2010
#cIEEE Transactions on Robotics
#index2878012
#%1050483
#!
  
#*Multiple manipulator control from a human motor-control perspective.
#@Chandrasekhar Kambhampati,S. Rajasekharan
#t2003
#cIEEE Transactions on Robotics
#index2877740
#% 
#!
  
#*An integrated path-planning and control approach for nonholonomic unicycles using switched local potentials.
#@Kaustubh Pathak,Sunil Kumar Agrawal
#t2005
#cIEEE Transactions on Robotics
#index2877460
#% 
#!
  
#*Vision-based localization algorithm based on landmark matching, triangulation, reconstruction, and comparison.
#@David C. K. Yuen,Bruce A. MacDonald
#t2005
#cIEEE Transactions on Robotics
#index2877536
#% 
#!
  
#*A humanoid shoulder complex and the humeral pointing kinematics.
#@Jadran Lenarcic,Michael Stanisic
#t2003
#cIEEE Transactions on Robotics
#index2877818
#% 
#!
  
#*Coordinated target assignment and intercept for unmanned air vehicles.
#@Randal W. Beard,Timothy W. McLain,Michael A. Goodrich,Erik P. Anderson
#t2002
#cIEEE Transactions on Robotics
#index2877424
#% 
#!
  
#*An assembly-oriented product family representation for integrated design.
#@Pierre De Lit,Joëlle Danloy,Alain Delchambre,Jean-Michel Henrioud
#t2003
#cIEEE Transactions on Robotics
#index2877735
#% 
#!
  
#*Reactive Path Planning in a Dynamic Environment.
#@Fethi Belkhouche
#t2009
#cIEEE Transactions on Robotics
#index2877952
#%757776
#%1195767
#%1274162
#%3348896
#!
  
#*Automatic gait-pattern adaptation algorithms for rehabilitation with a 4-DOF robotic orthosis.
#@Sago Jezernik,Gery Colombo,Manfred Morari
#t2004
#cIEEE Transactions on Robotics
#index2877564
#% 
#!
  
#*Automatic recalibration of an active structured light vision system.
#@Y. F. Li,S. Y. Chen
#t2003
#cIEEE Transactions on Robotics
#index2877785
#% 
#!
  
#*Approximate Jacobian control for robots with uncertain kinematics and dynamics.
#@Chien-Chern Cheah,Masanori Hirano,Sadao Kawamura,Suguru Arimoto
#t2003
#cIEEE Transactions on Robotics
#index2877798
#% 
#!
  
#*Robot-assisted femoral stem implantation using an intramedulla gauge.
#@Jong-Ha Chung,Seong-Young Ko,Dong-Soo Kwon,Jung-Ju Lee,Yong-San Yoon,Choong-Hee Won
#t2003
#cIEEE Transactions on Robotics
#index2877760
#% 
#!
  
#*Boundary Condition Relaxation Method for Stepwise Pedipulation Planning of Biped Robots.
#@Tomomichi Sugihara,Yoshihiko Nakamura
#t2009
#cIEEE Transactions on Robotics
#index2877950
#%757835
#%1050540
#!
  
#*Emotion-based control of cooperating heterogeneous mobile robots.
#@Robin R. Murphy,Christine L. Lisetti,Russ Tardif,Liam Irish,Aaron Gage
#t2002
#cIEEE Transactions on Robotics
#index2877454
#% 
#!
  
#*Stable walking of a 7-DOF biped robot.
#@Franck Plestan,Jessy W. Grizzle,Eric R. Westervelt,Gabriel Abba
#t2003
#cIEEE Transactions on Robotics
#index2877743
#% 
#!
  
#*Formal verification for analysis and design of logic controllers for reconfigurable machining systems.
#@Dhrubajyoti Kalita,Pramod P. Khargonekar
#t2002
#cIEEE Transactions on Robotics
#index2877433
#% 
#!
  
#*Liveness-enforcing supervision for resource allocation systems with uncontrollable behavior and forbidden states.
#@Jonghun Park,Spyros A. Reveliotis
#t2002
#cIEEE Transactions on Robotics
#index2877489
#% 
#!
  
#*Road-boundary detection and tracking using ladar sensing.
#@Wijerupage Sardha Wijesoma,K. R. Sarath Kodagoda,Arjuna P. Balasuriya
#t2004
#cIEEE Transactions on Robotics
#index2877538
#% 
#!
  
#*Robustness of Image-Based Visual Servoing With a Calibrated Camera in the Presence of Uncertainties in the Three-Dimensional Structure.
#@Ezio Malis,Youcef Mezouar,Patrick Rives
#t2010
#cIEEE Transactions on Robotics
#index2877997
#%168147
#%434787
#%434619
#%908385
#%908600
#%1274187
#!
  
#*Vibration control of Gough-Stewart platform on flexible suspension.
#@Yuan Cheng,Gexue Ren,Shiliang Dai
#t2003
#cIEEE Transactions on Robotics
#index2877755
#% 
#!
  
#*Structure synthesis of a class of 3-DOF rotational parallel manipulators.
#@Yuefa Fang,Lung-Wen Tsai
#t2004
#cIEEE Transactions on Robotics
#index2877574
#% 
#!
  
#*Discrete abstractions for robot motion planning and control in polygonal environments.
#@Calin Belta,Volkan Isler,George J. Pappas
#t2005
#cIEEE Transactions on Robotics
#index2877638
#% 
#!
  
#*Analysis and Experimental Verification for Dynamic Modeling of A Skid-Steered Wheeled Vehicle.
#@Wei Yu,Oscar Y. Chuy,Emmaneul G. Collins,Patrick Hollis
#t2010
#cIEEE Transactions on Robotics
#index2878008
#%920300
#%1274211
#%1306870
#%1307015
#%1312793
#!
  
#*Actively Controlled Manipulation of a Magnetic Microbead Using Quadrupole Magnetic Tweezers.
#@Zhipeng Zhang,Yanan Huang,Chia-Hsiang Menq
#t2010
#cIEEE Transactions on Robotics
#index2877961
#%2877955
#!
  
#*Research on estimating smoothed value and differential value by using sliding mode system.
#@Takanori Emaru,Takeshi Tsuchiya
#t2003
#cIEEE Transactions on Robotics
#index2877750
#% 
#!
  
#*Automatic Camera-Based Microscope Calibration for a Telemicromanipulation System Using a Virtual Pattern.
#@Mehdi Ammi,Vincent Frémont,Antoine Ferreira
#t2009
#cIEEE Transactions on Robotics
#index2877829
#%129259
#%771673
#%947634
#!
  
#*Stochastic Modular Robotic Systems: A Study of Fluidic Assembly Strategies.
#@Michael Thomas Tolley,Michael Kalontarov,Jonas Neubert,David Erickson,Hod Lipson
#t2010
#cIEEE Transactions on Robotics
#index2878017
#%806546
#%1274242
#%1274288
#!
  
#*Tactile Sensing - From Humans to Humanoids.
#@R. S. Dahiya,Giorgio Metta,M. Valle,Giulio Sandini
#t2010
#cIEEE Transactions on Robotics
#index2877988
#%238552
#%238533
#%920034
#%1050420
#%3002020
#!
  
#*A fingerprint pointing device utilizing the deformation of the fingertip during the incipient slip.
#@Yuichi Kurita,Atsutoshi Ikeda,Jun Ueda,Tsukasa Ogasawara
#t2005
#cIEEE Transactions on Robotics
#index2877706
#% 
#!
  
#*Experimental Comparison Study of Control Architectures for Bilateral Teleoperators.
#@Erick J. Rodriguez-Seda,Dongjun Lee,Mark W. Spong
#t2009
#cIEEE Transactions on Robotics
#index2877941
#% 
#!
  
#*Task-space tracking control of robot manipulators via quaternion feedback.
#@Bin Xian,Marcio S. de Queiroz,Darren M. Dawson,Ian D. Walker
#t2004
#cIEEE Transactions on Robotics
#index2877575
#% 
#!
  
#*A New Mechanism for Mesoscale Legged Locomotion in Compliant Tubular Environments.
#@Pietro Valdastri,Robert J. Webster,Claudio Quaglia,Marco Quirini,Arianna Menciassi,Paolo Dario
#t2009
#cIEEE Transactions on Robotics
#index2877923
#%920504
#!
  
#*Control of Nonholonomic Mobile Robots Based on the Transverse Function Approach.
#@Pascal Morin,Claude Samson
#t2009
#cIEEE Transactions on Robotics
#index2877897
#%920053
#%2890015
#!
  
#*Kinematic controllability and motion planning for the snakeboard.
#@Francesco Bullo,Andrew D. Lewis
#t2003
#cIEEE Transactions on Robotics
#index2877790
#% 
#!
  
#*Inverse kinematics of multilink flexible robots for high-speed applications.
#@Joono Cheong,Wan Kyun Chung,Youngil Youm
#t2004
#cIEEE Transactions on Robotics
#index2877592
#% 
#!
  
#*Vibration-Induced Frequency-Controllable Bidirectional Locomotion for Assembly and Microrobotic Applications.
#@Zhenwen Ding,Babak Ziaie
#t2009
#cIEEE Transactions on Robotics
#index2877864
#% 
#!
  
#*Motion planning for kinematic stratified systems with application to quasi-static legged locomotion and finger gaiting.
#@Bill Goodwine,Joel W. Burdick
#t2002
#cIEEE Transactions on Robotics
#index2877487
#% 
#!
  
#*Simultaneously Estimating the Fundamental Matrix and Homographies.
#@Pei Chen,David Suter
#t2009
#cIEEE Transactions on Robotics
#index2877866
#% 
#!
  
#*Visual motion planning for mobile robots.
#@Hong Zhang,James P. Ostrowski
#t2002
#cIEEE Transactions on Robotics
#index2877468
#% 
#!
  
#*Profile sensing with an actuated whisker.
#@Gregory R. Scholz,Christopher D. Rahn
#t2004
#cIEEE Transactions on Robotics
#index2877557
#% 
#!
  
#*Optimization of cyclic production systems: a heuristic approach.
#@Fabrice Chauvet,Jeffrey W. Herrmann,Jean-Marie Proth
#t2003
#cIEEE Transactions on Robotics
#index2877810
#% 
#!
  
#*Reducing Base Reactions With Gyroscopic Actuation of Space-Robotic Systems.
#@Michele D. Carpenter,Mason A. Peck
#t2009
#cIEEE Transactions on Robotics
#index2877914
#% 
#!
  
#*Application of a multi-DOF ultrasonic servomotor in an auditory tele-existence robot.
#@Hiroshi Kawano,Hideyuki Ando,Tatsuya Hirahara,Cheolho Yun,Sadayuki Ueha
#t2005
#cIEEE Transactions on Robotics
#index2877524
#% 
#!
  
#*Control of an object with parallel surfaces by a pair of finger robots without object sensing.
#@Ryuta Ozawa,Suguru Arimoto,Shinsuke Nakamura,Ji-Hun Bae
#t2005
#cIEEE Transactions on Robotics
#index2877687
#% 
#!
  
#*Multiview camera-calibration framework for nonparametric distortions removal.
#@Christophe Y. Vincent,Tardi Tjahjadi
#t2005
#cIEEE Transactions on Robotics
#index2877628
#% 
#!
  
#*Adaptive tracking control of underwater vehicle-manipulator systems based on the virtual decomposition approach.
#@Gianluca Antonelli,Fabrizio Caccavale,Stefano Chiaverini
#t2004
#cIEEE Transactions on Robotics
#index2877602
#% 
#!
  
#*Omni-directional robot and adaptive control method for off-road running.
#@Peng Chen,Shinichiro Mitsutake,Takashi Isoda,Tielin Shi
#t2002
#cIEEE Transactions on Robotics
#index2877494
#% 
#!
  
#*Computation of Independent Contact Regions for Grasping 3-D Objects.
#@Máximo A. Roa,Raúl Suárez
#t2009
#cIEEE Transactions on Robotics
#index2877905
#% 
#!
  
#*Singularities of parallel manipulators: a geometric treatment.
#@Guanfeng Liu,Yunjiang Lou,Zexiang Li
#t2003
#cIEEE Transactions on Robotics
#index2877732
#% 
#!
  
#*Interrobot Transformations in 3-D.
#@Nikolas Trawny,Xun S. Zhou,Ke X. Zhou,Stergios I. Roumeliotis
#t2010
#cIEEE Transactions on Robotics
#index2877971
#%506468
#%757964
#%757890
#%757833
#%757860
#%920155
#%1031062
#%1032767
#%1033473
#%1114154
#%1121724
#%1124443
#%1227715
#!
  
#*Stem cell harvesting device with passive flexible drilling unit for bone marrow transplantation.
#@Kota Ohashi,Nobuhiko Hata,Tomoko Matsumura,Toru Ogata,Naoki Yahagi,Ichiro Sakuma,Takeyoshi Dohi
#t2003
#cIEEE Transactions on Robotics
#index2877800
#% 
#!
  
#*Construction Methodology for a Remote Ultrasound Diagnostic System.
#@Norihiro Koizumi,Shin'ichi Warisawa,Mitsuru Nagoshi,Hiroyuki Hashizume,Mamoru Mitsuishi
#t2009
#cIEEE Transactions on Robotics
#index2877854
#% 
#!
  
#*Using PCA in time-of-flight vectors for reflector recognition and 3-D localization.
#@José Antonio Jiménez,Manuel Mazo,Jesús Ureña,Álvaro Hernández,Fernando J. Álvarez,Juan Jesús García,Enrique Santiso
#t2005
#cIEEE Transactions on Robotics
#index2877621
#% 
#!
  
#*Impedance control for elastic joints industrial manipulators.
#@Gianni Ferretti,GianAntonio Magnani,Paolo Rocco
#t2004
#cIEEE Transactions on Robotics
#index2877576
#% 
#!
  
#*Loop shaping for transparency and stability robustness in bilateral telemanipulation.
#@Kevin Fite,Liang Shao,Michael Goldfarb
#t2004
#cIEEE Transactions on Robotics
#index2877577
#% 
#!
  
#*Defining Conditions for Nonsingular Transitions Between Assembly Modes.
#@Alfonso Hernández,Oscar Altuzarra,Víctor Petuya,Erik Macho
#t2009
#cIEEE Transactions on Robotics
#index2877900
#% 
#!
  
#*Forward model for sonar maps produced with the Polaroid ranging module.
#@Roman Kuc
#t2003
#cIEEE Transactions on Robotics
#index2877780
#% 
#!
  
#*State space modeling of dimensional variation propagation in multistage machining process using differential motion vectors.
#@Shiyu Zhou,Qiang Huang,Jianjun Shi
#t2003
#cIEEE Transactions on Robotics
#index2877763
#% 
#!
  
#*A simple and analytical procedure for calibrating extrinsic camera parameters.
#@Fei-Yue Wang
#t2004
#cIEEE Transactions on Robotics
#index2877565
#% 
#!
  
#*Localization of Curved Parts Through Continual Touch.
#@Yan-Bin Jia
#t2005
#cIEEE Transactions on Robotics
#index2877640
#% 
#!
  
#*Deterministic Robot-Network Localization is Hard.
#@Yoann Dieudonné,Ouiddad Labbani-Igbida,Franck Petit
#t2010
#cIEEE Transactions on Robotics
#index2877979
#%155431
#%506357
#%506337
#%757939
#%757860
#%803577
#%1114154
#!
  
#*A Banker's solution for deadlock avoidance in FMS with flexible routing and multiresource states.
#@Joaquin Ezpeleta,Fernando Tricas,Fernando García-Vallés,José Manuel Colom
#t2002
#cIEEE Transactions on Robotics
#index2877528
#% 
#!
  
#*Null-Space Grasp Control: Theory and Experiments.
#@Robert Platt Jr.,Andrew H. Fagg,Roderic A. Grupen
#t2010
#cIEEE Transactions on Robotics
#index2877986
#%249037
#%622514
#%920398
#!
  
#*Effects of position quantization and sampling rate on virtual-wall passivity.
#@Jake J. Abbott,Allison M. Okamura
#t2005
#cIEEE Transactions on Robotics
#index2877688
#% 
#!
  
#*A branch-and-prune solver for distance constraints.
#@Josep M. Porta,Lluís Ros,Federico Thomas,Carme Torras
#t2005
#cIEEE Transactions on Robotics
#index2877686
#% 
#!
  
#*Kinematics Modeling and Analyses of Articulated Rovers.
#@Mahmoud Tarokh,Gregory J. McDermott
#t2005
#cIEEE Transactions on Robotics
#index2877648
#% 
#!
  
#*Geometric visual servoing.
#@Noah J. Cowan,Dong Eui Chang
#t2005
#cIEEE Transactions on Robotics
#index2877668
#% 
#!
  
#*Iterative learning control for robot manipulators using the finite dimensional input subspace.
#@Kenichi Hamamoto,Toshiharu Sugie
#t2002
#cIEEE Transactions on Robotics
#index2877507
#% 
#!
  
#*Using manipulability to bias sampling during the construction of probabilistic roadmaps.
#@Peter Leven,Seth Hutchinson
#t2003
#cIEEE Transactions on Robotics
#index2877725
#% 
#!
  
#*Performance Evaluation for Multi-arm Manipulation of Hollow Suspended Organs.
#@Wei Wei,Roger E. Goldman,Howard F. Fine,Stanley Chang,Nabil Simaan
#t2009
#cIEEE Transactions on Robotics
#index2877902
#%130755
#%920350
#%3004698
#!
  
#*Development of a cybernetic shoulder-a 3-DOF mechanism that imitates biological shoulder motion.
#@Masafumi Okada,Yoshihiko Nakamura
#t2005
#cIEEE Transactions on Robotics
#index2877661
#% 
#!
  
#*Controllers for unicycle-type wheeled robots: Theoretical results and experimental validation.
#@ByungMoon Kim,Panagiotis Tsiotras
#t2002
#cIEEE Transactions on Robotics
#index2877469
#% 
#!
  
#*Dynamic Performance of a SCARA Robot Manipulator With Uncertainty Using Polynomial Chaos Theory.
#@Philip A. Voglewede,Anton H. C. Smith,Antonello Monti
#t2009
#cIEEE Transactions on Robotics
#index2877932
#% 
#!
  
#*3-D Source Seeking for Underactuated Vehicles Without Position Measurement.
#@Jennie Cochran,Antranik Antonio Siranosian,Nima Ghods,Miroslav Krstic
#t2009
#cIEEE Transactions on Robotics
#index2877895
#%1181684
#!
  
#*Redundant robotic chains on Riemannian submersions.
#@Claudio Altafini
#t2004
#cIEEE Transactions on Robotics
#index2877562
#% 
#!
  
#*Interpersonal Synchronization of Body Motion and the Walk-Mate Walking Support Robot.
#@Yoshihiro Miyake
#t2009
#cIEEE Transactions on Robotics
#index2877836
#% 
#!
  
#*Impairment-Based 3-D Robotic Intervention Improves Upper Extremity Work Area in Chronic Stroke: Targeting Abnormal Joint Torque Coupling With Progressive Shoulder Abduction Loading.
#@Michael D. Ellis,Theresa M. Sukal-Moulton,Julius Dewald
#t2009
#cIEEE Transactions on Robotics
#index2877857
#% 
#!
  
#*Development of a Flying Robot With a Pantograph-Based Variable Wing Mechanism.
#@Naohiro Hara,Kazuo Tanaka,Hiroshi Ohtake,Hua O. Wang
#t2009
#cIEEE Transactions on Robotics
#index2877846
#% 
#!
  
#*A Foldable 3-DOF Parallel Mechanism With Application to a Flat-Panel TV Mounting Device.
#@Jae Heon Chung,Byung-Ju Yi,Sung Oh
#t2009
#cIEEE Transactions on Robotics
#index2877940
#%920605
#!
  
#*Simultaneous translational and rotational tracking in dynamic environments: theoretical and practical viewpoints.
#@Youngmo Han
#t2004
#cIEEE Transactions on Robotics
#index2877441
#% 
#!
  
#*Autonomous Robotic Pick-and-Place of Microobjects.
#@Y. Zhang,B. K. Chen,X. Liu,Y. Sun
#t2010
#cIEEE Transactions on Robotics
#index2877960
#%1152223
#%1152670
#%1274223
#!
  
#*Vision-Based Localization for Leader-Follower Formation Control.
#@Gian Luca Mariottini,Fabio Morbidi,Domenico Prattichizzo,Nicholas Vander Valk,Nathan Michael,George J. Pappas,Kostas Daniilidis
#t2009
#cIEEE Transactions on Robotics
#index2877885
#% 
#!
  
#*A Probabilistic Particle-Control Approximation of Chance-Constrained Stochastic Predictive Control.
#@Lars Blackmore,Masahiro Ono,Askar Bektassov,Brian C. Williams
#t2010
#cIEEE Transactions on Robotics
#index2877989
#%258074
#%632663
#%811996
#%1014525
#%1180810
#!
  
#*Planar Bipedal Jumping Gaits With Stable Landing.
#@Dip Goswami,Prahlad Vadakkepat
#t2009
#cIEEE Transactions on Robotics
#index2877874
#%919951
#%1119747
#%1152664
#%1195162
#%1195092
#!
  
#*Path Planning for Improved Visibility Using a Probabilistic Road Map.
#@Matthew A. Baumann,Simon Léonard,Elizabeth A. Croft,James J. Little
#t2010
#cIEEE Transactions on Robotics
#index2878026
#%593332
#%1033149
#%3003450
#!
  
#*Performance Analysis of Sawing Based on Impulse Measure and Geometry - Dublahal Arm Approach.
#@Jae Hoon Lee,Byung-Ju Yi,Sang-Rok Oh,Il Hong Suh
#t2005
#cIEEE Transactions on Robotics
#index2877525
#% 
#!
  
#*Motion planning for multitarget surveillance with mobile sensor agents.
#@Zhijun Tang,Ümit Özgüner
#t2005
#cIEEE Transactions on Robotics
#index2877679
#% 
#!
  
#*An agent-based approach to reconfiguration of real-time distributed control systems.
#@Robert William Brennan,Martyn Fletcher,Douglas H. Norrie
#t2002
#cIEEE Transactions on Robotics
#index2877476
#% 
#!
  
#*Initial localization by set inversion.
#@Dominique Meizel,Olivier Lévêque,Luc Jaulin,Eric Walter
#t2002
#cIEEE Transactions on Robotics
#index2877439
#% 
#!
  
#*Simplification of the ray-shooting based algorithm for 3-D force-closure test.
#@Yu Zheng,Wen-Han Qian
#t2005
#cIEEE Transactions on Robotics
#index2877685
#% 
#!
  
#*Behavior-based robot navigation on challenging terrain: A fuzzy logic approach.
#@Homayoun Seraji,Ayanna M. Howard
#t2002
#cIEEE Transactions on Robotics
#index2877448
#% 
#!
  
#*Adaptive SP-D control of a robotic manipulator in the presence of modeling error in a gravity regressor matrix: theory and experiment.
#@Hakan Yazarel,Chien-Chern Cheah,Hwee Choo Liaw
#t2002
#cIEEE Transactions on Robotics
#index2877459
#% 
#!
  
#*Turning behavior modeling for the heading control of an articulated micro-tunneling robot.
#@Koichi Yoshida,Tadashi Haibara
#t2005
#cIEEE Transactions on Robotics
#index2877671
#% 
#!
  
#*A Geometric Algorithm to Compute Time-Optimal Trajectories for a Bidirectional Steered Robot.
#@Huifang Wang,Yangzhou Chen,Philippe Souères
#t2009
#cIEEE Transactions on Robotics
#index2877915
#%1274146
#%1274211
#%3002009
#!
  
#*Decentralized Localization of Sparsely-Communicating Robot Networks: A Centralized-Equivalent Approach.
#@Keith Yu Kit Leung,Tim D. Barfoot,Hugh H. T. Liu
#t2010
#cIEEE Transactions on Robotics
#index2878016
#%685727
#%757890
#%757939
#%757860
#%1274151
#%1306797
#%1307144
#%1320585
#!
  
#*Kinematic-Parameter Identification for Serial-Robot Calibration Based on POE Formula.
#@Ruibo He,Yingjun Zhao,Shunian Yang,Shuzi Yang
#t2010
#cIEEE Transactions on Robotics
#index2878009
#%920143
#!
  
#*Multirobot Rendezvous With Visibility Sensors in Nonconvex Environments.
#@Anurag Ganguli,Jorge Cortés,Francesco Bullo
#t2009
#cIEEE Transactions on Robotics
#index2877839
#%79005
#%593275
#%757773
#%757941
#%1045414
#%1060514
#%1080657
#%1091118
#%1119075
#%3002009
#!
  
#*Consensus-Based Decentralized Auctions for Robust Task Allocation.
#@Han-Lim Choi,Luc Brunet,Jonathan P. How
#t2009
#cIEEE Transactions on Robotics
#index2877953
#% 
#!
  
#*Architectural models for global automation systems.
#@Davide Brugali,Giuseppe Menga
#t2002
#cIEEE Transactions on Robotics
#index2877514
#% 
#!
  
#*Fault identification for robot manipulators.
#@Michael L. McIntyre,Warren E. Dixon,Darren M. Dawson,Ian D. Walker
#t2005
#cIEEE Transactions on Robotics
#index2877676
#% 
#!
  
#*A Nonlinear Set Membership Approach for the Localization and Map Building of Underwater Robots.
#@Luc Jaulin
#t2009
#cIEEE Transactions on Robotics
#index2877951
#%757894
#%920537
#%1090451
#!
  
#*A vision-based formation control framework.
#@Aveek K. Das,Rafael Fierro,R. Vijay Kumar,James P. Ostrowski,John R. Spletzer,Camillo J. Taylor
#t2002
#cIEEE Transactions on Robotics
#index2877496
#% 
#!
  
#*Bioinspired Visuomotor Convergence.
#@James Sean Humbert,Andrew Maxwell Hyslop
#t2010
#cIEEE Transactions on Robotics
#index2878015
#%389579
#%758143
#%908370
#%1022919
#%3002486
#!
  
#*Swedish Wheeled Omnidirectional Mobile Robots: Kinematics Analysis and Control.
#@Giovanni Indiveri
#t2009
#cIEEE Transactions on Robotics
#index2877933
#%1050567
#%1195884
#%1195888
#!
  
#*Dynamic model with slip for wheeled omnidirectional robots.
#@Robert L. Williams II,Brian E. Carter,Paolo Gallina,Giulio Rosati
#t2002
#cIEEE Transactions on Robotics
#index2877446
#% 
#!
  
#*Sensory reflex control for humanoid walking.
#@Qiang Huang,Yoshihiko Nakamura
#t2005
#cIEEE Transactions on Robotics
#index2877682
#% 
#!
  
#*Stable teleoperation with time-domain passivity control.
#@Jee-Hwan Ryu,Dong-Soo Kwon,Blake Hannaford
#t2004
#cIEEE Transactions on Robotics
#index2877551
#% 
#!
  
#*Cooperative probabilistic state estimation for vision-based autonomous mobile robots.
#@Thorsten Schmitt,Robert Hanek,Michael Beetz,Sebastian Buck,Bernd Radig
#t2002
#cIEEE Transactions on Robotics
#index2877428
#% 
#!
  
#*Algorithms for Fast Concurrent Reconfiguration of Hexagonal Metamorphic Robots.
#@Jennifer E. Walter,Elizabeth M. Tsai,Nancy M. Amato
#t2005
#cIEEE Transactions on Robotics
#index2877662
#% 
#!
  
#*A high-speed VLSI design and ASIC implementation for constructing Euclidean distance-based discrete Voronoi diagram.
#@Natarajan Sudha,K. Sridharan
#t2004
#cIEEE Transactions on Robotics
#index2877599
#% 
#!
  
#*Magnetometer and differential carrier phase GPS-aided INS for advanced vehicle control.
#@Yunchun Yang,Jay A. Farrell
#t2003
#cIEEE Transactions on Robotics
#index2877803
#% 
#!
  
#*A new on-line algorithm for inverse kinematics of robot manipulators ensuring path tracking capability under joint limits.
#@Gianluca Antonelli,Stefano Chiaverini,Giuseppe Fusco
#t2003
#cIEEE Transactions on Robotics
#index2877730
#% 
#!
  
#*Dimensional design of hexaslides for optimal workspace and dexterity.
#@Abbaraju Bala Koteswara Rao,P. V. Madhusudhan Rao,Samir Kumar Saha
#t2005
#cIEEE Transactions on Robotics
#index2877633
#% 
#!
  
#*Singularities in three-legged platform-type parallel mechanisms.
#@John T. Wen,John F. O'Brien
#t2003
#cIEEE Transactions on Robotics
#index2877793
#% 
#!
  
#*Internal Preload Control of Redundantly Actuated Parallel Manipulators - Its Application to Backlash Avoiding Control.
#@Andreas Müller
#t2005
#cIEEE Transactions on Robotics
#index2877699
#% 
#!
  
#*Swarm aggregations using artificial potentials and sliding-mode control.
#@Veysel Gazi
#t2005
#cIEEE Transactions on Robotics
#index2877624
#% 
#!
  
#*Steering by Gazing: An Efficient Biomimetic Control Strategy for Visually Guided Micro Aerial Vehicles.
#@Lubin Kerhuel,Stéphane Viollet,Nicolas H. Franceschini
#t2010
#cIEEE Transactions on Robotics
#index2878006
#%516128
#%517374
#%758144
#%1027168
#%1195676
#%1332345
#%387516
#!
  
#*On the structure of minimum effort solutions with application to kinematic redundancy resolution.
#@Ian A. Gravagne,Ian D. Walker
#t2000
#cIEEE Transactions on Robotics
#index2983702
#% 
#!
  
#*Guest editorial.
#@MuDer Jeng,Xiaolan Xie
#t2001
#cIEEE Transactions on Robotics
#index2983596
#% 
#!
  
#*Spherical rolling robot: a design and motion planning studies.
#@S. Bhattacharya,S. K. Agrawal
#t2000
#cIEEE Transactions on Robotics
#index2983666
#% 
#!
  
#*Modeling and analysis of semiconductor manufacturing systems with degraded behavior using Petri nets and siphons.
#@MuDer Jeng,Xiaolan Xie
#t2001
#cIEEE Transactions on Robotics
#index2983571
#% 
#!
  
#*Extension of the Form-Closure Property to Underactuated Hands.
#@Sébastien Krut,Vincent Begoc,Etienne Dombre,François Pierrot
#t2010
#cIEEE Transactions on Robotics
#index2983772
#%757775
#%874477
#%920295
#%919956
#%920398
#%1274145
#%3168918
#!
  
#*Data association in stochastic mapping using the joint compatibility test.
#@José Neira,Juan D. Tardós
#t2001
#cIEEE Transactions on Robotics
#index2983610
#% 
#!
  
#*Programming and control of robots by means of differential algebraic inequalities.
#@Raymond J. Spiteri,Dinesh K. Pai,Uri M. Ascher
#t2000
#cIEEE Transactions on Robotics
#index2983746
#% 
#!
  
#*Hands for dexterous manipulation and robust grasping: a difficult road toward simplicity.
#@Antonio Bicchi
#t2000
#cIEEE Transactions on Robotics
#index2983673
#% 
#!
  
#*Visibility-based pursuit-evasion: the case of curved environments.
#@Steven M. LaValle,John Hinrichsen
#t2001
#cIEEE Transactions on Robotics
#index2983652
#% 
#!
  
#*Machine vision system for the automatic identification of robot kinematic parameters.
#@Patrick Rousseau,Alain Desrochers,Nicholas Krouglicof
#t2001
#cIEEE Transactions on Robotics
#index2983615
#% 
#!
  
#*Decentralized Navigation of Groups of Wheeled Mobile Robots With Limited Communication.
#@Andrey V. Savkin,Hamid Teimoori
#t2010
#cIEEE Transactions on Robotics
#index2983760
#%593852
#%1050517
#%1050484
#%1152398
#%1227242
#!
  
#*Singularity analysis of a class of composite serial in-parallel robots.
#@Nabil Simaan,Moshe Shoham
#t2001
#cIEEE Transactions on Robotics
#index2983582
#% 
#!
  
#*Algebraic synthesis of efficient deadlock avoidance policies for sequential resource allocation systems.
#@J. Park,S. P. Reveliotis
#t2000
#cIEEE Transactions on Robotics
#index2983688
#% 
#!
  
#*Global minimization of the robot base reaction force during 3-D maneuvers.
#@William R. Doggett,William C. Messner,Jer-Nan Juang
#t2000
#cIEEE Transactions on Robotics
#index2983707
#% 
#!
  
#*Task-Specific Generalization of Discrete and Periodic Dynamic Movement Primitives.
#@Ales Ude,Andrej Gams,Tamim Asfour,Jun Morimoto
#t2010
#cIEEE Transactions on Robotics
#index2983759
#%340671
#%835572
#%874515
#%1023035
#%1023502
#%1026854
#%1027454
#%1027935
#%1266711
#%1274137
#%1274262
#%1274196
#%1320581
#%2877942
#!
  
#*A feedback control scheme for reversing a truck and trailer vehicle.
#@Claudio Altafini,Alberto Speranzon,Bo Wahlberg
#t2001
#cIEEE Transactions on Robotics
#index2983645
#% 
#!
  
#*Control of contact via tactile sensing.
#@H. Zhang,N. N. Chen
#t2000
#cIEEE Transactions on Robotics
#index2983725
#% 
#!
  
#*Active Synthetic-Wheel Biped With Torso.
#@Louis L. Flynn,Rouhollah Jafari,Ranjan Mukherjee
#t2010
#cIEEE Transactions on Robotics
#index2983775
#%920309
#%2877946
#%2936431
#!
  
#*Low-order-complexity vision-based docking.
#@B. W. Minten,Robin R. Murphy,Jeff Hyams,Mark Micire
#t2001
#cIEEE Transactions on Robotics
#index2983584
#% 
#!
  
#*Manufacturing feature recognition from solid models: a status report.
#@JungHyun Han,M. Pratt,William C. Regli
#t2000
#cIEEE Transactions on Robotics
#index2983672
#% 
#!
  
#*Guest editorial.
#@P. Bannerjee,A. K. Kochhar
#t2000
#cIEEE Transactions on Robotics
#index2983709
#% 
#!
  
#*Analytic nonlinear H inverse-optimal control for Euler-Lagrange system.
#@Jonghoon Park,Wan Kyun Chung
#t2000
#cIEEE Transactions on Robotics
#index2983681
#% 
#!
  
#*Visual servoing by partitioning degrees of freedom.
#@Paul Y. Oh,Peter K. Allen
#t2001
#cIEEE Transactions on Robotics
#index2983630
#% 
#!
  
#*Multiprocessor task scheduling to minimize the maximum tardiness and the total completion time.
#@Xiaoqiang Cai,Chung-Yee Lee,Tin-Lam Wong
#t2000
#cIEEE Transactions on Robotics
#index2983745
#% 
#!
  
#*Vision-based navigation and environmental representations with an omnidirectional camera.
#@José António Gaspar,Niall Winters,José Santos-Victor
#t2000
#cIEEE Transactions on Robotics
#index2983737
#% 
#!
  
#*Geometric approach and taboo search for scheduling flexible manufacturing systems.
#@Yazid Mati,Nidhal Rezg,Xiaolan Xie
#t2001
#cIEEE Transactions on Robotics
#index2983654
#% 
#!
  
#*An effective method to reduce inventory in job shops.
#@Peter B. Luh,Xiaohui Zhou,Robert N. Tomastik
#t2000
#cIEEE Transactions on Robotics
#index2983690
#% 
#!
  
#*A curvature-based bound on the number of frictionless fingers required to immobilize three-dimensional objects.
#@Elon Rimon
#t2001
#cIEEE Transactions on Robotics
#index2983603
#% 
#!
  
#*Acquiring robust, force-based assembly skills from human demonstration.
#@Marjorie Skubic,Richard A. Volz
#t2000
#cIEEE Transactions on Robotics
#index2983716
#% 
#!
  
#*Cobot architecture.
#@Michael A. Peshkin,J. Edward Colgate,Wit Wannasuphoprasit,Carl A. Moore,R. Brent Gillespie,Prasad Akella
#t2001
#cIEEE Transactions on Robotics
#index2983635
#% 
#!
  
#*An optimal periodic scheduler for dual-arm robots in cluster tools with residency constraints.
#@Shadi Rostami,Babak Hamidzadeh,Daniel Camporese
#t2001
#cIEEE Transactions on Robotics
#index2983602
#% 
#!
  
#*The direct kinematics of parallel manipulators under joint-sensor redundancy.
#@Luc Baron,Jorge Angeles
#t2000
#cIEEE Transactions on Robotics
#index2983699
#% 
#!
  
#*Pseudo-amplitude scan sonar maps.
#@Roman Kuc
#t2001
#cIEEE Transactions on Robotics
#index2983640
#% 
#!
  
#*Design of intelligent data sampling methodology based on data mining.
#@Jang Hee Lee,Song Jin Yu,Sang-Chan Park
#t2001
#cIEEE Transactions on Robotics
#index2983612
#% 
#!
  
#*Data mining of printed-circuit board defects.
#@Andrew Kusiak,Christian Kurasek
#t2001
#cIEEE Transactions on Robotics
#index2983581
#% 
#!
  
#*Modeling and control of formations of nonholonomic mobile robots.
#@Jaydev P. Desai,James P. Ostrowski,Vijay Kumar
#t2001
#cIEEE Transactions on Robotics
#index2983617
#% 
#!
  
#*Applying a component-based software architecture to robotic workcell applications.
#@J. E. Beck,J. M. Reagin,T. E. Sweeny,R. L. Anderson,T. D. Garner
#t2000
#cIEEE Transactions on Robotics
#index2983743
#% 
#!
  
#*Pose tracking using laser scanning and minimalistic environmental models.
#@Patric Jensfelt,Henrik I. Christensen
#t2001
#cIEEE Transactions on Robotics
#index2983558
#% 
#!
  
#*Analytical time optimal control solution for a two-link planar aerobot with initial angular momentum.
#@Tsutomu Mita,Sang-Ho Hyon,Taek-Kun Nam
#t2001
#cIEEE Transactions on Robotics
#index2983593
#% 
#!
  
#*Info-Gap Approach to Multiagent Search Under Severe Uncertainty.
#@I. Sisso,Tal Shima,Yakov Ben-Haim
#t2010
#cIEEE Transactions on Robotics
#index2983752
#%119608
#%814392
#%2853024
#!
  
#*Passive Decomposition and Control of Nonholonomic Mechanical Systems.
#@Dongjun Lee
#t2010
#cIEEE Transactions on Robotics
#index2983762
#%3354571
#!
  
#*Autonomous vehicle navigation utilizing electrostatic potential fields and fuzzy logic.
#@Nikos Tsourveloudis,Kimon P. Valavanis,Timothy Hebert
#t2001
#cIEEE Transactions on Robotics
#index2983563
#% 
#!
  
#*Autonomous Behavior-Based Switched Top-Down and Bottom-Up Visual Attention for Mobile Robots.
#@Tingting Xu,Kolja Kühnlenz,Martin Buss
#t2010
#cIEEE Transactions on Robotics
#index2983771
#%128145
#%128728
#%368857
#%387767
#%389219
#%462741
#%746019
#%746064
#%1031916
#%1306794
#%1307037
#%1307067
#%1313482
#%1320605
#!
  
#*Multiple camera model-based 3-D visual servo.
#@J. Stavnitzky,D. Capson
#t2000
#cIEEE Transactions on Robotics
#index2983680
#% 
#!
  
#*An optimum design for 3-D fixture synthesis in a point set domain.
#@M. Y. Wang
#t2000
#cIEEE Transactions on Robotics
#index2983715
#% 
#!
  
#*A macro-level scheduling method using Lagrangian relaxation.
#@Yuanhui Zhang,Peter B. Luh,Katsumi Narimatsu,T. Moriya,T. Shimada,Lei Fang
#t2001
#cIEEE Transactions on Robotics
#index2983638
#% 
#!
  
#*Choosing good distance metrics and local planners for probabilistic roadmap methods.
#@Nancy M. Amato,O. Burçhan Bayazit,Lucia K. Dale,Christopher Jones,Daniel Vallejo
#t2000
#cIEEE Transactions on Robotics
#index2983671
#% 
#!
  
#*A Kalman-Filter-Based Method for Pose Estimation in Visual Servoing.
#@Farrokh Janabi-Sharifi,Mohammed Marey
#t2010
#cIEEE Transactions on Robotics
#index2983776
#%61438
#%168394
#%745467
#%907749
#%908352
#%1031458
#%1031348
#%1032233
#%1032299
#!
  
#*Phase-type approximation of stochastic Petri nets for analysis of manufacturing systems.
#@Shang-Tae Yee,Jose A. Ventura
#t2000
#cIEEE Transactions on Robotics
#index2983738
#% 
#!
  
#*Algorithms for sheet metal nesting.
#@Jeffrey W. Herrmann,David R. Delalio
#t2001
#cIEEE Transactions on Robotics
#index2983573
#% 
#!
  
#*Optimization of the simultaneous localization and map-building algorithm for real-time implementation.
#@José E. Guivant,Eduardo Mario Nebot
#t2001
#cIEEE Transactions on Robotics
#index2983576
#% 
#!
  
#*Haptic discrimination of softness in teleoperation: the role of the contact area spread rate.
#@Antonio Bicchi,Enzo Pasquale Scilingo,Danilo De Rossi
#t2000
#cIEEE Transactions on Robotics
#index2983689
#% 
#!
  
#*Rigid 6×6 parallel platform for precision 3-D micromanipulation: theory and design application.
#@V. T. Portman,B.-Z. Sandler,E. Zahavi
#t2000
#cIEEE Transactions on Robotics
#index2983663
#% 
#!
  
#*Folding cartons with fixtures: a motion planning approach.
#@Liang Lu,Srinivas Akella
#t2000
#cIEEE Transactions on Robotics
#index2983583
#% 
#!
  
#*The online solution of the hand-eye problem.
#@J. Angeles,Gilbert Soucy,Frank P. Ferrie
#t2000
#cIEEE Transactions on Robotics
#index2983664
#% 
#!
  
#*Intelligent organization for flexible manufacturing.
#@M. N. Varvatsoulakis,George N. Saridis,P. N. Paraskevopoulos
#t2000
#cIEEE Transactions on Robotics
#index2983717
#% 
#!
  
#*Topological simultaneous localization and mapping (SLAM): toward exact localization without explicit localization.
#@Howie Choset,Keiji Nagatani
#t2001
#cIEEE Transactions on Robotics
#index2983644
#% 
#!
  
#*Model-based tracking of complex articulated objects.
#@Kevin Nickels,Seth Hutchinson
#t2001
#cIEEE Transactions on Robotics
#index2983653
#% 
#!
  
#*Determining planar location via complement-free de Brujin sequences using discrete optical sensors.
#@Edward R. Scheinerman
#t2001
#cIEEE Transactions on Robotics
#index2983627
#% 
#!
  
#*Hybrid Microassembly Combining Robotics and Water Droplet Self-Alignment.
#@Veikko Sariola,Mirva Jääskeläinen,Quan Zhou
#t2010
#cIEEE Transactions on Robotics
#index2983753
#%1152053
#%1320532
#!
  
#*OctoMag: An Electromagnetic System for 5-DOF Wireless Micromanipulation.
#@Michael P. Kummer,Jake J. Abbott,Bradley Kratochvil,Ruedi Borer,Ali Sengul,Bradley J. Nelson
#t2010
#cIEEE Transactions on Robotics
#index2983751
#%497264
#%2877902
#%920598
#%1274307
#%89379
#!
  
#*Singularity analysis of three-legged parallel robots based on passive-joint velocities.
#@Guilin Yang,I-Ming Chen,Wei Lin,Jorge Angeles
#t2001
#cIEEE Transactions on Robotics
#index2983566
#% 
#!
  
#*A closed-form solution to the direct kinematics of nearly general parallel manipulators with optimally located three linear extra sensors.
#@Hian A. Bonev,Jeha Ryu,Sung-Gaun Kim,Sun-Kyu Lee
#t2001
#cIEEE Transactions on Robotics
#index2983594
#% 
#!
  
#*Grasp analysis as linear matrix inequality problems.
#@Li Han,Jeffrey C. Trinkle,Z. X. Li
#t2000
#cIEEE Transactions on Robotics
#index2983735
#% 
#!
  
#*Indirect adaptive control of reactive ion etching using neural networks.
#@David Stokes,Gary S. May
#t2001
#cIEEE Transactions on Robotics
#index2983601
#% 
#!
  
#*Comments on "Redesign of hybrid adaptive/robust motion control of rigid-link electrically-driven robot manipulators".
#@Marcio S. de Queiroz,F. Zhang,Warren E. Dixon
#t2000
#cIEEE Transactions on Robotics
#index2983708
#% 
#!
  
#*Correction of dead-reckoning errors in map building for mobile robots.
#@Matteo Golfarelli,Dario Maio,Stefano Rizzi
#t2001
#cIEEE Transactions on Robotics
#index2983643
#% 
#!
  
#*Manufacturing strategy analysis and system design-the complete cycle within a computer-aided design environment.
#@Bin Wu
#t2000
#cIEEE Transactions on Robotics
#index2983700
#% 
#!
  
#*Part transfer mode selection in a cyclic mixed-model line.
#@S. Karabati
#t2000
#cIEEE Transactions on Robotics
#index2983744
#% 
#!
  
#*Accelerating FAB-MAP With Concentration Inequalities.
#@Mark Cummins,Paul M. Newman
#t2010
#cIEEE Transactions on Robotics
#index2983774
#%293405
#%293662
#%835734
#%1017462
#%1274276
#!
  
#*Development of an ultrasonic motor as a fine-orienting stage.
#@Eko Purwanto,Shigeki Toyama
#t2001
#cIEEE Transactions on Robotics
#index2983605
#% 
#!
  
#*A stiffness-based quality measure for compliant grasps and fixtures.
#@Qiao Lin,Joel W. Burdick,Elon Rimon
#t2000
#cIEEE Transactions on Robotics
#index2983679
#% 
#!
  
#*Miniature Compliant Grippers With Vision-Based Force Sensing.
#@Annem Narayana Reddy,Nandan Maheshwari,Deepak Kumar Sahu,G. K. Ananthasuresh
#t2010
#cIEEE Transactions on Robotics
#index2983773
#%786759
#%1031721
#!
  
#*Steering kinematics for a center-articulated mobile robot.
#@Peter I. Corke,Peter R. Ridley
#t2001
#cIEEE Transactions on Robotics
#index2983600
#% 
#!
  
#*3D position sensing using the differences in the time-of-flights from a wave source to various receivers.
#@Ajay Mahajan,Maurice Walworth
#t2001
#cIEEE Transactions on Robotics
#index2983633
#% 
#!
  
#*The chaotic mobile robot.
#@Y. Nakamura,A. Sekiguchi
#t2001
#cIEEE Transactions on Robotics
#index2983570
#% 
#!
  
#*Intelligent robot deburring using adaptive fuzzy hybrid position/force control.
#@Feng-Yih Hsu,Li-Chen Fu
#t2000
#cIEEE Transactions on Robotics
#index2983661
#% 
#!
  
#*Fast versions of the Gilbert-Johnson-Keerthi distance algorithm: additional results and comparisons.
#@Chong Jin Ong,Elmer G. Gilbert
#t2001
#cIEEE Transactions on Robotics
#index2983620
#% 
#!
  
#*The aiding of a low-cost strapdown inertial measurement unit using vehicle model constraints for land vehicle applications.
#@Gamini Dissanayake,Salah Sukkarieh,Eduardo Mario Nebot,Hugh F. Durrant-Whyte
#t2001
#cIEEE Transactions on Robotics
#index2983575
#% 
#!
  
#*Smooth motion planning for car-like vehicles.
#@Florent Lamiraux,J.-P. Lammond
#t2001
#cIEEE Transactions on Robotics
#index2983561
#% 
#!
  
#*An extension to operational space for kinematically redundant manipulators: kinematics and dynamics.
#@Pyung-Hua Chang,Ki Cheol Park,Sukhan Lee
#t2000
#cIEEE Transactions on Robotics
#index2983718
#% 
#!
  
#*Quantitative analysis of human tactile illusory characteristic under visual environment and a haptic device of two-dimensional curved surface.
#@Jing-Long Wu,Sadao Kawamura
#t2000
#cIEEE Transactions on Robotics
#index2983647
#% 
#!
  
#*A discrete event systems modeling formalism based on event occurrence rules and precedences.
#@V. Chandra,R. Kumar
#t2001
#cIEEE Transactions on Robotics
#index2983628
#% 
#!
  
#*Design criteria for developing an automated live-bird transfer system.
#@Kok-Meng Lee
#t2001
#cIEEE Transactions on Robotics
#index2983586
#% 
#!
  
#*The eigenscrew decomposition of spatial stiffness matrices.
#@Shuguang Huang,Joseph M. Schimmels
#t2000
#cIEEE Transactions on Robotics
#index2983706
#% 
#!
  
#*Design and implementation of an adaptive process planner for disassembly processes.
#@Eyal Zussman,MengChu Zhou
#t2000
#cIEEE Transactions on Robotics
#index2983670
#% 
#!
  
#*A Geometrically Exact Model for Externally Loaded Concentric-Tube Continuum Robots.
#@D. Caleb Rucker,Bryan A. Jones,Robert J. Webster III
#t2010
#cIEEE Transactions on Robotics
#index2983761
#%1312817
#%2877890
#%2877977
#%2923216
#%3077330
#!
  
#*Deadlock avoidance for manufacturing systems with partially ordered process plans.
#@Widodo Sulistyono,Mark A. Lawley
#t2001
#cIEEE Transactions on Robotics
#index2983656
#% 
#!
  
#*Development and Dynamic Modeling of a New Hybrid Thermopiezoelectric Microactuator.
#@Micky Rakotondrabe,Ioan Alexandru Ivan
#t2010
#cIEEE Transactions on Robotics
#index2983754
#% 
#!
  
#*A Communication Robot in a Shopping Mall.
#@Takayuki Kanda,Masahiro Shiomi,Zenta Miyashita,Hiroshi Ishiguro,Norihiro Hagita
#t2010
#cIEEE Transactions on Robotics
#index2983769
#%12139
#%257131
#%348125
#%691575
#%691594
#%691644
#%691799
#%691823
#%691779
#%691802
#%691694
#%1050569
#%1116905
#!
  
#*Nonlinear controllability and stability analysis of adaptive image-based systems.
#@Fabio Conticelli,Benedetto Allotta
#t2001
#cIEEE Transactions on Robotics
#index2983614
#% 
#!
  
#*Design and analysis of a redundantly actuated parallel mechanism for rapid machining.
#@Jongwon Kim,Frank Chongwoo Park,Sun Joong Ryu,Jinwook Kim,Jae-Chul Hwang,Changbeom Park,C. C. Iurascu
#t2001
#cIEEE Transactions on Robotics
#index2983591
#% 
#!
  
#*Adaptive tracking control of a nonholonomic mobile robot.
#@Takanori Fukao,Hisashi Nakagawa,Norihiko Adachi
#t2000
#cIEEE Transactions on Robotics
#index2983683
#% 
#!
  
#*Scheduling semiconductor wafer fabrication by using ordinal optimization-based simulation.
#@Bo-Wei Hsieh,Chun-Hung Chen,Shi-Chung Chang
#t2001
#cIEEE Transactions on Robotics
#index2983619
#% 
#!
  
#*Multirobot Forest Coverage for Weighted and Unweighted Terrain.
#@Xiaoming Zheng,Sven Koenig,David Kempe,Sonal Jain
#t2010
#cIEEE Transactions on Robotics
#index2983750
#%29773
#%192349
#%352117
#%390291
#%569040
#%751584
#%752090
#%752086
#%752092
#%757995
#%1274138
#!
  
#*Modeling of Transmission Characteristics Across a Cable-Conduit System.
#@Varun Agrawal,William J. Peine,Bin Yao
#t2010
#cIEEE Transactions on Robotics
#index2983755
#%920554
#!
  
#*Failure modeling and process monitoring for flexible manufacturing systems using colored timed Petri nets.
#@Chung-Hsien Kuo,Han-Pang Huang
#t2000
#cIEEE Transactions on Robotics
#index2983736
#% 
#!
  
#*Triangulation-based fusion of sonar data with application in robot pose tracking.
#@Olle Wijk,Henrik I. Christensen
#t2000
#cIEEE Transactions on Robotics
#index2983728
#% 
#!
  
#*The bounds and realization of spatial compliances achieved with simple serial elastic mechanisms.
#@Shuguang Huang,Joseph M. Schimmels
#t2000
#cIEEE Transactions on Robotics
#index2983719
#% 
#!
  
#*Discrete-time Markov reward models of automated manufacturing systems with multiple part types and random rewards.
#@R. Mullubhatla,K. R. Pattipati
#t2000
#cIEEE Transactions on Robotics
#index2983741
#% 
#!
  
#*A fast growth distance algorithm for incremental motions.
#@Chong-Jin Ong,E. Huang,Sun-Mog Hong
#t2000
#cIEEE Transactions on Robotics
#index2983678
#% 
#!
  
#*Transfer line design with uncertain machine performance information.
#@E. McDonnell Feit,S. D. Wu
#t2000
#cIEEE Transactions on Robotics
#index2983714
#% 
#!
  
#*A Systematic Procedure for the Elastodynamic Modeling and Identification of Robot Manipulators.
#@M. Rognant,Eric Courteille,Patrick Maurine
#t2010
#cIEEE Transactions on Robotics
#index2983764
#%920533
#!
  
#*A new method for estimating parameters of a dynamic robot model.
#@M. M. Olsen,Henrik Gordon Petersen
#t2001
#cIEEE Transactions on Robotics
#index2983578
#% 
#!
  
#*Positioning of toleranced parts in a 2D polygonal assembly and its use in tolerance analysis.
#@Bing Li,Utpal Roy
#t2001
#cIEEE Transactions on Robotics
#index2983564
#% 
#!
  
#*Iterative regulation of an electrically driven flexible-joint robot with model uncertainty.
#@A. Ailon,R. Lozano,M. I. Gil'
#t2000
#cIEEE Transactions on Robotics
#index2983697
#% 
#!
  
#*A slow manifold approach for the control of mobile robots not satisfying the kinematic constraints.
#@I. Motte,G. Campion
#t2000
#cIEEE Transactions on Robotics
#index2983692
#% 
#!
  
#*Double active universal joint (DAUJ): robotic joint mechanism for human-like motions.
#@SungMoo Ryew,Hyoukryeol Choi
#t2001
#cIEEE Transactions on Robotics
#index2983642
#% 
#!
  
#*Scheduling flexible flow shops with sequence-dependent setup effects.
#@Chung-Yang Liu,Shi-Chung Chang
#t2000
#cIEEE Transactions on Robotics
#index2983698
#% 
#!
  
#*Production scheduling in a semiconductor wafer fabrication facility producing multiple product types with distinct due dates.
#@Yeong-Dae Kim,Jae-Gon Kim,Bum Choi,Hyung-Un Kim
#t2001
#cIEEE Transactions on Robotics
#index2983592
#% 
#!
  
#*Performance and H optimality of PID trajectory tracking controller for Lagrangian systems.
#@Youngjin Choi,Wan Kyun Chung,Il Hong Suh
#t2001
#cIEEE Transactions on Robotics
#index2983585
#% 
#!
  
#*Probabilistic self-localization for mobile robots.
#@Clark F. Olson
#t2000
#cIEEE Transactions on Robotics
#index2983705
#% 
#!
  
#*Note on the normal form of a spatial stiffness matrix.
#@R. G. Roberts
#t2001
#cIEEE Transactions on Robotics
#index2983622
#% 
#!
  
#*Combining hybrid Petri nets and hybrid automata.
#@Alexandru Tiberiu Sava,Hassane Alla
#t2001
#cIEEE Transactions on Robotics
#index2983606
#% 
#!
  
#*Scheduling in dual gripper robotic cells for productivity gains.
#@Suresh P. Sethi,Jeffrey B. Sidney,Chelliah Sriskandarajah
#t2001
#cIEEE Transactions on Robotics
#index2983567
#% 
#!
  
#*Near-time-optimal trajectory planning for wheeled mobile robots with translational and rotational sections.
#@JongSuk Choi,Byung Kook Kim
#t2001
#cIEEE Transactions on Robotics
#index2983648
#% 
#!
  
#*Automata-based modeling and control synthesis for manufacturing workcells with part-routing flexibility.
#@Alejandro Ramirez-Serrano,C. Sriskandarajah,Beno Benhabib
#t2000
#cIEEE Transactions on Robotics
#index2983749
#% 
#!
  
#*Modeling and supervisory control of a disassembly automation workcell based on blocking topology.
#@Kok-Meng Lee,M. M. Bailey-van Kuren
#t2000
#cIEEE Transactions on Robotics
#index2983662
#% 
#!
  
#*Deadlock detection, prevention, and avoidance for automated tool sharing systems.
#@Nagi Gebraeel,Mark A. Lawley
#t2001
#cIEEE Transactions on Robotics
#index2983655
#% 
#!
  
#*Delay-Dependent Stability Criteria of Teleoperation Systems With Asymmetric Time-Varying Delays.
#@Chang-Chun Hua,Xiaoping P. Liu
#t2010
#cIEEE Transactions on Robotics
#index2983779
#%1181028
#%1274313
#%2878020
#!
  
#*Manipulability of cooperating robots with unactuated joints and closed-chain mechanisms.
#@Antonio Bicchi,Domenico Prattichizzo
#t2000
#cIEEE Transactions on Robotics
#index2983713
#% 
#!
  
#*Sensor-based construction of a retract-like structure for a planar rod robot.
#@Howie Choset,Ji Yeong Lee
#t2001
#cIEEE Transactions on Robotics
#index2983639
#% 
#!
  
#*Customer demand satisfaction in production systems: a due-time performance approach.
#@Jingshan Li,Semyon M. Meerkov
#t2001
#cIEEE Transactions on Robotics
#index2983599
#% 
#!
  
#*Decentralized Feedback Controllers for Multiagent Teams in Environments With Obstacles.
#@Nora Ayanian,Vijay Kumar
#t2010
#cIEEE Transactions on Robotics
#index2983770
#%3002009
#!
  
#*Modeling Deformations of General Parametric Shells Grasped by a Robot Hand.
#@Jiang Tian,Yan-Bin Jia
#t2010
#cIEEE Transactions on Robotics
#index2983763
#%593127
#%593173
#%593667
#%594129
#%594062
#%692732
#%920567
#%1306714
#%1306756
#!
  
#*Behavior relations in synthesis process of Petri net models.
#@Huaiqing Wang,Changjun Jiang,Shaoyi Liao
#t2000
#cIEEE Transactions on Robotics
#index2983727
#% 
#!
  
#*Queueing network models in the design and analysis of semiconductor wafer fabs.
#@Sunil Kumar,P. R. Kumar
#t2001
#cIEEE Transactions on Robotics
#index2983636
#% 
#!
  
#*Design and control of flexure jointed hexapods.
#@John E. McInroy,J. C. Hamann
#t2000
#cIEEE Transactions on Robotics
#index2983684
#% 
#!
  
#*Custom design of facility layouts for multiproduct facilities using layout modules.
#@Shahrukh A. Irani,Heng Huang
#t2000
#cIEEE Transactions on Robotics
#index2983733
#% 
#!
  
#*Extended-range hybrid tracker and applications to motion and camera tracking in manufacturing systems.
#@Dan Zetu,Pat Banerjee,Darren Thompson
#t2000
#cIEEE Transactions on Robotics
#index2983691
#% 
#!
  
#*Development of partial model-based torque control of AC induction motors.
#@Dong Sun,James K. Mills
#t2001
#cIEEE Transactions on Robotics
#index2983577
#% 
#!
  
#*Robotic melon harvesting.
#@Yael Edan,D. Rogozin,T. Flash,G. E. Miles
#t2000
#cIEEE Transactions on Robotics
#index2983677
#% 
#!
  
#*Set membership localization of mobile robots via angle measurements.
#@Andrea Garulli,Antonio Vicino
#t2001
#cIEEE Transactions on Robotics
#index2983572
#% 
#!
  
#*Forward/inverse force transmission capability analyses of fully parallel manipulators.
#@H. S. Kim,Y. J. Choi
#t2001
#cIEEE Transactions on Robotics
#index2983625
#% 
#!
  
#*A behavioral layer architecture for telecollaborative virtual manufacturing operations.
#@A. Banerjee,P. Banerjee,T. DeFanti,A. Hudson,B. Dodds,J. R. Curtis
#t2000
#cIEEE Transactions on Robotics
#index2983720
#% 
#!
  
#*Identifying single-ended contact formations from force sensor patterns.
#@Marjorie Skubic,Richard A. Volz
#t2000
#cIEEE Transactions on Robotics
#index2983730
#% 
#!
  
#*Kinematic analysis and design of surface wave distributed actuators with application to a powered bed for bedridden patients.
#@Joseph Spano,H. Harry Asada
#t2000
#cIEEE Transactions on Robotics
#index2983704
#% 
#!
  
#*Comments on "An Optimality Principle Governing Human Walking".
#@Timothy Bretl,Gustavo Arechavaleta,Abdullah Akce,Jean-Paul Laumond
#t2010
#cIEEE Transactions on Robotics
#index2983756
#% 
#!
  
#*Computing the sensory uncertainty field of a vision-based localization sensor.
#@Amit Adam,Ehud Rivlin,Ilan Shimshoni
#t2001
#cIEEE Transactions on Robotics
#index2983580
#% 
#!
  
#*Minimal realization of an arbitrary spatial stiffness matrix with a parallel connection of simple and complex springs.
#@R. G. Roberts
#t2000
#cIEEE Transactions on Robotics
#index2983669
#% 
#!
  
#*Randomized path planning for linkages with closed kinematic chains.
#@Jeffery H. Yakey,Steven M. LaValle,Lydia E. Kavraki
#t2001
#cIEEE Transactions on Robotics
#index2983616
#% 
#!
  
#*DT-bottlenecks in serial production lines: theory and application.
#@Shu-Yin Chiang,Chih-Tsung Kuo,Semyon M. Meerkov
#t2000
#cIEEE Transactions on Robotics
#index2983676
#% 
#!
  
#*The kinematic decoupling of parallel manipulators using joint-sensor data.
#@L. Baron,J. Angles
#t2000
#cIEEE Transactions on Robotics
#index2983742
#% 
#!
  
#*A "constrain and move" approach to distributed object manipulation.
#@Majid Nili Ahmadabadi,Eiji Nakano
#t2001
#cIEEE Transactions on Robotics
#index2983611
#% 
#!
  
#*A geometric method for computation of datum reference frames.
#@J. B. Gou,Y. X. Chu,Z. H. Xiong,Z. X. Li
#t2000
#cIEEE Transactions on Robotics
#index2983695
#% 
#!
  
#*A new partitioned approach to image-based visual servo control.
#@Peter I. Corke,Seth Hutchinson
#t2001
#cIEEE Transactions on Robotics
#index2983598
#% 
#!
  
#*Kinematic controllability for decoupled trajectory planning in underactuated mechanical systems.
#@Francesco Bullo,Kevin M. Lynch
#t2001
#cIEEE Transactions on Robotics
#index2983589
#% 
#!
  
#*Pareto Optimality and Multiobjective Trajectory Planning for a 7-DOF Redundant Manipulator.
#@A. Guigue,Mojtaba Ahmadi,R. G. Langlois,M. J. D. Hayes
#t2010
#cIEEE Transactions on Robotics
#index2983757
#%2889932
#!
  
#*Optimal rate allocation in unreliable, assembly/disassembly production networks with blocking.
#@Vassilis S. Kouikoglou
#t2000
#cIEEE Transactions on Robotics
#index2983721
#% 
#!
  
#*Automatic decomposition of planned assembly sequences into skill primitives.
#@Heiko Mosemann,Friedrich M. Wahl
#t2001
#cIEEE Transactions on Robotics
#index2983607
#% 
#!
  
#*Nonlinear control of hydraulic robots.
#@Mohammad Reza Sirouspour,Septimiu E. Salcudean
#t2001
#cIEEE Transactions on Robotics
#index2983626
#% 
#!
  
#*Rate-hardness: a new performance metric for haptic interfaces.
#@Dale A. Lawrence,Lucy Y. Pao,A. M. Dougherty,M. A. Salada,Y. Pavlou
#t2000
#cIEEE Transactions on Robotics
#index2983668
#% 
#!
  
#*Automatic camera calibration for a multiple-sensor integrated coordinate measurement system.
#@Tzung-Sz Shen,Chia-Hsiang Menq
#t2001
#cIEEE Transactions on Robotics
#index2983569
#% 
#!
  
#*Teleoperation assistance through variable velocity mapping.
#@Rajiv V. Dubey,S. E. Everett,Norali Pernalete,Karan A. Manocha
#t2001
#cIEEE Transactions on Robotics
#index2983649
#% 
#!
  
#*Configuration manifolds and their applications to robot dynamic modeling and control.
#@Edward Y. L. Gu
#t2000
#cIEEE Transactions on Robotics
#index2983694
#% 
#!
  
#*Trajectory Planning of Unicycle Mobile Robots With a Trapezoidal-Velocity Constraint.
#@Moussa Haddad,W. Khalil,H. E. Lehtihet
#t2010
#cIEEE Transactions on Robotics
#index2983780
#% 
#!
  
#*Payload maximization for open chained manipulators: finding weightlifting motions for a Puma 762 robot.
#@Chia-Yu E. Wang,Wojciech K. Timoszyk,James E. Bobrow
#t2001
#cIEEE Transactions on Robotics
#index2983588
#% 
#!
  
#*Geometrical matching for mobile robot localization.
#@El Mustapha Mouaddib,Bruno Marhic
#t2000
#cIEEE Transactions on Robotics
#index2983734
#% 
#!
  
#*Fault detection for robot manipulators with parametric uncertainty: a prediction-error-based approach.
#@Warren E. Dixon,Ian D. Walker,Darren M. Dawson,J. P. Hartranft
#t2000
#cIEEE Transactions on Robotics
#index2983685
#% 
#!
  
#*A Motion-Planning Algorithm for the Rolling-Body Problem.
#@François Alouges,Yacine Chitour,Ruixing Long
#t2010
#cIEEE Transactions on Robotics
#index2983766
#%2877962
#%920333
#!
  
#*Design lessons for building agile manufacturing systems.
#@Wyatt S. Newman,Andy Podgurski,Roger D. Quinn,Frank L. Merat,Michael S. Branicky,Nick A. Barendt,Greg C. Causey,Erin L. Haaser,Yoohwan Kim,Jayendran Swaminathan,Virgilio B. Velasco Jr.
#t2000
#cIEEE Transactions on Robotics
#index2983659
#% 
#!
  
#*Accurate mobile robot dead-reckoning with a precision-calibrated fiber-optic gyroscope.
#@Hakyoung Chung,Lauro Ojeda,Johann Borenstein
#t2001
#cIEEE Transactions on Robotics
#index2983631
#% 
#!
  
#*Cue integration for visual servoing.
#@Danica Kragic,Henrik I. Christensen
#t2001
#cIEEE Transactions on Robotics
#index2983621
#% 
#!
  
#*New potential functions for mobile robot path planning.
#@S. S. Ge,Y. J. Cui
#t2000
#cIEEE Transactions on Robotics
#index2983703
#% 
#!
  
#*Rigid body analysis of the indeterminate grasp force in power grasps.
#@Toru Omata,Kazuyuki Nagata
#t2000
#cIEEE Transactions on Robotics
#index2983712
#% 
#!
  
#*A solution to the simultaneous localization and map building (SLAM) problem.
#@Gamini Dissanayake,Paul M. Newman,Steve Clark,Hugh F. Durrant-Whyte,M. Csorba
#t2001
#cIEEE Transactions on Robotics
#index2983650
#% 
#!
  
#*Design of steering mechanism and control of nonholonomic trailer systems.
#@Yoshihiko Nakamura,Hideaki Ezaki,Yuegang Tan,Woojin Chung
#t2001
#cIEEE Transactions on Robotics
#index2983597
#% 
#!
  
#*On dynamic control of finger sliding and object motion in manipulation with multifingered hands.
#@Xin-Zhi Zheng,R. Nakashima,Tsuneo Yoshikawa
#t2000
#cIEEE Transactions on Robotics
#index2983729
#% 
#!
  
#*Design and control of the nonholonomic manipulator.
#@Yoshihiko Nakamura,Woojin Chung,Ole Jakob Sørdalen
#t2001
#cIEEE Transactions on Robotics
#index2983641
#% 
#!
  
#*First-order hybrid Petri nets: a model for optimization and control.
#@Fabio Balduzzi,Alessandro Giua,Giuseppe Menga
#t2000
#cIEEE Transactions on Robotics
#index2983724
#% 
#!
  
#*Recurrence, controllability, and stabilization of juggling.
#@Kevin M. Lynch,Craig K. Black
#t2001
#cIEEE Transactions on Robotics
#index2983562
#% 
#!
  
#*Time-optimal controls of kinematically redundant manipulators with geometric constraints.
#@Miroslaw Galicki
#t2000
#cIEEE Transactions on Robotics
#index2983739
#% 
#!
  
#*An integrated approach to disassembly planning and demanufacturing operation.
#@Ying Tang,MengChu Zhou,Reggie J. Caudill
#t2001
#cIEEE Transactions on Robotics
#index2983624
#% 
#!
  
#*Formation constrained multi-agent control.
#@Magnus Egerstedt,Xiaoming Hu
#t2001
#cIEEE Transactions on Robotics
#index2983613
#% 
#!
  
#*Adaptive output regulation of robot manipulators under actuator constraints.
#@Abdelhamid Laib
#t2000
#cIEEE Transactions on Robotics
#index2983658
#% 
#!
  
#*Force Tracking With Feed-Forward Motion Estimation for Beating Heart Surgery.
#@Shelten G. Yuen,Douglas P. Perrin,Nikolay V. Vasilyev,Pedro J. del Nido,Robert D. Howe
#t2010
#cIEEE Transactions on Robotics
#index2983767
#%498244
#%498823
#%1043685
#%1252674
#%1274326
#!
  
#*Avoiding deadlock and reducing starvation and blocking in automated manufacturing systems.
#@Naiqi Wu,MengChu Zhou
#t2001
#cIEEE Transactions on Robotics
#index2983590
#% 
#!
  
#*A novel stereo camera system by a biprism.
#@DooHyun Lee,InSo Kweon
#t2000
#cIEEE Transactions on Robotics
#index2983748
#% 
#!
  
#*Neural network-based target differentiation using sonar for robotics applications.
#@Billur Barshan,Birsel Ayrulu,Simukai W. Utete
#t2000
#cIEEE Transactions on Robotics
#index2983686
#% 
#!
  
#*Impedance control for biped robot locomotion.
#@Jong Hyeon Park
#t2001
#cIEEE Transactions on Robotics
#index2983634
#% 
#!
  
#*Photoplethysmograph fingernail sensors for measuring finger forces without haptic obstruction.
#@Stephen A. Mascaro,H. Harry Asada
#t2001
#cIEEE Transactions on Robotics
#index2983632
#% 
#!
  
#*A Variable Stiffness PZT Actuator Having Tunable Resonant Frequencies.
#@Thomas W. Secord,H. Harry Asada
#t2010
#cIEEE Transactions on Robotics
#index2983777
#%1050505
#%1307024
#!
  
#*Adaptive Cancelation of Self-Generated Sensory Signals in a Whisking Robot.
#@Sean R. Anderson,Martin J. Pearson,Anthony G. Pipe,Tony J. Prescott,Paul Dean,John Porrill
#t2010
#cIEEE Transactions on Robotics
#index2983758
#%757789
#%1026825
#%1044445
#%1050448
#%1227246
#%1266707
#%1341244
#!
  
#*On the analysis of a new spatial three-degrees-of-freedom parallel manipulator.
#@Xin-Jun Liu,Jinsong Wang,Feng Gao,Liping Wang
#t2001
#cIEEE Transactions on Robotics
#index2983637
#% 
#!
  
#*Dynamics analysis of the Gough-Stewart platform manipulator.
#@Min-Jie Liu,Cong-Xin Li,Chong-Ni Li
#t2000
#cIEEE Transactions on Robotics
#index2983675
#% 
#!
  
#*Computation of 3-D form-closure grasps.
#@Dan Ding,Yun-Hui Lee,Shuguo Wang
#t2001
#cIEEE Transactions on Robotics
#index2983657
#% 
#!
  
#*Dynamics computation of structure-varying kinematic chains and its application to human figures.
#@Yoshihiko Nakamura,Katsu Yamane
#t2000
#cIEEE Transactions on Robotics
#index2983731
#% 
#!
  
#*Lidar design, use, and calibration concepts for correct environmental detection.
#@M. D. Adams
#t2000
#cIEEE Transactions on Robotics
#index2983711
#% 
#!
  
#*Petri-net and GA-based approach to modeling, scheduling, and performance evaluation for wafer fabrication.
#@Jyh-Horng Chen,Li-Chen Fu,Ming-Hung Lin,An-Chih Huang
#t2001
#cIEEE Transactions on Robotics
#index2983608
#% 
#!
  
#*Hybrid Modelling and Control of Obstacle-Aided Snake Robot Locomotion.
#@Pål Liljebäck,Kristin Ytterstad Pettersen,Øyvind Stavdahl,Jan Tommy Gravdahl
#t2010
#cIEEE Transactions on Robotics
#index2983765
#%1307089
#!
  
#*Rolling-based manipulation for multiple objects.
#@K. Harada,M. Kaneko,T. Tsujii
#t2000
#cIEEE Transactions on Robotics
#index2983722
#% 
#!
  
#*Part orientation with one or two stable equilibria using programmable force fields.
#@Karl-Friedrich Böhringer,Bruce Randall Donald,Lydia E. Kavraki,Florent Lamiraux
#t2000
#cIEEE Transactions on Robotics
#index2983667
#% 
#!
  
#*Active global localization for a mobile robot using multiple hypothesis tracking.
#@Patric Jensfelt,Steen Kristensen
#t2001
#cIEEE Transactions on Robotics
#index2983559
#% 
#!
  
#*A general framework for cobot control.
#@R. Brent Gillespie,J. Edward Colgate,Michael A. Peshkin
#t2001
#cIEEE Transactions on Robotics
#index2983587
#% 
#!
  
#*Deadlock avoidance in flexible manufacturing systems using finite automata.
#@Ali Yalcin,Thomas O. Boucher
#t2000
#cIEEE Transactions on Robotics
#index2983747
#% 
#!
  
#*Hyperbolic trajectories for pick-and-place operations to elude obstacles.
#@C. M. Muller-Karger,A. Leonell Granados Mirena,J. T. Scarpati Lopez
#t2000
#cIEEE Transactions on Robotics
#index2983674
#% 
#!
  
#*Measuring and reducing the Euclidean-space effects of robotic joint failures.
#@James D. English,Anthony A. Maciejewski
#t2000
#cIEEE Transactions on Robotics
#index2983693
#% 
#!
  
#*Designing mixed-product assembly lines.
#@Brahim Rekiek,Pierre De Lit,Alain Delchambre
#t2000
#cIEEE Transactions on Robotics
#index2983723
#% 
#!
  
#*External force control for underwater vehicle-manipulator systems.
#@Gianluca Antonelli,Stefano Chiaverini,Nilanjan Sarkar
#t2001
#cIEEE Transactions on Robotics
#index2983623
#% 
#!
  
#*Pure Topological Mapping in Mobile Robotics.
#@Dimitri Marinakis,Gregory Dudek
#t2010
#cIEEE Transactions on Robotics
#index2983768
#%13633
#%14152
#%16027
#%104654
#%389832
#%390576
#%610408
#%621504
#%745807
#%758018
#%920165
#%1274142
#%1274217
#%1304417
#!
  
#*Multisensor fusion for simultaneous localization and map building.
#@José A. Castellanos,José Neira,Juan D. Tardós
#t2001
#cIEEE Transactions on Robotics
#index2983565
#% 
#!
  
#*Manipulator path planning by decomposition: algorithm and analysis.
#@Arjang Hourtash,Mahmoud Tarokh
#t2001
#cIEEE Transactions on Robotics
#index2983574
#% 
#!
  
#*Automatic selection of fixturing surfaces and fixturing points for polyhedral workpieces.
#@Dan Ding,Yun-Hui Liu,Michael Yu Wang,Shuguo Wang
#t2001
#cIEEE Transactions on Robotics
#index2983618
#% 
#!
  
#*Tracking control of uncertain dynamic nonholonomic system and its application to wheeled mobile robots.
#@Wenjie Dong,Wei Huo,S. K. Tso,W. L. Xu
#t2000
#cIEEE Transactions on Robotics
#index2983732
#% 
#!
  
#*Corrections to "synthesis using resource control nets for modeling shared-resource systems".
#@MuDer Jeng,Frank DiCesare,Xiaolan Xie
#t2000
#cIEEE Transactions on Robotics
#index2983740
#% 
#!
  
#*A closed-form forward kinematics solution for the 6-6 Stewart platform.
#@Ping Ji,Hongtao Wu
#t2001
#cIEEE Transactions on Robotics
#index2983609
#% 
#!
  
#*Human-machine cooperative telemanipulation with motion and force scaling using task-oriented virtual tool dynamics.
#@Tomotaka Itoh,Kazuhiro Kosuge,Toshio Fukuda
#t2000
#cIEEE Transactions on Robotics
#index2983660
#% 
#!
  
#*Automatic data segmentation for geometric feature extraction from unorganized 3-D coordinate points.
#@Jianbing Huang,Chia-Hsiang Menq
#t2001
#cIEEE Transactions on Robotics
#index2983604
#% 
#!
  
#*Optimizing fixture layout in a point-set domain.
#@Michael Yu Wang,Diana M. Pelinescu
#t2001
#cIEEE Transactions on Robotics
#index2983646
#% 
#!
  
#*Design and analysis of a sun sensor for planetary rover absolute heading detection.
#@Ashitey Trebi-Ollennu,Terrance L. Huntsberger,Yang Cheng,Eric T. Baumgartner,Brett Kennedy,Paul S. Schenker
#t2001
#cIEEE Transactions on Robotics
#index2983651
#% 
#!
  
#*A learning controller for robot manipulators using Fourier series.
#@Xiaoqi Tang,Lilong Cai,Weiqing Huang
#t2000
#cIEEE Transactions on Robotics
#index2983701
#% 
#!
  
#*Scheduling no-wait production with time windows and flexible processing times.
#@Fabrice Chauvet,Jean-Marie Proth,Yorai Wardi
#t2001
#cIEEE Transactions on Robotics
#index2983560
#% 
#!
  
#*Guaranteed stability of haptic systems with nonlinear virtual environments.
#@Brian E. Miller,J. Edward Colgate,R. A. Freeman
#t2000
#cIEEE Transactions on Robotics
#index2983665
#% 
#!
  
#*Tool requirements planning in a flexible manufacturing system with an automatic tool transporter.
#@Yeong-Dae Kim,Geun-Cheol Lee,Seong-Kook Choi,Seung-Kil Lim
#t2001
#cIEEE Transactions on Robotics
#index2983595
#% 
#!
  
#*Lagrangian relaxation neural networks for job shop scheduling.
#@Peter B. Luh,Xing Zhao,Yajun Wang,Lakshman S. Thakur
#t2000
#cIEEE Transactions on Robotics
#index2983696
#% 
#!
  
#*A redundancy-based iterative approach for avoiding joint limits: application to visual servoing.
#@François Chaumette,Éric Marchand
#t2001
#cIEEE Transactions on Robotics
#index2983629
#% 
#!
  
#*Planning walking patterns for a biped robot.
#@Qiang Huang,Kazuhito Yokoi,Shuuji Kajita,Kenji Kaneko,Hirohiko Arai,Noriho Koyachi,Kazuo Tanie
#t2001
#cIEEE Transactions on Robotics
#index2983568
#% 
#!
  
#*A brachiating robot controller.
#@Jun Nakanishi,Toshio Fukuda,Daniel E. Koditschek
#t2000
#cIEEE Transactions on Robotics
#index2983682
#% 
#!
  
#*Compression of time in manufacturing systems.
#@Chung-Chi Hsieh,T. C. Woo
#t2000
#cIEEE Transactions on Robotics
#index2983726
#% 
#!
  
#*Hyperbolic normal forms for manipulator kinematics.
#@K. Tchou
#t2000
#cIEEE Transactions on Robotics
#index2983710
#% 
#!
  
#*Timed Petri nets in modeling and analysis of cluster tools.
#@Wlodzimierz M. Zuberek
#t2001
#cIEEE Transactions on Robotics
#index2983579
#% 
#!
  
#*Predictive Control for Constrained Image-Based Visual Servoing.
#@Guillaume Allibert,Estelle Courtial,François Chaumette
#t2010
#cIEEE Transactions on Robotics
#index2983778
#%1307107
#%1313127
#%1320633
#%2877850
#!
  
#*Feedback control of production-distribution systems with unknown demand and delays.
#@Franco Blanchini,Raffaele Pesenti,Franca Rinaldi,Walter Ukovich
#t2000
#cIEEE Transactions on Robotics
#index2983687
#% 
#!
  
#*Robotic Assistance to Flexible Endoscopy by Physiological-Motion Tracking.
#@Laurent Ott,Florent Nageotte,Philippe Zanne,Michel de Mathelin
#t2011
#cIEEE Transactions on Robotics
#index3086412
#% 
#!
  
#*Triaxial MRI-Compatible Fiber-optic Force Sensor.
#@U-Xuan Tan,Bo Yang,Rao Gullapalli,Jaydev P. Desai
#t2011
#cIEEE Transactions on Robotics
#index3086422
#% 
#!
  
#*Haptic Device Using a Newly Developed Redundant Parallel Mechanism.
#@Jumpei Arata,Hiroyuki Kondo,Norio Ikedo,Hideo Fujimoto
#t2011
#cIEEE Transactions on Robotics
#index3086415
#% 
#!
  
#*On the Time to Search for an Intermittent Signal Source Under a Limited Sensing Range.
#@Dezhen Song,Chang-Young Kim,Jingang Yi
#t2011
#cIEEE Transactions on Robotics
#index3086443
#% 
#!
  
#*DTAR - A Dynamic, Tube-Ascending Robot.
#@Amir Degani,Howie Choset,Matthew T. Mason
#t2011
#cIEEE Transactions on Robotics
#index3086434
#% 
#!
  
#*Context Identification for Efficient Multiple-Model State Estimation of Systems With Cyclical Intermittent Dynamics.
#@Sarjoun Skaff,Alfred A. Rizzi,Howie Choset,Matthew Tesch
#t2011
#cIEEE Transactions on Robotics
#index3086423
#% 
#!
  
#*Kinematic Modeling of Bird Locomotion from Experimental Data.
#@Vincent Hugel,Remi Hackert,Anick Abourachid
#t2011
#cIEEE Transactions on Robotics
#index3086442
#% 
#!
  
#*A Little More, a Lot Better: Improving Path Quality by a Path-Merging Algorithm.
#@Barak Raveh,Angela Enosh,Dan Halperin
#t2011
#cIEEE Transactions on Robotics
#index3086414
#% 
#!
  
#*A Random-Finite-Set Approach to Bayesian SLAM.
#@John Mullane,Ba-Ngu Vo,Martin David Adams,Ba-Tuong Vo
#t2011
#cIEEE Transactions on Robotics
#index3086435
#% 
#!
  
#*A 2-D Passive-Dynamic-Running Biped With Elastic Elements.
#@Dai Owaki,Masatoshi Koyama,Shin'ichi Yamaguchi,Shota Kubo,Akio Ishiguro
#t2011
#cIEEE Transactions on Robotics
#index3086417
#% 
#!
  
#*Interval-Analysis-Based Determination of the Wrench-Feasible Workspace of Parallel Cable-Driven Robots.
#@Marc Gouttefarde,David Daney,Jean-Pierre Merlet
#t2011
#cIEEE Transactions on Robotics
#index3086428
#% 
#!
  
#*Improved Stability Results for Visual Tracking of Robotic Manipulators Based on the Depth-Independent Interaction Matrix.
#@Xinwu Liang,Xinhan Huang,Min Wang,Xiangjin Zeng
#t2011
#cIEEE Transactions on Robotics
#index3086445
#% 
#!
  
#*A Robot Joint With Variable Stiffness Using Leaf Springs.
#@Junho Choi,Seonghun Hong,Woosub Lee,Sungchul Kang,Munsang Kim
#t2011
#cIEEE Transactions on Robotics
#index3086416
#% 
#!
  
#*Feasible and Optimal Path Planning in Strong Current Fields.
#@Michaël Soulignac
#t2011
#cIEEE Transactions on Robotics
#index3086419
#% 
#!
  
#*Erratum to "Passive Decomposition and Control of Nonholomic Mechanical Systems" [Dec 10 978-992].
#@Dongjun Lee
#t2011
#cIEEE Transactions on Robotics
#index3086432
#% 
#!
  
#*Conflict Resolution in Free-Ranging Multivehicle Systems: A Resource Allocation Paradigm.
#@Spyros A. Reveliotis,Elzbieta Roszkowska
#t2011
#cIEEE Transactions on Robotics
#index3086439
#% 
#!
  
#*A Fundamental Linear Systems Conflict Between Performance and Passivity in Haptic Rendering.
#@Paul G. Griffiths,R. Brent Gillespie,James S. Freudenberg
#t2011
#cIEEE Transactions on Robotics
#index3086429
#% 
#!
  
#*A Minimalist Algorithm for Multirobot Continuous Coverage.
#@Giorgio Cannata,Antonio Sgorbissa
#t2011
#cIEEE Transactions on Robotics
#index3086444
#% 
#!
  
#*The Forward Kinematics of 3-R _ P R Planar Robots: A Review and a Distance-Based Formulation.
#@Nicolás Rojas,Federico Thomas
#t2011
#cIEEE Transactions on Robotics
#index3086427
#% 
#!
  
#*Mapping and Pursuit-Evasion Strategies For a Simple Wall-Following Robot.
#@Max Katsev,Anna Yershova,Benjamín Tovar,Robert Ghrist,Steven M. LaValle
#t2011
#cIEEE Transactions on Robotics
#index3086433
#% 
#!
  
#*Estimation of Absolute Orientation for a Bipedal Robot: Experimental Results.
#@Vincent Lebastard,Yannick Aoustin,Franck Plestan
#t2011
#cIEEE Transactions on Robotics
#index3086431
#% 
#!
  
#*Feedback Control of Planar Biped Robot With Regulable Step Length and Walking Speed.
#@Yong Hu,Gangfeng Yan,Zhiyun Lin
#t2011
#cIEEE Transactions on Robotics
#index3086426
#% 
#!
  
#*Stiffness Control of Surgical Continuum Manipulators.
#@Mohsen Mahvash,Pierre E. Dupont
#t2011
#cIEEE Transactions on Robotics
#index3086413
#% 
#!
  
#*A Sliding-Mode-Control Law for Mobile Robots Based on Epipolar Visual Servoing From Three Views.
#@Hector M. Becerra,Gonzalo López-Nicolás,Carlos Sagüés
#t2011
#cIEEE Transactions on Robotics
#index3086430
#% 
#!
  
#*Active 3D Object Localization Using a Humanoid Robot.
#@Alexander Andreopoulos,Stephan Hasler,Heiko Wersing,Herbert Janssen,John K. Tsotsos,Edgar Körner
#t2011
#cIEEE Transactions on Robotics
#index3086424
#% 
#!
  
#*Adaptive Position Tracking of VTOL UAVs.
#@Andrew Roberts,Abdelhamid Tayebi
#t2011
#cIEEE Transactions on Robotics
#index3086418
#% 
#!
  
#*State Estimation Based on the Concept of Continuous Symmetry and Observability Analysis: The Case of Calibration.
#@A. Martinelli
#t2011
#cIEEE Transactions on Robotics
#index3086438
#% 
#!
  
#*Recursive Inverse Dynamics of Mobile Multibody Systems With Joints and Wheels.
#@F. Boyer,S. Ali
#t2011
#cIEEE Transactions on Robotics
#index3086436
#% 
#!
  
#*Efficient Unbiased Tracking of Multiple Dynamic Obstacles Under Large Viewpoint Changes.
#@Isaac Miller,Mark Campbell,Dan Huttenlocher
#t2011
#cIEEE Transactions on Robotics
#index3086425
#% 
#!
  
#*Human-Centered Robot Navigation - Towards a Harmoniously Human-Robot Coexisting Environment.
#@Chi-Pang Lam,Chen-Tun Chou,Kuo-Hung Chiang,Li-Chen Fu
#t2011
#cIEEE Transactions on Robotics
#index3086421
#% 
#!
  
#*Distance-Based and Orientation-Based Visual Servoing From Three Points.
#@Romeo Tatsambon Fomena,Omar Tahri,François Chaumette
#t2011
#cIEEE Transactions on Robotics
#index3086441
#% 
#!
  
#*A Method to Formulate a Dimensionally Homogeneous Jacobian of Parallel Manipulators.
#@H. Liu,T. Huang,Derek G. Chetwynd
#t2011
#cIEEE Transactions on Robotics
#index3086420
#% 
#!
  
#*Two-Finger Caging of Nonconvex Polytopes.
#@Peam Pipattanasomporn,Attawith Sudsang
#t2011
#cIEEE Transactions on Robotics
#index3086437
#% 
#!
  
#*A New Aerodynamic-Traction Principle for Handling Products on an Air Cushion.
#@G. J. Laurent,A. Delettre,N. Le Fort-Piat
#t2011
#cIEEE Transactions on Robotics
#index3086440
#% 
#!
  
#*Sense of Touch in Robots With Self-Organizing Maps.
#@Magnus Johnsson,Christian Balkenius
#t2011
#cIEEE Transactions on Robotics
#index3146486
#% 
#!
  
#*Energy-Efficient Variable Stiffness Actuators.
#@Ludo C. Visser,Raffaella Carloni,Stefano Stramigioli
#t2011
#cIEEE Transactions on Robotics
#index3146470
#% 
#!
  
#*An Experimental Study on the Dynamics of a 3-RRR Flexible Parallel Robot.
#@Yue-Qing Yu,Zhao-cai Du,Jian-Xin Yang,Yuan Li
#t2011
#cIEEE Transactions on Robotics
#index3146498
#% 
#!
  
#*Majority Voting: Material Classification by Tactile Sensing Using Surface Texture.
#@Nawid Jamali,Claude Sammut
#t2011
#cIEEE Transactions on Robotics
#index3146446
#% 
#!
  
#*Learning Stable Nonlinear Dynamical Systems With Gaussian Mixture Models.
#@Seyed Mohammad Khansari-Zadeh,Aude Billard
#t2011
#cIEEE Transactions on Robotics
#index3146479
#% 
#!
  
#*Human-Like Adaptation of Force and Impedance in Stable and Unstable Interactions.
#@Chenguang Yang,Ganesh Gowrishankar,Sami Haddadin,Sven Parusel,Alin Albu-Schäffer,Etienne Burdet
#t2011
#cIEEE Transactions on Robotics
#index3146484
#% 
#!
  
#*Tactile-Data Classification of Contact Materials Using Computational Intelligence.
#@Sergio Decherchi,Paolo Gastaldo,Ravinder S. Dahiya,Maurizio Valle,Rodolfo Zunino
#t2011
#cIEEE Transactions on Robotics
#index3146497
#% 
#!
  
#*Mutual Information-Based Visual Servoing.
#@Amaury Dame,Éric Marchand
#t2011
#cIEEE Transactions on Robotics
#index3146457
#% 
#!
  
#*On the Stability of Closed-Loop Inverse Kinematics Algorithms for Redundant Robots.
#@Pietro Falco,Ciro Natale
#t2011
#cIEEE Transactions on Robotics
#index3146476
#% 
#!
  
#*Tactile-Object Recognition From Appearance Information.
#@Zachary A. Pezzementi,Erion Plaku,Caitlin Reyda,Gregory D. Hager
#t2011
#cIEEE Transactions on Robotics
#index3146504
#% 
#!
  
#*Photometric Visual Servoing.
#@Christophe Collewet,Éric Marchand
#t2011
#cIEEE Transactions on Robotics
#index3146469
#% 
#!
  
#*Analysis of Bounded Cable Tensions in Cable-Actuated Parallel Manipulators.
#@Mahir Hassan,Amir Khajepour
#t2011
#cIEEE Transactions on Robotics
#index3146447
#% 
#!
  
#*Path Following for Unicycle Robots With an Arbitrary Path Curvature.
#@Angelo Morro,Antonio Sgorbissa,Renato Zaccaria
#t2011
#cIEEE Transactions on Robotics
#index3146478
#% 
#!
  
#*Parameterization and Evaluation of Robotic Orientation Workspace: A Geometric Treatment.
#@Chao Chen,Daniel Jackson
#t2011
#cIEEE Transactions on Robotics
#index3146487
#% 
#!
  
#*Rolling Indentation Probe for Tissue Abnormality Identification During Minimally Invasive Surgery.
#@Hongbin Liu,Jichun Li,Xiaojing Song,Lakmal D. Seneviratne,Kaspar Althoefer
#t2011
#cIEEE Transactions on Robotics
#index3146456
#% 
#!
  
#*Closed-Loop Planar Motion Control of a Steerable Probe With a "Programmable Bevel" Inspired by Nature.
#@Seong-Young Ko,Luca Frasson,Ferdinando Rodriguez y Baena
#t2011
#cIEEE Transactions on Robotics
#index3146468
#% 
#!
  
#*Humanoid Multimodal Tactile-Sensing Modules.
#@Philipp Mittendorfer,Gordon Cheng
#t2011
#cIEEE Transactions on Robotics
#index3146458
#% 
#!
  
#*Multirobot Tree and Graph Exploration.
#@Peter Brass,Flavio Cabrera-Mora,Andrea Gasparri,Jizhong Xiao
#t2011
#cIEEE Transactions on Robotics
#index3146451
#% 
#!
  
#*Assessing Grasp Stability Based on Learning and Haptic Data.
#@Yasemin Bekiroglu,Janne Laaksonen,Jimmy A. Jørgensen,Ville Kyrki,Danica Kragic
#t2011
#cIEEE Transactions on Robotics
#index3146496
#% 
#!
  
#*Development and Analysis of a Sliding Tactile Soft Fingertip Embedded With a Microforce/Moment Sensor.
#@Van Anh Ho,Dzung Viet Dao,Susumu Sugiyama,Shinichi Hirai
#t2011
#cIEEE Transactions on Robotics
#index3146477
#% 
#!
  
#*The Hybrid Reciprocal Velocity Obstacle.
#@Jamie Snape,Jur P. van den Berg,Stephen J. Guy,Dinesh Manocha
#t2011
#cIEEE Transactions on Robotics
#index3146467
#% 
#!
  
#*A Probabilistic Approach to Tactile Shape Reconstruction.
#@Martin Meier,Matthias Schöpfer,Robert Haschke,Helge Ritter
#t2011
#cIEEE Transactions on Robotics
#index3146502
#% 
#!
  
#*Tactile Sensing for Mobile Manipulation.
#@Sachin Chitta,Jürgen Sturm,Matthew Piccoli,Wolfram Burgard
#t2011
#cIEEE Transactions on Robotics
#index3146450
#% 
#!
  
#*Distributed Roadmaps for Robot Navigation in Sensor Networks.
#@Zhenwang Yao,Kamal Gupta
#t2011
#cIEEE Transactions on Robotics
#index3146474
#% 
#!
  
#*Improved Image Reconstruction for an EIT-Based Sensitive Skin With Multiple Internal Electrodes.
#@David Silvera Tawil,David C. Rye,Mari Velonaki
#t2011
#cIEEE Transactions on Robotics
#index3146495
#% 
#!
  
#*Vibrotactile Recognition and Categorization of Surfaces by a Humanoid Robot.
#@Jivko Sinapov,Vladimir Sukhoy,Ritika Sahai,Alexander Stoytchev
#t2011
#cIEEE Transactions on Robotics
#index3146494
#% 
#!
  
#*A Kinematic Control Framework for Single-Slave Asymmetric Teleoperation Systems.
#@Pawel Malysz,Shahin Sirouspour
#t2011
#cIEEE Transactions on Robotics
#index3146488
#% 
#!
  
#*Learning Dynamic Tactile Sensing With Robust Vision-Based Training.
#@Oliver Kroemer,Christoph H. Lampert,Jan Peters
#t2011
#cIEEE Transactions on Robotics
#index3146459
#% 
#!
  
#*Online Trajectory Generation: Straight-Line Trajectories.
#@Torsten Kröger
#t2011
#cIEEE Transactions on Robotics
#index3146481
#% 
#!
  
#*Bilateral Telemanipulation With Time Delays: A Two-Layer Approach Combining Passivity and Transparency.
#@Michel Franken,Stefano Stramigioli,Sarthak Misra,Cristian Secchi,Alessandro Macchelli
#t2011
#cIEEE Transactions on Robotics
#index3146480
#% 
#!
  
#*Methods and Technologies for the Implementation of Large-Scale Robot Tactile Sensors.
#@Alexander Schmitz,Perla Maiolino,Marco Maggiali,Lorenzo Natale,Giorgio Cannata,Giorgio Metta
#t2011
#cIEEE Transactions on Robotics
#index3146489
#% 
#!
  
#*Translational and Rotational Damping of Flapping Flight and Its Dynamics and Stability at Hovering.
#@Bo Cheng,Xinyan Deng
#t2011
#cIEEE Transactions on Robotics
#index3146466
#% 
#!
  
#*Probabilistic Collision Checking With Chance Constraints.
#@Noel E. Du Toit,Joel W. Burdick
#t2011
#cIEEE Transactions on Robotics
#index3146503
#% 
#!
  
#*Singularity-Invariant Families of Line-Plane 5-SunderlineP U Platforms.
#@Júlia Borràs Sol,Federico Thomas,Carme Torras
#t2011
#cIEEE Transactions on Robotics
#index3146475
#% 
#!
  
#*Range-Only SLAM With Occupancy Maps: A Set-Membership Approach.
#@Luc Jaulin
#t2011
#cIEEE Transactions on Robotics
#index3146460
#% 
#!
  
#*Solvability-Unconcerned Inverse Kinematics by the Levenberg-Marquardt Method.
#@Tomomichi Sugihara
#t2011
#cIEEE Transactions on Robotics
#index3146453
#% 
#!
  
#*Two-Flexible-Fingers Gripper Force Feedback Control System for Its Application as End Effector on a 6-DOF Manipulator.
#@Jonathan Becedas,Ismael Payo,Vicente Feliú Batlle
#t2011
#cIEEE Transactions on Robotics
#index3146500
#% 
#!
  
#*Programmable Assembly With Universally Foldable Strings (Moteins).
#@Kenneth C. Cheung,Erik D. Demaine,Jonathan Bachrach,Saul Griffith
#t2011
#cIEEE Transactions on Robotics
#index3146465
#% 
#!
  
#*Modeling and Control of a Continuum Style Microrobot for Endovascular Surgery.
#@Yan Bailly,Yacine Amirat,Georges Fried
#t2011
#cIEEE Transactions on Robotics
#index3146493
#% 
#!
  
#*Discrete Geometric Optimal Control on Lie Groups.
#@Marin Kobilarov,Jerrold E. Marsden
#t2011
#cIEEE Transactions on Robotics
#index3146452
#% 
#!
  
#*Experimental Investigation of Obstacle-Aided Locomotion With a Snake Robot.
#@Pål Liljebäck,Kristin Ytterstad Pettersen,Øyvind Stavdahl,Jan Tommy Gravdahl
#t2011
#cIEEE Transactions on Robotics
#index3146472
#% 
#!
  
#*Multirobot Active Target Tracking With Combinations of Relative Observations.
#@Ke X. Zhou,Stergios I. Roumeliotis
#t2011
#cIEEE Transactions on Robotics
#index3146483
#% 
#!
  
#*A Novel Magnetic Actuation System for Miniature Swimming Robots.
#@Pietro Valdastri,Edoardo Sinibaldi,Sebastiano Caccavaro,Giuseppe Tortora,Arianna Menciassi,Paolo Dario
#t2011
#cIEEE Transactions on Robotics
#index3146501
#% 
#!
  
#*Flocking for Multiple Elliptical Agents With Limited Communication Ranges.
#@Khac Duc Do
#t2011
#cIEEE Transactions on Robotics
#index3146464
#% 
#!
  
#*Haptic Interactions Using Virtual Manipulator Coupling With Applications to Underactuated Systems.
#@Greg R. Luecke
#t2011
#cIEEE Transactions on Robotics
#index3146490
#% 
#!
  
#*Global Localization of Objects via Touch.
#@Anna Petrovskaya,Oussama Khatib
#t2011
#cIEEE Transactions on Robotics
#index3146461
#% 
#!
  
#*Minimum-Time Trajectory for Three-Wheeled Omnidirectional Mobile Robots Following a Bounded-Curvature Path With a Referenced Heading Profile.
#@Ki Bum Kim,Byung Kook Kim
#t2011
#cIEEE Transactions on Robotics
#index3146492
#% 
#!
  
#*Active Stabilization for Robotized Beating Heart Surgery.
#@Wael Bachta,Pierre Renaud,Edouard Laroche,Antonello Forgione,Jacques Gangloff
#t2011
#cIEEE Transactions on Robotics
#index3146482
#% 
#!
  
#*Kinematic Control of Redundant Manipulators: Generalizing the Task-Priority Framework to Inequality Task.
#@Oussama Kanoun,Florent Lamiraux,Pierre-Brice Wieber
#t2011
#cIEEE Transactions on Robotics
#index3146473
#% 
#!
  
#*The Spatial Spectrum of Tangential Skin Displacement Can Encode Tactual Texture.
#@Michael Wiertlewski,José Lozada,Vincent Hayward
#t2011
#cIEEE Transactions on Robotics
#index3146491
#% 
#!
  
#*Guest Editorial Special Issue on Robotic Sense of Touch.
#@Ravinder S. Dahiya,Giorgio Metta,Giorgio Cannata,Maurizio Valle
#t2011
#cIEEE Transactions on Robotics
#index3146455
#% 
#!
  
#*Modeling and Evaluation of Low-Cost Force Sensors.
#@Cyrille Lebossé,Pierre Renaud,Bernard Bayle,Michel de Mathelin
#t2011
#cIEEE Transactions on Robotics
#index3146448
#% 
#!
  
#*Using Bayesian Filtering to Localize Flexible Materials During Manipulation.
#@Robert Platt,Frank Permenter,Joel Pfeiffer
#t2011
#cIEEE Transactions on Robotics
#index3146462
#% 
#!
  
#*A Simple Tactile Probe for Surface Identification by Mobile Robots.
#@Philippe Giguère,Gregory Dudek
#t2011
#cIEEE Transactions on Robotics
#index3146454
#% 
#!
  
#*Engineering Design of Fluid-Filled Soft Covers for Robotic Contact Interfaces: Guidelines, Nonlinear Modeling, and Experimental Validation.
#@Giovanni Berselli,Marco Piccinini,Gianluca Palli,Gabriele Vassura
#t2011
#cIEEE Transactions on Robotics
#index3146471
#% 
#!
  
#*Keeping Multiple Moving Targets in the Field of View of a Mobile Camera.
#@Nicholas R. Gans,Guoqiang Hu,K. Nagarajan,Warren E. Dixon
#t2011
#cIEEE Transactions on Robotics
#index3146485
#% 
#!
  
#*Roughness Encoding for Discrimination of Surfaces in Artificial Active-Touch.
#@Calogero M. Oddo,Marco Controzzi,Lucia Beccai,Christian Cipriani,Maria Chiara Carrozza
#t2011
#cIEEE Transactions on Robotics
#index3146463
#% 
#!
  
#*A Nonlinear Attitude Observer Based on Active Vision and Inertial Measurements.
#@Sérgio Bras,Rita Cunha,José Fernandes Vasconcelos,Carlos Silvestre,Paulo Oliveira
#t2011
#cIEEE Transactions on Robotics
#index3146449
#% 
#!
  
#*A Vacuum-Based Bonding Mechanism for Modular Robotics.
#@Ricardo Franco Mendoza Garcia,Jonathan D. Hiller,Kasper Støy,Hod Lipson
#t2011
#cIEEE Transactions on Robotics
#index3146499
#% 
#!
  
#*Motion-Estimation-Based Visual Servoing of Nonholonomic Mobile Robots.
#@Xuebo Zhang,Yongchun Fang,Xi Liu
#t2011
#cIEEE Transactions on Robotics
#index3260436
#% 
#!
  
#*Position Control of Motion Compensation Cardiac Catheters.
#@Samuel B. Kesner,Robert D. Howe
#t2011
#cIEEE Transactions on Robotics
#index3260435
#% 
#!
  
#*Mobile Sensor Network Navigation Using Gaussian Processes With Truncated Observations.
#@Yunfei Xu,Jongeun Choi,Songhwai Oh
#t2011
#cIEEE Transactions on Robotics
#index3260434
#% 
#!
  
#*Statics and Dynamics of Continuum Robots With General Tendon Routing and External Loading.
#@D. Caleb Rucker,Robert J. Webster III
#t2011
#cIEEE Transactions on Robotics
#index3260439
#% 
#!
  
#*An Analytic-Iterative Redundancy Resolution Scheme for Cable-Driven Redundant Parallel Manipulators.
#@Hamid D. Taghirad,Yousef Babazadeh Bedoustani
#t2011
#cIEEE Transactions on Robotics
#index3260438
#% 
#!
  
#*Collision Cones for Quadric Surfaces.
#@Animesh Chakravarthy,Debasish Ghose
#t2011
#cIEEE Transactions on Robotics
#index3260440
#% 
#!
  
#*Human-Inspired Robotic Grasp Control With Tactile Sensing.
#@Joseph M. Romano,Kaijen Hsiao,Günter Niemeyer,Sachin Chitta,Katherine J. Kuchenbecker
#t2011
#cIEEE Transactions on Robotics
#index3260441
#% 
#!
  
#*Task-Oriented Kinematic Design of a Symmetric Assistive Climbing Robot.
#@Alberto Jardón Huete,Martin F. Stoelen,Fabio Bonsignorio,Carlos Balaguer
#t2011
#cIEEE Transactions on Robotics
#index3260431
#% 
#!
  
#*Climbing Strategy for a Flexible Tree Climbing Robot - Treebot.
#@Tin Lun Lam,Yangsheng Xu
#t2011
#cIEEE Transactions on Robotics
#index3260442
#% 
#!
  
#*Chance-Constrained Optimal Path Planning With Obstacles.
#@Lars Blackmore,Masahiro Ono,Brian C. Williams
#t2011
#cIEEE Transactions on Robotics
#index3260430
#% 
#!
  
#*Online Trajectory Scaling for Manipulators Subject to High-Order Kinematic and Dynamic Constraints.
#@Corrado Guarino Lo Bianco,Oscar Gerelli
#t2011
#cIEEE Transactions on Robotics
#index3260433
#% 
#!
  
#*Planning and Fast Replanning Safe Motions for Humanoid Robots.
#@Sebastien Lengagne,Nacim Ramdani,Philippe Fraisse
#t2011
#cIEEE Transactions on Robotics
#index3260443
#% 
#!
  
#*Stable Precision Grasps by Underactuated Grippers.
#@Gert A. Kragten,Mathieu Baril,Clément M. Gosselin,Just L. Herder
#t2011
#cIEEE Transactions on Robotics
#index3260437
#% 
#!
  
#*Sequential Composition for Navigating a Nonholonomic Cart in the Presence of Obstacles.
#@Vinutha Kallem,Adam T. Komoroski,Vijay Kumar
#t2011
#cIEEE Transactions on Robotics
#index3260432
#% 
#!
  
#*Landing a VTOL Unmanned Aerial Vehicle on a Moving Platform Using Optical Flow.
#@Bruno Hérissé,Tarek Hamel,Robert E. Mahony,François-Xavier Russotto
#t2012
#cIEEE Transactions on Robotics
#index3317541
#% 
#!
  
#*Analysis of Search Decision Making Using Probabilistic Search Strategies.
#@Timothy H. Chung,Joel W. Burdick
#t2012
#cIEEE Transactions on Robotics
#index3317546
#% 
#!
  
#*Vision and IMU Data Fusion: Closed-Form Solutions for Attitude, Speed, Absolute Scale, and Bias Determination.
#@Agostino Martinelli
#t2012
#cIEEE Transactions on Robotics
#index3317527
#% 
#!
  
#*Visual-Inertial-Aided Navigation for High-Dynamic Motion in Built Environments Without Initial Conditions.
#@Todd Lupton,Salah Sukkarieh
#t2012
#cIEEE Transactions on Robotics
#index3317528
#% 
#!
  
#*Dual-Fingered Stable Grasping Control for an Optimal Force Angle.
#@Seung Kwan Song,Jin Bae Park,Yoon Ho Choi
#t2012
#cIEEE Transactions on Robotics
#index3317548
#% 
#!
  
#*Activity-Based Estimation of Human Trajectories.
#@Slawomir Grzonka,Andreas Karwath,Frederic Dijoux,Wolfram Burgard
#t2012
#cIEEE Transactions on Robotics
#index3317533
#% 
#!
  
#*Design of Statically Balanced Planar Articulated Manipulators With Spring Suspension.
#@Po-Yang Lin,Win-Bin Shieh,Dar-Zen Chen
#t2012
#cIEEE Transactions on Robotics
#index3317540
#% 
#!
  
#*Micron: An Actively Stabilized Handheld Tool for Microsurgery.
#@Robert A. MacLachlan,Brian C. Becker,Jaime Cuevas Tabarés,Gregg Podnar,Louis A. Lobes Jr.,Cameron N. Riviere
#t2012
#cIEEE Transactions on Robotics
#index3317531
#% 
#!
  
#*Formal Approach to the Deployment of Distributed Robotic Teams.
#@Yushan Chen,Xu Chu Ding,Alin Stefanescu,Calin Belta
#t2012
#cIEEE Transactions on Robotics
#index3317544
#% 
#!
  
#*Tracking Control of Multiple-Wheeled Mobile Robots With Limited Information of a Desired Trajectory.
#@Wenjie Dong
#t2012
#cIEEE Transactions on Robotics
#index3317534
#% 
#!
  
#*Controlled Synchronization of Heterogeneous Robotic Manipulators in the Task Space.
#@Yen-Chen Liu,Nikhil Chopra
#t2012
#cIEEE Transactions on Robotics
#index3317545
#% 
#!
  
#*A Sampling-Based Tree Planner for Systems With Complex Dynamics.
#@Ioan Alexandru Sucan,Lydia E. Kavraki
#t2012
#cIEEE Transactions on Robotics
#index3317532
#% 
#!
  
#*Robot Motion Planning in Dynamic, Uncertain Environments.
#@Noel E. Du Toit,Joel W. Burdick
#t2012
#cIEEE Transactions on Robotics
#index3317539
#% 
#!
  
#*A Fully Autonomous Indoor Quadrotor.
#@Slawomir Grzonka,Giorgio Grisetti,Wolfram Burgard
#t2012
#cIEEE Transactions on Robotics
#index3317535
#% 
#!
  
#*Control of Multiple Heterogeneous Magnetic Microrobots in Two Dimensions on Nonspecialized Surfaces.
#@Eric D. Diller,Steven Floyd,Chytra Pawashe,Metin Sitti
#t2012
#cIEEE Transactions on Robotics
#index3317542
#% 
#!
  
#*Immobilizing 2-D Serial Chains in Form-Closure Grasps.
#@Elon Rimon,A. Frank van der Stappen
#t2012
#cIEEE Transactions on Robotics
#index3317538
#% 
#!
  
#*On Optimizing Autonomous Pipeline Inspection.
#@Xin Li,Wuyi Yu,Xiao Lin,S. S. Iyengar
#t2012
#cIEEE Transactions on Robotics
#index3317529
#% 
#!
  
#*Variable Stiffness Actuators: A Port-Based Power-Flow Analysis.
#@Raffaella Carloni,Ludo C. Visser,Stefano Stramigioli
#t2012
#cIEEE Transactions on Robotics
#index3317536
#% 
#!
  
#*Joining Movement Sequences: Modified Dynamic Movement Primitives for Robotics Applications Exemplified on Handwriting.
#@Tomas Kulvicius,KeJun Ning,Minija Tamosiunaite,Florentin Wörgötter
#t2012
#cIEEE Transactions on Robotics
#index3317530
#% 
#!
  
#*On the Force-Closure Analysis of n-DOF Cable-Driven Open Chains Based on Reciprocal Screw Theory.
#@Shabbir Kurbanhusen Mustafa,Sunil Kumar Agrawal
#t2012
#cIEEE Transactions on Robotics
#index3317543
#% 
#!
  
#*Design and Rolling Locomotion of a Magnetically Actuated Soft Capsule Endoscope.
#@Sehyuk Yim,Metin Sitti
#t2012
#cIEEE Transactions on Robotics
#index3317547
#% 
#!
  
#*Toward a Meso-Scale SMA-Actuated MRI-Compatible Neurosurgical Robot.
#@Mingyen Ho,Alan B. McMillan,J. Marc Simard,Rao P. Gullapalli,Jaydev P. Desai
#t2012
#cIEEE Transactions on Robotics
#index3317549
#% 
#!
  
#*A Robotic Cadaveric Gait Simulator With Fuzzy Logic Vertical Ground Reaction Force Control.
#@Patrick M. Aubin,Eric Whittaker,William R. Ledoux
#t2012
#cIEEE Transactions on Robotics
#index3317537
#% 
#!
  
#*Control of Yaw and Pitch Maneuvers of a Multilink Dolphin Robot.
#@Junzhi Yu,Zongshuai Su,Ming Wang,Min Tan,Jianwei Zhang
#t2012
#cIEEE Transactions on Robotics
#index3377099
#% 
#!
  
#*Design and Motion Planning of a Two-Module Collaborative Indoor Pipeline Inspection Robot.
#@Young Sik Kwon,Byung-Ju Yi
#t2012
#cIEEE Transactions on Robotics
#index3377127
#% 
#!
  
#*On Cooperative Patrolling: Optimal Trajectories, Complexity Analysis, and Approximation Algorithms.
#@Fabio Pasqualetti,Antonio Franchi,Francesco Bullo
#t2012
#cIEEE Transactions on Robotics
#index3377108
#% 
#!
  
#*A Comparative Evaluation of Control Interfaces for a Robotic-Aided Endoscopic Capsule Platform.
#@Gastone Ciuti,Marco Salerno,Gioia Lucarini,Pietro Valdastri,Alberto Arezzo,Arianna Menciassi,Mario Morino,Paolo Dario
#t2012
#cIEEE Transactions on Robotics
#index3377100
#% 
#!
  
#*Real-Time Identification of Hunt-Crossley Dynamic Models of Contact Environments.
#@Amir Haddadi,Keyvan Hashtrudi-Zaad
#t2012
#cIEEE Transactions on Robotics
#index3377114
#% 
#!
  
#*A Prediction and Motion-Planning Scheme for Visually Guided Robotic Capturing of Free-Floating Tumbling Objects With Uncertain Dynamics.
#@Farhad Aghili
#t2012
#cIEEE Transactions on Robotics
#index3377121
#% 
#!
  
#*A Projection Method for the Elimination of Contradicting Decentralized Control Forces in Redundantly Actuated PKM.
#@Timo Hufnagel,Andreas Müller
#t2012
#cIEEE Transactions on Robotics
#index3377092
#% 
#!
  
#*Fast Humanoid Robot Collision-Free Footstep Planning Using Swept Volume Approximations.
#@Nicolas Perrin,Olivier Stasse,Leo Baudouin,Florent Lamiraux,Eiichi Yoshida
#t2012
#cIEEE Transactions on Robotics
#index3377107
#% 
#!
  
#*Enhanced Targeting in Breast Tissue Using a Robotic Tissue Preloading-Based Needle Insertion System.
#@Yo Kobayashi,Makiko Suzuki,Atsushi Kato,Maya Hatano,Kozo Konishi,Makoto Hashizume,Masakatsu G. Fujie
#t2012
#cIEEE Transactions on Robotics
#index3377120
#% 
#!
  
#*Macrocontinuous Dynamics for Hyperredundant Robots: Application to Kinematic Locomotion Bioinspired by Elongated Body Animals.
#@Frédéric Boyer,Shaukat Ali,Mathieu Porez
#t2012
#cIEEE Transactions on Robotics
#index3377093
#% 
#!
  
#*Persistent Robotic Tasks: Monitoring and Sweeping in Changing Environments.
#@Stephen L. Smith,Mac Schwager,Daniela Rus
#t2012
#cIEEE Transactions on Robotics
#index3377111
#% 
#!
  
#*Hierarchical Motion Planning With Dynamical Feasibility Guarantees for Mobile Robotic Vehicles.
#@Raghvendra V. Cowlagi,Panagiotis Tsiotras
#t2012
#cIEEE Transactions on Robotics
#index3377101
#% 
#!
  
#*New Flexure Parallel-Kinematic Micropositioning System With Large Workspace.
#@Qingsong Xu
#t2012
#cIEEE Transactions on Robotics
#index3377109
#% 
#!
  
#*A Varied Weights Method for the Kinematic Control of Redundant Manipulators With Multiple Constraints.
#@Ji Xiang,Cong-wei Zhong,Wei Wei
#t2012
#cIEEE Transactions on Robotics
#index3377112
#% 
#!
  
#*The Appearance Variation Cue for Obstacle Avoidance.
#@G. C. H. E. de Croon,E. de Weerdt,C. De Wagter,B. D. W. Remes,R. Ruijsink
#t2012
#cIEEE Transactions on Robotics
#index3377119
#% 
#!
  
#*Modeling and Control of a Snake-Like Robot Using the Screw-Drive Mechanism.
#@Hiroaki Fukushima,Shogo Satomura,Toru Kawai,Motoyasu Tanaka,Tetsushi Kamegawa,Fumitoshi Matsuno
#t2012
#cIEEE Transactions on Robotics
#index3377094
#% 
#!
  
#*Reactive Planning and Control of Planar Spring-Mass Running on Rough Terrain.
#@Ömür Arslan,Uluc Saranli
#t2012
#cIEEE Transactions on Robotics
#index3377123
#% 
#!
  
#*A Positive Pressure Universal Gripper Based on the Jamming of Granular Material.
#@John R. Amend,Eric Brown,Nicholas Rodenberg,Heinrich M. Jaeger,Hod Lipson
#t2012
#cIEEE Transactions on Robotics
#index3377095
#% 
#!
  
#*Two-Dimensional Autonomous Microparticle Manipulation Strategies for Magnetic Microrobots in Fluidic Environments.
#@Chytra Pawashe,Steven Floyd,Eric D. Diller,Metin Sitti
#t2012
#cIEEE Transactions on Robotics
#index3377118
#% 
#!
  
#*Kinematics-Based Detection and Localization of Contacts Along Multisegment Continuum Robots.
#@Andrea Bajo,Nabil Simaan
#t2012
#cIEEE Transactions on Robotics
#index3377102
#% 
#!
  
#*Discrete Partitioning and Coverage Control for Gossiping Robots.
#@Joseph W. Durham,Ruggero Carli,Paolo Frasca,Francesco Bullo
#t2012
#cIEEE Transactions on Robotics
#index3377129
#% 
#!
  
#*Connecting a Human Limb to an Exoskeleton.
#@Nathanaël Jarrassé,Guillaume Morel
#t2012
#cIEEE Transactions on Robotics
#index3377110
#% 
#!
  
#*Graph-Based Observability Analysis of Bearing-Only Cooperative Localization.
#@Rajnikant Sharma,Randy W. Beard,Clark N. Taylor,Stephen Quebe
#t2012
#cIEEE Transactions on Robotics
#index3377124
#% 
#!
  
#*On Computing Reliable Optimal Grasping Forces.
#@Yu Zheng,Ming C. Lin,Dinesh Manocha
#t2012
#cIEEE Transactions on Robotics
#index3377096
#% 
#!
  
#*Robust Take-Off for a Quadrotor Vehicle.
#@David Cabecinhas,Roberto Naldi,Lorenzo Marconi,Carlos Silvestre,Rita Cunha
#t2012
#cIEEE Transactions on Robotics
#index3377117
#% 
#!
  
#*Assembly Mode Changing in the Cuspidal Analytic 3-R $\underline{\hbox{P}}$R.
#@Mónica Urizar,Víctor Petuya,Oscar Altuzarra,Alfonso Hernández
#t2012
#cIEEE Transactions on Robotics
#index3377104
#% 
#!
  
#*Approximate Steering of a Unicycle Under Bounded Model Perturbation Using Ensemble Control.
#@Aaron Becker,Timothy Bretl
#t2012
#cIEEE Transactions on Robotics
#index3377130
#% 
#!
  
#*Control of Robotic Manipulators Under Input/Output Communication Delays: Theory and Experiments.
#@Yen-Chen Liu,Nikhil Chopra
#t2012
#cIEEE Transactions on Robotics
#index3377097
#% 
#!
  
#*Automatic Design and Manufacture of Soft Robots.
#@Jonathan D. Hiller,Hod Lipson
#t2012
#cIEEE Transactions on Robotics
#index3377103
#% 
#!
  
#*Vector Field SLAM - Localization by Learning the Spatial Variation of Continuous Signals.
#@Jens-Steffen Gutmann,Ethan Eade,Philip Fong,Mario E. Munich
#t2012
#cIEEE Transactions on Robotics
#index3377125
#% 
#!
  
#*Modeling, Identification, and Control of Tendon-Based Actuation Systems.
#@Gianluca Palli,Gianni Borghesan,Claudio Melchiorri
#t2012
#cIEEE Transactions on Robotics
#index3377131
#% 
#!
  
#*Simultaneous Localization of Multiple Unknown and Transient Radio Sources Using a Mobile Robot.
#@Dezhen Song,Chang-Young Kim,Jingang Yi
#t2012
#cIEEE Transactions on Robotics
#index3377115
#% 
#!
  
#*Temporal Logic Motion Planning and Control With Probabilistic Satisfaction Guarantees.
#@Morteza Lahijanian,Sean B. Andersson,Calin Belta
#t2012
#cIEEE Transactions on Robotics
#index3377106
#% 
#!
  
#*Shadow Information Spaces: Combinatorial Filters for Tracking Targets.
#@Jingjin Yu,Steven M. LaValle
#t2012
#cIEEE Transactions on Robotics
#index3377126
#% 
#!
  
#*sRD-SIFT: Keypoint Detection and Matching in Images With Radial Distortion.
#@Miguel Lourenço,João Pedro Barreto,Francisco Vasconcelos
#t2012
#cIEEE Transactions on Robotics
#index3377098
#% 
#!
  
#*Dynamic Nonprehensile Manipulation for Rotating a Thin Deformable Object: An Analogy to Bipedal Gaits.
#@Ixchel Georgina Ramirez-Alpizar,Mitsuru Higashimori,Makoto Kaneko,Chia-Hung Dylan Tsai,Imin Kao
#t2012
#cIEEE Transactions on Robotics
#index3377128
#% 
#!
  
#*Minimum-Time Optimal Control of Many Robots that Move in the Same Direction at Different Speeds.
#@Timothy Bretl
#t2012
#cIEEE Transactions on Robotics
#index3377116
#% 
#!
  
#*A General User-Oriented Framework for Holonomic Redundancy Resolution in Robotic Manipulators Using Task Augmentation.
#@Andrea Maria Zanchettin,Paolo Rocco
#t2012
#cIEEE Transactions on Robotics
#index3377105
#% 
#!
  
#*On Coordinate-Free Rotation Decomposition: Euler Angles About Arbitrary Axes.
#@Giulia Piovan,Francesco Bullo
#t2012
#cIEEE Transactions on Robotics
#index3377113
#% 
#!
  
#*Model for a Sensor Inspired by Electric Fish.
#@Frédéric Boyer,Pol Bernard Gossiaux,Brahim Jawad,Vincent Lebastard,Mathieu Porez
#t2012
#cIEEE Transactions on Robotics
#index3377122
#% 
#!
  
#*Physical Human Interactive Guidance: Identifying Grasping Principles From Human-Planned Grasps.
#@Ravi Balasubramanian,Ling Xu,Peter D. Brook,Joshua R. Smith,Yoky Matsuoka
#t2012
#cIEEE Transactions on Robotics
#index3465591
#% 
#!
  
#*Automated Multiprobe Microassembly Using Vision Feedback.
#@John D. Wason,John T. Wen,Jason Gorman,Nicholas G. Dagalakis
#t2012
#cIEEE Transactions on Robotics
#index3465619
#% 
#!
  
#*The Smooth Curvature Model: An Efficient Representation of Euler-Bernoulli Flexures as Robot Joints.
#@Lael Odhner,Aaron M. Dollar
#t2012
#cIEEE Transactions on Robotics
#index3465610
#% 
#!
  
#*Asynchronous Event-Based Visual Shape Tracking for Stable Haptic Feedback in Microrobotics.
#@Zhenjiang Ni,Aude Bolopion,Joël Agnus,Ryad Benosman,Stéphane Régnier
#t2012
#cIEEE Transactions on Robotics
#index3465599
#% 
#!
  
#*Bilateral Teleoperation of Groups of Mobile Robots With Time-Varying Topology.
#@Antonio Franchi,Cristian Secchi,Hyoung Il Son,Heinrich H. Bülthoff,Paolo Robuffo Giordano
#t2012
#cIEEE Transactions on Robotics
#index3465611
#% 
#!
  
#*Design and Evaluation of 2-DOF Compliant Forceps With Force-Sensing Capability for Minimally Invasive Robot Surgery.
#@Man Bok Hong,Yung-Ho Jo
#t2012
#cIEEE Transactions on Robotics
#index3465598
#% 
#!
  
#*Coherent Pattern Prediction in Swarms of Delay-Coupled Agents.
#@Luis Mier-y-Teran-Romero,Eric Forgoston,Ira B. Schwartz
#t2012
#cIEEE Transactions on Robotics
#index3465604
#% 
#!
  
#*Shape-Programmable Soft Capsule Robots for Semi-Implantable Drug Delivery.
#@Sehyuk Yim,Metin Sitti
#t2012
#cIEEE Transactions on Robotics
#index3465605
#% 
#!
  
#*A Novel Synthesis of Computational Approaches Enables Optimization of Grasp Quality of Tendon-Driven Hands.
#@Joshua M. Inouye,Jason J. Kutch,Francisco J. Valero Cuevas
#t2012
#cIEEE Transactions on Robotics
#index3465618
#% 
#!
  
#*Design and Control of a Variable Stiffness Actuator Based on Adjustable Moment Arm.
#@Byeong-Sang Kim,Jae-Bok Song
#t2012
#cIEEE Transactions on Robotics
#index3465592
#% 
#!
  
#*Cooperative Patrolling via Weighted Tours: Performance Analysis and Distributed Algorithms.
#@Fabio Pasqualetti,Joseph W. Durham,Francesco Bullo
#t2012
#cIEEE Transactions on Robotics
#index3465589
#% 
#!
  
#*Zebedee: Design of a Spring-Mounted 3-D Range Sensor with Application to Mobile Mapping.
#@Michael Bosse,Robert Zlot,Paul Flick
#t2012
#cIEEE Transactions on Robotics
#index3465597
#% 
#!
  
#*Lagrangian Modeling of the Magnetization and the Magnetic Torque on Assembled Soft-Magnetic MEMS Devices for Fast Computation and Analysis.
#@Zoltán Nagy,Bradley J. Nelson
#t2012
#cIEEE Transactions on Robotics
#index3465615
#% 
#!
  
#*A Human-Aware Manipulation Planner.
#@Emrah Akin Sisbot,Rachid Alami
#t2012
#cIEEE Transactions on Robotics
#index3465624
#% 
#!
  
#*Stiffness Matrix of Manipulators With Passive Joints: Computational Aspects.
#@Alexandr Klimchik,Anatol Pashkevich,Stéphane Caro,Damien Chablat
#t2012
#cIEEE Transactions on Robotics
#index3465606
#% 
#!
  
#*Multirobot Coordination With Periodic Connectivity: Theory and Experiments.
#@Geoffrey A. Hollinger,Sanjiv Singh
#t2012
#cIEEE Transactions on Robotics
#index3465626
#% 
#!
  
#*Visually Servoing Magnetic Intraocular Microdevices.
#@Christos Bergeles,Bradley Kratochvil,Bradley J. Nelson
#t2012
#cIEEE Transactions on Robotics
#index3465590
#% 
#!
  
#*GyroLock: Stabilizing the Heart With Control Moment Gyroscope (CMG) - From Concept to First In Vivo Assessments.
#@Julien Gagne,Olivier Piccin,Edouard Laroche,Michele Diana,Jacques Gangloff
#t2012
#cIEEE Transactions on Robotics
#index3465614
#% 
#!
  
#*Modeling the Motion of Microrobots on Surfaces Using Nonsmooth Multibody Dynamics.
#@Zoltán Nagy,Remco I. Leine,Dominic R. Frutiger,Christoph Glocker,Bradley J. Nelson
#t2012
#cIEEE Transactions on Robotics
#index3465596
#% 
#!
  
#*Robotic Router Formation in Realistic Communication Environments.
#@Yuan Yan,Yasamin Mostofi
#t2012
#cIEEE Transactions on Robotics
#index3465607
#% 
#!
  
#*Robust Place Recognition With Stereo Sequences.
#@Cesar Dario Cadena Lerma,Dorian Gálvez-López,Juan D. Tardós,José Neira
#t2012
#cIEEE Transactions on Robotics
#index3465627
#% 
#!
  
#*A Crane-Based Robotic Device for Operating Inside Storage Cells.
#@Jordi Cornellà,David Puig,Vítor Sequeira
#t2012
#cIEEE Transactions on Robotics
#index3465625
#% 
#!
  
#*Interpolation Volume Calibration: A Multisensor Calibration Technique for Electromagnetic Trackers.
#@Henry Himberg,Yuichi Motai,Arthur Bradley
#t2012
#cIEEE Transactions on Robotics
#index3465587
#% 
#!
  
#*Toward Brain-Actuated Humanoid Robots: Asynchronous Direct Control Using an EEG-Based BCI.
#@Yongwook Chae,Jaeseung Jeong,Sungho Jo
#t2012
#cIEEE Transactions on Robotics
#index3465628
#% 
#!
  
#*Simulating ultrasonic sensing with the lattice gas model.
#@Phillip J. McKerrow,Shao-Min Zhu,Stephen New
#t2001
#cIEEE Transactions on Robotics
#index3465617
#% 
#!
  
#*Design of a Cable-Driven Arm Exoskeleton (CAREX) for Neural Rehabilitation.
#@Ying Mao,Sunil Kumar Agrawal
#t2012
#cIEEE Transactions on Robotics
#index3465608
#% 
#!
  
#*Flea-Inspired Catapult Mechanism for Miniature Jumping Robots.
#@Minkyun Noh,Seung-Won Kim,Sungmin An,Je-Sung Koh,Kyu-Jin Cho
#t2012
#cIEEE Transactions on Robotics
#index3465629
#% 
#!
  
#*Bags of Binary Words for Fast Place Recognition in Image Sequences.
#@Dorian Gálvez-López,Juan D. Tardós
#t2012
#cIEEE Transactions on Robotics
#index3465609
#% 
#!
  
#*Direct Visual Servoing: Vision-Based Estimation and Control Using Only Nonmetric Information.
#@Geraldo F. Silveira,Ezio Malis
#t2012
#cIEEE Transactions on Robotics
#index3465622
#% 
#!
  
#*An Alternative to the Mahalanobis Distance for Determining Optimal Correspondences in Data Association.
#@Jose-Luis Blanco,Javier González Jiménez,Juan-Antonio Fernandez-Madrigal
#t2012
#cIEEE Transactions on Robotics
#index3465588
#% 
#!
  
#*Grasp Input Optimization Taking Contact Position and Object Information Uncertainties into Consideration.
#@Papat Fungtammasan,Tetsuyou Watanabe
#t2012
#cIEEE Transactions on Robotics
#index3465623
#% 
#!
  
#*Moving Groups of Microparticles Into Array With a Robot-Tweezers Manipulation System.
#@Haoyao Chen,Dong Sun
#t2012
#cIEEE Transactions on Robotics
#index3465616
#% 
#!
  
#*Automatic Visual Bag-of-Words for Online Robot Navigation and Mapping.
#@Tudor Nicosevici,Rafael García
#t2012
#cIEEE Transactions on Robotics
#index3465621
#% 
#!
  
#*Path Connectivity of the Free Space.
#@Alberto Rodriguez,Matthew T. Mason
#t2012
#cIEEE Transactions on Robotics
#index3465594
#% 
#!
  
#*Estimation of Multivehicle Dynamics by Considering Contextual Information.
#@Gabriel Agamennoni,Juan I. Nieto,Eduardo Mario Nebot
#t2012
#cIEEE Transactions on Robotics
#index3465612
#% 
#!
  
#*Shape Memory Polymer-Based Flexure Stiffness Control in a Miniature Flapping-Wing Robot.
#@Lindsey L. Hines,Veaceslav Arabagi,Metin Sitti
#t2012
#cIEEE Transactions on Robotics
#index3465601
#% 
#!
  
#*A Dual Quaternion Solution to Attitude and Position Control for Rigid-Body Coordination.
#@Xiangke Wang,Changbin Yu,Zhiyun Lin
#t2012
#cIEEE Transactions on Robotics
#index3465603
#% 
#!
  
#*A Complete Method for Workspace Boundary Determination on General Structure Manipulators.
#@Oriol Bohigas,Montserrat Manubens,Lluís Ros
#t2012
#cIEEE Transactions on Robotics
#index3465595
#% 
#!
  
#*Enhanced Operational Space Formulation for Multiple Tasks by Using Time-Delay Estimation.
#@Pyung Hun Chang,Jae Won Jeong
#t2012
#cIEEE Transactions on Robotics
#index3465593
#% 
#!
  
#*Three-DOF Microrobotic Platform Based on Capillary Actuation.
#@Cyrille Lenders,Michaël Gauthier,Rémi Cojan,Pierre Lambert
#t2012
#cIEEE Transactions on Robotics
#index3465620
#% 
#!
  
#*Robust Cooperative Exploration With a Switching Strategy.
#@Wencen Wu,Fumin Zhang
#t2012
#cIEEE Transactions on Robotics
#index3465613
#% 
#!
  
#*An Active Uprighting Mechanism for Flying Robots.
#@Adam Klaptocz,Ludovic Daler,Adrien Briod,Jean-Christophe Zufferey,Dario Floreano
#t2012
#cIEEE Transactions on Robotics
#index3465602
#% 
#!
  
#*Distributed Consensus on Robot Networks for Dynamically Merging Feature-Based Maps.
#@Rosario Aragues,Jorge Cortes,Carlos Sagüés
#t2012
#cIEEE Transactions on Robotics
#index3465600
#% 
#!
  
#*A Grasping Force Optimization Algorithm for Multiarm Robots With Multifingered Hands.
#@Vincenzo Lippiello,Bruno Siciliano,Luigi Villani
#t2013
#cIEEE Transactions on Robotics
#index3616579
#% 
#!
  
#*Path Planning Under Kinematic Constraints by Rapidly Exploring Manifolds.
#@Leonard Jaillet,Josep M. Porta
#t2013
#cIEEE Transactions on Robotics
#index3616588
#% 
#!
  
#*Development of Tool-Type Devices for a Multifingered Haptic Interface Robot.
#@Takahiro Endo,Satoshi Tanimura,Haruhisa Kawasaki
#t2013
#cIEEE Transactions on Robotics
#index3616590
#% 
#!
  
#*Localization in Urban Environments Using a Panoramic Gist Descriptor.
#@Ana Cristina Murillo,Gautam Singh,Jana Kosecká,José Jesús Guerrero
#t2013
#cIEEE Transactions on Robotics
#index3616580
#% 
#!
  
#*Bayesian Multicategorical Soft Data Fusion for Human-Robot Collaboration.
#@Nisar R. Ahmed,Eric M. Sample,Mark E. Campbell
#t2013
#cIEEE Transactions on Robotics
#index3616587
#% 
#!
  
#*Explaining Impossible High-Level Robot Behaviors.
#@Vasumathi Raman,Hadas Kress-Gazit
#t2013
#cIEEE Transactions on Robotics
#index3616591
#% 
#!
  
#*Broadband 3-D Sonar System Using a Sparse Array for Indoor Navigation.
#@Jan Steckel,Andre Boen,Herbert Peremans
#t2013
#cIEEE Transactions on Robotics
#index3616581
#% 
#!
  
#*Self-Alignment Mechanisms for Assistive Wearable Robots: A Kinetostatic Compatibility Method.
#@Marco Cempini,Stefano Marco Maria De Rossi,Tommaso Lenzi,Nicola Vitiello,Maria Chiara Carrozza
#t2013
#cIEEE Transactions on Robotics
#index3616586
#% 
#!
  
#*Dimensionality Reduction in Controlling Articulated Snake Robot for Endoscopy Under Dynamic Active Constraints.
#@Ka-Wai Kwok,Kuen Hung Tsoi,Valentina Vitiello,James Clark,Gary C. T. Chow,Wayne Luk,Guang-Zhong Yang
#t2013
#cIEEE Transactions on Robotics
#index3616584
#% 
#!
  
#*Heart Motion Prediction Based on Adaptive Estimation Algorithms for Robotic-Assisted Beating Heart Surgery.
#@E. Erdem Tuna,Timothy J. Franke,?zkan Bebek,Akira Shiose,Kiyotaka Fukamachi,M. Cenk Cavuolu
#t2013
#cIEEE Transactions on Robotics
#index3616577
#% 
#!
  
#*Differentially Flat Design of a Closed-Chain Planar Underactuated $\hbox{2}$ -DOF System.
#@Chengkun Zhang,Jaume Franch,Sunil Kumar Agrawal
#t2013
#cIEEE Transactions on Robotics
#index3616576
#% 
#!
  
#*A Metric for Comparing the Anthropomorphic Motion Capability of Artificial Hands.
#@Thomas Feix,Javier Romero,Carl Henrik Ek,Heinz-Bodo Schmiedmayer,Danica Kragic
#t2013
#cIEEE Transactions on Robotics
#index3616585
#% 
#!
  
#*Elastic Element Integration for Improved Flapping-Wing Micro Air Vehicle Performance.
#@Ranjana Sahai,Kevin C. Galloway,Robert J. Wood
#t2013
#cIEEE Transactions on Robotics
#index3616571
#% 
#!
  
#*The Inverse Kinematics of Cooperative Transport With Multiple Aerial Robots.
#@Qimi Jiang,Vijay Kumar
#t2013
#cIEEE Transactions on Robotics
#index3616582
#% 
#!
  
#*Climbing parallel robot: a computational and experimental study of its performance around structural nodes.
#@Roque J. Saltarén,Rafael Aracil,óscar Reinoso,Maria Antonieta Scarano
#t2005
#cIEEE Transactions on Robotics
#index3616572
#% 
#!
  
#*NEUROExos: A Powered Elbow Exoskeleton for Physical Rehabilitation.
#@Nicola Vitiello,Tommaso Lenzi,Stefano Roccella,Stefano Marco Maria De Rossi,Emanuele Cattin,Francesco Giovacchini,Fabrizio Vecchi,Maria Chiara Carrozza
#t2013
#cIEEE Transactions on Robotics
#index3616594
#% 
#!
  
#*Terrain Response Estimation Using an Instrumented Rocker-Bogie Mobility System.
#@Timothy P. Setterfield,Alex Ellery
#t2013
#cIEEE Transactions on Robotics
#index3616575
#% 
#!
  
#*Mechanics and Quasi-Static Manipulation of Planar Elastic Kinematic Chains.
#@Timothy Bretl,Zoe McCarthy
#t2013
#cIEEE Transactions on Robotics
#index3616593
#% 
#!
  
#*Improving Control of Dexterous Hand Prostheses Using Adaptive Learning.
#@Tatiana Tommasi,Francesco Orabona,Claudio Castellini,Barbara Caputo
#t2013
#cIEEE Transactions on Robotics
#index3616573
#% 
#!
  
#*Semantic-Aware Real-Time Scheduling in Robotics.
#@Fulvio Mastrogiovanni,Ali Paikan,Antonio Sgorbissa
#t2013
#cIEEE Transactions on Robotics
#index3616583
#% 
#!
  
#*An Interval Approach for Stability Analysis: Application to Sailboat Robotics.
#@Luc Jaulin,Fabrice Le Bars
#t2013
#cIEEE Transactions on Robotics
#index3616592
#% 
#!
  
#*A Compact and Compliant External Pipe-Crawling Robot.
#@Puneet Singh,G. K. Ananthasuresh
#t2013
#cIEEE Transactions on Robotics
#index3616574
#% 
#!
  
#*Stability Analysis of Underconstrained Cable-Driven Parallel Robots.
#@Marco Carricato,Jean-Pierre Merlet
#t2013
#cIEEE Transactions on Robotics
#index3616578
#% 
#!
  
#*Two-Port Network Models for Compliant Rhomboidal Strain Amplifiers.
#@Joshua Schultz,Jun Ueda
#t2013
#cIEEE Transactions on Robotics
#index3616589
#% 
#!
  
#*Secure, dependable and publicly verifiable distributed data storage in unattended wireless sensor networks.
#@Wei Ren,Yi Ren,Hui Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087178
#% 
#!
  
#*Differential-algebraic cryptanalysis of reduced-round of Serpent-256.
#@Meiqin Wang,Xiaoyun Wang,Lucas Chi Kwong Hui
#t2010
#cSCIENCE CHINA Information Sciences
#index3087098
#% 
#!
  
#*Phase change memory.
#@Jing Li,Chung Lam
#t2011
#cSCIENCE CHINA Information Sciences
#index3086965
#% 
#!
  
#*A fast algorithm for color image enhancement with total variation regularization.
#@Ming Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087118
#% 
#!
  
#*Design of robust output-feedback repetitive controller for class of linear systems with uncertainties.
#@Min Wu,Lan Zhou,Jin-Hua She,Yong He
#t2010
#cSCIENCE CHINA Information Sciences
#index3087125
#% 
#!
  
#*Closed-loop drip irrigation control using a hybrid wireless sensor and actuator network.
#@Zhen Li,Ning Wang,Tiansheng Hong,Aaron Franzen,Jianian Li
#t2011
#cSCIENCE CHINA Information Sciences
#index3087000
#% 
#!
  
#*A measuring method of effects of herbs based on classification used for intelligent calculation of efficacies of prescriptions.
#@Quanquan Gao,Tingge Ren
#t2010
#cSCIENCE CHINA Information Sciences
#index3087048
#% 
#!
  
#*Fault prediction model based on evidential reasoning approach.
#@Xiao-Sheng Si,Changhua Hu,Zhijie Zhou
#t2010
#cSCIENCE CHINA Information Sciences
#index3087193
#% 
#!
  
#*Restoration method of characters on Jiagu rubbings based on Poisson distribution and fractal geometry.
#@Shaotong Gu,Gefei Feng,Xiaohu Ma,Yiming Yang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087155
#% 
#!
  
#*Basin filling algorithm for the circular packing problem with equilibrium behavioral constraints.
#@Jingfa Liu,Gang Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087175
#% 
#!
  
#*Scan chain design for shift power reduction in scan-based testing.
#@Jia Li,Yu Hu,Xiaowei Li
#t2011
#cSCIENCE CHINA Information Sciences
#index3086973
#% 
#!
  
#*Multi-robot cooperative localization based on autonomous motion state estimation and laser data interaction.
#@Yan Zhuang,Mingwei Gu,Wei Wang,Haiyang Yu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087210
#% 
#!
  
#*Gene sorting in differential evolution with cross-generation mutation.
#@Remi Tassing,Lei Guo,Jian Liu,Hongzhi Lin,Guangxi Zhu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086980
#% 
#!
  
#*MMSE relay precoding schemes based on quantization error compensation for multi-relay system.
#@Ting Li,Luxi Yang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087201
#% 
#!
  
#*A 6.2-9.5 GHz receiver for Wimedia MB-OFDM and China UWB standard.
#@Ting Gao,Feng Zhou,Wei Li,Fei Lan,Ning Li,Junyan Ren
#t2011
#cSCIENCE CHINA Information Sciences
#index3086916
#% 
#!
  
#*A current-mode RF transmitter for 6-9 GHz MB-OFDM UWB application.
#@Yunfeng Chen,Jinhan Fan,Wei Li,Ning Li,Junyan Ren
#t2011
#cSCIENCE CHINA Information Sciences
#index3086967
#% 
#!
  
#*Double-characters detection of nonlinear frequency modulated signals based on FRFT.
#@Shuwen Xu,Penglang Shui,Xiaochao Yang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086910
#% 
#!
  
#*Online-SVR-compensated nonlinear generalized predictive control for hypersonic vehicles.
#@Lu Cheng,Changsheng Jiang,Ming Pu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086987
#% 
#!
  
#*The maximal rates and minimal decoding delay of more general complex orthogonal designs.
#@Yuan Li,Haibin Kan,Chen Yuan,Huanfei Ma
#t2010
#cSCIENCE CHINA Information Sciences
#index3087127
#% 
#!
  
#*RF/wireless-interconnect: The next wave of connectivity.
#@Sai-Wang Tam,Mau-Chung Frank Chang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086918
#% 
#!
  
#*Globally stable and high-performance Internet congestion control through a computational inspiration from nature.
#@Shahram Jamali,Morteza Analoui
#t2011
#cSCIENCE CHINA Information Sciences
#index3086904
#% 
#!
  
#*Statistical assessment of H/A target decomposition theorems in radar polarimetry.
#@Tao Liu,Gaoming Huang,XueSong Wang,ShunPing Xiao
#t2010
#cSCIENCE CHINA Information Sciences
#index3087019
#% 
#!
  
#*Fuzzy dynamic characteristic model based attitude control of hypersonic vehicle in gliding phase.
#@Xiong Luo,Jiang Li
#t2011
#cSCIENCE CHINA Information Sciences
#index3086933
#% 
#!
  
#*Semantic theory of finite lattice-valued propositional logic.
#@Xiaodong Pan,Yang Xu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087022
#% 
#!
  
#*The next generation models for crops and agro-ecosystems.
#@Xinguang Zhu,Guilian Zhang,Danny Tholen,Yu Wang,Changpeng Xin,Qingfeng Song
#t2011
#cSCIENCE CHINA Information Sciences
#index3086990
#% 
#!
  
#*Multiary turbo code fitting for unitary space-time modulation and its MAP decoding algorithm.
#@Dapeng Zhang,Ju Lu,Hongji Xu,Xingyu Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087116
#% 
#!
  
#*Learning interactions among multi-channel sequences with dynamical influence models.
#@Weidong Zhang,Feng Chen,Wenli Xu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087080
#% 
#!
  
#*Multi-scale sparse feature point correspondence by graph cuts.
#@Hong Zhang,Ying Mu,Yuhu You,Junwei Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087107
#% 
#!
  
#*Multi-channel radar array design method and algorithm.
#@Yi Su,Yutao Zhu,Wenxian Yu,Hongbo Xu,Wentai Lei
#t2010
#cSCIENCE CHINA Information Sciences
#index3087219
#% 
#!
  
#*Design theory and method of multivariate hash function.
#@Houzhen Wang,Huanguo Zhang,Qianhong Wu,Yu Zhang,Chunlei Li,Xinyu Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087052
#% 
#!
  
#*control of a class of nonlinear Hamiltonian descriptor systems.
#@LiYing Sun,YuZhen Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087045
#% 
#!
  
#*The structural analysis of fuzzy measures.
#@Ling Zhang,Bo Zhang,Yanping Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086897
#% 
#!
  
#*Adaptive neural control based on HGO for hypersonic flight vehicles.
#@Bin Xu,Daoxiang Gao,Shixing Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086981
#% 
#!
  
#*Cryptanalysis of efficient proxy signature schemes for mobile communication.
#@Fagen Li,Masaaki Shirase,Tsuyoshi Takagi
#t2010
#cSCIENCE CHINA Information Sciences
#index3087078
#% 
#!
  
#*Asymmetric encryption and signature method with DNA technology.
#@Xuejia Lai,MingXin Lu,Lei Qin,Junsong Han,Xiwen Fang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087015
#% 
#!
  
#*Output feedback control of hypersonic vehicles based on neural network and high gain observer.
#@Xindong Li,Bin Xian,Chen Diao,Yanping Yu,Kaiyan Yang,Yao Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086944
#% 
#!
  
#*Practical image fusion method based on spectral mixture analysis.
#@Wei Yang,Jin Chen,Bunkei Matsushita,Miaogen Shen,Xuehong Chen
#t2010
#cSCIENCE CHINA Information Sciences
#index3087137
#% 
#!
  
#*High power devices in wide bandgap semiconductors.
#@Mikael Östling
#t2011
#cSCIENCE CHINA Information Sciences
#index3086939
#% 
#!
  
#*Algorithms for -fault tolerant power assignments in wireless sensor networks.
#@Li Liu,Lian Li,Bin Hu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087065
#% 
#!
  
#*On an attack on RSA with small CRT-exponents.
#@Lidong Han,Xiaoyun Wang,Guangwu Xu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087142
#% 
#!
  
#*Editor's note.
#@Ru Huang,Bin Zhao,Runsheng Wang,Yimao Cai
#t2011
#cSCIENCE CHINA Information Sciences
#index3087001
#% 
#!
  
#*Power allocation scheme for selfish cooperative communications based on game theory and particle swarm optimizer.
#@Guopeng Zhang,Kun Yang,Enjie Ding
#t2010
#cSCIENCE CHINA Information Sciences
#index3087075
#% 
#!
  
#*Phase noise floor suppression of the output carrier from double sideband-carrier suppressed modulation system.
#@Xin Luo,Xiuyou Han,Yiying Gu,Shanfeng Li,Mingshan Zhao
#t2011
#cSCIENCE CHINA Information Sciences
#index3087009
#% 
#!
  
#*Optimal power allocation for cognitive relay networks: amplify-and-forward versus selection relay.
#@Wenjing Yue,Baoyu Zheng,Qingmin Meng,Wenjie Yue,Jingwu Cui
#t2011
#cSCIENCE CHINA Information Sciences
#index3086943
#% 
#!
  
#*An optimal adaptive filtering algorithm with a polynomial prediction model.
#@Jiajia Tan,Jianqiu Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086979
#% 
#!
  
#*Hybrid state estimation and model-set design of invariable-structure semi-ballistic reentry vehicle.
#@Yongqi Liang,Chongzhao Han
#t2011
#cSCIENCE CHINA Information Sciences
#index3086903
#% 
#!
  
#*Analysis of coupling from core mode to counter-propagating radiation modes in tilted fiber Bragg gratings.
#@ShaoHua Lu,Ou Xu,Suchun Feng,XiaoWei Dong,Li Pei,ShuiSheng Jian
#t2010
#cSCIENCE CHINA Information Sciences
#index3087192
#% 
#!
  
#*A new perturbation algorithm and enhancing security of SFLASH signature scheme.
#@Houzhen Wang,Huanguo Zhang,Haiming Guan,Haiqing Han
#t2010
#cSCIENCE CHINA Information Sciences
#index3087167
#% 
#!
  
#*GPU-based dynamic quad stream for forest rendering.
#@Feng Liu,Wei Hua,Hujun Bao
#t2010
#cSCIENCE CHINA Information Sciences
#index3086890
#% 
#!
  
#*regularization.
#@Zongben Xu,Hai Zhang,Yao Wang,Xiangyu Chang,Yong Liang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087101
#% 
#!
  
#*An interactive rendering system using hierarchical data structure for earth-scale clouds.
#@Yoshinori Dobashi,Tsuyoshi Yamamoto,Tomoyuki Nishita
#t2010
#cSCIENCE CHINA Information Sciences
#index3087016
#% 
#!
  
#*The impact of time synchronization error on passive coherent pulsed radar system.
#@You He,Caisheng Zhang,Jiahui Ding,Xiaoming Tang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087172
#% 
#!
  
#*Two adaptive detectors for range-spread targets in non-Gaussian clutter.
#@You He,Tao Jian,Feng Su,Dianfa Ping
#t2011
#cSCIENCE CHINA Information Sciences
#index3086945
#% 
#!
  
#*Low power 3.1-10.6 GHz IR-UWB transmitter for Gbps wireless communications.
#@Xin Wang,Lin Lin,He Tang,Hui Zhao,Qiang Fang,Jian Liu,Siqiang Fan,Albert Z. Wang,Bin Zhao,Liwu Yang,Gary Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086950
#% 
#!
  
#*Least trace extended set-membership filter.
#@Yi Huang,Zongji Chen,Chen Wei
#t2010
#cSCIENCE CHINA Information Sciences
#index3086891
#% 
#!
  
#*3D integration review.
#@Mukta G. Farooq,Subramanian S. Iyer
#t2011
#cSCIENCE CHINA Information Sciences
#index3086940
#% 
#!
  
#*Low complexity construction for quasi-cyclic low-density parity-check codes by Progressive-Block Growth.
#@Pinyi Ren,Qiang Yuan,Rui Wang,Jun Cai
#t2011
#cSCIENCE CHINA Information Sciences
#index3086896
#% 
#!
  
#*A novel adaptive spectrum forming filter: Application in cognitive ultra-wideband.
#@Bin Li,Zheng Zhou,Weixia Zou
#t2010
#cSCIENCE CHINA Information Sciences
#index3087058
#% 
#!
  
#*Performance analysis of variable-power adaptive modulation in space-time block coded MIMO diversity systems.
#@Xiangbin Yu,Huibin Shi
#t2010
#cSCIENCE CHINA Information Sciences
#index3087108
#% 
#!
  
#*Supporting multiple metrics in QoS-aware BGP.
#@Yong Cui,Youjian Zhao,Turgay Korkmaz,Tielei Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087051
#% 
#!
  
#*Restrictive mechanism of flow control among non-cooperative Internet users.
#@Jun Tao,Xiao Zhong,Yifei Lu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086938
#% 
#!
  
#*Neighboring optimal control for periodic tasks for systems with discontinuous dynamics.
#@Chenggang Liu,Christopher G. Atkeson,Jianbo Su
#t2011
#cSCIENCE CHINA Information Sciences
#index3086951
#% 
#!
  
#*Robust adaptive backstepping control for a class of uncertain nonlinear systems based on disturbance observers.
#@Rong Mei,Qingxian Wu,Changsheng Jiang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087121
#% 
#!
  
#*Some geometric properties of successive difference substitutions.
#@Xiaorong Hou,Song Xu,Junwei Shao
#t2011
#cSCIENCE CHINA Information Sciences
#index3086998
#% 
#!
  
#*A sub-block orthogonal single carrier frequency domain equalization system in fast Rayleigh fading channel.
#@Rui Liu,Xiqi Gao,Wenjin Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087079
#% 
#!
  
#*Approximating maximum likelihood performance reduced dimension VBLAST detection algorithm.
#@Wenchi Cheng,Hailin Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087064
#% 
#!
  
#*CCA-secure unidirectional proxy re-encryption in the adaptive corruption model without random oracles.
#@Jian Weng,Min-Rong Chen,Yanjiang Yang,Robert H. Deng,Kefei Chen,Feng Bao
#t2010
#cSCIENCE CHINA Information Sciences
#index3087044
#% 
#!
  
#*Robust adaptive fuzzy backstepping output feedback tracking control for nonlinear system with dynamic uncertainties.
#@Shaocheng Tong,Yongming Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087136
#% 
#!
  
#*A method for solving Nash equilibria of games based on public announcement logic.
#@Jianying Cui,Xiaojia Tang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087198
#% 
#!
  
#*Improvements on radiation-hardened performance of static induction transistor.
#@Yongshun Wang,Xianliang Luo,Hairong Li,Ziting Wang,Rong Wu,Caizhen Zhang,Siyuan Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087213
#% 
#!
  
#*Research on trusted computing and its development.
#@Changxiang Shen,Huanguo Zhang,Huaimin Wang,Ji Wang,Bo Zhao,Fei Yan,Fajiang Yu,Liqiang Zhang,Mingdi Xu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087180
#% 
#!
  
#*Establishment of a hyperspectral evaluation model of ocean color satellite-measured reflectance.
#@Zhihua Mao,Jianyu Chen,Haiqing Huang,Xianqiang He,Fang Gong
#t2010
#cSCIENCE CHINA Information Sciences
#index3087023
#% 
#!
  
#*Tissue P systems with cell separation: attacking the partition problem.
#@Xingyi Zhang,Shuo Wang,Yunyun Niu,Linqiang Pan
#t2011
#cSCIENCE CHINA Information Sciences
#index3086984
#% 
#!
  
#*A computational trust model for access control in P2P.
#@Bo Lang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087147
#% 
#!
  
#*Prediction-based guidance algorithm for high-lift reentry vehicles.
#@Zhao Zhang,Jun Hu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086932
#% 
#!
  
#*Design and performance of superconducting filter with a linear phase for CDMA2000 communication system.
#@Laiyun Ji,Jie Ma,Jun Sun,Lang Wang,Yanqi Li,Kaiwei Xu,Guodong Xiao,Jiancheng Ren
#t2010
#cSCIENCE CHINA Information Sciences
#index3087220
#% 
#!
  
#*Polarization filtering technique based on oblique projections.
#@Qinyu Zhang,Bin Cao,Jian Wang,Naitong Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087014
#% 
#!
  
#*Complex conforming Delaunay triangulation.
#@Xianhai Meng,Jigang Li,Qin Yang,Qiang Cai,Qiming Chen
#t2010
#cSCIENCE CHINA Information Sciences
#index3087153
#% 
#!
  
#*Precise bounded-concurrent zero-knowledge proofs for NP.
#@Ning Ding,Dawu Gu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087128
#% 
#!
  
#*Correlation analysis of target echoes using distributed transmit array.
#@Ming Jin,Guisheng Liao,Jun Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087100
#% 
#!
  
#*Parameter estimation for SAR moving target in complex image domain.
#@Yu Zuo,Jia Xu,Yingning Peng,Xiang-Gen Xia
#t2010
#cSCIENCE CHINA Information Sciences
#index3087120
#% 
#!
  
#*A single observer location method under the scatter signals position disturbance situation: the constraint total least square method.
#@Tianchi Yang,Chaoqun Yu,Tianpeng Wang,Liang Jin
#t2011
#cSCIENCE CHINA Information Sciences
#index3086902
#% 
#!
  
#*Single station location method in NLOS environment: The circle fitting algorithm.
#@Tianchi Yang,Liang Jin
#t2011
#cSCIENCE CHINA Information Sciences
#index3086941
#% 
#!
  
#*SQUARE attack on block ciphers with low algebraic degree.
#@Bing Sun,Ruilin Li,Longjiang Qu,Chao Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087115
#% 
#!
  
#*Precoding scheme maximizing SINR for MIMO broadcast channels.
#@Jianping Zheng,Baoming Bai,Xiao Ma,Xinmei Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087189
#% 
#!
  
#*Editor's note.
#@Weimin Zheng
#t2011
#cSCIENCE CHINA Information Sciences
#index3086923
#% 
#!
  
#*A distributed estimator for on-road target tracking with lane estimation and identification.
#@Yangsheng Chen
#t2010
#cSCIENCE CHINA Information Sciences
#index3087059
#% 
#!
  
#*Salient structural elements based texture synthesis.
#@Bin Pan,Fan Zhong,Shuai Wang,Wei Chen,Qunsheng Peng
#t2011
#cSCIENCE CHINA Information Sciences
#index3086911
#% 
#!
  
#*Advanced information feedback strategy in intelligent two-route traffic flow systems.
#@Chuanfei Dong,Xu Ma,Binghong Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087109
#% 
#!
  
#*Advanced list scheduling heuristic for task scheduling with communication contention for parallel embedded systems.
#@Pengcheng Mu,Jean-François Nezan,Mickaël Raulet,Jean-Gabriel Cousin
#t2010
#cSCIENCE CHINA Information Sciences
#index3087017
#% 
#!
  
#*A circular zone partition method for identifying Duffing oscillator state transition and its application to BPSK signal demodulation.
#@Yongqing Fu,Dongmei Wu,Lin Zhang,Xingyuan Li
#t2011
#cSCIENCE CHINA Information Sciences
#index3086993
#% 
#!
  
#*Narrow-band radar imaging of spinning targets.
#@Xueru Bai,Guangcai Sun,Qisong Wu,Mengdao Xing,Zheng Bao
#t2011
#cSCIENCE CHINA Information Sciences
#index3086930
#% 
#!
  
#*A novel key pre-distribution scheme for wireless distributed sensor networks.
#@Dingyi Pei,Jun-Wu Dong,Chunming Rong
#t2010
#cSCIENCE CHINA Information Sciences
#index3087144
#% 
#!
  
#*Performance evaluation of half-duplex relay-based opportunistic cooperation diversity.
#@YuLong Zou,Baoyu Zheng,Jia Zhu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087195
#% 
#!
  
#*The discrete multiple-parameter fractional Fourier transform.
#@Jun Lang,Ran Tao,Yue Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087053
#% 
#!
  
#*Principles and construction of MSD adder in ternary optical computer.
#@Yi Jin,Yunfu Shen,Junjie Peng,Shiyi Xu,Guangtai Ding,Dongjian Yue,Haihang You
#t2010
#cSCIENCE CHINA Information Sciences
#index3087114
#% 
#!
  
#*Joint subcarrier and power allocation in uplink OFDMA systems based on stochastic game.
#@Dan Wu,Yueming Cai,Yanming Sheng
#t2010
#cSCIENCE CHINA Information Sciences
#index3087072
#% 
#!
  
#*A multiple user sharing behaviors based approach for fake file detection in P2P environments.
#@Jing Jiang,Yongjun Li,Qinyuan Feng,Peng Huang,Yafei Dai
#t2010
#cSCIENCE CHINA Information Sciences
#index3087050
#% 
#!
  
#*The relative generalized Hamming weight and the semilinear equivalence of codes.
#@Zihui Liu,Jie Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086972
#% 
#!
  
#*Performance of iteratively decoded bit-interleaved coded modulation with chaos based interleaving strategies.
#@Xuelan Zou,Weiyan Liu,Guangzeng Feng
#t2010
#cSCIENCE CHINA Information Sciences
#index3087221
#% 
#!
  
#*A tetrahedral data model for unstructured data management.
#@Wei Li,Bo Lang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087061
#% 
#!
  
#*A fast local routing repair scheme for wireless mobile ad hoc network.
#@Danyang Qin,Xuejun Sha,Yubin Xu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086953
#% 
#!
  
#*Universally composable one-time signature and broadcast authentication.
#@Junwei Zhang,Jianfeng Ma,Sang-Jae Moon
#t2010
#cSCIENCE CHINA Information Sciences
#index3087129
#% 
#!
  
#*Multi-layer network architecture in support of end-to-end transparent optical connectivities.
#@Hongxiang Guo,Jian Wu,Xiaobin Hong,Jintong Lin
#t2011
#cSCIENCE CHINA Information Sciences
#index3087008
#% 
#!
  
#*Key technologies of light field capture for 3D reconstruction in microscopic scene.
#@Yu Wang,Xiangyang Ji,Qionghai Dai
#t2010
#cSCIENCE CHINA Information Sciences
#index3087159
#% 
#!
  
#*Robust cooperative spectrum sensing schemes for fading channels in cognitive radio networks.
#@Wenjing Yue,Baoyu Zheng,Qingmin Meng,Jingwu Cui,Peizhong Xie
#t2011
#cSCIENCE CHINA Information Sciences
#index3086905
#% 
#!
  
#*Fast and convergence-guaranteed algorithm for linear separation.
#@Zhiyong Liu,David Zhang,Yugang Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087112
#% 
#!
  
#*Monocular vision-based iterative pose estimation algorithm from corresponding feature points.
#@Shijie Zhang,Xibin Cao,Fan Zhang,Liang He
#t2010
#cSCIENCE CHINA Information Sciences
#index3087063
#% 
#!
  
#*Control allocation for a V/STOL aircraft based on robust fuzzy control.
#@Yong Fan,Xianyu Meng,Xili Yang,Kai Liu,Ji-hong Zhu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086942
#% 
#!
  
#*A maximum principle for partially observed optimal control of forward-backward stochastic control systems.
#@Zhen Wu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087186
#% 
#!
  
#*An algorithm to compute maximal contractions for Horn clauses.
#@Jie Luo,Wei Li
#t2011
#cSCIENCE CHINA Information Sciences
#index3086999
#% 
#!
  
#*Memetic computation based on regulation between neural and immune systems: the framework and a case study.
#@Maoguo Gong,Licheng Jiao,Fang Liu,Jie Yang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087068
#% 
#!
  
#*Efficient random saliency map detection.
#@Zhiyong Huang,Fazhi He,Xiantao Cai,Zhengqin Zou,Jing Liu,Mingming Liang,Xiao Chen
#t2011
#cSCIENCE CHINA Information Sciences
#index3086971
#% 
#!
  
#*Improved innovation-based adaptive Kalman filter for dual-frequency navigation using carrier phase.
#@Chenxi Lu,Yunhua Tan,Bocheng Zhu,Lezhu Zhou
#t2010
#cSCIENCE CHINA Information Sciences
#index3087150
#% 
#!
  
#*Chaos correlation optical time domain reflectometry.
#@Anbang Wang,Yuncai Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087139
#% 
#!
  
#*Image denoising and deblurring: non-convex regularization, inverse diffusion and shock filter.
#@Shujun Fu,Caiming Zhang,Xuecheng Tai
#t2011
#cSCIENCE CHINA Information Sciences
#index3086978
#% 
#!
  
#*Corslet: A shared storage system keeping your data private.
#@Wei Xue,Jiwu Shu,Yang Liu,Mao Xue
#t2011
#cSCIENCE CHINA Information Sciences
#index3086960
#% 
#!
  
#*VMStore: Distributed storage system for multiple virtual machines.
#@Xiaofei Liao,He Li,Hai Jin,Haixiang Hou,Yue Jiang,Haikun Liu
#t2011
#cSCIENCE CHINA Information Sciences
#index3087004
#% 
#!
  
#*P3Stor: A parallel, durable flash-based SSD for enterprise-scale storage systems.
#@Nong Xiao,Zhiguang Chen,Fang Liu,Ming-che Lai,Longfei An
#t2011
#cSCIENCE CHINA Information Sciences
#index3086912
#% 
#!
  
#*A proof of the convergence theorem of maximum-entropy clustering algorithm.
#@Shijun Ren,Yadong Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3086887
#% 
#!
  
#*An improved line-of-sight method for visibility analysis in 3D complex landscapes.
#@Liu Liu,Liqiang Zhang,Jingtao Ma,Liang Zhang,Xingming Zhang,Zhiqiang Xiao,Ling Yang
#t2010
#cSCIENCE CHINA Information Sciences
#index3086892
#% 
#!
  
#*Lattice-valued modal propositional logic and its completeness.
#@Huixian Shi,Guojun Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3086894
#% 
#!
  
#*A new approach of motion compensation for synthetic wideband radar under multitarget environment.
#@Teng Long,Yang Li,Xin Guo
#t2010
#cSCIENCE CHINA Information Sciences
#index3087176
#% 
#!
  
#*A more efficient accountable authority IBE scheme under the DL assumption.
#@Peng Xu,Guohua Cui,Cai Fu,Xueming Tang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087187
#% 
#!
  
#*Generalized adaptive subspace detector for range-Doppler spread target with high resolution radar.
#@Fengzhou Dai,Hongwei Liu,Shunjun Wu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086986
#% 
#!
  
#*Augmented reality registration algorithm based on nature feature recognition.
#@Jing Chen,Yongtian Wang,Junwei Guo,Wei Liu,Jingdun Lin,Kang Xue,Yue Liu,Gangyi Ding
#t2010
#cSCIENCE CHINA Information Sciences
#index3087149
#% 
#!
  
#*Pilot-aided channel estimation for CDD-OFDM systems.
#@Jiancun Fan,Qinye Yin,Wenjie Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087212
#% 
#!
  
#*Analysis of moment invariants under general linear transformation.
#@Lu Hong Diao,Hua Li,Sen Zhang,Lei Liu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087123
#% 
#!
  
#*ML integer frequency offset estimation for OFDM systems with null subcarriers: Estimation range and pilot design.
#@Feng Shu,Stevan M. Berber,Dongming Wang,Qinchuan Zhang,Mao Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087092
#% 
#!
  
#*An efficient ranging method based on Chinese remainder theorem for RIPS measurement.
#@Chen Wang,Qinye Yin,Wenjie Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087085
#% 
#!
  
#*Generalized gradient projection neural networks for nonsmooth optimization problems.
#@Guocheng Li,Shiji Song,Cheng Wu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087130
#% 
#!
  
#*On the TOPS mode spaceborne SAR.
#@Xia Bai,Jinping Sun,Wen Hong,Shiyi Mao
#t2010
#cSCIENCE CHINA Information Sciences
#index3087094
#% 
#!
  
#*A user-space file system for on-demand legacy desktop software.
#@Youhui Zhang,Gelin Su,Weimin Zheng
#t2011
#cSCIENCE CHINA Information Sciences
#index3086913
#% 
#!
  
#*An unsupervised grid-based approach for clustering analysis.
#@Shihong Yue,Jeen-Shing Wang,Gao Tao,Huaxiang Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087087
#% 
#!
  
#*A novel method for the improvement of power efficiency in high peak-to-average-power ratio communication systems.
#@Zhiyuan Ren,Hailin Zhang,Kai Guo
#t2010
#cSCIENCE CHINA Information Sciences
#index3087105
#% 
#!
  
#*Lattice-based artificial endocrine system model and its application in robotic swarms.
#@Qingzheng Xu,Lei Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086997
#% 
#!
  
#*Dynamic tree-based authenticated group key exchange protocol.
#@Hui Li,Chuankun Wu,Jikai Teng
#t2010
#cSCIENCE CHINA Information Sciences
#index3087138
#% 
#!
  
#*Pinning control of general complex dynamical networks with optimization.
#@Junchan Zhao,Junan Lu,Xiaoqun Wu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087224
#% 
#!
  
#*Study on an intelligent fault-tolerant technique for multiple satellite configured navigation under highly dynamic conditions.
#@Shicheng Wang,Xin Zhao,Haibo Min,Zhiguo Liu,Xiaosheng Si
#t2011
#cSCIENCE CHINA Information Sciences
#index3086931
#% 
#!
  
#*A new class of impulse stochastic control models with non-negative control quantity.
#@Xiaopeng Liu,Kunhui Liu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086952
#% 
#!
  
#*Two-dimensional water-filling power allocation algorithm for MIMO-OFDM systems.
#@Yongquan Jiang,Minfen Shen,Yuanping Zhou
#t2010
#cSCIENCE CHINA Information Sciences
#index3087199
#% 
#!
  
#*An improved method for progressive animation models generation.
#@Shixue Zhang,Jinyu Zhao,Enhua Wu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087194
#% 
#!
  
#*A saliency model based on wavelet transform and visual attention.
#@Zhiqiang Li,Tao Fang,Hong Huo
#t2010
#cSCIENCE CHINA Information Sciences
#index3087169
#% 
#!
  
#*On the maximum likelihood method for target localization using MIMO radars.
#@Wei Xia,Zishu He,Yuyu Liao
#t2010
#cSCIENCE CHINA Information Sciences
#index3087077
#% 
#!
  
#*Identification and construction of Boolean functions with maximum algebraic immunity.
#@Meicheng Liu,Dingyi Pei,Yusong Du
#t2010
#cSCIENCE CHINA Information Sciences
#index3087025
#% 
#!
  
#*A PN sequence estimation algorithm for DS signal based on average cross-correlation and eigenanalysis in lower SNR conditions.
#@Liping Wu,Zan Li,Jiandong Li,Chen Chen
#t2010
#cSCIENCE CHINA Information Sciences
#index3087113
#% 
#!
  
#*Implantable CMOS neuro-stimulus chip for visual prosthesis.
#@Xu Zhang,Weihua Pei,Beiju Huang,Shujing Wang,Ning Guan,Kai Guo,Yu Wang,Qiang Gui,Jin Chen,Kai Wang,et al.
#t2011
#cSCIENCE CHINA Information Sciences
#index3087007
#% 
#!
  
#*Technique for image fusion based on non-subsampled contourlet transform domain improved NMF.
#@Weiwei Kong,Yingjie Lei,Yang Lei,Jie Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087151
#% 
#!
  
#*Frequency dispersion effect and parameters extraction method for novel HfO as gate dielectric.
#@Hongxia Liu,Qianwei Kuang,Suzhen Luan,Aaron Zhao,Sai Tallavarjula
#t2010
#cSCIENCE CHINA Information Sciences
#index3087204
#% 
#!
  
#*Comparison of the RF MEMS switches with dielectric layers on the bridge's lower surface and on the transmission line.
#@Kenle Chen,Jinwen Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086970
#% 
#!
  
#*A centrality measure based on spectral optimization of modularity density.
#@Lidong Fu,Lin Gao,Xiaoke Ma
#t2010
#cSCIENCE CHINA Information Sciences
#index3087060
#% 
#!
  
#*Channel-aware and queue-aware joint-layer resource optimization for cognitive radio networks.
#@Kunqi Guo,Lixin Sun,Yong Li,Shilou Jia
#t2010
#cSCIENCE CHINA Information Sciences
#index3087042
#% 
#!
  
#*Manifold contraction for semi-supervised classification.
#@Enliang Hu,Songcan Chen,Xuesong Yin
#t2010
#cSCIENCE CHINA Information Sciences
#index3087131
#% 
#!
  
#*Asynchronous double-precision windows based unmanned aerial vehicle real-time path planning.
#@Min Ren,Xiaohua Huo
#t2010
#cSCIENCE CHINA Information Sciences
#index3087156
#% 
#!
  
#*Some invariant properties of ordered information systems under homomorphism.
#@Changzhong Wang,Degang Chen,Qinghua Hu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087062
#% 
#!
  
#*Construction and cross-correlation analysis of the affective physiological response database.
#@Wanhui Wen,Yuhui Qiu,Guangyuan Liu,Nanpu Cheng,Xiting Huang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087206
#% 
#!
  
#*Fair exchange signature schemes.
#@Jingwei Liu,Rong Sun,Kyungsup Kwak
#t2010
#cSCIENCE CHINA Information Sciences
#index3087104
#% 
#!
  
#*Time-frequency characteristics based motion estimation and imaging for high speed spinning targets via narrowband waveforms.
#@Lei Zhang,Yachao Li,Yan Liu,Mengdao Xing,Zheng Bao
#t2010
#cSCIENCE CHINA Information Sciences
#index3087217
#% 
#!
  
#*Research on distributed intrusion detection system based on multi-living agent.
#@Yue Wang,Ran Tao,Hao Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087086
#% 
#!
  
#*A novel multicluster V-MIMO PCR scheme in large-scale Ad Hoc networks.
#@Yao Zhou,Yueming Cai,Chengkang Pan
#t2010
#cSCIENCE CHINA Information Sciences
#index3087146
#% 
#!
  
#*Robust AVS audio watermarking.
#@Yong Wang,Jiwu Huang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087158
#%532483
#!
  
#*Image universal steganalysis based on best wavelet packet decomposition.
#@Xiangyang Luo,Fenlin Liu,Chunfang Yang,Daoshun Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087122
#% 
#!
  
#*A survey on impulse-radio UWB localization.
#@Zhu Xiao,Yongqiang Hei,Quan Yu,Kechu Yi
#t2010
#cSCIENCE CHINA Information Sciences
#index3087161
#% 
#!
  
#*Next-generation lithography for 22 and 16 nm technology nodes and beyond.
#@Banqiu Wu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086962
#% 
#!
  
#*A 14/11-approximation algorithm for sorting by short block-moves.
#@Haitao Jiang,Daming Zhu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086991
#% 
#!
  
#*novel multi-relay cross-layer cooperative communication strategy based on Jackson queuing model.
#@Xiaorong Xu,Baoyu Zheng
#t2010
#cSCIENCE CHINA Information Sciences
#index3087074
#% 
#!
  
#*Providing personalized converged services based on flexible network reconfiguration.
#@Yuxiang Hu,Julong Lan,Jiangxing Wu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086928
#% 
#!
  
#*On degrees of freedom of the cellular network.
#@Jun Sun,Yingzhuang Liu,Guangxi Zhu
#t2010
#cSCIENCE CHINA Information Sciences
#index3086893
#% 
#!
  
#*A malware detection model based on a negative selection algorithm with penalty factor.
#@Pengtao Zhang,Wei Wang,Ying Tan
#t2010
#cSCIENCE CHINA Information Sciences
#index3086895
#% 
#!
  
#*A low-jitter low-power monolithically integrated optical receiver for SDH STM-16.
#@Yingmei Chen,Zhigong Wang,Li Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086921
#% 
#!
  
#*An approach to forward looking FMCW radar imaging based on two-dimensional Chirp-Z transform.
#@Yi Liang,Hongxian Wang,Long Zhang,Zheng Bao
#t2010
#cSCIENCE CHINA Information Sciences
#index3087095
#% 
#!
  
#*A GTD model and state space approach based method for extracting the UWB scattering center of moving target.
#@Jun Wang,Shaoming Wei,Jinping Sun,Shiyi Mao
#t2011
#cSCIENCE CHINA Information Sciences
#index3086989
#% 
#!
  
#*Approximation algorithm for minimizing relay node placement in wireless sensor networks.
#@Kezhong Lu,Guoliang Chen,Yuhong Feng,Gang Liu,Rui Mao
#t2010
#cSCIENCE CHINA Information Sciences
#index3087143
#% 
#!
  
#*Interpolating triangular meshes by Loop subdivision scheme.
#@Chongyang Deng,Guozhao Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087084
#% 
#!
  
#*Waiting time in block fading MIMO systems with dynamic-depth interleaving.
#@Haiyou Guo,Honglin Hu,Yan Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087141
#% 
#!
  
#*Si nanowire FET and its modeling.
#@Hiroshi Iwai,Kenji Natori,Kenji Shiraishi,Jun-ichi Iwata,Atsushi Oshiyama,Keisaku Yamada,Kenji Ohmori,Kuniyuki Kakushima,Parhat Ahmet
#t2011
#cSCIENCE CHINA Information Sciences
#index3086955
#% 
#!
  
#*Laplacian smoothing transform for face recognition.
#@Suicheng Gu,Ying Tan,Xingui He
#t2010
#cSCIENCE CHINA Information Sciences
#index3087043
#% 
#!
  
#*Construction of almost optimal resilient Boolean functions via concatenating Maiorana-McFarland functions.
#@Weiguo Zhang,Guozhen Xiao
#t2011
#cSCIENCE CHINA Information Sciences
#index3086975
#% 
#!
  
#*Heterodyne mixing and polarization diversity techniques in radio over fiber system with high sensitivity and dispersion tolerance.
#@Kun Xu,Jie Yin,Jian Niu,Xiaoqiang Sun,Jian Wu,Jintong Lin
#t2011
#cSCIENCE CHINA Information Sciences
#index3087006
#% 
#!
  
#*RPPK modulation with high data rates.
#@Bin Li,Zheng Zhou,Weixia Zou
#t2010
#cSCIENCE CHINA Information Sciences
#index3087024
#% 
#!
  
#*Studies on MB-SAR 3D imaging algorithm using Yule-Walker method.
#@Bin Wang,Yanping Wang,Wen Hong,Weixian Tan,Yirong Wu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087093
#% 
#!
  
#*Efficient Monte Carlo-based options pricing on graphics processors and its optimizations.
#@Li Liu,Youhui Zhang,Li Liu,Guangwen Yang,Weimin Zheng
#t2010
#cSCIENCE CHINA Information Sciences
#index3087089
#% 
#!
  
#*Inelastic electron tunneling spectroscopy (IETS) study of high-k gate dielectrics.
#@T. P. Ma
#t2011
#cSCIENCE CHINA Information Sciences
#index3087005
#% 
#!
  
#*Efficient signcryption between TPKC and IDPKC and its multi-receiver construction.
#@Yinxia Sun,Hui Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087184
#% 
#!
  
#*Autoproc: An automatic proactive replication scheme for P2P storage.
#@Zhi Yang,Yafei Dai
#t2011
#cSCIENCE CHINA Information Sciences
#index3086922
#% 
#!
  
#*Logical verification of scientific discovery.
#@Wei Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087020
#% 
#!
  
#*Approximate computation of Madaline sensitivity based on discrete stochastic technique.
#@Shuiming Zhong,Xiaoqin Zeng,Huiyi Liu,Yan Xu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087164
#% 
#!
  
#*Stabilization for discrete-time fuzzy systems with Takagi-Sugeno's models: reduce the complexity.
#@Likui Wang,Xiaodong Liu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087207
#% 
#!
  
#*A self-calibration algorithm for cross array in the presence of mutual coupling.
#@Xiaoqin Hu,Hui Chen,Yongliang Wang,Jianwen Chen
#t2011
#cSCIENCE CHINA Information Sciences
#index3086915
#% 
#!
  
#*Local segment-shared protection based on source egress gateway selection for multi-domain optical mesh networks.
#@Shengfeng Zhang,Yunfeng Peng,Shu Du,Xiaolong Yang,Keping Long
#t2011
#cSCIENCE CHINA Information Sciences
#index3086935
#% 
#!
  
#*A property-based attestation protocol for TCM.
#@Dengguo Feng,Yu Qin
#t2010
#cSCIENCE CHINA Information Sciences
#index3087225
#% 
#!
  
#*A framework of physical layer technique assisted authentication for vehicular communication networks.
#@Hong Wen,Pin-Han Ho,Guang Gong
#t2010
#cSCIENCE CHINA Information Sciences
#index3087179
#% 
#!
  
#*Universally composable secure TNC model and EAP-TNC protocol in IF-T.
#@Junwei Zhang,Jianfeng Ma,Sang-Jae Moon
#t2010
#cSCIENCE CHINA Information Sciences
#index3087205
#% 
#!
  
#*A novel two-layered optical satellite network of LEO/MEO with zero phase factor.
#@Yongjun Li,Jili Wu,Shanghong Zhao,Wen Meng,Lihua Ma,Lei Shi,Xingchun Chu,Rui Hou,Tian Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087033
#% 
#!
  
#*Array errors active calibration algorithm and its improvement.
#@Ding Wang,Ying Wu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087047
#% 
#!
  
#*Asymptotic performance of amplify-and-forward MIMO relaying with transmit antenna selection.
#@Lei Cao,Dacheng Yang,Hongwen Yang,Chao Feng,Xin Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087034
#% 
#!
  
#*Embedded DHT overlays in virtual computing environments.
#@Yiming Zhang,Xicheng Lu,Dongsheng Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087096
#% 
#!
  
#*Matrix calculation of high-dimensional cross product and its application in automatic recognition of the endmembers of hyperspectral imagary.
#@Xiurui Geng,Yongchao Zhao,Suhong Liu,Fuxiang Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086994
#% 
#!
  
#*Optimal allocation of multi-sensor passive localization.
#@Bencai Wang,You He,Guo-Hong Wang,Jianjuan Xiu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087197
#% 
#!
  
#*Predicting the behavior of large scale P2P systems by parallel discrete event simulation.
#@Weimin Zheng,Hongliang Yu,Guangyu Shi,Jian Chen
#t2010
#cSCIENCE CHINA Information Sciences
#index3087071
#% 
#!
  
#*Parallel implementation of fast multipole method based on JASMIN.
#@Xiaolin Cao,Zeyao Mo,Xu Liu,Xiaowen Xu,Aiqing Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086983
#% 
#!
  
#*A novel voltage-type sense amplifier for low-power nonvolatile memories.
#@Ming Li,Jinfeng Kang,Yangyuan Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087166
#% 
#!
  
#*Short-ciphertext and BDH-based CCA2 secure certificateless encryption.
#@Yinxia Sun,Hui Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087165
#% 
#!
  
#*Extended multivariate public key cryptosystems with secure encryption function.
#@Houzhen Wang,Huanguo Zhang,Zhang-yi Wang,Ming Tang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086988
#% 
#!
  
#*Mechanical decision for a class of integral inequalities.
#@Lu Yang,Wensheng Yu,Ruyi Yuan
#t2010
#cSCIENCE CHINA Information Sciences
#index3087054
#% 
#!
  
#*An introduction to Tsinghua Cloud.
#@Weimin Zheng
#t2010
#cSCIENCE CHINA Information Sciences
#index3087040
#% 
#!
  
#*Optimizing write operation on replica in data grid.
#@Pengzhi Xu,Yongwei Wu,Xiaomeng Huang,Guangwen Yang,Weimin Zheng
#t2011
#cSCIENCE CHINA Information Sciences
#index3086901
#% 
#!
  
#*QoS-awared replica placement techniques in data grid applications.
#@Nong Xiao,Wei Fu,Xicheng Lu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087027
#% 
#!
  
#*An efficient rendering method for large vector data on large terrain models.
#@Ling Yang,Liqiang Zhang,Zhizhong Kang,Zhiqiang Xiao,Junhuan Peng,Xingming Zhang,Liu Liu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087013
#% 
#!
  
#*A new method for removing mixed noises.
#@Bing Li,Quansheng Liu,Jiawei Xu,Xiaojun Luo
#t2011
#cSCIENCE CHINA Information Sciences
#index3086908
#% 
#!
  
#*DMM: A dynamic memory mapping model for virtual machines.
#@Haogang Chen,Xiaolin Wang,Zhenlin Wang,Binbin Zhang,Yingwei Luo,Xiaoming Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087069
#% 
#!
  
#*Outage-optimal relaying through opportunistic hybrid forward cooperation.
#@Yubo Li,Qinye Yin,Junsong Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086929
#% 
#!
  
#*Adaptive recurrent-functional-link-network control for hypersonic vehicles with atmospheric disturbances.
#@Yanli Du,Qingxian Wu,Changsheng Jiang,Yali Xue
#t2011
#cSCIENCE CHINA Information Sciences
#index3086961
#% 
#!
  
#*Kinematics analysis of a novel all-attitude flight simulator.
#@Xiaochen Wang,Hui Zhao,Kemao Ma,Xin Huo,Yu Yao
#t2010
#cSCIENCE CHINA Information Sciences
#index3087154
#% 
#!
  
#*An auto-focus algorithm for imaging of objects under a lossy earth from multi-frequency and multi-monostatic data.
#@Yanli Liu,LianLin Li,Fang Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087135
#% 
#!
  
#*Hoare logic-based genetic programming.
#@Pei He,Lishan Kang,Colin G. Johnson,Shi Ying
#t2011
#cSCIENCE CHINA Information Sciences
#index3086948
#% 
#!
  
#*Fuzzy dynamic characteristic modeling and adaptive control of nonlinear systems and its application to hypersonic vehicles.
#@Hongbo Li,Zengqi Sun,Haibo Min,Jianqiu Deng
#t2011
#cSCIENCE CHINA Information Sciences
#index3086968
#% 
#!
  
#*Modification ratio estimation for a category of adaptive steganography.
#@Xiangyang Luo,Fenlin Liu,Chunfang Yang,Shiguo Lian
#t2010
#cSCIENCE CHINA Information Sciences
#index3087185
#% 
#!
  
#*Spatial polarization characteristics and scattering matrix measurement of orthogonal polarization binary array radar.
#@Huanyao Dai,Xuesong Wang,Yongzhen Li,Jia Luo,Shunping Xiao
#t2010
#cSCIENCE CHINA Information Sciences
#index3087174
#% 
#!
  
#*Centroid-based semi-fragile audio watermarking in hybrid domain.
#@Hongxia Wang,Mingquan Fan
#t2010
#cSCIENCE CHINA Information Sciences
#index3087216
#% 
#!
  
#*An adaptive hybrid optimizer based on particle swarm and differential evolution for global optimization.
#@Bin Xin,Jie Chen,Zhihong Peng,Feng Pan
#t2010
#cSCIENCE CHINA Information Sciences
#index3087103
#% 
#!
  
#*Superscalar communication: A runtime optimization for distributed applications.
#@Huiba Li,Shengyun Liu,Yuxing Peng,Dongsheng Li,Hangjun Zhou,Xicheng Lu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087083
#% 
#!
  
#*Adaptive bidirectional diffusion for image restoration.
#@Shujun Fu,Caiming Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087140
#% 
#!
  
#*Formation control for networked spacecraft in deep space: with or without communication delays and with switching topology.
#@Nan Wang,Tianwu Zhang,Jieqiong Xu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086954
#% 
#!
  
#*Fuzzy tracking control design for hypersonic vehicles via T-S model.
#@Daoxiang Gao,Zengqi Sun
#t2011
#cSCIENCE CHINA Information Sciences
#index3086920
#% 
#!
  
#*A quasi-human algorithm for solving the three-dimensional rectangular packing problem.
#@Kun He,Wenqi Huang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087222
#% 
#!
  
#*Spectral integration and perception of Chinese back vowel /γ/.
#@Shuiyuan Yu,Yudong Chen,Jieru Wu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087215
#% 
#!
  
#*-way blending problem of circular quadrics.
#@Mei-e Fang,Guozhao Wang,Weiyin Ma
#t2010
#cSCIENCE CHINA Information Sciences
#index3087097
#% 
#!
  
#*Pair-wise error probability and its Chernoff upper bound for unitary space-time code.
#@Dapeng Zhang,Ju Liu,Hongji Xu,Hui Ji
#t2010
#cSCIENCE CHINA Information Sciences
#index3087046
#% 
#!
  
#*Throughput maximization in UWB-based ad-hoc networks.
#@Chuanyun Zou,Zygmunt J. Haas,Sheng Zou
#t2010
#cSCIENCE CHINA Information Sciences
#index3087012
#% 
#!
  
#*Conjugate adjoining problem in braid groups and new design of braid-based signatures.
#@Licheng Wang,Lihua Wang,Zhenfu Cao,Yixian Yang,Xinxin Niu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087021
#% 
#!
  
#*Analysis and experimentation of key technologies in service-oriented optical internet.
#@Yuefeng Ji,Danping Ren,Hui Li,Xuejun Liu,Zhengzhong Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086996
#% 
#!
  
#*A fully differential transimpedance amplifier with integrated differential photodetector in standard CMOS process for optical communications and interconnects.
#@Changliang Yu,Luhong Mao,Xindong Xiao,Shilin Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086949
#% 
#!
  
#*Capability description and discovery of Internetware entity.
#@Puwei Wang,Zhi Jin,Hongyan Liu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087191
#% 
#!
  
#*Ultra-thin films and multigate devices architectures for future CMOS scaling.
#@Simon Deleonibus
#t2011
#cSCIENCE CHINA Information Sciences
#index3086914
#% 
#!
  
#*The driving force for development of IC and system in future: Reducing the power consumption and improving the ratio of performance to power consumption.
#@Yangyuan Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086963
#% 
#!
  
#*A fast stereoscopic video coding algorithm based on JMVM.
#@Zhipin Deng,Kebin Jia,Yui-Lam Chan,Chang-Hong Fu,Wan-Chi Siu
#t2011
#cSCIENCE CHINA Information Sciences
#index3087002
#% 
#!
  
#*Numerically stable method of signal subspace estimation based on multistage Wiener filter.
#@Xuebin Zhuang,Xiaowei Cui,Mingquan Lu,Zhenming Feng
#t2010
#cSCIENCE CHINA Information Sciences
#index3087209
#% 
#!
  
#*A novel computing model of the maximum clique problem based on circular DNA.
#@Jing Yang,Cheng Zhang,Jin Xu,Xiangrong Liu,Xiaoli Qiang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087110
#% 
#!
  
#*Stability of linear discrete switched systems with delays based on average dwell time method.
#@Yong Wang,Wei Wang,Guoping Liu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087055
#% 
#!
  
#*Twisted Ate pairing on hyperelliptic curves and applications.
#@Fangguo Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087090
#% 
#!
  
#*Security model and modular design of fair authentication key exchange protocols.
#@Dengguo Feng,Weidong Chen
#t2010
#cSCIENCE CHINA Information Sciences
#index3087035
#% 
#!
  
#*Fuzzy tolerance quotient spaces and fuzzy subsets.
#@Ling Zhang,Bo Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087171
#% 
#!
  
#*Degree elevation operator and geometric construction of C-B-spline curves.
#@Ping Zhu,Guozhao Wang,Jingjing Yu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087160
#% 
#!
  
#*Target classification with low-resolution radar based on dispersion situations of eigenvalue spectra.
#@Feng Chen,Hongwei Liu,Lan Du,Zheng Bao
#t2010
#cSCIENCE CHINA Information Sciences
#index3087102
#% 
#!
  
#*Finite element analysis and optimization of temperature field in GaN-MOCVD reactor.
#@Jincheng Zhang,Zhiming Li,Yue Hao,Hao Wang,Peixian Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087168
#% 
#!
  
#*Direct gray-scale extraction of topographic features for vein recognition.
#@Wenxiong Kang,Huasong Li,Feiqi Deng
#t2010
#cSCIENCE CHINA Information Sciences
#index3087082
#% 
#!
  
#*Accurate location of all surface wave modes for Green's functions of a layered medium by consecutive perturbations.
#@Zhe Song,Houxing Zhou,Jun Hu,Weidong Li,Wei Hong
#t2010
#cSCIENCE CHINA Information Sciences
#index3087182
#% 
#!
  
#*A two-round honest-verifier zero-knowledge protocol.
#@Hanwu Liu,Dongdai Lin
#t2010
#cSCIENCE CHINA Information Sciences
#index3087032
#% 
#!
  
#*Radial acceleration estimation within one pulse echo based on Hough-ambiguity transformation.
#@Guohong Wang,Shuyi Jia,Wenchao Du
#t2010
#cSCIENCE CHINA Information Sciences
#index3087202
#% 
#!
  
#*Cubic surface fitting to image by combination.
#@Xuemei Li,Caiming Zhang,Yizhen Yue,Kunpeng Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087148
#% 
#!
  
#*Phugoid dynamic characteristic of hypersonic gliding vehicles.
#@Xiaoqing Chen,Zhongxi Hou,Jianxia Liu,Xiaoqian Chen
#t2011
#cSCIENCE CHINA Information Sciences
#index3086992
#% 
#!
  
#*Subsurface scattering using splat-based diffusion in point-based rendering.
#@Hyeon-Joong Kim,Bernd Bickel,Markus H. Gross,Soo-Mi Choi
#t2010
#cSCIENCE CHINA Information Sciences
#index3087041
#% 
#!
  
#*A wideband beamforming method based on directional uniform circular arrays.
#@Pengcheng Mu,Qinye Yin,Jianguo Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087026
#% 
#!
  
#*Arm/trunk motion generation for humanoid robot.
#@Dengpeng Xing,Jianbo Su
#t2010
#cSCIENCE CHINA Information Sciences
#index3087162
#% 
#!
  
#*Spatial continuity incorporated multi-attribute fuzzy clustering algorithm for blood vessels segmentation.
#@Jutao Hao,Jingjing Zhao,Minglu Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087133
#% 
#!
  
#*Decoy-state quantum key distribution for the heralded pair coherent state photon source with intensity fluctuations.
#@Chun Zhou,Wansu Bao,Xiangqun Fu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087132
#% 
#!
  
#*Statistic characteristic analysis of forward scattering surface clutter in bistatic radar.
#@Cheng Hu,Teng Long,Tao Zeng
#t2010
#cSCIENCE CHINA Information Sciences
#index3087091
#% 
#!
  
#*Performance analysis of a noise-normalized FFH/MFSK receiver over Rayleigh fading channels with partial-band noise jamming.
#@Zhiqiang Zhou,Shaoqian Li,Yufan Cheng
#t2011
#cSCIENCE CHINA Information Sciences
#index3086969
#% 
#!
  
#*A unified dynamic model for locomotion and manipulation of a snake-like robot based on differential geometry.
#@Zhifeng Wang,Shugen Ma,Bin Li,Yuechao Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086909
#% 
#!
  
#*The performance of ultra wideband acquisition system based on energy detection over IEEE 802.15.3a channel.
#@Zhihua Yang,Qinyu Zhang,Naitong Zhang,Ye Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086900
#% 
#!
  
#*Bayesian cognitive trust model based self-clustering algorithm for MANETs.
#@Wei Wang,Guosun Zeng
#t2010
#cSCIENCE CHINA Information Sciences
#index3086888
#% 
#!
  
#*Optimality strategy of a sealed-offer simultaneous bargaining protocol.
#@Linlan Zhang,Xueguang Chen,Liu Hong
#t2011
#cSCIENCE CHINA Information Sciences
#index3086934
#% 
#!
  
#*Single-step-lag OOSM algorithm based on unscented transformation.
#@Jinguang Chen,Jie Li,Xinbo Gao
#t2011
#cSCIENCE CHINA Information Sciences
#index3086899
#% 
#!
  
#*Efficient CRT-based residue-to-binary converter for the arbitrary moduli set.
#@Jianwen Chen,Ruohe Yao
#t2011
#cSCIENCE CHINA Information Sciences
#index3086974
#% 
#!
  
#*Rectangle blocking matrices based unitary multistage Wiener reduced-rank joint detection algorithm for multiple input multiple output systems.
#@Pinyi Ren,Rui Wang,Shijiao Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087203
#% 
#!
  
#*Network layered priority mapping theory.
#@Dong Yang,Hongke Zhang,Fei Song,Shiyong Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087183
#% 
#!
  
#*Hybrid of comprehensive learning particle swarm optimization and SQP algorithm for large scale economic load dispatch optimization of power system.
#@Yu Wang,Bin Li,Bo Yuan
#t2010
#cSCIENCE CHINA Information Sciences
#index3087031
#% 
#!
  
#*An implementation and optimization for scalable DHT crawler.
#@Mo Zhou,Jianyu Zhang,Yafei Dai
#t2010
#cSCIENCE CHINA Information Sciences
#index3087190
#% 
#!
  
#*An eigenstructure-based 2D DOA estimation method using dual-size spatial invariance array.
#@Xueya Yang,Baixiao Chen,Yunhai Chen
#t2011
#cSCIENCE CHINA Information Sciences
#index3086917
#% 
#!
  
#*On the design of compensator for quantization-caused input-output deviation.
#@Yuqian Guo,Weihua Gui,Chunhua Yang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086985
#% 
#!
  
#*Research on theory and key technology of trusted computing platform security testing and evaluation.
#@Huanguo Zhang,Fei Yan,Jianming Fu,Mingdi Xu,Yang Yang,Fan He,Jing Zhan
#t2010
#cSCIENCE CHINA Information Sciences
#index3087111
#% 
#!
  
#*On constant-round zero-knowledge proofs of knowledge for NP-relations.
#@Hongda Li,Haixia Xu,Bao Li,Dengguo Feng
#t2010
#cSCIENCE CHINA Information Sciences
#index3087157
#% 
#!
  
#*Real solution isolation with multiplicity of zero-dimensional triangular systems.
#@Zhihai Zhang,Tian Fang,Bican Xia
#t2011
#cSCIENCE CHINA Information Sciences
#index3087003
#% 
#!
  
#*OpenMP compiler for distributed memory architectures.
#@Jue Wang,Changjun Hu,Jilin Zhang,Jianjiang Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087223
#% 
#!
  
#*A linear ridgelet network approach for fault diagnosis of analog circuit.
#@Yingqun Xiao,Yigang He
#t2010
#cSCIENCE CHINA Information Sciences
#index3087076
#% 
#!
  
#*Research on network RTK positioning algorithm aided by quantum ranging.
#@Chunyan Yang,Dewei Wu,Yane Lu,Yonglin Yu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087188
#% 
#!
  
#*Construction of Boolean functions with maximum algebraic immunity and count of their annihilators at lowest degree.
#@Yusong Du,Dingyi Pei
#t2010
#cSCIENCE CHINA Information Sciences
#index3087029
#% 
#!
  
#*Receding horizon control for multi-UAVs close formation control based on differential evolution.
#@Xiangyin Zhang,Haibin Duan,Yaxiang Yu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087177
#% 
#!
  
#*Multi-objective robust control based on fuzzy singularly perturbed models for hypersonic vehicles.
#@Yenan Hu,Yuan Yuan,Haibo Min,Fuchun Sun
#t2011
#cSCIENCE CHINA Information Sciences
#index3086919
#% 
#!
  
#*Constructing quantum error correcting code via logic function.
#@Shuqin Zhong,Zhi Ma,Yajie Xu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087208
#% 
#!
  
#*Advanced strain engineering for state-of-the-art nanoscale CMOS technology.
#@Bin (Frank) Yang,Ming Cai
#t2011
#cSCIENCE CHINA Information Sciences
#index3086937
#% 
#!
  
#*Direct adaptive neural control for stabilization of nonlinear time-delay systems.
#@Min Wang,Siying Zhang,Bing Chen,Fei Luo
#t2010
#cSCIENCE CHINA Information Sciences
#index3087073
#% 
#!
  
#*Competent predicate abstraction in model checking.
#@Li Li,Xiaoyu Song,Ming Gu,Xiangyu Luo
#t2011
#cSCIENCE CHINA Information Sciences
#index3086964
#% 
#!
  
#*-SkyDiv query: Effectively improve the usefulness of skylines.
#@Zhenhua Huang,Yang Xiang,Ziyu Lin
#t2010
#cSCIENCE CHINA Information Sciences
#index3087119
#% 
#!
  
#*Truncation error calculation based on Richardson extrapolation for variable-step collaborative simulation.
#@Heming Zhang,Silv Liang,Shiji Song,Hongwei Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086959
#% 
#!
  
#*Unitary cyclic ESPRIT-like direction finding.
#@Zhigang Liu,Jinkuan Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087211
#% 
#!
  
#*Sidelobe reduction based on spectrum reshaping in microwave imaging.
#@Huaijun Wang,Yi Su,Hongbo Xu,Yutao Zhu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086977
#% 
#!
  
#*Self-excitation of neurons leads to multiperiodicity of discrete-time neural networks with distributed delays.
#@Zhenkun Huang,Xinghua Wang,Sannay Mohamad
#t2011
#cSCIENCE CHINA Information Sciences
#index3086936
#% 
#!
  
#*Multi-channel neural mass modelling and analyzing.
#@Dong Cui,Xiaoli Li,Xueqing Ji,Lanxiang Liu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086995
#% 
#!
  
#*CFAR assessment of covariance matrix estimators for non-Gaussian clutter.
#@You He,Tao Jian,Feng Su,Changwen Qu,Dianfa Ping
#t2010
#cSCIENCE CHINA Information Sciences
#index3087218
#% 
#!
  
#*Research on allocation efficiency of the redistributed pseudo inverse algorithm.
#@Jingping Shi,Weiguo Zhang,Guangwen Li,Xiaoxiong Liu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087163
#% 
#!
  
#*Performance analysis and partner selection for cooperative diversity based on MQAM modulation.
#@Jing Li,Jianhua Ge,Yong Wang,Hao Yao
#t2010
#cSCIENCE CHINA Information Sciences
#index3087124
#% 
#!
  
#*A novel operation mode for spaceborne polarimetric SAR.
#@Weikong Qi,Weidong Yu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086926
#% 
#!
  
#*PDMS prism-glass optical coupling for surface plasmon resonance sensors based on MEMS technology.
#@Zhaoxin Geng,Qing Li,Wei Wang,Zhihong Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087106
#% 
#!
  
#*Secure network coding in the presence of eavesdroppers.
#@Mingxing Luo,Yixian Yang,Licheng Wang,Xinxin Niu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087049
#% 
#!
  
#*Theoretical analysis of polarization properties for tilted fiber Bragg gratings.
#@Ou Xu,ShaoHua Lu,ShuiSheng Jian
#t2010
#cSCIENCE CHINA Information Sciences
#index3087152
#% 
#!
  
#*Color image enhancement based on HVS and PCNN.
#@Yudong Zhang,Lenan Wu,Shuihua Wang,Geng Wei
#t2010
#cSCIENCE CHINA Information Sciences
#index3087056
#% 
#!
  
#*Investigation on the skewness for independent component analysis.
#@Zhiyong Liu,Hong Qiao
#t2011
#cSCIENCE CHINA Information Sciences
#index3086946
#% 
#!
  
#*A note on the 2-connectivity in one-dimensional ad hoc networks.
#@Yilun Shang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086966
#% 
#!
  
#*A multi-scale and multi-orientation image retrieval method based on rotation-invariant texture features.
#@Zhenfeng Shao,Deren Li,Xianqiang Zhu
#t2011
#cSCIENCE CHINA Information Sciences
#index3086898
#% 
#!
  
#*Data acquisition and simulation of natural phenomena.
#@Qinping Zhao
#t2011
#cSCIENCE CHINA Information Sciences
#index3086924
#% 
#!
  
#*Mapping and overlapping based carrier frequency searching technique for rapid GNSS long PN-code acquisition.
#@Hong Li,Mingquan Lu,Zhenming Feng
#t2010
#cSCIENCE CHINA Information Sciences
#index3087018
#% 
#!
  
#*An analytical model for SMAC protocol in multi-hop wireless sensor networks.
#@Jun Luo,Ling-ge Jiang,Chen He
#t2010
#cSCIENCE CHINA Information Sciences
#index3087200
#% 
#!
  
#*Sufficient and necessary conditions for Lyapunov stability of Lorenz system and their application.
#@Qi Luo,Xiaoxin Liao,Zhigang Zeng
#t2010
#cSCIENCE CHINA Information Sciences
#index3087214
#% 
#!
  
#*An index-split Bloom filter for deep packet inspection.
#@Kun Huang,Dafang Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3086957
#% 
#!
  
#*State-of-the-art flash memory devices and post-flash emerging memories.
#@Chihyuan Lu,Hangting Lue,Yichou Chen
#t2011
#cSCIENCE CHINA Information Sciences
#index3086906
#% 
#!
  
#*An improved imaging algorithm for fixed-receiver bistatic SAR.
#@Xupu Geng,Yinghui Hu,Honghui Yan,Yanfei Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087181
#% 
#!
  
#*About the convergence rates of a class of gene expression programming.
#@Xin Du,Lixin Ding
#t2010
#cSCIENCE CHINA Information Sciences
#index3087067
#% 
#!
  
#*Anisotropic resizing and deformation preserving geometric textures.
#@Lin Chen,Xiangxu Meng
#t2010
#cSCIENCE CHINA Information Sciences
#index3087170
#% 
#!
  
#*A network coding based hybrid ARQ algorithm for wireless video broadcast.
#@Ji Lu,Chengke Wu,Song Xiao,Jianchao Du
#t2011
#cSCIENCE CHINA Information Sciences
#index3087011
#% 
#!
  
#*An improved dynamic user equipment power saving mechanism for LTE system and performance analysis.
#@Haibo Xu,Hui Tian,Bo Huang,Ping Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087126
#% 
#!
  
#*Physical modeling and spectrum spread analysis of surface clutter in forward scattering radar.
#@Teng Long,Cheng Hu,Tao Zeng,Xiaoliang Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087117
#% 
#!
  
#*Opitimization of tunneling carbon nanotube-FETs based on stair-case doping strategy.
#@Hailiang Zhou,Jiang Jiang,Minxuan Zhang,Liang Fang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087070
#% 
#!
  
#*Controllable highly regular triangulation.
#@Jin Huang,Muyang Zhang,Wenjie Pei,Wei Hua,Hujun Bao
#t2011
#cSCIENCE CHINA Information Sciences
#index3086982
#% 
#!
  
#*The normal numbers of the fuzzy systems and their classes.
#@Hongxing Li,Xuehai Yuan,Jiayin Wang,Yucheng Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087099
#% 
#!
  
#*Tsallis model-based separation of overlapped peak signals.
#@Yuanlu Li,Yingchao Zhang,Huiqiang Tang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087036
#% 
#!
  
#*Variability in nanoscale CMOS technology.
#@Kelin Kuhn
#t2011
#cSCIENCE CHINA Information Sciences
#index3086925
#% 
#!
  
#*An accessibility measure for the combined travel demand model.
#@Chao Yang,Shulin He
#t2010
#cSCIENCE CHINA Information Sciences
#index3086889
#% 
#!
  
#*Research on the application of 4-weighted fractional Fourier transform in communication system.
#@Lin Mei,Xuejun Sha,Qinwen Ran,Naitong Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087081
#% 
#!
  
#*An optimized non-unitary linear precoding design for OSTBCs.
#@Haiyang Huang,Gang Wu,Lu Lu,Shaoqian Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087039
#% 
#!
  
#*On the number of rotation symmetric Boolean functions.
#@Shaojing Fu,Chao Li,Longjiang Qu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087037
#% 
#!
  
#*Nondestructive determination of nutritional information in oilseed rape leaves using visible/near infrared spectroscopy and multivariate calibrations.
#@Fei Liu,Pengcheng Nie,Min Huang,Wenwen Kong,Yong He
#t2011
#cSCIENCE CHINA Information Sciences
#index3086907
#% 
#!
  
#*The existence of balanced (, {3, 6}, 1) difference families.
#@Dianhua Wu,Minquan Cheng,Zhilin Chen,Haipeng Luo
#t2010
#cSCIENCE CHINA Information Sciences
#index3087028
#% 
#!
  
#*Detecting malignant patients via modified boosted tree.
#@Cailing Dong,Yilong Yin,Xiukun Yang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087173
#% 
#!
  
#*Capacity bounds of transmit beamforming over MISO time-varying channels with imperfect feedback.
#@Lei Zhang,Gang Wu,Shaoqian Li
#t2010
#cSCIENCE CHINA Information Sciences
#index3087196
#% 
#!
  
#*Key parameter estimation for radar rotating object imaging with multi-aspect observations.
#@Chunmao Ye,Jia Xu,Yingning Peng,Xiutan Wang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087134
#% 
#!
  
#*The cut sets, decomposition theorems and representation theorems on intuitionistic fuzzy sets and interval valued fuzzy sets.
#@Xuehai Yuan,Hongxing Li,Kaibiao Sun
#t2011
#cSCIENCE CHINA Information Sciences
#index3086927
#% 
#!
  
#*Identifying heavy hitters in high-speed network monitoring.
#@Yu Zhang,Binxing Fang,Yongzheng Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087030
#% 
#!
  
#*Self-healing routing: failure, modeling and analysis.
#@Mingwei Xu,Qi Li,Yuan Yang,Meijia Hou,Lingtao Pan
#t2011
#cSCIENCE CHINA Information Sciences
#index3087010
#% 
#!
  
#*A mathematical model for concept granular computing systems.
#@Guofang Qiu,Jianmin Ma,Hong-Zhi Yang,Wen-Xiu Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087038
#% 
#!
  
#*Graphical interface for motion editing using procedure visualization.
#@Ji-yong Kwon,In-Kwon Lee
#t2011
#cSCIENCE CHINA Information Sciences
#index3086956
#% 
#!
  
#*Information entropy for ordinal classification.
#@Qinghua Hu,Maozu Guo,Daren Yu,Jinfu Liu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087088
#% 
#!
  
#*Low swing drivers based on charge redistribution.
#@Fengfeng Wu,Song Jia,Yuan Wang,Ganggang Zhang
#t2010
#cSCIENCE CHINA Information Sciences
#index3087066
#% 
#!
  
#*Theory and techniques of data mining in CGF behavior modeling.
#@Yunfei Yin,Guanghong Gong,Liang Han
#t2011
#cSCIENCE CHINA Information Sciences
#index3086947
#% 
#!
  
#*Application of splitting scheme and multigrid method for TV-Stokes denoising.
#@Qianshun Chang,Xuecheng Tai,Lili Xing
#t2011
#cSCIENCE CHINA Information Sciences
#index3086958
#% 
#!
  
#*A study of spaceborne SAR raw data compression error based on a statistical model of quantization interval transfer probability.
#@Xin Li,Haiming Qi,Bin Hua,Hong Lei,Weidong Yu
#t2010
#cSCIENCE CHINA Information Sciences
#index3087057
#% 
#!
  
#*Resistance switching for RRAM applications.
#@Frederick T. Chen,Heng-Yuan Lee,Yu-Sheng Chen,Yenya Hsu,Lijie Zhang,Pang-Shiu Chen,Weisu Chen,Peiyi Gu,Wenhsing Liu,Sumin Wang,et al.
#t2011
#cSCIENCE CHINA Information Sciences
#index3086976
#% 
#!
  
#*Image-based modeling of inhomogeneous single-scattering participating media.
#@Yong Hu,Yue Qi,Xin Tong
#t2010
#cSCIENCE CHINA Information Sciences
#index3087145
#% 
#!
  
#*Joint source channel VL coding/decoding for deep space communication networks based on a space trellis.
#@Weiren Wu,Juan Tu,Guofang Tu,Shaoshuai Gao,Can Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144411
#% 
#!
  
#*A new policy to solve routing conflicts in shuffle-exchange networks.
#@FangBin Ge,Min Zhao,Tao Zhang,Jianxin Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144412
#% 
#!
  
#*Variation-aware fault modeling.
#@Fabian Hopsch,Bernd Becker,Sybille Hellebrand,Ilia Polian,Bernd Straube,Wolfgang Vermeiren,Hans-Joachim Wunderlich
#t2011
#cSCIENCE CHINA Information Sciences
#index3144417
#% 
#!
  
#*Borel probabilistic and quantitative logic.
#@Hongjun Zhou,Guojun Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144422
#% 
#!
  
#*Geometric characterization of multi-input lower-triangular forms.
#@Duan Zhang,Tzyh Jong Tarn,XiongXiong He,Tao Zou
#t2011
#cSCIENCE CHINA Information Sciences
#index3144402
#% 
#!
  
#*Dynamic visual servoing of a small scale autonomous helicopter in uncalibrated environments.
#@CaiZhi Fan,YunHui Liu,BaoQuan Song,DongXiang Zhou
#t2011
#cSCIENCE CHINA Information Sciences
#index3144383
#% 
#!
  
#*Dry electrode for the measurement of biopotential signals.
#@Yu Wang,Weihua Pei,Kai Guo,Qiang Gui,XiaoQian Li,HongDa Chen,Jianhong Yang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144397
#% 
#!
  
#*Universal approximation of polygonal fuzzy neural networks in sense of K-integral norms.
#@Guijun Wang,Xiaoping Li
#t2011
#cSCIENCE CHINA Information Sciences
#index3144369
#% 
#!
  
#*Group sparse representation for image categorization and semantic video retrieval.
#@Yanan Liu,Fei Wu,Yueting Zhuang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144388
#% 
#!
  
#*Curve fitting and optimal interpolation on CNC machines based on quadratic B-splines.
#@Mei Zhang,Wei Yan,ChunMing Yuan,DingKang Wang,XiaoShan Gao
#t2011
#cSCIENCE CHINA Information Sciences
#index3144355
#% 
#!
  
#*A CFAR detector for MIMO array radar based on adaptive pulse compression-Capon filter.
#@Jian Guan,Yong Huang,You He
#t2011
#cSCIENCE CHINA Information Sciences
#index3144360
#% 
#!
  
#*Generating dense and super-resolution ISAR image by combining bandwidth extrapolation and compressive sensing.
#@Yinghui Quan,Lei Zhang,Rui Guo,Mengdao Xing,Zheng Bao
#t2011
#cSCIENCE CHINA Information Sciences
#index3144425
#% 
#!
  
#*Nonstationary clutter suppression for airborne conformal array radar.
#@Keqing Duan,Wenchong Xie,Yongliang Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144439
#% 
#!
  
#*2.5-dimensional angle potential field algorithm for the real-time autonomous navigation of outdoor mobile robots.
#@Quan Qiu,Jianda Han
#t2011
#cSCIENCE CHINA Information Sciences
#index3144374
#% 
#!
  
#*Co-design of ESD protection and UWB RF front-end ICs.
#@Xin Wang,He Tang,Lin Lin,Jian Liu,Qiang Fang,Hui Zhao,Albert Z. Wang,Zitao Shi,Siqiang Fan,Bin Zhao,Liwu Yang,Jun He,Yuhua Cheng
#t2011
#cSCIENCE CHINA Information Sciences
#index3144375
#% 
#!
  
#*Fast feature-based mode decision for 4×4 intra prediction in H.264/AVC.
#@Ping Wang,Hua Huang,Zheng Tan
#t2011
#cSCIENCE CHINA Information Sciences
#index3144368
#% 
#!
  
#*Linearly time-varying channel estimation and training power allocation for OFDM/MIMO systems using superimposed training.
#@Han Zhang,Xianhua Dai,DaRu Pan
#t2011
#cSCIENCE CHINA Information Sciences
#index3144396
#% 
#!
  
#*stability conditions for delayed neural networks with external disturbances and norm-bounded uncertainties: Delay independent and dependent criteria.
#@Choon Ki Ahn
#t2011
#cSCIENCE CHINA Information Sciences
#index3144403
#% 
#!
  
#*High-precision, fast DEM reconstruction method for spaceborne InSAR.
#@Qingsong Wang,Haifeng Huang,Zhen Dong,Anxi Yu,Diannong Liang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144354
#% 
#!
  
#*Analysis on crossover probability estimation using LDPC syndrome.
#@Yong Fang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144389
#% 
#!
  
#*Super-orthogonal space-time code design based on the trellis diagram integrated operation.
#@Jun Ao,Chunbo Ma,FaLiang Ao,GuiSheng Liao
#t2011
#cSCIENCE CHINA Information Sciences
#index3144361
#% 
#!
  
#*Survey of DHT topology construction techniques in virtual computing environments.
#@Yiming Zhang,Xicheng Lu,Dongsheng Li
#t2011
#cSCIENCE CHINA Information Sciences
#index3144382
#% 
#!
  
#*Statistical approach to weak signal detection and estimation using Duffing chaotic oscillators.
#@Tian Jin,Hua Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144410
#% 
#!
  
#*Principles, structures, and implementation of reconfigurable ternary optical processors.
#@Yi Jin,Hongjian Wang,Shan Ouyang,Yu Zhou,Yunfu Shen,Junjie Peng,Xuemin Liu
#t2011
#cSCIENCE CHINA Information Sciences
#index3144447
#% 
#!
  
#*Jamming de-chirping radar using interrupted-sampling repeater.
#@Dejun Feng,Huamin Tao,Yong Yang,Zhong Liu
#t2011
#cSCIENCE CHINA Information Sciences
#index3144419
#% 
#!
  
#*Achievable bit rates of cognitive user with Vandermonde precoder in cognitive radio network.
#@XiaoRong Xu,JianWu Zhang,BaoYu Zheng
#t2011
#cSCIENCE CHINA Information Sciences
#index3144436
#% 
#!
  
#*A novel structural modeling and analysis of VLSI interconnect with an RLC tree network system using a BG/SEBD approach.
#@RueyFong Chang,WenShiow Kao,ChenWei Chang,KuoHsiung Tseng,ShihYing Huang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144371
#% 
#!
  
#*Cyclic-delay time-reversal space-time block codes for single-carrier transmission with frequency-domain decision-feedback equalization.
#@Ang Feng,Qinye Yin,Huiming Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144362
#% 
#!
  
#*MTCrossBit: A dynamic binary translation system based on multithreaded optimization.
#@Haibing Guan,Ruhui Ma,Hongbo Yang,Yindong Yang,Liang Liu,Ying Chen
#t2011
#cSCIENCE CHINA Information Sciences
#index3144424
#% 
#!
  
#*Acquisition of time-varying 3D foot shapes from video.
#@Fei Gao,Qing Wang,Weidong Geng,Yunhe Pan
#t2011
#cSCIENCE CHINA Information Sciences
#index3144353
#% 
#!
  
#*Shared latent dynamical structure for three-dimensional human pose estimation.
#@MingLei Tong,Hong Han,Wu Zhu
#t2011
#cSCIENCE CHINA Information Sciences
#index3144390
#% 
#!
  
#*Neural integrated control for a free-floating space robot with suddenly changing parameters.
#@Wenhui Zhang,Naiming Qi,Jing Ma,Ayang Xiao
#t2011
#cSCIENCE CHINA Information Sciences
#index3144399
#% 
#!
  
#*Hybrid MDP based integrated hierarchical Q-learning.
#@Chunlin Chen,Daoyi Dong,Han-Xiong Li,Tzyh-Jong Tarn
#t2011
#cSCIENCE CHINA Information Sciences
#index3144437
#% 
#!
  
#*Fast algorithm based on triplet Markov fields for unsupervised multi-class segmentation of SAR images.
#@Yan Wu,Xin Wang,Ping Xiao,Lu Gan,Chunyan Liu,Ming Li
#t2011
#cSCIENCE CHINA Information Sciences
#index3144381
#% 
#!
  
#*Low-power design and application based on CSD optimization for a fixed coefficient multiplier.
#@Hongxia Liu,Bo Yuan
#t2011
#cSCIENCE CHINA Information Sciences
#index3144416
#% 
#!
  
#*A new heuristic algorithm for the circular packing problem with equilibrium constraints.
#@Jingfa Liu,Gang Li,Huantong Geng
#t2011
#cSCIENCE CHINA Information Sciences
#index3144444
#% 
#!
  
#*A stochastic policy search model for matching behavior.
#@ZhenBo Cheng,Yu Zhang,Zhidong Deng
#t2011
#cSCIENCE CHINA Information Sciences
#index3144363
#% 
#!
  
#*Silicon-based microelectrode arrays for stimulation and signal recording of in vitro cultured neurons.
#@Haixian Pan,Xiaoying Lü,Zhigong Wang,Tianling Ren,Tao Fang,Jie Zhang,Changjian Zhou,Ligang Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144442
#% 
#!
  
#*A class of quasi-cyclic LDPC codes from B(mod ) sequences.
#@Guohua Zhang,Xinmei Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144398
#% 
#!
  
#*Global practical tracking by output-feedback for nonlinear systems with unknown growth rate.
#@XueHua Yan,YunGang Liu
#t2011
#cSCIENCE CHINA Information Sciences
#index3144427
#% 
#!
  
#*Design and performance analysis of orthogonal coding signal in MIMO-SAR.
#@Bo Zou,Zhen Dong,Diannong Liang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144370
#% 
#!
  
#*A type of -transmitter -receiver MIMO radar array and 3D imaging theory.
#@Yutao Zhu,Yi Su
#t2011
#cSCIENCE CHINA Information Sciences
#index3144352
#% 
#!
  
#*Balanced multiple description subband coding based on multifilter banks.
#@Ning Wang,Baobin Li,Lizhong Peng
#t2011
#cSCIENCE CHINA Information Sciences
#index3144408
#% 
#!
  
#*Blake-Wilson, Johnson & Menezes protocol revisited.
#@Hai Huang,Zhenfu Cao
#t2011
#cSCIENCE CHINA Information Sciences
#index3144409
#% 
#!
  
#*Secure multi-party computation protocol for sequencing problem.
#@Chunming Tang,GuiHua Shi,Zheng-an Yao
#t2011
#cSCIENCE CHINA Information Sciences
#index3144380
#% 
#!
  
#*Immigrant schemes for evolutionary algorithms in dynamic environments: Adapting the replacement rate.
#@Xin Yu,Ke Tang,Xin Yao
#t2011
#cSCIENCE CHINA Information Sciences
#index3144373
#% 
#!
  
#*Identity based signature scheme based on cubic residues.
#@Dongsheng Xing,Zhenfu Cao,Xiaolei Dong
#t2011
#cSCIENCE CHINA Information Sciences
#index3144434
#% 
#!
  
#*Geometric double-entity model for recognizing far-near relations of clusters.
#@Kaijun Wang,Xuanhui Yan,Lifei Chen
#t2011
#cSCIENCE CHINA Information Sciences
#index3144392
#% 
#!
  
#*Micro-Doppler characteristics of sliding-type scattering center on rotationally symmetric target.
#@Liang Ma,Jin Liu,Tao Wang,YongZhen Li,XueSong Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144359
#% 
#!
  
#*High-yield performance-efficient redundancy analysis for 2D memory.
#@Tsung-Chu Huang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144364
#% 
#!
  
#*A software cascading faults model.
#@Yanheng Liu,Xuelian Liu,Jian Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144406
#% 
#!
  
#*Optimization and design of a novel prescaler and its application to GPS receivers.
#@YunFeng Yu,TianChun Ye,ChengYan Ma
#t2011
#cSCIENCE CHINA Information Sciences
#index3144401
#% 
#!
  
#*Spiking neural P systems with neuron division and budding.
#@Linqiang Pan,Gheorghe Paun,Mario J. Pérez-Jiménez
#t2011
#cSCIENCE CHINA Information Sciences
#index3144378
#% 
#!
  
#*Array errors active calibration algorithm based on instrumental sensors.
#@Ding Wang,Ying Wu
#t2011
#cSCIENCE CHINA Information Sciences
#index3144391
#% 
#!
  
#*CBCR: CBC MAC with rotating transformations.
#@Liting Zhang,Wenling Wu,Lei Zhang,Peng Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144445
#% 
#!
  
#*Selection of unitary operations in quantum secret sharing without entanglement.
#@Juan Xu,Hanwu Chen,Wenjie Liu,Zhihao Liu
#t2011
#cSCIENCE CHINA Information Sciences
#index3144351
#% 
#!
  
#*An application of the differential spread-spectrum technique in mobile underwater acoustic communication.
#@Jingwei Yin,Xiao Zhang,Liqiang Sun,Jidan Mei
#t2011
#cSCIENCE CHINA Information Sciences
#index3144421
#% 
#!
  
#*User-experience-based availability analysis model and its application in P2P storage systems.
#@Yu Wu,Zhi Yang,Zhi Qu,Zhen Xiao,Yafei Dai
#t2011
#cSCIENCE CHINA Information Sciences
#index3144426
#% 
#!
  
#*A verifiable low-level concurrent programming model based on colored Petri nets.
#@Shengyuan Wang,Yuan Dong
#t2011
#cSCIENCE CHINA Information Sciences
#index3144435
#% 
#!
  
#*Large-scale P2PVOD system: Focusing on clients.
#@Yan Huang,Ke Xu,Haitao Li,Yang Cao,Xin Yao
#t2011
#cSCIENCE CHINA Information Sciences
#index3144415
#% 
#!
  
#*Diversity order of multiuser two-way relay networks with beamforming over Nakagami- fading channels.
#@Hui Guo,Jianhua Ge
#t2011
#cSCIENCE CHINA Information Sciences
#index3144387
#% 
#!
  
#*Enhancing encoding capacity of combinational test stimulus decompressors.
#@Nader Alawadhi,Ozgur Sinanoglu,Mohammed Al-Mulla
#t2011
#cSCIENCE CHINA Information Sciences
#index3144440
#% 
#!
  
#*Doubly selective channel estimation for subband OFDMA using basis expansion models.
#@Donghua Chen,Hongbing Qiu
#t2011
#cSCIENCE CHINA Information Sciences
#index3144418
#% 
#!
  
#*Performance analysis of network coding for multicast relay system over Nakagami-m fading channels.
#@Rui Zhao,Lvxi Yang,Yongming Huang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144372
#% 
#!
  
#*Finding and evaluating the community structure in semantic peer-to-peer overlay networks.
#@Hanhua Chen,Hai Jin
#t2011
#cSCIENCE CHINA Information Sciences
#index3144400
#% 
#!
  
#*Fractional Fourier transform based transmitted reference scheme for UWB communications.
#@Di Lin,Xuanli Wu,Xuejun Sha
#t2011
#cSCIENCE CHINA Information Sciences
#index3144386
#% 
#!
  
#*Estimation of wall parameters based on range profiles.
#@Xin Li,Daoxiang An,Xiaotao Huang,Shirui Peng
#t2011
#cSCIENCE CHINA Information Sciences
#index3144365
#% 
#!
  
#*Asynchronous cooperative communication systems: A survey on signal designs.
#@HuiMing Wang,XiangGen Xia
#t2011
#cSCIENCE CHINA Information Sciences
#index3144358
#% 
#!
  
#*Quasi-physical global optimization method for solving the equal circle packing problem.
#@Wenqi Huang,Tao Ye
#t2011
#cSCIENCE CHINA Information Sciences
#index3144393
#% 
#!
  
#*A novel radio resource allocation scheme for IEEE 802.16e multicell networks.
#@Jian Liu,Keping Long,Jie Xu
#t2011
#cSCIENCE CHINA Information Sciences
#index3144407
#% 
#!
  
#*Image City sharing platform and its typical applications.
#@ZhenFeng Shao,DeRen Li
#t2011
#cSCIENCE CHINA Information Sciences
#index3144446
#% 
#!
  
#*High frequency performance of nano-scale ultra-thin-body Schottky-barrier n-MOSFETs.
#@Gang Du,XiaoYan Liu,RuQi Han
#t2011
#cSCIENCE CHINA Information Sciences
#index3144443
#% 
#!
  
#*A new complexity metric for FH/SS sequences using fuzzy entropy.
#@Xiaojun Chen,Jiang Bo Si,Zan Li,Jueping Cai,BaoMing Bai
#t2011
#cSCIENCE CHINA Information Sciences
#index3144432
#% 
#!
  
#*Experimental investigation of MIMO relay channels statistics and capacity based on wideband outdoor measurements at 2.35 GHz.
#@Xin Nie,Jianhua Zhang,Zemin Liu,Ping Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144429
#% 
#!
  
#*On power allocation for a cognitive radio network with hybrid spectrum sharing.
#@Jing Zhang,Hongbo Zhu
#t2011
#cSCIENCE CHINA Information Sciences
#index3144414
#% 
#!
  
#*Multi-user MIMO downlink eigen-mode transmission over jointly correlated MIMO channels.
#@Xiao Li,Shi Jin,Xiqi Gao
#t2011
#cSCIENCE CHINA Information Sciences
#index3144379
#% 
#!
  
#*filling orbicular -sided holes using periodic B-spline surfaces.
#@Kan-Le Shi,Jun-Hai Yong,Jia-Guang Sun,Jean-Claude Paul
#t2011
#cSCIENCE CHINA Information Sciences
#index3144385
#% 
#!
  
#*Effective capacity region of two-user opportunistic spectrum access.
#@Yuhua Xu,JinLong Wang,QiHui Wu
#t2011
#cSCIENCE CHINA Information Sciences
#index3144413
#% 
#!
  
#*ASLOP: A field-access affinity-based structure data layout optimizer.
#@JiaNian Yan,JiangZhou He,WenGuang Chen,Pen-Chung Yew,WeiMin Zheng
#t2011
#cSCIENCE CHINA Information Sciences
#index3144376
#% 
#!
  
#*Improved multi-pass fast correlation attacks with applications.
#@Bin Zhang,Dengguo Feng
#t2011
#cSCIENCE CHINA Information Sciences
#index3144357
#% 
#!
  
#*Paillier's trapdoor function hides Θ() bits.
#@Dong Su,Kewei Lv
#t2011
#cSCIENCE CHINA Information Sciences
#index3144433
#% 
#!
  
#*Geometric construction of energy-minimizing Béezier curves.
#@Gang Xu,Guozhao Wang,Wenyu Chen
#t2011
#cSCIENCE CHINA Information Sciences
#index3144438
#% 
#!
  
#*-th moment exponential stability of stochastic differential equations with impulse effect.
#@Lijuan Shen,Jitao Sun
#t2011
#cSCIENCE CHINA Information Sciences
#index3144423
#% 
#!
  
#*Model-based approach for available bandwidth prediction in multi-hop wireless networks.
#@Haitao Zhao,Shan Wang,Jibo Wei,An Song,Ying Li
#t2011
#cSCIENCE CHINA Information Sciences
#index3144367
#% 
#!
  
#*Computing rarity on uncertain data.
#@Cheqing Jin,Minqi Zhou,Aoying Zhou
#t2011
#cSCIENCE CHINA Information Sciences
#index3144428
#% 
#!
  
#*Range ambiguity resolving of HPRF radar based on hybrid filter.
#@Na Wang,Guo-Hong Wang,JiaYou Zeng,You He
#t2011
#cSCIENCE CHINA Information Sciences
#index3144356
#% 
#!
  
#*Zero-knowledge proofs of retrievability.
#@Yan Zhu,Huaixi Wang,Zexing Hu,Gail-Joon Ahn,Hongxin Hu
#t2011
#cSCIENCE CHINA Information Sciences
#index3144404
#% 
#!
  
#*M-ary CDMA multiuser underwater acoustic communication and its experimental results.
#@ChengBing He,Jianguo Huang,ZhengHua Yan,QunFei Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144384
#% 
#!
  
#*A generalized mean shift tracking algorithm.
#@Jianjun Chen,Suofei Zhang,Guocheng An,Zhenyang Wu
#t2011
#cSCIENCE CHINA Information Sciences
#index3144430
#% 
#!
  
#*A new approach to adaptive control design without overparametrization for a class of uncertain nonlinear systems.
#@Jian Zhang,YunGang Liu
#t2011
#cSCIENCE CHINA Information Sciences
#index3144395
#% 
#!
  
#*Capability of evolutionary cryptosystems against differential cryptanalysis.
#@Huanguo Zhang,Chunlei Li,Ming Tang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144405
#% 
#!
  
#*Efficient multi-level fault simulation of HW/SW systems for structural faults.
#@Rafal Baranowski,Stefano Di Carlo,Nadereh Hatami,Michael E. Imhof,Michael A. Kochte,Paolo Prinetto,Hans-Joachim Wunderlich,Christian G. Zoellin
#t2011
#cSCIENCE CHINA Information Sciences
#index3144366
#% 
#!
  
#*Strain coefficient measurement for the (100) uniaxial strain silicon by Raman spectroscopy.
#@BaoXing Duan,YinTang Yang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144394
#% 
#!
  
#*Sequence-based localization algorithm with improved correlation metric and dynamic centroid.
#@Ying Yu,Chunxiao Jiang,Xiaojie Zhao,Lijun Yun,Zhihua Li,Yong Ren
#t2011
#cSCIENCE CHINA Information Sciences
#index3144448
#% 
#!
  
#*A multi-layer grid approach for fluid animation.
#@Jie Tan,XuBo Yang,Xin Zhao,ZhanXin Yang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144431
#% 
#!
  
#*Giant complete automaton for uncertain multiple string matching and its high speed construction algorithm.
#@Yue Hu,Qingshi Gao,Li Guo,PeiFeng Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144420
#% 
#!
  
#*Strategies for scalable symbolic execution-driven test generation for programs.
#@Saparya Krishnamoorthy,Michael S. Hsiao,Loganathan Lingappan
#t2011
#cSCIENCE CHINA Information Sciences
#index3144377
#% 
#!
  
#*Gaze estimation in a gaze tracking system.
#@Chuang Zhang,Jian-Nan Chi,Zhaohui Zhang,Xiaoliang Gao,Tao Hu,Zhiliang Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3144441
#% 
#!
  
#*New method for measuring the degree of conflict among general basic probability assignments.
#@You He,LiFang Hu,Xin Guan,Yong Deng,Deqiang Han
#t2012
#cSCIENCE CHINA Information Sciences
#index3258306
#% 
#!
  
#*Terahertz switch and polarization controller based on photonic crystal fiber.
#@Yu Hou,Fei Fan,Xianghui Wang,Guohua Zhao,Shengjiang Chang
#t2012
#cSCIENCE CHINA Information Sciences
#index3258311
#% 
#!
  
#*Terahertz detectors based on superconducting hot electron bolometers.
#@Yi Jiang,Biaobing Jin,Weiwei Xu,Lin Kang,Jian Chen,Peiheng Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3258283
#% 
#!
  
#*Part-based on-road vehicle detection using hidden random field.
#@XueTao Zhang,YongJian He,Fei Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3258310
#% 
#!
  
#*High current density ScO-W matrix dispenser cathode.
#@Jinshu Wang,Xizhu Zhang,Wei Liu,Yiman Wang,Meiling Zhou,Tieyong Zuo
#t2012
#cSCIENCE CHINA Information Sciences
#index3258292
#% 
#!
  
#*Right-and-left visual field stimulation: A frequency and space mixed coding method for SSVEP based brain-computer interface.
#@Zheng Yan,XiaoRong Gao,ShangKai Gao
#t2011
#cSCIENCE CHINA Information Sciences
#index3258282
#% 
#!
  
#*Research progress in terahertz quantum cascade lasers.
#@Juncheng Cao
#t2012
#cSCIENCE CHINA Information Sciences
#index3258316
#% 
#!
  
#*THz-TDS signal analysis and substance identification via the conformal split.
#@Weixin Xie,Jing Li,Jihong Pei
#t2012
#cSCIENCE CHINA Information Sciences
#index3258347
#% 
#!
  
#*Salient region detection and segmentation for general object recognition and image understanding.
#@Tiejun Huang,YongHong Tian,Jia Li,Haonan Yu
#t2011
#cSCIENCE CHINA Information Sciences
#index3258301
#% 
#!
  
#*Feature extraction without phase error for THz reflective spectroscopy.
#@Liangliang Zhang,Hua Zhong,Dechong Zhu,Jian Zuo,Cunlin Zhang
#t2012
#cSCIENCE CHINA Information Sciences
#index3258346
#% 
#!
  
#*Assessment and improvement of autocorrelation performance of chaotic sequences using a phase space method.
#@Bin Chen
#t2011
#cSCIENCE CHINA Information Sciences
#index3258329
#% 
#!
  
#*Metallic photonic crystals for terahertz tunable filters.
#@Fei Fan,Shengjiang Chang,Yu Hou
#t2012
#cSCIENCE CHINA Information Sciences
#index3258321
#% 
#!
  
#*Theoretical investigation of a terahertz transmission line in bipolar coordinate system.
#@Renbin Zhong,Jun Zhou,Weihao Liu,Shenggang Liu
#t2012
#cSCIENCE CHINA Information Sciences
#index3258348
#% 
#!
  
#*Spray and forward: Efficient routing based on the Markov location prediction model for DTNs.
#@Fei Dang,Xiaolong Yang,Keping Long
#t2012
#cSCIENCE CHINA Information Sciences
#index3258318
#% 
#!
  
#*A novel adaptive V-BLAST algorithm based on subspace tracking and Hermitian matrix perturbation theorem.
#@Wangyong Lv,Huiqi Wang,Hong Ma,Yongdao Zhou
#t2012
#cSCIENCE CHINA Information Sciences
#index3258341
#% 
#!
  
#*Bifurcation stabilization of nonlinear systems by dynamic output feedback with application to rotating stall control.
#@Pengnian Chen,Huashu Qin,Yong Wang,Yiguang Hong
#t2012
#cSCIENCE CHINA Information Sciences
#index3258313
#% 
#!
  
#*Surface electromagnetic modes contribution to the anomalous terahertz transmission through double-layered metal hole array.
#@Lei Rao,Dongxiao Yang
#t2012
#cSCIENCE CHINA Information Sciences
#index3258332
#% 
#!
  
#*Parameter estimation of moving targets in the SAR system with a low PRF sampling rate.
#@Yan Liu,Qisong Wu,Guangcai Sun,Mengdao Xing,Baochang Liu,Zheng Bao
#t2012
#cSCIENCE CHINA Information Sciences
#index3258294
#% 
#!
  
#*THz source based on optical Cherenkov radiation.
#@Jianquan Yao,Pengxiang Liu,Degang Xu,Yingjin Lv,Da Lv
#t2012
#cSCIENCE CHINA Information Sciences
#index3258304
#% 
#!
  
#*A low power and small area all digital delay-locked loop based on ring oscillator architecture.
#@Jiapeng Zheng,Wei Li,Xueqing Lu,Yuhua Cheng,Yangyuan Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3258290
#% 
#!
  
#*Monaural voiced speech segregation based on elaborate harmonic grouping strategies.
#@Wenju Liu,Xueliang Zhang,Wei Jiang,Peng Li,Bo Xu
#t2011
#cSCIENCE CHINA Information Sciences
#index3258335
#% 
#!
  
#*Modeling grammatical evolution by automaton.
#@Pei He,Colin G. Johnson,HouFeng Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3258349
#% 
#!
  
#*A flexible framework for HMM based noise robust speech recognition using generalized parametric space polynomial regression.
#@Ning Cheng,Xunying Liu,Lan Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3258340
#% 
#!
  
#*Black-box testing based on colorful taint analysis.
#@Kai Chen,Dengguo Feng,Purui Su,Yingjun Zhang
#t2012
#cSCIENCE CHINA Information Sciences
#index3258285
#% 
#!
  
#*Multispectral image edge detection via Clifford gradient.
#@Chen Xu,Hui Liu,Wenming Cao,Jiqiang Feng
#t2012
#cSCIENCE CHINA Information Sciences
#index3258307
#% 
#!
  
#*Memristive crossbar array with applications in image processing.
#@Xiaofang Hu,Shukai Duan,Lidan Wang,Xiaofeng Liao
#t2012
#cSCIENCE CHINA Information Sciences
#index3258323
#% 
#!
  
#*Angular distribution of terahertz emission from laser interactions with solid targets.
#@Fei Du,Chun Li,Mulin Zhou,Weimin Wang,Luning Su,Yi Zheng,Xulei Ge,Yutong Li,Jinglong Ma,Xiaolong Liu,Lu Zhang,Zhengming Sheng,Liming Chen,Xin Lu,Quanli Dong,Zhaohua Wang,Zhiyi Wei,Jie Zhang
#t2012
#cSCIENCE CHINA Information Sciences
#index3258312
#% 
#!
  
#*Editor's note.
#@Shenggang Liu,Weixin Xie
#t2012
#cSCIENCE CHINA Information Sciences
#index3258327
#% 
#!
  
#*Towards estimating expected sizes of probabilistic skylines.
#@YongTao Yang,YiJie Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3258302
#% 
#!
  
#*Spatio-temporal pattern analysis of single-trial EEG signals recorded during visual object recognition.
#@Changming Wang,XiaoPing Hu,Li Yao,Shi Xiong,Jia-Cai Zhang
#t2011
#cSCIENCE CHINA Information Sciences
#index3258284
#% 
#!
  
#*THz spectra of parabens at low temperature.
#@Guozhong Zhao,He Wang,Liming Liu,Xiaoyan Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3258305
#% 
#!
  
#*Painting patches: Reducing flicker in painterly re-rendering of video.
#@Song-Hai Zhang,Qiang Tong,Shi-Min Hu,Ralph Martin
#t2011
#cSCIENCE CHINA Information Sciences
#index3258343
#% 
#!
  
#*An omnidirectional mobile robot.
#@ChangLong Ye,ShuGen Ma,Li Hui
#t2011
#cSCIENCE CHINA Information Sciences
#index3258330
#% 
#!
  
#*Fast parallel algorithms for discrete Gabor expansion and transform based on multirate filtering.
#@Liang Tao,Juan-juan Gu
#t2012
#cSCIENCE CHINA Information Sciences
#index3258350
#% 
#!
  
#*A refined coherent point drift (CPD) algorithm for point set registration.
#@Peng Wang,Ping Wang,Zhiguo Qu,Yinghui Gao,Zhenkang Shen
#t2011
#cSCIENCE CHINA Information Sciences
#index3258315
#% 
#!
  
#*Deterministic secure quantum communication without unitary operation based on high-dimensional entanglement swapping.
#@Zhihao Liu,Hanwu Chen,Wenjie Liu,Juan Xu,Zhiqiang Li
#t2012
#cSCIENCE CHINA Information Sciences
#index3258299
#% 
#!
  
#*A novel distortion elimination method of power amplifier in wideband OFDM system.
#@Zhiyuan Ren,Hailin Zhang
#t2012
#cSCIENCE CHINA Information Sciences
#index3258333
#% 
#!
  
#*Development of superconducting mixers for THz astronomy.
#@Shengcai Shi
#t2012
#cSCIENCE CHINA Information Sciences
#index3258324
#% 
#!
  
#*Improvement in detection with forward scattering radar.
#@Raja Syamsul Azmir Raja Abdullah,Mohd Fadlee A. Rasid,M. Khalafa Mohamed
#t2011
#cSCIENCE CHINA Information Sciences
#index3258320
#% 
#!
  
#*Breakdown voltage analysis for the new RESURF AlGaN/GaN HEMTs.
#@BaoXing Duan,YinTang Yang
#t2012
#cSCIENCE CHINA Information Sciences
#index3258297
#% 
#!
  
#*R-calculus without the cut rule.
#@Jie Luo,Wei Li
#t2011
#cSCIENCE CHINA Information Sciences
#index3258325
#% 
#!
  
#*Multi-channel SAR imaging based on distributed compressive sensing.
#@Yueguan Lin,Bingchen Zhang,Hai Jiang,Wen Hong,Yirong Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3258289
#% 
#!
  
#*Novel research on main-lobe jamming polarization suppression technology.
#@Huanyao Dai,Xuesong Wang,Yong Liu,Yongzhen Li,Shunping Xiao
#t2012
#cSCIENCE CHINA Information Sciences
#index3258342
#% 
#!
  
#*Layer-by-layer assembly carbon nanotubes thin film based gas sensors for ammonia detection.
#@Ping Sun,YaDong Jiang,GuangZhong Xie,XiaoSong Du,Xian Li,Jia Hu
#t2011
#cSCIENCE CHINA Information Sciences
#index3258351
#% 
#!
  
#*Adaptive fuzzy decentralized control for nonlinear large-scale systems based on high-gain observer.
#@Shaocheng Tong,Chang'E Ren,Yongming Li
#t2012
#cSCIENCE CHINA Information Sciences
#index3258296
#% 
#!
  
#*Three-dimensional subwavelength components utilizing THz surface plasmons.
#@Yongjin Zhou,Quan Jiang,Tiejun Cui
#t2012
#cSCIENCE CHINA Information Sciences
#index3258338
#% 
#!
  
#*Numerical optimization method for HJI equations derived from robust receding horizon control schemes and controller design.
#@Chonghui Song,Chunyuan Bian,Xie Zhang,Chenglong Shi
#t2012
#cSCIENCE CHINA Information Sciences
#index3258287
#% 
#!
  
#*A novel logic-based automatic approach to constructing compliant security policies.
#@Yibao Bao,Lihua Yin,Binxing Fang,Li Guo
#t2012
#cSCIENCE CHINA Information Sciences
#index3258328
#% 
#!
  
#*A low-noise fully-differential CMOS preamplifier for neural recording applications.
#@Xu Zhang,Weihua Pei,Beiju Huang,Ning Guan,Hongda Chen
#t2012
#cSCIENCE CHINA Information Sciences
#index3258286
#% 
#!
  
#*Data classification from the inverse power gravitation.
#@Huarong Xu,Xiaodong Wang,Zhiqiang Zeng,Qiu Fang
#t2012
#cSCIENCE CHINA Information Sciences
#index3258317
#% 
#!
  
#*Process optimization of plasma nitridation SiON for 65 nm node gate dielectrics.
#@YanDong He,Xing Zhang,Yangyuan Wang
#t2011
#cSCIENCE CHINA Information Sciences
#index3258293
#% 
#!
  
#*Research on heart sound identification technology.
#@Xiefeng Cheng,Yong Ma,Chen Liu,Xuejun Zhang,Yufeng Guo
#t2012
#cSCIENCE CHINA Information Sciences
#index3258314
#% 
#!
  
#*Evolutionary cryptography against multidimensional linear cryptanalysis.
#@Huanguo Zhang,Chunlei Li,Ming Tang
#t2011
#cSCIENCE CHINA Information Sciences
#index3258344
#% 
#!
  
#*Dual-turbo receiver architecture for turbo coded MIMO-OFDM systems.
#@Wenjin Wang,Xiqi Gao,Xiaofu Wu,Xiaohu You,Chunming Zhao,Kai-Kit Wong
#t2012
#cSCIENCE CHINA Information Sciences
#index3258339
#% 
#!
  
#*Price-based interference avoidance game in the Gaussian interference channel.
#@Zhenhai Jing,Baoming Bai,Xiao Ma
#t2012
#cSCIENCE CHINA Information Sciences
#index3258300
#% 
#!
  
#*Terahertz radiation sources based on free electron lasers and their applications.
#@Ping Tan,Jiang Huang,Kaifeng Liu,Yongqian Xiong,Mingwu Fan
#t2012
#cSCIENCE CHINA Information Sciences
#index3258322
#% 
#!
  
#*Modeling and characteristic analysis of underwater acoustic signal of the accelerating propeller.
#@Yuan Feng,Ran Tao,Yue Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3258303
#% 
#!
  
#*Improved results on the probabilistic theory of the joint linear complexity of multisequences.
#@Harald Niederreiter,Michael Vielhaber,Li-Ping Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3258331
#% 
#!
  
#*Achieve load balancing with a dynamic re-routing CICQ switching scheme.
#@Hongchao Hu,Yunfei Guo,Peng Yi,Julong Lan
#t2012
#cSCIENCE CHINA Information Sciences
#index3258326
#% 
#!
  
#*An integrated quantum secure communication system.
#@Wenchao Dai,Yuan Lu,Jun Zhu,Guihua Zeng
#t2011
#cSCIENCE CHINA Information Sciences
#index3258309
#% 
#!
  
#*Perfect reconstruction image modulation based on BEMD and quaternionic analytic signals.
#@Lihong Qiao,KaiFu Niu,Ning Wang,Lizhong Peng
#t2011
#cSCIENCE CHINA Information Sciences
#index3258298
#% 
#!
  
#*H 2/H ∞ control of networked control system with random time delays.
#@Li Qiu,BuGong Xu,ShanBin Li
#t2011
#cSCIENCE CHINA Information Sciences
#index3258336
#% 
#!
  
#*A formal semantics for program debugging.
#@Wei Li,Ning Li
#t2012
#cSCIENCE CHINA Information Sciences
#index3258291
#% 
#!
  
#*Asymptotic SEP of MIMO beamforming in two-hop AF relaying systems.
#@Youhua Fu,Yujie Han,Lvxi Yang,Wei-Ping Zhu,Chen Liu
#t2012
#cSCIENCE CHINA Information Sciences
#index3258334
#% 
#!
  
#*Error exponents for two-hop Gaussian multiple source-destination relay channels.
#@Pan-liang Deng,Yuanan Liu,Gang Xie,Xiaoyu Wang,Bihua Tang,Jianfeng Sun
#t2012
#cSCIENCE CHINA Information Sciences
#index3258295
#% 
#!
  
#*Editor's note.
#@
#t2011
#cSCIENCE CHINA Information Sciences
#index3258345
#% 
#!
  
#*Dual queues cache replacement algorithm based on sequentiality detection.
#@Nong Xiao,Yingjie Zhao,Fang Liu,Zhiguang Chen
#t2012
#cSCIENCE CHINA Information Sciences
#index3258319
#% 
#!
  
#*Dynamic call and connection admission control in automatically switched optical network for grid computing applications.
#@Lei Liu,Hongxiang Guo,Xiaobin Hong,Jian Wu,Jintong Lin
#t2012
#cSCIENCE CHINA Information Sciences
#index3258308
#% 
#!
  
#*Stable multi-label boosting for image annotation with structural feature selection.
#@Yueting Zhuang,Yahong Han,Fei Wu,JiaCheng Yang
#t2011
#cSCIENCE CHINA Information Sciences
#index3258288
#% 
#!
  
#*Theory and verification of operator design methodology.
#@Ziyi Hu,Yong Zhao,Xin'an Wang,Ru Huang,Teng Wang,Xing Zhang
#t2012
#cSCIENCE CHINA Information Sciences
#index3258337
#% 
#!
  
#*Video motion stitching using trajectory and position similarities.
#@Xiaowu Chen,Qing Li,Xin Li,Qinping Zhao
#t2012
#cSCIENCE CHINA Information Sciences
#index3316789
#% 
#!
  
#*On the sensor order in sequential integrated probability data association filter.
#@Yang Wang,Zhongliang Jing,Shiqiang Hu,Hongjian Zhang,Jingjing Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3316797
#% 
#!
  
#*An algorithm for high precision attitude determination when using low precision sensors.
#@Lu Cao,Xiaoqian Chen,Tao Sheng
#t2012
#cSCIENCE CHINA Information Sciences
#index3316780
#% 
#!
  
#*Integrated optimization methods in multisensor decision and estimation fusion.
#@Yingting Luo,Xiaojing Shen,Yunmin Zhu
#t2012
#cSCIENCE CHINA Information Sciences
#index3316778
#% 
#!
  
#*A multi-cue mean-shift target tracking approach based on fuzzified region dynamic image fusion.
#@Gang Xiao,Xiao Yun,Jianmin Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3316792
#% 
#!
  
#*Estimation of convergence rate for multi-regression learning algorithm.
#@Zongben Xu,Yongquan Zhang,Feilong Cao
#t2012
#cSCIENCE CHINA Information Sciences
#index3316791
#% 
#!
  
#*The optimization of replica distribution in the unstructured overlays.
#@Guofu Feng,Wenzhong Li,Sanglu Lu,Daoxu Chen,Rajkumar Buyya
#t2012
#cSCIENCE CHINA Information Sciences
#index3316777
#% 
#!
  
#*Fusion tracking in color and infrared images using joint sparse representation.
#@Huaping Liu,Fuchun Sun
#t2012
#cSCIENCE CHINA Information Sciences
#index3316783
#% 
#!
  
#*Joint spatial registration and multi-target tracking using an extended PM-CPHD filter.
#@Feng Lian,Chongzhao Han,Weifeng Liu,Jing Liu,Xianghui Yuan
#t2012
#cSCIENCE CHINA Information Sciences
#index3316784
#% 
#!
  
#*CUDA-Zero: a framework for porting shared memory GPU applications to multi-GPUs.
#@Dehao Chen,Wenguang Chen,Weimin Zheng
#t2012
#cSCIENCE CHINA Information Sciences
#index3316794
#% 
#!
  
#*A dual-kernel-based tracking approach for visual target.
#@Canlong Zhang,Zhongliang Jing,Bo Jin,Zhixin Li
#t2012
#cSCIENCE CHINA Information Sciences
#index3316781
#% 
#!
  
#*A new intelligent prediction system model-the compound pyramid model.
#@Bingru Yang,Wu Qu,Lijun Wang,Ying Zhou
#t2012
#cSCIENCE CHINA Information Sciences
#index3316779
#% 
#!
  
#*A fast successive over-relaxation algorithm for force-directed network graph drawing.
#@Yongxian Wang,Zhenghua Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3316793
#% 
#!
  
#*Achieving fair service with a hybrid scheduling scheme for CICQ switches.
#@Hongchao Hu,Yunfei Guo,Peng Yi,Julong Lan
#t2012
#cSCIENCE CHINA Information Sciences
#index3316782
#% 
#!
  
#*RST transforms resistant image watermarking based on centroid and sector-shaped partition.
#@Yao Zhao,Rongrong Ni,Zhenfeng Zhu
#t2012
#cSCIENCE CHINA Information Sciences
#index3316787
#% 
#!
  
#*Complexity of synthesis of composite service with correctness guarantee.
#@Ting Deng,Jinpeng Huai,Tianyu Wo
#t2012
#cSCIENCE CHINA Information Sciences
#index3316796
#% 
#!
  
#*Data fusion for target tracking in wireless sensor networks using quantized innovations and Kalman filtering.
#@Jian Xu,Jianxun Li,Sheng Xu
#t2012
#cSCIENCE CHINA Information Sciences
#index3316795
#% 
#!
  
#*Some notes on betting commitment distance in evidence theory.
#@Deqiang Han,Yong Deng,Chongzhao Han,Yi Yang
#t2012
#cSCIENCE CHINA Information Sciences
#index3316785
#% 
#!
  
#*Globally optimal distributed Kalman filtering fusion.
#@Xiaojing Shen,Yingting Luo,Yunmin Zhu,Enbin Song
#t2012
#cSCIENCE CHINA Information Sciences
#index3316790
#% 
#!
  
#*A new DSmT combination rule in open frame of discernment and its application.
#@Chenglin Wen,Xiaobin Xu,Haina Jiang,Zhe Zhou
#t2012
#cSCIENCE CHINA Information Sciences
#index3316788
#% 
#!
  
#*Pan-sharpening: a fast variational fusion approach.
#@Zeming Zhou,Yuanxiang Li,Hanqing Shi,Ning Ma,Ji Shen
#t2012
#cSCIENCE CHINA Information Sciences
#index3316786
#% 
#!
  
#*Adaptive detection for distributed targets in Gaussian noise with Rao and Wald tests.
#@Xiaofei Shuai,Lingjiang Kong,Jianyu Yang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371105
#% 
#!
  
#*Power minimization with derivative constraints for high dynamic GPS interference suppression.
#@RenBiao Wu,Chan Li,Dan Lu
#t2012
#cSCIENCE CHINA Information Sciences
#index3371164
#% 
#!
  
#*Design of UWB bandpass filter with dual notched bands.
#@Qingxin Chu,Xukun Tian
#t2012
#cSCIENCE CHINA Information Sciences
#index3371148
#% 
#!
  
#*A logistic regression model for Semantic Web service matchmaking.
#@Dengping Wei,Ting Wang,Ji Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371166
#% 
#!
  
#*Device-physics-based analytical model for SET pulse in sub-100 nm bulk CMOS Process.
#@Junrui Qin,Shuming Chen,Biwei Liu,Bin Liang,Jianjun Chen
#t2012
#cSCIENCE CHINA Information Sciences
#index3371175
#% 
#!
  
#*Performance analysis of peak cancellation in OFDM systems.
#@Yue Xiao,Wenling Bai,Lilin Dan,Gang Wu,Shaoqian Li
#t2012
#cSCIENCE CHINA Information Sciences
#index3371112
#% 
#!
  
#*A framework for multi-robot motion planning from temporal logic specifications.
#@T. John Koo,Rongqing Li,Michael Melholt Quottrup,Charles A. Clifton,Roozbeh Izadi-Zamanabadi,Thomas Bak
#t2012
#cSCIENCE CHINA Information Sciences
#index3371140
#% 
#!
  
#*Weak key analysis for chaotic cipher based on randomness properties.
#@Ruming Yin,Jian Wang,Jian Yuan,Xiuming Shan,Xiqin Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371098
#% 
#!
  
#*Establishment of a function embodiment knowledge base for supporting service design.
#@Yutaro Nemoto,Fumiya Akasaka,Ryosuke Chiba,Yoshiki Shimomura
#t2012
#cSCIENCE CHINA Information Sciences
#index3371130
#% 
#!
  
#*Bitstream decoding and SEU-induced failure analysis in SRAM-based FPGAs.
#@Zhongming Wang,Zhibin Yao,Hongxia Guo,Min Lv
#t2012
#cSCIENCE CHINA Information Sciences
#index3371113
#% 
#!
  
#*Maximal effective baseline for polarimetric interferometric SAR forest height estimation.
#@Yong-Sheng Zhou,Wen Hong,Yanping Wang,Yirong Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3371095
#% 
#!
  
#*The upper bound of the minimal number of hidden neurons for the parity problem in binary neural networks.
#@Yang Lu,Juan Yang,Qiang Wang,ZhenJin Huang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371163
#% 
#!
  
#*A characterization of solvability for a class of networks.
#@Chen Yuan,Haibin Kan
#t2012
#cSCIENCE CHINA Information Sciences
#index3371106
#% 
#!
  
#*An adaptive control with optimal disturbances rejection.
#@ShengPing Li,YingHui Fan
#t2012
#cSCIENCE CHINA Information Sciences
#index3371147
#% 
#!
  
#*Design and performance of dual-band high temperature superconducting filter.
#@Laiyun Ji,Jie Ma,Jun Sun,Lang Wang,Yanqi Li,Bin Liu
#t2012
#cSCIENCE CHINA Information Sciences
#index3371162
#% 
#!
  
#*Human knowledge acquisition from 3D interaction in virtual environments.
#@Cheng Cheng,Ru Jiang,Xuemei Dong
#t2012
#cSCIENCE CHINA Information Sciences
#index3371158
#% 
#!
  
#*Seamlet carving for shape-aware image resizing.
#@Xiao Lin,Bin Sheng,Lizhuang Ma,Yang Shen,Zhihua Chen
#t2012
#cSCIENCE CHINA Information Sciences
#index3371141
#% 
#!
  
#*A novel STAP method for the detection of fast air moving targets from high speed platform.
#@RenBiao Wu,QiongQiong Jia,Hai Li
#t2012
#cSCIENCE CHINA Information Sciences
#index3371149
#% 
#!
  
#*Polar differential power attacks and evaluation.
#@Ming Tang,Zhenlong Qiu,Si Gao,Mu Yi,Shubo Liu,Huanguo Zhang,Yingzhen Jin
#t2012
#cSCIENCE CHINA Information Sciences
#index3371122
#% 
#!
  
#*Fabrication and characteristics of ZnO thin films deposited by RF sputtering on plastic substrates for flexible display.
#@Dedong Han,Yi Wang,Shengdong Zhang,Lei Sun,Ruqi Han,Satoru Matsumoto,Yuji Ino
#t2012
#cSCIENCE CHINA Information Sciences
#index3371177
#% 
#!
  
#*Improvements on voltage-resistant performance of bipolar static induction transistor (BSIT) with buried gate structure.
#@YongShun Wang,JingJing Feng,ChunJuan Liu,ZiTing Wang,ZaiXing Wang,CaiZhen Zhang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371097
#% 
#!
  
#*An improved approach to the efficient construction of and search operations in motion graphs.
#@Yan Gao,Zhihua Chen,Mingang Chen,Yang Shen
#t2012
#cSCIENCE CHINA Information Sciences
#index3371128
#% 
#!
  
#*Data-aided synchronization algorithm dispensing with searching procedures for UWB communications.
#@Zhiyuan Ren,Ting Jiang,Yi Zhong,Chenglin Zhao
#t2012
#cSCIENCE CHINA Information Sciences
#index3371119
#% 
#!
  
#*Blind estimation of multipath delays in OFDM systems.
#@Bin Sheng,Xiaohu You
#t2012
#cSCIENCE CHINA Information Sciences
#index3371142
#% 
#!
  
#*Accountable authority key policy attribute-based encryption.
#@Yongtao Wang,Kefei Chen,Yu Long,Zhaohui Liu
#t2012
#cSCIENCE CHINA Information Sciences
#index3371157
#% 
#!
  
#*P2P traffic optimization.
#@Guoqiang Zhang,Mingdong Tang,Suqi Cheng,Guoqing Zhang,Haibin Song,Jiguang Cao,Jing Yang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371114
#% 
#!
  
#*A particle-based method for granular flow simulation.
#@Yuanzhang Chang,Kai Bao,Jian Zhu,Enhua Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3371155
#% 
#!
  
#*Efficient video cutout based on adaptive multilevel banded method.
#@Mingang Chen,BoCong Sui,Yan Gao,Lizhuang Ma
#t2012
#cSCIENCE CHINA Information Sciences
#index3371121
#% 
#!
  
#*Radiance-based color calibration for image-based modeling with multiple cameras.
#@Xu Zhao,Zhong Zhou,Wei Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3371156
#% 
#!
  
#*Efficient construction of provably secure steganography under ordinary covert channels.
#@Yan Zhu,Mengyang Yu,Hongxin Hu,Gail-Joon Ahn,Hong-Jia Zhao
#t2012
#cSCIENCE CHINA Information Sciences
#index3371150
#% 
#!
  
#*A tracking loop based on tightly coupled range and velocity filter equations.
#@Wei Cui,Jing Tian,SiLiang Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3371127
#% 
#!
  
#*On the construction of multi-output Boolean functions with optimal algebraic immunity.
#@Jie Zhang,ShouChao Song,Jiao Du,Qiaoyan Wen
#t2012
#cSCIENCE CHINA Information Sciences
#index3371101
#% 
#!
  
#*Relay-assisted hierarchical adaptation scheme for multi-user scalable video delivery to heterogeneous mobile devices.
#@Hongjiang Xiao,Xiangyang Ji,Qionghai Dai
#t2012
#cSCIENCE CHINA Information Sciences
#index3371176
#% 
#!
  
#*An adaptive directional MAC protocol for ad hoc networks using directional antennas.
#@Xiaofeng Lu,Don Towsley,Pietro Liò,Zhang Xiong
#t2012
#cSCIENCE CHINA Information Sciences
#index3371107
#% 
#!
  
#*Development of a simple model for batch and boundary information updation for a similar ship's block model.
#@Hyeon-deok Lee,Myeong-jo Son,Min-jae Oh,Hyung-woo Lee,Tae-wan Kim
#t2012
#cSCIENCE CHINA Information Sciences
#index3371094
#% 
#!
  
#*Perceptual video hashing robust against geometric distortions.
#@Shijun Xiang,Jianquan Yang,JiWu Huang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371108
#% 
#!
  
#*Influence of sputtering power on properties of ZnO thin films fabricated by RF sputtering in room temperature.
#@Dedong Han,Yi Wang,Shengdong Zhang,Lei Sun,Ruqi Han,Satoru Matsumoto,Yuji Ino
#t2012
#cSCIENCE CHINA Information Sciences
#index3371170
#% 
#!
  
#*Research on resolution between multi-component LFM signals in the fractional Fourier domain.
#@Feng Liu,Huifa Xu,Ran Tao,Yue Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371160
#% 
#!
  
#*Memristor-based RRAM with applications.
#@Shukai Duan,Xiaofang Hu,Lidan Wang,Chuandong Li,Pinaki Mazumder
#t2012
#cSCIENCE CHINA Information Sciences
#index3371180
#% 
#!
  
#*A 12×10 Gb/s fully integrated CMOS parallel optical receiver front-end amplifier array.
#@Zhiqun Li,LiLi Chen,Wei Li,Li Zhang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371125
#% 
#!
  
#*Markov chain approach to identifying Wiener systems.
#@Wenxiao Zhao,Hanfu Chen
#t2012
#cSCIENCE CHINA Information Sciences
#index3371171
#% 
#!
  
#*Integrated management of facility, process, and output: data model perspective.
#@Seunghoon Lee,Soonhung Han,Duhwan Mun
#t2012
#cSCIENCE CHINA Information Sciences
#index3371143
#% 
#!
  
#*An overview of computational photography.
#@JinLi Suo,Xiangyang Ji,Qionghai Dai
#t2012
#cSCIENCE CHINA Information Sciences
#index3371152
#% 
#!
  
#*ISAR imaging via sparse frequency-stepped chirp signal.
#@Hongxian Wang,Yi Liang,Mengdao Xing,Shouhong Zhang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371116
#% 
#!
  
#*Robust multiuser MIMO scheduling algorithms with imperfect CSI.
#@Junling Mao,Jinchun Gao,Yuanan Liu,Gang Xie,Jian Zhang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371099
#% 
#!
  
#*Gray physical interference model based link scheduling algorithms.
#@Jinzhao Su,Jing Cao,Wei Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3371115
#% 
#!
  
#*Retransmission or redundancy: Transmission reliability study in wireless sensor networks.
#@Hao Wen,Chuang Lin,Fengyuan Ren,Jia Zhou,Yao Yue,Xiaomeng Huang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371102
#% 
#!
  
#*Evolutionary cryptography theory based generating method for a secure Koblitz elliptic curve and its improvement by a hidden Markov models.
#@Chao Wang,HuanGuo Zhang,Lili Liu
#t2012
#cSCIENCE CHINA Information Sciences
#index3371134
#% 
#!
  
#*Beamforming based decode-and-forward cooperation via backward synchronization.
#@Yubo Li,Qinye Yin,Chen Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371133
#% 
#!
  
#*Leakproof secret sharing protocols with applications to group identification scheme.
#@Chunming Tang,Shuhong Gao
#t2012
#cSCIENCE CHINA Information Sciences
#index3371151
#% 
#!
  
#*A directional MAC protocol with long-range communication ability in ad hoc networks.
#@Pinyi Ren,Jia Feng,Yichen Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371135
#% 
#!
  
#*Probabilistic fault localization with sliding windows.
#@Cheng Zhang,Jianxin Liao,Tonghong Li,Xiaomin Zhu
#t2012
#cSCIENCE CHINA Information Sciences
#index3371144
#% 
#!
  
#*Stability of impulsive stochastic functional differential systems in terms of two measures via comparison approach.
#@Fengqi Yao,Feiqi Deng
#t2012
#cSCIENCE CHINA Information Sciences
#index3371126
#% 
#!
  
#*Precise recognition of warhead and decoy based on components of micro-Doppler frequency curves.
#@Kunyi Guo,Xinqing Sheng
#t2012
#cSCIENCE CHINA Information Sciences
#index3371136
#% 
#!
  
#*Effect of surface passivation on optical and electronic properties of ultrathin silicon nanosheets.
#@Le Wang,Ke Wu,Qianmin Dong,Xiaoyan Li,Siyu Xiong,Leiting Xu,Pei Liang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371181
#% 
#!
  
#*Contourlet HMT model with directional feature.
#@Xianghai Wang,Mingying Chen,Chuanming Song,Mengchun Xu,Lingling Fang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371110
#% 
#!
  
#*Localized relaxation theory of circuits and its applications in electro-thermal analyses.
#@Zuying Luo,Guoxing Zhao,Joseph A. Gordon,Sheldon X.-D. Tan
#t2012
#cSCIENCE CHINA Information Sciences
#index3371169
#% 
#!
  
#*Stability for a class of nonlinear time-delay systems via Hamiltonian functional method.
#@RenMing Yang,YuZhen Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371172
#% 
#!
  
#*Synchronization of multiple autonomous underwater vehicles without velocity measurements.
#@RongXin Cui,WeiSheng Yan,DeMin Xu
#t2012
#cSCIENCE CHINA Information Sciences
#index3371161
#% 
#!
  
#*The correspondence between the concepts in description logics for contexts and formal concept analysis.
#@Yue Ma,Yuefei Sui,Cungen Cao
#t2012
#cSCIENCE CHINA Information Sciences
#index3371178
#% 
#!
  
#*L p shape deformation.
#@Lin Gao,GuoXin Zhang,YuKun Lai
#t2012
#cSCIENCE CHINA Information Sciences
#index3371168
#% 
#!
  
#*A wireless secret key generation method based on Chinese remainder theorem in FDD systems.
#@WenJie Wang,Hongyan Jiang,XiangGen Xia,Pengcheng Mu,QinYe Yin
#t2012
#cSCIENCE CHINA Information Sciences
#index3371100
#% 
#!
  
#*(2, n) secret sharing scheme for gray and color images based on Boolean operation.
#@Lin Dong,Daoshun Wang,Shundong Li,Yiqi Dai
#t2012
#cSCIENCE CHINA Information Sciences
#index3371132
#% 
#!
  
#*A universal adaptive vector quantization algorithm for space-borne SAR raw data.
#@Haiming Qi,Bin Hua,Xin Li,Weidong Yu,Wen Hong
#t2012
#cSCIENCE CHINA Information Sciences
#index3371137
#% 
#!
  
#*A novel fractional wavelet transform and its applications.
#@Jun Shi,Naitong Zhang,Xiaoping Liu
#t2012
#cSCIENCE CHINA Information Sciences
#index3371145
#% 
#!
  
#*Variable structure multiple model for articulated human motion tracking from monocular video sequences.
#@Hong Han,MingLei Tong,Zhichao Chen,YouJian Fan
#t2012
#cSCIENCE CHINA Information Sciences
#index3371123
#% 
#!
  
#*Simultaneous structure and geometry detail completion based on interactive user sketches.
#@Shen Yang,Yue Qi,Hong Qin
#t2012
#cSCIENCE CHINA Information Sciences
#index3371173
#% 
#!
  
#*Cluster based node scheduling method for wireless sensor networks.
#@Lei Wang,Ruizhong Wei,ZiHong Tian
#t2012
#cSCIENCE CHINA Information Sciences
#index3371118
#% 
#!
  
#*Medical image segmentation using improved FCM.
#@Xiaofeng Zhang,CaiMing Zhang,Wenjing Tang,ZhenWen Wei
#t2012
#cSCIENCE CHINA Information Sciences
#index3371154
#% 
#!
  
#*Image stylization with enhanced structure on GPU.
#@Ping Li,Hanqiu Sun,Bin Sheng,Jianbing Shen
#t2012
#cSCIENCE CHINA Information Sciences
#index3371131
#% 
#!
  
#*CMOS image sensor with optimal video sampling scheme.
#@Ning Guan,Xu Zhang,Bo Liu,Zan Dong,Beiju Huang,Yun Gui,Jianqiang Han,Yuan Wang,Zanyun Zhang,Hongda Chen
#t2012
#cSCIENCE CHINA Information Sciences
#index3371167
#% 
#!
  
#*Optimal MAC based cooperative spectrum sensing in cognitive radio networks.
#@Zhong Chen,Xianda Zhang,Lanjuan Yang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371124
#% 
#!
  
#*CMQV+: An authenticated key exchange protocol from CMQV.
#@Hui Li,ChuanKun Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3371109
#% 
#!
  
#*Per-layer transmit and receive filters design for Tomlinson-Harashima precoding in multiuser MIMO systems.
#@Min Huang,Xiang Chen,Shidong Zhou,Jing Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371159
#% 
#!
  
#*Strict constraints on 2D primitive pairs for engineering symbol recognition: Theory and application.
#@Ting Li,Xianjie Qiu,He Huang,Zhaoqi Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371103
#% 
#!
  
#*Capacity analysis and optimal power allocation for coordinated transmission in MIMO-OFDM systems.
#@Qimei Cui,Xueqing Huang,Bing Luo,Xiaofeng Tao,Jun Jiang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371096
#% 
#!
  
#*A scalable code dissemination protocol in heterogeneous wireless sensor networks.
#@Shaoliang Peng,Shanshan Li,Xiangke Liao,Yuxing Peng,Nong Xiao
#t2012
#cSCIENCE CHINA Information Sciences
#index3371153
#% 
#!
  
#*2D sparse signal recovery via 2D orthogonal matching pursuit.
#@Yong Fang,Jiaji Wu,BorMin Huang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371139
#% 
#!
  
#*Energy-efficient power allocation for selfish cooperative communication networks using bargaining game.
#@Enjie Ding,Guopeng Zhang,Peng Liu,Kun Yang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371120
#% 
#!
  
#*Target tracking in wireless sensor networks using adaptive measurement quantization.
#@Yan Zhou,Jianxun Li,Dongli Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371111
#% 
#!
  
#*Reliability-aware automatic composition approach for web services.
#@Mu Li,Bo Li,Jinpeng Huai
#t2012
#cSCIENCE CHINA Information Sciences
#index3371174
#% 
#!
  
#*SCautz: a high performance and fault-tolerant datacenter network for modular datacenters.
#@Feng Huang,Xicheng Lu,Dongsheng Li,Yiming Zhang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371146
#% 
#!
  
#*Symbolic algorithmic verification of intransitive generalized noninterference.
#@CongHua Zhou,ZhiFeng Liu,HaiLing Wu,Song Chen,ShiGuang Ju
#t2012
#cSCIENCE CHINA Information Sciences
#index3371179
#% 
#!
  
#*Transmission scheduling algorithm for MIMO link ad hoc networks.
#@Dan Chen,Jiandong Li,Changle Li
#t2012
#cSCIENCE CHINA Information Sciences
#index3371165
#% 
#!
  
#*Further results on the margin explanation of boosting: new algorithm and experiments.
#@Liwei Wang,Xiaocheng Deng,Zhaoxiang Jing,Jufu Feng
#t2012
#cSCIENCE CHINA Information Sciences
#index3371117
#% 
#!
  
#*On semi-bent functions with Niho exponents.
#@YeFeng He,Wenping Ma,Parminder Kang
#t2012
#cSCIENCE CHINA Information Sciences
#index3371104
#% 
#!
  
#*Optimal user scheduling and power control in multi-user cognitive broadcast systems.
#@Qunhuan Wang,Huiming Wang,Qinye Yin
#t2012
#cSCIENCE CHINA Information Sciences
#index3371138
#% 
#!
  
#*Pre-LOI trajectory maneuvers of the CHANG′E-2 libration point mission.
#@WeiRen Wu,Yong Liu,Lei Liu,Jianliang Zhou,Geshi Tang,YongZhi Chen
#t2012
#cSCIENCE CHINA Information Sciences
#index3371129
#% 
#!
  
#*A 630dpi dynamic LED display array in standard Si-based CMOS technology.
#@Zan Dong,Wei Wang,Beiju Huang,Xu Zhang,Ning Guan,Hongda Chen
#t2012
#cSCIENCE CHINA Information Sciences
#index3461275
#% 
#!
  
#*Compressed sensing SAR imaging based on sparse representation in fractional Fourier domain.
#@Hongxia Bu,Xia Bai,Ran Tao
#t2012
#cSCIENCE CHINA Information Sciences
#index3461271
#% 
#!
  
#*A new scheme of digital communication using chaotic signals in MIMO channels.
#@Huanfei Ma,Haibin Kan
#t2012
#cSCIENCE CHINA Information Sciences
#index3461264
#% 
#!
  
#*Reweighted minimization model for MR image reconstruction with split Bregman method.
#@Hui Zhang,Lizhi Cheng,Jianping Li
#t2012
#cSCIENCE CHINA Information Sciences
#index3461302
#% 
#!
  
#*Spotlight SAR sparse sampling and imaging method based on compressive sensing.
#@Huaping Xu,Yanan You,Chunsheng Li,Lvqian Zhang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461301
#% 
#!
  
#*MPtostream: an OpenMP compiler for CPU-GPU heterogeneous parallel systems.
#@Xuejun Yang,Tao Tang,Guibin Wang,Jia Jia,Xinhai Xu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461253
#% 
#!
  
#*Estimating fisheye camera parameters from homography.
#@Haijiang Zhu,Ping Yang,Shigang Li
#t2012
#cSCIENCE CHINA Information Sciences
#index3461277
#% 
#!
  
#*Influence factors of sparse microwave imaging radar system performance: approaches to waveform design and platform motion analysis.
#@Zhe Zhang,Bingchen Zhang,Chenglong Jiang,Yin Xiang,Wen Hong,Yirong Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461266
#% 
#!
  
#*Efficient DPCA SAR imaging with fast iterative spectrum reconstruction method.
#@Jian Fang,Jinshan Zeng,Zongben Xu,Yao Zhao
#t2012
#cSCIENCE CHINA Information Sciences
#index3461278
#% 
#!
  
#*Frequency/time hopping sequence sets with optimal partial Hamming correlation properties.
#@Xianhua Niu,Daiyuan Peng,Zhengchun Zhou
#t2012
#cSCIENCE CHINA Information Sciences
#index3461272
#% 
#!
  
#*An improved reduced-rank STAP interference suppression method in design of GNSS receivers.
#@Wenfei Gong,Xin Sun
#t2012
#cSCIENCE CHINA Information Sciences
#index3461293
#% 
#!
  
#*Performance improvement in multi-ship imaging for ScanSAR based on sparse representation.
#@Gang Xu,Jialian Sheng,Lei Zhang,Mengdao Xing
#t2012
#cSCIENCE CHINA Information Sciences
#index3461252
#% 
#!
  
#*Maximal contractions in Boolean algebras.
#@Huixian Shi,Guojun Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461263
#% 
#!
  
#*Design of multiple anti-windup loops for multiple activations.
#@Xiongjun Wu,Zongli Lin
#t2012
#cSCIENCE CHINA Information Sciences
#index3461303
#% 
#!
  
#*Multi-target state-estimation technique for the particle probability hypothesis density filter.
#@Liangkui Lin,Hui Xu,Weidong Sheng,Wei An
#t2012
#cSCIENCE CHINA Information Sciences
#index3461251
#% 
#!
  
#*An accurate SISAR imaging method of ground moving target in forward scatter radar.
#@Cheng Hu,Xiaoliang Li,Teng Long,Chao Zhou
#t2012
#cSCIENCE CHINA Information Sciences
#index3461286
#% 
#!
  
#*Editor's note.
#@Yirong Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461261
#% 
#!
  
#*Simple rateless error-correcting codes for fading channels.
#@Bo Bai,Baoming Bai,Xiao Ma
#t2012
#cSCIENCE CHINA Information Sciences
#index3461262
#% 
#!
  
#*Lion pride optimizer: An optimization algorithm inspired by lion pride behavior.
#@Bo Wang,Xiaoping Jin,Bo Cheng
#t2012
#cSCIENCE CHINA Information Sciences
#index3461268
#% 
#!
  
#*Networked Kalman filtering with combined constraints of bandwidth and random delay.
#@Quanbo Ge,Chenglin Wen,Tingliang Xu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461296
#% 
#!
  
#*A new algorithm for fast mining frequent itemsets using N-lists.
#@Zhihong Deng,Zhonghui Wang,Jia-Jian Jiang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461287
#% 
#!
  
#*Practical conditions of signal space alignment for generalized MIMO Y channel.
#@Jiaju She,Shanzhi Chen,Bo Hu,Yingmin Wang,Xin Su
#t2012
#cSCIENCE CHINA Information Sciences
#index3461270
#% 
#!
  
#*Displacement residual based DDM matching algorithm.
#@Lin Zhang,Zhong Zhou,Lin Liu,Wei Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461250
#% 
#!
  
#*Practical security against linear cryptanalysis for SMS4-like ciphers with SP round function.
#@Bin Zhang,Chenhui Jin
#t2012
#cSCIENCE CHINA Information Sciences
#index3461280
#% 
#!
  
#*AOD estimation in WSN localization system with synthetic aperture technique.
#@Wenjie Wang,Bobin Yao,Qinye Yin
#t2012
#cSCIENCE CHINA Information Sciences
#index3461295
#% 
#!
  
#*Sparse SAR imaging based on L 1/2 regularization.
#@Jinshan Zeng,Jian Fang,Zongben Xu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461285
#% 
#!
  
#*Improved FOCUSS method for reconstruction of cluster structured sparse signals in radar imaging.
#@Chenxi Hu,Yimin Liu,Gang Li,Xiqin Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461267
#% 
#!
  
#*High-speed reconstruction for ultra-low resolution faces.
#@Li Wang,Jiansheng Chen,Jinping He,Guangda Su
#t2012
#cSCIENCE CHINA Information Sciences
#index3461288
#% 
#!
  
#*Fractional Fourier domain equalization for single carrier broadband wireless systems.
#@Kewu Huang,Ran Tao,Yue Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461279
#% 
#!
  
#*Sparse microwave imaging: Principles and applications.
#@Bingchen Zhang,Wen Hong,Yirong Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461274
#% 
#!
  
#*Multi-polarimetric SAR image compression based on sparse representation.
#@Yuan Chen,Rong Zhang,Dong Yin
#t2012
#cSCIENCE CHINA Information Sciences
#index3461257
#% 
#!
  
#*Sparse synthetic aperture radar imaging with optimized azimuthal aperture.
#@Cao Zeng,Minhang Wang,Guisheng Liao,Shengqi Zhu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461256
#% 
#!
  
#*Compressive sensing SAR range compression with chirp scaling principle.
#@Peng Xiao,Ze Yu,Chunsheng Li
#t2012
#cSCIENCE CHINA Information Sciences
#index3461254
#% 
#!
  
#*An immune-theory-based model for monitoring inter-domain routing system.
#@Yi Guo,Zhenxing Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461289
#% 
#!
  
#*A novel spaceborne SAR wide-swath imaging approach based on Poisson disk-like nonuniform sampling and compressive sensing.
#@Jinping Sun,Yuxi Zhang,Jihua Tian,Jun Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461290
#% 
#!
  
#*Stability analysis of a hypersonic vehicle controlled by the characteristic model based adaptive controller.
#@Zhao Zhang,Jun Hu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461284
#% 
#!
  
#*A kernel learning framework for domain adaptation learning.
#@Jianwen Tao,Fu-Lai Chung,Shitong Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461259
#% 
#!
  
#*A novel compact low-power direct conversion receiver for mobile UHF RFID reader.
#@Shan Liu,Xin'an Wang,Jinpeng Shen,Bo Wang,Tao Ye,Ru Huang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461282
#% 
#!
  
#*Suppressing azimuth ambiguity in spaceborne SAR images based on compressed sensing.
#@Ze Yu,Min Liu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461298
#% 
#!
  
#*Behavioural equivalences of a probabilistic pi-calculus.
#@Weien Chen,Yongzhi Cao,Hanpin Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461269
#% 
#!
  
#*Vibration target detection and vibration parameters estimation based on the DPCA technique in dual-channel SAR.
#@Yingbin Chen,Bin Deng,Hongqiang Wang,Yuliang Qin,Jincan Ding
#t2012
#cSCIENCE CHINA Information Sciences
#index3461260
#% 
#!
  
#*Formal proof of integer adders using all-prefix-sums operation.
#@Feng Liu,QingPing Tan,Otmane Aït Mohamed
#t2012
#cSCIENCE CHINA Information Sciences
#index3461255
#% 
#!
  
#*MBA: A market-based approach to data allocation and dynamic migration for cloud database.
#@Tengjiao Wang,Ziyu Lin,Bishan Yang,Jun Gao,Allen Huang,Dongqing Yang,Qi Zhang,Shiwei Tang,Jinzhong Niu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461273
#% 
#!
  
#*Architecture design of low-power motion estimation based on DHS-NPDS for H.264/AVC.
#@Yunbi Chen,Zhengdong Li,Li Guo,Jinsheng Xie,Long Zhao
#t2012
#cSCIENCE CHINA Information Sciences
#index3461281
#% 
#!
  
#*A quantum-confinement model for surrounding-gate MOSFETS from subthreshold to strong-inversion regions.
#@Linlin Liu,Zunchao Li
#t2012
#cSCIENCE CHINA Information Sciences
#index3461297
#% 
#!
  
#*New application methods for word-oriented cryptographic primitives.
#@Yang Yang,Guang Zeng,Chenghui Jin,Yunying Qu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461258
#% 
#!
  
#*A novel cognitive ISAR imaging method with random stepped frequency chirp signal.
#@Feng Zhu,Qun Zhang,Ying Luo,Kai-ming Li,Fufei Gu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461283
#% 
#!
  
#*Coherent processing for ISAR imaging with sparse apertures.
#@Jialian Sheng,Lei Zhang,Gang Xu,Mengdao Xing,Zheng Bao
#t2012
#cSCIENCE CHINA Information Sciences
#index3461299
#% 
#!
  
#*A provable secure fuzzy identity based signature scheme.
#@Changji Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461292
#% 
#!
  
#*An output delay approach to fault estimation for sampled-data systems.
#@Chenglin Wen,Aibing Qiu,Bin Jiang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461276
#% 
#!
  
#*Evolution and stability of Linux kernels based on complex networks.
#@Lei Wang,Zheng Wang,Chen Yang,Li Zhang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461265
#% 
#!
  
#*Feature sensitive re-sampling of point set surfaces with Gaussian spheres.
#@Yongwei Miao,Jonas Bösch,Renato Pajarola,M. Gopi,Jieqing Feng
#t2012
#cSCIENCE CHINA Information Sciences
#index3461294
#% 
#!
  
#*Dynamic image stabilization precision test system based on the Hessian matrix.
#@Jing Li,Junzheng Wang,Shou-kun Wang,Liling Ma,Wei Shen
#t2012
#cSCIENCE CHINA Information Sciences
#index3461291
#% 
#!
  
#*Experimental results and analysis of sparse microwave imaging from spaceborne radar raw data.
#@Chenglong Jiang,Bingchen Zhang,Zhe Zhang,Wen Hong,Yirong Wu
#t2012
#cSCIENCE CHINA Information Sciences
#index3461249
#% 
#!
  
#*Design of novel, semi-transparent flip-flops (STFF) for high speed and low power application.
#@Xiayu Li,Song Jia,Limin Liu,Yuan Wang,Ganggang Zhang
#t2012
#cSCIENCE CHINA Information Sciences
#index3461300
#% 
#!
  
#*The learning performance of support vector machine classification based on Markov sampling.
#@Bin Zou,Zhiming Peng,Zongben Xu
#t2013
#cSCIENCE CHINA Information Sciences
#index3615716
#% 
#!
  
#*Rejection of nonharmonic disturbances for a class of uncertain nonlinear systems with nonlinear exosystems.
#@Yuan Jiang,Shutang Liu,Ruliang Wang
#t2013
#cSCIENCE CHINA Information Sciences
#index3615694
#% 
#!
  
#*Animating Chinese ink painting through generating reproducible brush strokes.
#@Lijie Yang,Tianchen Xu
#t2013
#cSCIENCE CHINA Information Sciences
#index3615666
#% 
#!
  
#*DKNNS: Scalable and accurate distributed K nearest neighbor search for latency-sensitive applications.
#@Yongquan Fu,Yijie Wang
#t2013
#cSCIENCE CHINA Information Sciences
#index3615693
#% 
#!
  
#*Cross-layer design for cooperative MIMO systems with relay selection and imperfect CSI.
#@Xiangbin Yu,Tingting Zhou,Yun Rui,Xin Yin,Ming Chen
#t2013
#cSCIENCE CHINA Information Sciences
#index3615676
#% 
#!
  
#*Construction of minimal trellises for quantum stabilizer codes.
#@Fangying Xiao,Hanwu Chen
#t2013
#cSCIENCE CHINA Information Sciences
#index3615663
#% 
#!
  
#*Sort-based relay selection algorithm for decode-and-forward relay system.
#@Gang Xie,Yuanan Liu,Jinchun Gao,Xing-zheng Li
#t2013
#cSCIENCE CHINA Information Sciences
#index3615661
#% 
#!
  
#*Principal whitened gradient-projection algorithm for distribution control.
#@Shicheng Zhang,Huafei Sun,Chunhui Li
#t2013
#cSCIENCE CHINA Information Sciences
#index3615707
#% 
#!
  
#*A unified algorithm for mobility load balancing in 3GPP LTE multi-cell networks.
#@Hao Wang,Nan Liu,Zhihang Li,Ping Wu,Zhiwen Pan,Xiaohu You
#t2013
#cSCIENCE CHINA Information Sciences
#index3615683
#% 
#!
  
#*Secure quantum report with authentication based on six-particle cluster state and entanglement swapping.
#@Ning Li,XinWei Zha,Qian Lan
#t2012
#cSCIENCE CHINA Information Sciences
#index3615704
#% 
#!
  
#*More efficient automatic repair of large-scale programs using weak recompilation.
#@Yuhua Qi,Xiaoguang Mao,Yanjun Wen,Ziying Dai,Bin Gu
#t2012
#cSCIENCE CHINA Information Sciences
#index3615652
#% 
#!
  
#*Optimal switching target-assignment based on the integral performance in cooperative tracking.
#@Yu Yao,Peng Zhang,Hugh Liu,Fenghua He
#t2013
#cSCIENCE CHINA Information Sciences
#index3615690
#% 
#!
  
#*Genetic algorithm approach for QoS-based tree topology construction in IEEE 802.16 mesh networks.
#@Saleh Yousefi,Saeed Bastani,Mojtaba Mazoochi,Alireza Ghiamatyoun
#t2013
#cSCIENCE CHINA Information Sciences
#index3615671
#% 
#!
  
#*Utility function of TCP Reno under precise end-to-end drop probability.
#@Ying Liu,He Li,Hongying Liu
#t2013
#cSCIENCE CHINA Information Sciences
#index3615668
#% 
#!
  
#*Rational secret sharing as extensive games.
#@Zhifang Zhang,Mulan Liu
#t2013
#cSCIENCE CHINA Information Sciences
#index3615660
#% 
#!
  
#*Anticipatory active monitoring for safety- and security-critical software.
#@Wei Dong,Changzhi Zhao,Shaoxian Shu,Martin Leucker
#t2012
#cSCIENCE CHINA Information Sciences
#index3615711
#% 
#!
  
#*Parameters identification of UCAV flight control system based on predator-prey particle swarm optimization.
#@Haibin Duan,Yaxiang Yu,Zhenyu Zhao
#t2013
#cSCIENCE CHINA Information Sciences
#index3615696
#% 
#!
  
#*Forced-convergence decoding for LDPC-coded modulation.
#@Liyun Dai,Hongwen Yang,Jianxiao Fan,Wenyuan Rao
#t2013
#cSCIENCE CHINA Information Sciences
#index3615653
#% 
#!
  
#*A 65 mW fully integrated UHF-band CMMB tuner in 65 nm CMOS process.
#@Junhua Liu,Chen Li,Long Chen,Congyin Shi,Xuankai Weng,Yixiao Wang,Jiayi Wang,Yu Liao,Le Ye,Huailin Liao,Ru Huang
#t2013
#cSCIENCE CHINA Information Sciences
#index3615697
#% 
#!
  
#*Modeling and analyzing mixed communications in service-oriented trustworthy software.
#@Jianmin Jiang,Shi Zhang,Ping Gong,Zhong Hong,HouGuang Yue
#t2012
#cSCIENCE CHINA Information Sciences
#index3615692
#% 
#!
  
#*Preface.
#@Xiao-Hu You,Ulf K?rner
#t2013
#cSCIENCE CHINA Information Sciences
#index3615669
#% 
#!
  
#*Resource allocation based on subcarrier exchange in multiuser OFDM system.
#@Ye Wang,Qinyu Zhang,Naitong Zhang
#t2013
#cSCIENCE CHINA Information Sciences
#index3615714
#% 
#!
  
#*Vector morphological operators in HSV color space.
#@Tao Lei,Yi Wang,Yangyu Fan,Jiong Zhao
#t2013
#cSCIENCE CHINA Information Sciences
#index3615702
#% 
#!
  
#*An octree-based proxy for collision detection in large-scale particle systems.
#@Wenshan Fan,Bin Wang,Jean-Claude Paul,Jia-Guang Sun
#t2013
#cSCIENCE CHINA Information Sciences
#index3615679
#% 
#!
  
#*Clustering mechanism for electric tomography imaging.
#@Shihong Yue,Teresa Wu,Lijun Cui,Huaxiang Wang
#t2012
#cSCIENCE CHINA Information Sciences
#index3615674
#% 
#!
  
#*VMckpt: lightweight and live virtual machine checkpointing.
#@Haikun Liu,Hai Jin,Xiaofei Liao,Bo Ma,Cheng-Zhong Xu
#t2012
#cSCIENCE CHINA Information Sciences
#index3615699
#% 
#!
  
#*Outage probability analysis for superposition coded symmetric relaying.
#@Yi Wu,Meng Zheng,Zesong Fei,Erik G. Larsson,Jingming Kuang
#t2013
#cSCIENCE CHINA Information Sciences
#index3615650
#% 
#!
  
#*An evaluation framework for energy aware buildings using statistical model checking.
#@Alexandre David,Dehui Du,Kim G. Larsen,Marius Mikucionis,Arne Skou
#t2012
#cSCIENCE CHINA Information Sciences
#index3615656
#% 
#!
  
#*Resource management in radio access and IP-based core networks for IMT Advanced and Beyond.
#@Gang Su,Markus Hidell,Henrik Abrahamsson,Bengt Ahlgren,Dan Li,Peter Sj?din,Voravit Tanyingyong,Ke Xu
#t2013
#cSCIENCE CHINA Information Sciences
#index3615712
#% 
#!
  
#*Finding shrink critical section refactoring opportunities for the evolution of concurrent code in trustworthy software.
#@Ju Qian,Lin Chen,Baowen Xu
#t2013
#cSCIENCE CHINA Information Sciences
#index3615659
#% 
#!
  
#*Optimal power allocation for homogeneous and heterogeneous CA-MIMO systems.
#@Qimei Cui,Peichuan Kang,Xueqing Huang,Mikko Valkama,Jarno Niemel?
#t2013
#cSCIENCE CHINA Information Sciences
#index3615705
#% 
#!
  
#*Dual quaternion based virtual hand interaction modeling.
#@Wenfeng Chen,Shujing Zhu,Huagen Wan,Jieqing Feng
#t2013
#cSCIENCE CHINA Information Sciences
#index3615687
#% 
#!
  
#*How faithfully can π be interpreted in SA?
#@Huan Long,Yuxi Fu
#t2013
#cSCIENCE CHINA Information Sciences
#index3615672
#% 
#!
  
#*On channel quantization for multi-cell cooperative systems with limited feedback.
#@XueYing Hou,ChenYang Yang,Buon Kiong Lau
#t2013
#cSCIENCE CHINA Information Sciences
#index3615698
#% 
#!
  
#*Construction of even-variable rotation symmetric Boolean functions with maximum algebraic immunity.
#@Shaojing Fu,Chao Li,Kanta Matsuura,Longjiang Qu
#t2013
#cSCIENCE CHINA Information Sciences
#index3615651
#% 
#!
  
#*Localizing root causes of performance anomalies in cloud computing systems by analyzing request trace logs.
#@Haibo Mi,Huaimin Wang,Yangfan Zhou,Michael R. Lyu,Hua Cai
#t2012
#cSCIENCE CHINA Information Sciences
#index3615657
#% 
#!
  
#*Utility-based bandwidth allocation algorithm for heterogeneous wireless networks.
#@Rong Chai,Xiujuan Wang,QianBin Chen,Tommy Svensson
#t2013
#cSCIENCE CHINA Information Sciences
#index3615677
#% 
#!
  
#*Automatic real-time SLAM relocalization based on a hierarchical bipartite graph model.
#@Qiulei Dong,Zhaopeng Gu,Zhanyi Hu
#t2012
#cSCIENCE CHINA Information Sciences
#index3615658
#% 
#!
  
#*On precoding for overlapped clustering in a measured urban macrocellular environment.
#@Jie Gong,Sheng Zhou,Buon Kiong Lau,Zhisheng Niu
#t2013
#cSCIENCE CHINA Information Sciences
#index3615675
#% 
#!
  
#*Packet combining based on cross-packet coding.
#@DengSheng Lin,Ming Xiao,Shaoqian Li
#t2013
#cSCIENCE CHINA Information Sciences
#index3615703
#% 
#!
  
#*Employing intelligence in object-based storage devices to provide attribute-based file access.
#@Youhui Zhang,Ziqiang Qian,Weimin Zheng
#t2013
#cSCIENCE CHINA Information Sciences
#index3615684
#% 
#!
  
#*The stochastic semantics and verification for periodic control systems.
#@Mengfei Yang,Zheng Wang,Geguang Pu,Shengchao Qin,Bin Gu,Jifeng He
#t2012
#cSCIENCE CHINA Information Sciences
#index3615715
#% 
#!
  
#*Bistatic scattering centres of cone-shaped targets and target length estimation.
#@Xiaofeng Ai,Xiaohai Zou,Yongzhen Li,Jianhua Yang,Shunping Xiao
#t2012
#cSCIENCE CHINA Information Sciences
#index3615681
#% 
#!
  
#*Selectively unforgeable but existentially forgeable signature schemes and applications.
#@Haibo Tian,Fangguo Zhang,Xiaofeng Chen,Baodian Wei
#t2013
#cSCIENCE CHINA Information Sciences
#index3615664
#% 
#!
  
#*Towards a degradation-based mechanism for adaptive overload control.
#@Ziyou Wang,Minghui Zhou,Hong Mei
#t2012
#cSCIENCE CHINA Information Sciences
#index3615686
#% 
#!
  
#*Effects of finite samples on the resolution performance of the rank reduction estimator.
#@Ding Wang,Ying Wu
#t2013
#cSCIENCE CHINA Information Sciences
#index3615643
#% 
#!
  
#*IK-CPA security implies IE-CCA security in the random oracle model.
#@Rui Xue
#t2013
#cSCIENCE CHINA Information Sciences
#index3615678
#% 
#!
  
#*Software structure evaluation based on the interaction and encapsulation of methods.
#@Qinghua Zheng,Zhijiang Ou,Ting Liu,Zijiang Yang,Yuqiao Hou,Chao Zheng
#t2012
#cSCIENCE CHINA Information Sciences
#index3615708
#% 
#!
  
#*Multiple symbols soft-decision metrics for coded frequency-shift keying signals.
#@Zheng Ma,Daniel Persson,Erik G. Larsson,Pingzhi Fan
#t2013
#cSCIENCE CHINA Information Sciences
#index3615701
#% 
#!
  
#*Coupled dictionary learning method for image decomposition.
#@Yafeng Li,Xiangchu Feng
#t2013
#cSCIENCE CHINA Information Sciences
#index3615649
#% 
#!
  
#*Comparing logic coverage criteria on test case prioritization.
#@Chunrong Fang,Zhenyu Chen,Baowen Xu
#t2012
#cSCIENCE CHINA Information Sciences
#index3615689
#% 
#!
  
#*Efficient polygonization of tree trunks modeled by convolution surfaces.
#@Xiaoqiang Zhu,Xuekun Guo,Xiaogang Jin
#t2013
#cSCIENCE CHINA Information Sciences
#index3615670
#% 
#!
  
#*Animating turbulent water by vortex shedding in PIC/FLIP.
#@Jian Zhu,Youquan Liu,Yuanzhang Chang,Enhua Wu
#t2013
#cSCIENCE CHINA Information Sciences
#index3615682
#% 
#!
  
#*An in-depth investigation into the relationships between structural metrics and unit testability in object-oriented systems.
#@Yuming Zhou,Hareton Leung,Qinbao Song,Jianjun Zhao,Hongmin Lu,Lin Chen,Baowen Xu
#t2012
#cSCIENCE CHINA Information Sciences
#index3615688
#% 
#!
  
#*An IconMap-based exploratory analytical approach for multivariate geospatial data.
#@Xianfeng Zhang,Chunhua Liao,Yu Liu,Jonathan Li
#t2013
#cSCIENCE CHINA Information Sciences
#index3615691
#% 
#!
  
#*Energy efficient downlink MIMO transmission with linear precoding.
#@Jie Xu,Shichao Li,Ling Qiu,Slimane Ben Slimane,Chengwen Yu
#t2013
#cSCIENCE CHINA Information Sciences
#index3615709
#% 
#!
  
#*Finding orthogonal latin squares using finite model searching tools.
#@Feifei Ma,Jian Zhang
#t2013
#cSCIENCE CHINA Information Sciences
#index3615648
#% 
#!
  
#*A broker-based semantic agent for discovering Semantic Web services through process similarity matching and equivalence considering quality of service.
#@Duygu ?elik,Atilla El?i
#t2013
#cSCIENCE CHINA Information Sciences
#index3615710
#% 
#!
  
#*Parallel lightpath provisioning under wavelength continuity constraint in multi-domain optical networks based on hierarchical path computation element.
#@Jian Sun,Zongwei Wang,Zhen Chen,Yunfeng Peng
#t2013
#cSCIENCE CHINA Information Sciences
#index3615700
#% 
#!
  
#*Research and progress of Beidou satellite navigation system.
#@Fuping Sun,Shuai Liu,Xinhui Zhu,Baohong Men
#t2012
#cSCIENCE CHINA Information Sciences
#index3615665
#% 
#!
  
#*Lifetime maximization routing with network coding in wireless multihop networks.
#@Lianghui Ding,Ping Wu,Hao Wang,Zhiwen Pan,Xiaohu You
#t2013
#cSCIENCE CHINA Information Sciences
#index3615655
#% 
#!
  
#*Loop reduction techniques for reachability analysis of linear hybrid automata.
#@Minxue Pan,You Li,Lei Bu,Xuandong Li
#t2012
#cSCIENCE CHINA Information Sciences
#index3615646
#% 
#!
  
#*A dynamical inequality for the output of uncertain nonlinear systems.
#@Chanying Li,Lei Guo
#t2013
#cSCIENCE CHINA Information Sciences
#index3615645
#% 
#!
  
#*Energy-efficient power allocation for non-regenerative OFDM relay links.
#@Huan Yu,Haohao Qin,Yunzhou Li,Yifei Zhao,Xibin Xu,Jing Wang
#t2013
#cSCIENCE CHINA Information Sciences
#index3615680
#% 
#!
  
#*Intelligent transportation systems for smart cities: a progress review.
#@Zhang Xiong,Hao Sheng,Wenge Rong,Dave E. Cooper
#t2012
#cSCIENCE CHINA Information Sciences
#index3615667
#% 
#!
  
#*A representative model based algorithm for maximal contractions.
#@Dongchen Jiang,Yihua Lou,Yi Jin,Jie Luo,Wei Li
#t2013
#cSCIENCE CHINA Information Sciences
#index3615706
#% 
#!
  
#*An efficient method for detecting concurrency errors in object-oriented programs.
#@Yanxiang He,Wei Wu,Yong Chen
#t2012
#cSCIENCE CHINA Information Sciences
#index3615695
#% 
#!
  
#*Online illumination estimation of outdoor scenes based on videos containing no shadow area.
#@Guanyu Xing,Xuehong Zhou,Yanli Liu,Xueying Qin,Qunsheng Peng
#t2013
#cSCIENCE CHINA Information Sciences
#index3615713
#% 
#!
  
#*Simulation of free-surface flow using a boundless grid.
#@Changbo Wang,Qiang Zhang,Fanlong Kong
#t2013
#cSCIENCE CHINA Information Sciences
#index3615654
#% 
#!
  
#*Construction of punctured and extended quantum codes over GF(2).
#@Fangying Xiao,Hanwu Chen,Meiju Xing,Zhihao Liu
#t2013
#cSCIENCE CHINA Information Sciences
#index3615647
#% 
#!
  
#*Improving cis-regulatory elements modeling by consensus scaffolded mixture models.
#@Hongshan Jiang,Ying Zhao,Wenguang Chen,Weimin Zheng,Xuegong Zhang
#t2013
#cSCIENCE CHINA Information Sciences
#index3615644
#% 
#!
  
#*Clustering by data competition.
#@Zhimao Lu,Qi Zhang
#t2013
#cSCIENCE CHINA Information Sciences
#index3615662
#% 
#!
  
#*Statistically robust resource allocation for distributed multi-carrier cooperative networks.
#@ChengWen Xing,ZeSong Fei,Na Li,YanTao Han,Danyo Danev,JingMing Kuang
#t2013
#cSCIENCE CHINA Information Sciences
#index3615673
#% 
#!
  
#*Resource pooling for frameless network architecture with adaptive resource allocation.
#@Xiaodong Xu,Da Wang,Xiaofeng Tao,Tommy Svensson
#t2013
#cSCIENCE CHINA Information Sciences
#index3615685
#% 
#!
  
#*Graph separators with applications.
#@Arnold L. Rosenberg,Lenwood S. Heath
#t2001
#cFrontiers of computer science
#index3004347
#% 
#!
  
#*Parallel evolution of parallel processors.
#@Gil Lerman,Larry Rudolph
#t1993
#cFrontiers of computer science
#index3006450
#% 
#!
  
#*Matching dependencies: semantics and query answering.
#@Jaffer Gardezi,Leopoldo E. Bertossi,Iluju Kiringa
#t2012
#cFrontiers of computer science
#index3378237
#% 
#!
  
#*Multi-stream join answering for mining significant cross-stream correlations.
#@Robert Gwadera
#t2012
#cFrontiers of computer science
#index3378244
#% 
#!
  
#*Tractable XML data exchange via relations.
#@Rada Chirkova,Leonid Libkin,Juan L. Reutter
#t2012
#cFrontiers of computer science
#index3378243
#%1118156
#%176754
#%2793759
#%1212957
#%1137986
#%951984
#%1138018
#%1227387
#%600179
#%145244
#%2810688
#%1091016
#%1118334
#%642621
#%821774
#%1113992
#%1138143
#%545232
#%300453
#%643083
#%1214198
#%1065347
#%643529
#%643730
#%599797
#%599499
#%600020
#!
  
#*An approach for automatic sleep stage scoring and apnea-hypopnea detection.
#@Tim Schlüter,Stefan Conrad
#t2012
#cFrontiers of computer science
#index3378238
#% 
#!
  
#*Two of a kind or the ratings game? Adaptive pairwise preferences and latent factor models.
#@Suhrid Balakrishnan,Sumit Chopra
#t2012
#cFrontiers of computer science
#index3378235
#% 
#!
  
#*Stratified sampling for data mining on the deep web.
#@Tantan Liu,Fan Wang,Gagan Agrawal
#t2012
#cFrontiers of computer science
#index3378246
#% 
#!
  
#*An effective framework for characterizing rare categories.
#@Jingrui He,Hanghang Tong,Jaime G. Carbonell
#t2012
#cFrontiers of computer science
#index3378236
#% 
#!
  
#*Active improvement of hierarchical object features under budget constraints.
#@Nicolas Cebron
#t2012
#cFrontiers of computer science
#index3378240
#% 
#!
  
#*Managing advertising campaigns - an approximate planning approach.
#@Sertan Girgin,Jérémie Mary,Philippe Preux,Olivier Nicol
#t2012
#cFrontiers of computer science
#index3378245
#% 
#!
  
#*Resilient -d trees: -means in space revisited.
#@Fabian Gieseke,Gabriel Moruz,Jan Vahrenhold
#t2012
#cFrontiers of computer science
#index3378241
#% 
#!
  
#*Adding regular expressions to graph reachability and pattern queries.
#@Wenfei Fan,Jianzhong Li,Shuai Ma,Nan Tang,Yinghui Wu
#t2012
#cFrontiers of computer science
#index3378239
#% 
#!
  
#*Composite recommendations: from items to packages.
#@Min Xie,Laks V. S. Lakshmanan,Peter T. Wood
#t2012
#cFrontiers of computer science
#index3378247
#% 
#!
  
#*Linking temporal records.
#@Pei Li,Xin Luna Dong,Andrea Maurino,Divesh Srivastava
#t2012
#cFrontiers of computer science
#index3378242
#% 
#!
  
#*A probabilistic model with multi-dimensional features for object extraction.
#@Jing Wang,Zhijing Liu,Hui Zhao
#t2012
#cFrontiers of computer science
#index3466229
#% 
#!
  
#*An efficient approach for continuous density queries.
#@Jie Wen,Xiaofeng Meng,Xing Hao,Jianliang Xu
#t2012
#cFrontiers of computer science
#index3466230
#% 
#!
  
#*Measure oriented training: a targeted approach to imbalanced classification problems.
#@Bo Yuan,Wenhuang Liu
#t2012
#cFrontiers of computer science
#index3466239
#% 
#!
  
#*Social influence and spread dynamics in social networks.
#@Xiaolong Zheng,Yongguang Zhong,Daniel Zeng,Fei-Yue Wang
#t2012
#cFrontiers of computer science
#index3466221
#% 
#!
  
#*A group priority earliest deadline first scheduling algorithm.
#@Qi Li,Wei Ba
#t2012
#cFrontiers of computer science
#index3466231
#% 
#!
  
#*Fostering artificial societies using social learning and social control in parallel emergency management systems.
#@Wei Duan,Xiao-Gang Qiu
#t2012
#cFrontiers of computer science
#index3466238
#% 
#!
  
#*A qualitative and quantitative study of color emotion using valence-arousal.
#@Shangfei Wang,Rui Ding
#t2012
#cFrontiers of computer science
#index3466220
#% 
#!
  
#*Rethinking the architecture design of data center networks.
#@Kaishun Wu,Jiang Xiao,Lionel M. Ni
#t2012
#cFrontiers of computer science
#index3466217
#% 
#!
  
#*The ClasSi coefficient for the evaluation of ranking quality in the presence of class similarities.
#@Anca Maria Ivanescu,Marc Wichterich,Christian Beecks,Thomas Seidl
#t2012
#cFrontiers of computer science
#index3466232
#% 
#!
  
#*Towards architecture-based management of platforms in the cloud.
#@Gang Huang,Xing Chen,Ying Zhang,Xiaodong Zhang
#t2012
#cFrontiers of computer science
#index3466241
#% 
#!
  
#*Automatic object classification using motion blob based local feature fusion for traffic scene surveillance.
#@Zhaoxiang Zhang,Yunhong Wang
#t2012
#cFrontiers of computer science
#index3466219
#% 
#!
  
#*Dynamic cache partitioning based on hot page migration.
#@Xiaolin Wang,Xiang Wen,Yechen Li,Zhenlin Wang,Yingwei Luo,Xiaoming Li
#t2012
#cFrontiers of computer science
#index3466240
#% 
#!
  
#*A uniform solution to the independent set problem through tissue P systems with cell separation.
#@Xingyi Zhang,Xiangxiang Zeng,Bin Luo,Zheng Zhang
#t2012
#cFrontiers of computer science
#index3466233
#% 
#!
  
#*A precise approach to tracking dim-small targets using spectral fingerprint features.
#@Hao Sheng,Chao Li,Yuanxin Ouyang,Zhang Xiong
#t2012
#cFrontiers of computer science
#index3466218
#% 
#!
  
#*Bus holding strategy based on shuffled complex evolution method.
#@Yu Jiang,Shuli Gong
#t2012
#cFrontiers of computer science
#index3466236
#% 
#!
  
#*Efficient ID-based proxy multi-signature scheme secure in random oracle.
#@Rajeev Anand Sahu,Sahadeo Padhye
#t2012
#cFrontiers of computer science
#index3466225
#% 
#!
  
#*How much power is needed for a billion-thread high-throughput server?
#@Zhiwei Xu
#t2012
#cFrontiers of computer science
#index3466227
#% 
#!
  
#*Classification-based self-adaptive differential evolution and its application in multi-lateral multi-issue negotiation.
#@Xiaojun Bi,Jing Xiao
#t2012
#cFrontiers of computer science
#index3466226
#% 
#!
  
#*Effectively deploying services on virtualization infrastructure.
#@Wei Gao,Hai Jin,Song Wu,Xuanhua Shi,Jinyan Yuan
#t2012
#cFrontiers of computer science
#index3466224
#% 
#!
  
#*Energy-aware application performance management in virtualized data centers.
#@Hui Chen,Ping Lu,Pengcheng Xiong,Cheng-Zhong Xu,Zhiping Wang
#t2012
#cFrontiers of computer science
#index3466234
#% 
#!
  
#*Improving bagging performance through multi-algorithm ensembles.
#@Kuo-Wei Hsu,Jaideep Srivastava
#t2012
#cFrontiers of computer science
#index3466223
#%1038389
#%1009242
#%1009234
#%491015
#%1031197
#%527681
#%2809352
#%1009566
#%491089
#%340628
#%1306483
#%1264722
#%389760
#%473609
#%1063711
#%2360
#%1033562
#%1009890
#%335717
#%15871
#%335845
#%274057
#%96181
#%1003702
#!
  
#*CloudRank-D: benchmarking and ranking cloud computing systems for data processing applications.
#@Chunjie Luo,Jianfeng Zhan,Zhen Jia,Lei Wang,Gang Lu,Lixin Zhang,Cheng-Zhong Xu,Ninghui Sun
#t2012
#cFrontiers of computer science
#index3466228
#% 
#!
  
#*An efficient MAC scheme for secure network coding with probabilistic detection.
#@Boyang Wang,Hui Li,Jin Cao
#t2012
#cFrontiers of computer science
#index3466237
#% 
#!
  
#*A co-evolving memetic wrapper for prediction of patient outcomes in TCM informatics.
#@Dion Detterer,Paul Kwan,Cedric Gondro
#t2012
#cFrontiers of computer science
#index3466235
#% 
#!
  
#*An efficient method for privacy preserving location queries.
#@Yubao Liu,Xiuwei Chen,Zhan Li,Zhijie Li,Raymond Chi-Wing Wong
#t2012
#cFrontiers of computer science
#index3466242
#% 
#!
  
#*Real-time urban traffic information estimation with a limited number of surveillance cameras.
#@Guangtao Xue,Ke Zhang,Qi He,Hongzi Zhu
#t2012
#cFrontiers of computer science
#index3466222
#% 
#!
  
#*Consolidated cluster systems for data centers in the cloud age: a survey and analysis.
#@Jian Lin,Li Zha,Zhiwei Xu
#t2013
#cFrontiers of computer science
#index3650654
#% 
#!
  
#*A graph-based generic type system for object-oriented programs.
#@Wei Ke,Zhiming Liu,Shuling Wang,Liang Zhao
#t2013
#cFrontiers of computer science
#index3650658
#% 
#!
  
#*Geometric attack resistant image watermarking based on MSER.
#@Xuejuan Zhang,Xiaochun Cao,Jingjie Li
#t2013
#cFrontiers of computer science
#index3650653
#% 
#!
  
#*Evaluation of RDF queries via equivalence.
#@Weiwei Ni,Zhihong Chong,Hu Shu,Jiajia Bao,Aoying Zhou
#t2013
#cFrontiers of computer science
#index3650657
#% 
#!
  
#*A novel unsupervised approach for multilevel image clustering from unordered image collection.
#@Lai Kang,Lingda Wu,Yee-Hong Yang
#t2013
#cFrontiers of computer science
#index3650652
#% 
#!
  
#*Hybrid MARTE statecharts.
#@Jing Liu,Ziwei Liu,Jifeng He,Frédéric Mallet,Zuohua Ding
#t2013
#cFrontiers of computer science
#index3650656
#% 
#!
  
#*Noisy component extraction with reference.
#@Yongjian Zhao,Hong He,Jianxun Mi
#t2013
#cFrontiers of computer science
#index3650651
#% 
#!
  
#*Semantic separator learning and its applications in unsupervised Chinese text parsing.
#@Yuming Wu,Xiaodong Luo,Zhen Yang
#t2013
#cFrontiers of computer science
#index3650650
#% 
#!
  
#*A general framework for computing maximal contractions.
#@Jie Luo
#t2013
#cFrontiers of computer science
#index3650649
#% 
#!
  
#*Design and verification of a lightweight reliable virtual machine monitor for a many-core architecture.
#@Yue-hua Dai,Yi Shi,Yong Qi,Jianbao Ren,Peijian Wang
#t2013
#cFrontiers of computer science
#index3650659
#% 
#!
  
#*VGQ-Vor: extending virtual grid quadtree with Voronoi diagram for mobile k nearest neighbor queries over mobile objects.
#@Botao Wang,Jingwei Qu,Xiaosong Wang,Guoren Wang,Masaru Kitsuregawa
#t2013
#cFrontiers of computer science
#index3650655
#% 
#!
  
#*Modeling Fractal Dynamical Systems in the Complex Space. From Macro-Observation to Micro-Observation.
#@Guy Jumarie
#t2002
#cCybernetics and Systems
#index782999
#% 
#!
  
#*Building Blocks for an Artificial Intelligence Framework in the Field of Legal Evidence, Part II.
#@Ephraim Nissan,Antonio A. Martino
#t2003
#cCybernetics and Systems
#index783000
#% 
#!
  
#*eVEREst--Supporting Estimation of Real Estate Value.
#@Witold Abramowicz,Andrzej Bassara,Agata Filipowska,Marek Wisniewski
#t2004
#cCybernetics and Systems
#index783001
#% 
#!
  
#*Expanding the Notion of "Scientific".
#@Kirk W. Junker
#t2003
#cCybernetics and Systems
#index783002
#% 
#!
  
#*Pattern Recognition and Image Analysis in Cybernetic Applications.
#@
#t2004
#cCybernetics and Systems
#index783003
#% 
#!
  
#*Mobility implications for m-government platform design.
#@Witold Abramowicz,Andrzej Bassara,Agata Filipowska,Marek Wisniewski,Pawel Zebrowski
#t2006
#cCybernetics and Systems
#index783004
#% 
#!
  
#*A multimodal biometric identification system using compressed finger images.
#@Gulzar A. Khuwaja
#t2006
#cCybernetics and Systems
#index783005
#% 
#!
  
#*Raising Community Awareness About the Environment Through Dynamically Generated Stories.
#@Janet Aisbett,Greg Gibbon,Brian Regan
#t2004
#cCybernetics and Systems
#index783006
#% 
#!
  
#*A Humanlike Grasping Force Planner for Object Manipulation by Robot Manipulators.
#@Kazuo Kiguchi,Keigo Watanabe,Kiyotaka Izumi,Toshio Fukuda
#t2003
#cCybernetics and Systems
#index783007
#% 
#!
  
#*The Unit RBFNetwork: Experiments and Preliminary Results.
#@Peter G. Anderson
#t2002
#cCybernetics and Systems
#index783008
#% 
#!
  
#*The Information Model Of Collective Dynamics.
#@Vladimir S. Lerner
#t2005
#cCybernetics and Systems
#index783009
#% 
#!
  
#*A Neural Network Interpretation Of Codons.
#@P. Anderson,R. Gaborski,Y. Chang
#t2004
#cCybernetics and Systems
#index783010
#% 
#!
  
#*Accounting for Human Activity Through Physics.
#@Paul Jorion
#t2004
#cCybernetics and Systems
#index783011
#% 
#!
  
#*Model Management For Hierarchically Structured Models And Its Application.
#@Naoki Shiba
#t2002
#cCybernetics and Systems
#index783012
#% 
#!
  
#*Mobile Environmental Information Systems.
#@Harri Antikainen,Alfred Colpaert,Niina Jaako,Jarmo Rusanen,Dan Bendas,Mauri Myllyaho,Markku Oivo,Pasi Kuvaja,Jouni Similä,Kyösti Marjoniemi,Kari Laine,Esko Saari
#t2004
#cCybernetics and Systems
#index783013
#% 
#!
  
#*Fuzzy Activity Times In Critical Path And Project Crashing Problems.
#@Shiang-Tai Liu
#t2003
#cCybernetics and Systems
#index783014
#% 
#!
  
#*Comment: Theory And Existence.
#@
#t2004
#cCybernetics and Systems
#index783015
#% 
#!
  
#*Why a Theory of History is Possible.
#@Paul Ballonoff
#t2004
#cCybernetics and Systems
#index783016
#% 
#!
  
#*Fuzzy Measures For Fuzzy Signal-To-Noise Ratios.
#@Shiang-Tai Liu
#t2005
#cCybernetics and Systems
#index783017
#% 
#!
  
#*Cultural Systems and Organizational Processes: Observations on the Conference Papers.
#@
#t2004
#cCybernetics and Systems
#index783018
#% 
#!
  
#*Correspondence among mathematical treatments of culture theory.
#@Paul Ballonoff
#t2005
#cCybernetics and Systems
#index783019
#% 
#!
  
#*Combined PD-HX Approach To Control Of Flexible Link Manipulators Using Only Directly Measurable Variables.
#@Ibone Lizarraga,Victor Etxebarria
#t2003
#cCybernetics and Systems
#index783020
#% 
#!
  
#*DANUBIA: An Integrative Simulation System for Global Change Research in the Upper Danube Basin.
#@Michael N. Barth,Rolf Hennicker,Andreas Kraus,Matthias Ludwig
#t2004
#cCybernetics and Systems
#index783021
#% 
#!
  
#*Sliding-mode adaptive control for flexible-link manipulators using a composite design.
#@Ibone Lizarraga,Victor Etxebarria,Arantza Sanz
#t2005
#cCybernetics and Systems
#index783022
#% 
#!
  
#*Bringing Up Robot: Fundamental Mechanisms For Creating A Self-Motivated, Self-Organizing Architecture.
#@Douglas S. Blank,Deepak Kumar,Lisa Meeden,James B. Marshall
#t2005
#cCybernetics and Systems
#index783023
#% 
#!
  
#*Parameters Estimation For Timed And Continuous Petri Nets: Application To The Identification And Monitoring Of Hybrid Systems.
#@Dimitri Lefebvre,Philippe Thomas
#t2005
#cCybernetics and Systems
#index783024
#% 
#!
  
#*Real And Virtual Environments In Environmental Engineering: Approaches, Models, Technologies, And Critical Issues.
#@
#t2004
#cCybernetics and Systems
#index783025
#% 
#!
  
#*Integrated Modeling Of Road Traffic Emissions: Application To Lisbon Air Quality Management.
#@C. Borrego,O. Tchepel,L. Salmim,J. H. Amorim,A. M. Costa,J. Janko
#t2004
#cCybernetics and Systems
#index783026
#% 
#!
  
#*Multiple sliding surface control for systems in nonlinear block controllable form.
#@Zhao Lu,Feng Lin,Hao Ying
#t2005
#cCybernetics and Systems
#index783027
#% 
#!
  
#*Multiclass Object Recognition Using Class-Conditional Independent Component Analysis.
#@Marco Bressan,David Guillamet,Jordi Vitrià
#t2004
#cCybernetics and Systems
#index783028
#% 
#!
  
#*Robot Path Planning Based on Modified Grey Relational Analysis.
#@Jung-Ching Lu,Ming-Feng Yeh
#t2002
#cCybernetics and Systems
#index783029
#% 
#!
  
#*A Requisitely Holistic View Of Human Resources Management In Innovative Enterprises.
#@
#t2005
#cCybernetics and Systems
#index783030
#% 
#!
  
#*The extended process model--transforming process specifications into ontological representations.
#@Holger Brocks,Henning Meyer,Thomas Kamps,Christian Begger
#t2006
#cCybernetics and Systems
#index783031
#% 
#!
  
#*Computational Study on Toxic Gases Released from Compartment Fires Suppressed with Halogenated Agents.
#@C. Luo,B. Z. Dlugogorski,B. Moghtaderi,E. M. Kennedy
#t2004
#cCybernetics and Systems
#index783032
#% 
#!
  
#*Improved Convergence Through Dynamic Programming Approach.
#@Angelica Calu
#t2002
#cCybernetics and Systems
#index783033
#% 
#!
  
#*Interactive decision making using possibility and necessity measures for a fuzzy random multiobjective 0-1 programming problem.
#@Hideki Katagiri,Masatoshi Sakawa,Ichiro Nishizaki
#t2006
#cCybernetics and Systems
#index783034
#% 
#!
  
#*Nonlinear Robust Control for Parallel AC/DC Transmission Systems: a New Adaptive Back-stepping Approach.
#@Jun Fu,Jun Zhao
#t2006
#cCybernetics and Systems
#index783035
#% 
#!
  
#*Pattern Recognition Approaches for Speech-To-Speech Translation.
#@Francisco Casacuberta,Enrique Vidal,Alberto Sanchís,Juan Miguel Vilar
#t2004
#cCybernetics and Systems
#index783036
#% 
#!
  
#*Modeling Context In Punjabi Conflict Resolution: Social Organizations As Context Agents.
#@Stephen Lyon
#t2004
#cCybernetics and Systems
#index783037
#% 
#!
  
#*Forecasting Enrollments Based on High-Order Fuzzy Time Series.
#@Shyi-Ming Chen
#t2002
#cCybernetics and Systems
#index783038
#% 
#!
  
#*Culture and information: an anthropological examination of communication in cultural domains in Pakistan.
#@Stephen M. Lyon
#t2005
#cCybernetics and Systems
#index783039
#% 
#!
  
#*A New Method For Handling Multicriteria Fuzzy Decision-Making Problems Using FN-Iowa Operators.
#@Shi-Jay Chen,Shyi-Ming Chen
#t2003
#cCybernetics and Systems
#index783040
#% 
#!
  
#*Formal considerations of rule-based messaging for business process integration.
#@Dat C. Ma,Maria E. Orlowska,Shazia Wasim Sadiq
#t2006
#cCybernetics and Systems
#index783041
#% 
#!
  
#*Aggregating Fuzzy Opinions In The Heterogeneous Group Decision-Making Environment.
#@Shi-Jay Chen,Shyi-Ming Chen
#t2005
#cCybernetics and Systems
#index783042
#% 
#!
  
#*Automatic Classification Of Neural Spike Activity: An Application Of Minimum Distance Classifiers.
#@Vito Di Maio,Fortunato Marciano
#t2003
#cCybernetics and Systems
#index783043
#% 
#!
  
#*A new method to construct membership functions and generate weighted fuzzy rules from training instances.
#@Shyi-Ming Chen,Chi-Hao Chang
#t2005
#cCybernetics and Systems
#index783044
#% 
#!
  
#*Multiagent System for Condition-Monitoring Applications.
#@Eleni E. Mangina,Stephen D. J. McArthur,James R. McDonald
#t2002
#cCybernetics and Systems
#index783045
#% 
#!
  
#*Generating Fuzzy Rules From Training Data Containing Noise For Handling Classification Problems.
#@Shyi-Ming Chen,Cheng-Hsuan Kao,Cheng-Hao Yu
#t2002
#cCybernetics and Systems
#index783046
#% 
#!
  
#*Dealing with Color Changes Caused by Natural Illumination in Outdoor Machine Vision.
#@John A. Marchant,N. D. Tillett,Christine M. Onyango
#t2004
#cCybernetics and Systems
#index783047
#% 
#!
  
#*A New Method for Fuzzy Query Processing in Relational Database Systems.
#@Shyi-Ming Chen,Yun-Shyang Lin
#t2002
#cCybernetics and Systems
#index783048
#% 
#!
  
#*Two-Dimensional-Three-Dimensional Correspondence in Mammography.
#@Robert Marti,Reyer Zwiggelaar,Caroline M. E. Rubin,Erika R. E. Denton
#t2004
#cCybernetics and Systems
#index783049
#% 
#!
  
#*A New Method To Generate Fuzzy Rules From Relational Database Systems For Estimating Null Values.
#@Shyi-Ming Chen,Shih-Wei Lee
#t2003
#cCybernetics and Systems
#index783050
#% 
#!
  
#*Growing up: emerging complexity in living being.
#@Giovanna Morgavi,Mauro Morando,Grazia Biorci,Daniele D. Caviglia
#t2005
#cCybernetics and Systems
#index783051
#% 
#!
  
#*Estimating Null Values In Relational Database Systems Based On Genetic Algorithms.
#@Shyi-Ming Chen,Shih-Wei Lee
#t2005
#cCybernetics and Systems
#index783052
#% 
#!
  
#*The Web, The Public, and the Global Warming Debate.
#@Patrick Moriarty,Damian Kennedy
#t2004
#cCybernetics and Systems
#index783053
#% 
#!
  
#*Significant fuzzy rules extraction by an SVD-QR-based approach.
#@Chia-Chong Chen,Ching-Chang Wong
#t2005
#cCybernetics and Systems
#index783054
#% 
#!
  
#*Informal Systems Thinking Or Systems Theory.
#@Matjaz Mulej,Majda Bastic,Janko Belak,Jozica Knez-Riedl,Marjan Pivka,Vojko Potocan,Miroslav Rebernik,Dusko Ur,Zdenka Zenko,Nastja Mulej
#t2003
#cCybernetics and Systems
#index783055
#% 
#!
  
#*A New Method To Generate Fuzzy Rules From Training Instances For Handling Classification Problems.
#@Shyi-Ming Chen,Cheng-Hao Yu
#t2003
#cCybernetics and Systems
#index783056
#% 
#!
  
#*Increasing the capacity of companies to absorb inventions from research organizations and encouraging people to innovate.
#@Matjaz Mulej,Borut Likar,Vojko Potocan
#t2005
#cCybernetics and Systems
#index783057
#% 
#!
  
#*Adaptive-improved genetic algorithm for the economic dispatch of units with multiple fuel options.
#@Chao-Lung Chiang,Ching-Tzong Su
#t2005
#cCybernetics and Systems
#index783058
#% 
#!
  
#*Information Filtering For Emergency Management.
#@Shogo Nishida,Mie Nakatani,Takashi Koiso,Yusuke Atoji
#t2003
#cCybernetics and Systems
#index783059
#% 
#!
  
#*Adaptation Based on Memory Dynamics in a Chaotic Neural Network.
#@Nigel Crook,Tjeerd Olde Scheper
#t2002
#cCybernetics and Systems
#index783060
#% 
#!
  
#*Computational methods through genetic algorithms for obtaining stackelberg solutions to two-level integer programming problems.
#@Ichiro Nishizaki,Masatoshi Sakawa
#t2005
#cCybernetics and Systems
#index783061
#% 
#!
  
#*Thyrotropic Feedback Control: Evidence For An Additional Ultrashort Feedback Loop From Fractal Analysis.
#@J. W. Dietrich,A. Tesche,C. R. Pickardt,U. Mitzdorf
#t2004
#cCybernetics and Systems
#index783062
#% 
#!
  
#*About the Authors.
#@Ephraim Nissan
#t2003
#cCybernetics and Systems
#index783063
#% 
#!
  
#*Maximal Consistency, Theory of Evidence, and Bayesian Conditioning in the Investigative Domain.
#@Aldo Franco Dragoni,Samuele Animali
#t2003
#cCybernetics and Systems
#index783064
#% 
#!
  
#*Identification and Doing without It, I: A Situational Classification of Misapplied Personal Identity, with a Formalism for a Case of Multiple Usurped Identity in Marivaux.
#@Ephraim Nissan
#t2003
#cCybernetics and Systems
#index783065
#% 
#!
  
#*Two-Layer Stabilization of Continuous Neural Networks with Feedbacks.
#@Evgeny E. Dudnikov
#t2002
#cCybernetics and Systems
#index783066
#% 
#!
  
#*Identification and Doing without It, II: Visual Evidence for Pinpointing Identity. How Alexander Was Found Out: Purposeful Action, Enlisting Support, Assumed Identity, and Recognition. A Goal-Driven Formal Analysis.
#@Ephraim Nissan
#t2003
#cCybernetics and Systems
#index783067
#% 
#!
  
#*Computing anticipatory property in stochastic differential systems.
#@Yasushi Endow
#t2005
#cCybernetics and Systems
#index783068
#% 
#!
  
#*Facets of Abductive Reasoning.
#@Ephraim Nissan
#t2003
#cCybernetics and Systems
#index783069
#% 
#!
  
#*Environmental management revisited: lessons from a cybernetic intervention in colombia.
#@A. Espinosa,J. Walker
#t2006
#cCybernetics and Systems
#index783070
#% 
#!
  
#*Identification and Doing Without It, III: Authoritative Opinions, Purposeful Action, Relabeled Goods, and Forensic Examinations. The Case of the Stuffed Birds: Its Narrative Dynamics Set in Formulae.
#@Ephraim Nissan
#t2003
#cCybernetics and Systems
#index783071
#% 
#!
  
#*Parameter Settings and Representations in Pareto-Based Optimization for Job Shop Scheduling.
#@Susana C. Esquivel,S. W. Ferrero,Raúl Héctor Gallard
#t2002
#cCybernetics and Systems
#index783072
#% 
#!
  
#*Identification and Doing Without It, IV: A Formal Mathematical Analysis for the Feveroles Case, of Mix-Up of Kinds and Ensuing Litigation; and a Formalism for the "Cardiff Giant" Double Hoax.
#@Ephraim Nissan
#t2003
#cCybernetics and Systems
#index783073
#% 
#!
  
#*The Principles of Cognitive Relativity, Rationality and Clarity: Application to Cultural Theory.
#@Irina V. Ezhkova
#t2004
#cCybernetics and Systems
#index783074
#% 
#!
  
#*Building Blocks for an Artificial Intelligence Framework in the Field of Legal Evidence, Part I.
#@Ephraim Nissan,Antonio A. Martino
#t2003
#cCybernetics and Systems
#index783075
#% 
#!
  
#*Self-organizing representations.
#@Irina V. Ezhkova
#t2005
#cCybernetics and Systems
#index783076
#% 
#!
  
#*Identification and Doing Without It, V: A Formal Mathematical Analysis for a Case of Mix-Up of Individuals, and of Recovery from Failure to Attain Identification.
#@Ephraim Nissan,Jixin Ma
#t2003
#cCybernetics and Systems
#index783077
#% 
#!
  
#*Job Sequencing in an Evolutionary Paradigm.
#@Zoheir Ezziane
#t2002
#cCybernetics and Systems
#index783078
#% 
#!
  
#*Hybrid Trajectory Planning Using Reinforcement and Backpropagation through Time Techniques.
#@Ahmad M. Al-Fahed Nuseirat,Raed Abu Zitar
#t2003
#cCybernetics and Systems
#index783079
#% 
#!
  
#*Sustainable Urban Transportation: A Model-Based Approach.
#@Kurt Fedra
#t2004
#cCybernetics and Systems
#index783080
#% 
#!
  
#*The Genetic Design Of Hybrid Fuzzy Controllers.
#@Sung-Kwun Oh,Dae-Keun Lee,Witold Pedrycz,Dong-Hwa Kim
#t2004
#cCybernetics and Systems
#index783081
#% 
#!
  
#*Self-generation fuzzy modeling systems through hierarchical recursive-based particle swarm optimization.
#@Hsuan-Ming Feng
#t2005
#cCybernetics and Systems
#index783082
#% 
#!
  
#*Soft Modeling Support for Managing Knowledge-Based Information Technology (IT) Projects.
#@Cezary Orlowski
#t2002
#cCybernetics and Systems
#index783083
#% 
#!
  
#*Integrating Anthropological Approaches to the Study of Culture: The "Hard" and the "Soft".
#@Michael Fischer
#t2004
#cCybernetics and Systems
#index783084
#% 
#!
  
#*Evaluation of Information Technology Projects.
#@Cezary Orlowski,Edward Szczerbicki
#t2002
#cCybernetics and Systems
#index783085
#% 
#!
  
#*Culture and indigenous knowledge systems: emergent order and the internal regulation of shared symbolic systems.
#@Michael D. Fischer
#t2005
#cCybernetics and Systems
#index783086
#% 
#!
  
#*Forecasting fuzzy time series on a heuristic high-order model.
#@Chung-Ming Own,Pao-Ta Yu
#t2005
#cCybernetics and Systems
#index783087
#% 
#!
  
#*Introduction.
#@Michael D. Fischer,Dwight W. Read,Stephen M. Lyon
#t2005
#cCybernetics and Systems
#index783088
#% 
#!
  
#*Ergonomic issues of the neural integrated human-computer interaction.
#@Leszek Pacholski
#t2006
#cCybernetics and Systems
#index783089
#% 
#!
  
#*A Web-Based Multi-Agent System for Transportation Management to Protect Our Natural Environment.
#@Hubertus Franke,Wilhelm Dangelmaier
#t2004
#cCybernetics and Systems
#index783090
#% 
#!
  
#*Studs Mating Immigrants in Evolutionary Algorithm to Solve the Earliness-Tardiness Scheduling Problem.
#@D. Pandolfi,G. Vilanova,M. De San Pedro,A. Villagra,Raúl Héctor Gallard
#t2002
#cCybernetics and Systems
#index783091
#% 
#!
  
#*an epidemiological model of knowledge diffusion in virtual learning networks: an application to learning statistics in medicine.
#@Umberto Giani,Angela Romano,Dario Bruzzese
#t2005
#cCybernetics and Systems
#index783092
#% 
#!
  
#*Taking Agents Seriously.
#@Michael Perloff
#t2003
#cCybernetics and Systems
#index783093
#% 
#!
  
#*Data Defects In Material Flow Networks--Classification And Approaches.
#@Jorge Marx Gómez,Silke Prötzsch,Claus Rautenstrauch
#t2004
#cCybernetics and Systems
#index783094
#% 
#!
  
#*Requisitely Holistic ISO 9000 Audit Leads To Continuous Innovation/Improvement.
#@Marjan Pivka,Matjaz Mulej
#t2004
#cCybernetics and Systems
#index783095
#% 
#!
  
#*Aspiration Levels in a Land Use Simulation.
#@Nicholas Mark Gotts,J. Gareth Polhill,Alistair N. R. Law
#t2003
#cCybernetics and Systems
#index783096
#% 
#!
  
#*An Approach to Trip- and Route-Planning Problems.
#@Georgii Khachaturov
#t2002
#cCybernetics and Systems
#index783097
#% 
#!
  
#*Simple Fuzzy Grid Partition for Mining Multiple-level Fuzzy Sequential Patterns.
#@Yi-Chung Hu
#t2007
#cCybernetics and Systems
#index783098
#%176601
#%299377
#%642536
#%776236
#%879795
#%921547
#%1044691
#%1063624
#%1063492
#%1112801
#!
  
#*Development of a knowledge-based economy in Poland.
#@Wieslaw M. Grudzewski,Irena K. Hejduk,Ewa Starbala
#t2006
#cCybernetics and Systems
#index783099
#% 
#!
  
#*Automatic Music Transcription and Audio Source Separation.
#@Mark D. Plumbley,Samer A. Abdallah,Juan Pablo Bello,Mike E. Davies,Giuliano Monti,Mark B. Sandler
#t2002
#cCybernetics and Systems
#index783100
#% 
#!
  
#*A Comparative Study of Contextual Segmentation Methods for Digital Angiogram Analysis.
#@Miguel Ángel Patricio Guisado,Darío Maravall Gómez-Allende
#t2004
#cCybernetics and Systems
#index783101
#% 
#!
  
#*Adaptive LVQ Classifier for Invariant Face Recognition.
#@Gulzar A. Khuwaja
#t2003
#cCybernetics and Systems
#index783102
#% 
#!
  
#*Inference In Gompertz-Type Nonhomogeneous Stochastic Systems By Means Of Discrete Sampling.
#@Ramón Gutiérrez Jáimez,Ramón Gutiérrez-Sánchez,Ahmed Nafidi,Patricia Román,F. Torres
#t2005
#cCybernetics and Systems
#index783103
#% 
#!
  
#*Editorial Retraction.
#@
#t2006
#cCybernetics and Systems
#index783104
#% 
#!
  
#*"We Can Never Know What Goes On In Somebody Else's Head": Ernst Von Glasersfeld On Truth And Viability, Language And Knowledge, And The Premises Of Constructivist Education.
#@Bernhard Poerksen
#t2004
#cCybernetics and Systems
#index783105
#% 
#!
  
#*Finding Underlying Factors in Timeseries.
#@Ying Han,Colin Fyfe
#t2002
#cCybernetics and Systems
#index783106
#% 
#!
  
#*Visual Search Characterized by New Metrics for Scaling and Analysis.
#@Claudio M. Privitera,Lawrence W. Stark
#t2003
#cCybernetics and Systems
#index783107
#% 
#!
  
#*Induction of Knowledge Using Evolutionary Rough Set Theory.
#@Yasser Hassan,Eiichiro Tazaki
#t2003
#cCybernetics and Systems
#index783108
#% 
#!
  
#*New learning method for cellular neural networks template based on combination between rough sets and genetic programming.
#@Elsayed Radwan,Eiichiro Tazaki
#t2005
#cCybernetics and Systems
#index783109
#% 
#!
  
#*on the "globality hypothesis" about social/cultural structure: an algebraic solution.
#@F. K. L. Chit Hlaing
#t2005
#cCybernetics and Systems
#index783110
#% 
#!
  
#*Active vs. Passive Approaches to Intelligent Program Diagnosis.
#@Haider Ali Ramadhan,Khalil Shihab
#t2002
#cCybernetics and Systems
#index783111
#% 
#!
  
#*Evaluation of Environmental Impact of Air pollution Sources.
#@Piotr Holnicki
#t2004
#cCybernetics and Systems
#index783112
#% 
#!
  
#*Perspectives On The History Of The Cybernetics Movement: The Path To Current Research Through The Contributions Of Norbert Wiener, Warren Mcculloch, and John von Neumann.
#@Yehuda Rav
#t2002
#cCybernetics and Systems
#index783113
#% 
#!
  
#*On the Zero Decoupling Structures of Cascade-parallel Interconnected Systems.
#@M. De La Sen
#t1999
#cCybernetics and Systems
#index783114
#% 
#!
  
#*A Gis And Web-Based Decision Support Tool For The Management Of Urban Soils.
#@Iain Hossack,Douglas Robertson,Peter Tucker,Andrew Hursthouse,Colin Fyfe
#t2004
#cCybernetics and Systems
#index783115
#% 
#!
  
#*Texture Algorithms: Performance Variability Across Data Sets.
#@Maneesha Singh,Sameer Singh
#t2003
#cCybernetics and Systems
#index783116
#% 
#!
  
#*A new fuzzy-data mining method for pattern classification by principal component analysis.
#@Yi-Chung Hu
#t2005
#cCybernetics and Systems
#index783117
#% 
#!
  
#*Introduction.
#@Dwight W. Read
#t2004
#cCybernetics and Systems
#index783118
#% 
#!
  
#*Multivariable Fuzzy Generalized Predictive Control.
#@Huaguang Zhang,Lilong Cai
#t2002
#cCybernetics and Systems
#index783119
#% 
#!
  
#*Panel Discussion.
#@Dwight W. Read
#t2004
#cCybernetics and Systems
#index783120
#% 
#!
  
#*Fuzzy Adaptive Control of Nonlinear Processes with Feedforward Compensator and its Application.
#@Huaguang Zhang,Ming Li,Lilong Cai
#t2002
#cCybernetics and Systems
#index783121
#% 
#!
  
#*Mathematical Modeling Issues in Analytical Representations of Human Societies.
#@Dwight W. Read
#t2004
#cCybernetics and Systems
#index783122
#% 
#!
  
#*A Self-Improving Fuzzy Cerebellar Model Articulation Controller with Stochastic Action Generation.
#@Kao-Shing Hwang,Yuan-Pao Hsu
#t2002
#cCybernetics and Systems
#index783123
#% 
#!
  
#*Some observations on resilience and robustness in human systems.
#@Dwight W. Read
#t2005
#cCybernetics and Systems
#index783124
#% 
#!
  
#*Forecasting for the Univariate Lognormal Diffusion Process with Exogenous Factors.
#@Ramón Gutiérrez Jáimez,Patricia Román,Desirée Romero Molina,Francisco Torres Ruiz
#t2003
#cCybernetics and Systems
#index783125
#% 
#!
  
#*Review of Intelligent Software Architectures for the Development of An Intelligent Decision Support System for Design Process Planning in Concurrent Engineering.
#@C. Reidsema,Edward Szczerbicki
#t2002
#cCybernetics and Systems
#index783126
#% 
#!
  
#*A Method of Managing Complex Fuzzy Information.
#@Neng-Liang Jeang,Ying-Kuei Yang
#t2002
#cCybernetics and Systems
#index783127
#% 
#!
  
#*Cultural algorithms: computational modeling of how cultures learn to solve problems: an engineering example.
#@Robert G. Reynolds,Bin Peng
#t2005
#cCybernetics and Systems
#index783128
#% 
#!
  
#*Multivariable Fuzzy PID Control System for Deaerator's and Condenser's Levels in a Thermal Powerunit.
#@Lu Jianhong,Chen Laijiu,Zhao Sujin,Wu Yiqian
#t2002
#cCybernetics and Systems
#index783129
#% 
#!
  
#*The relationship of control and learning to project performance.
#@Gary Klein,Peggy M. Beranek,Ben Martz,James J. Jiang
#t2006
#cCybernetics and Systems
#index783130
#% 
#!
  
#*Quality-Of-Service Adaptive Control Of Multimedia Services In Short-Term Resource Reservation Networks.
#@George A. Rovithakis,Athanasios G. Malamos,Theodora A. Varvarigou,Manolis A. Christodoulou
#t2005
#cCybernetics and Systems
#index783131
#% 
#!
  
#*On the nature of culture and communication: a complex systems perspective.
#@Jürgen Klüver,Christina Stoica
#t2005
#cCybernetics and Systems
#index783132
#% 
#!
  
#*Management of information changes by the use of software agents.
#@Jarogniew Rykowski
#t2006
#cCybernetics and Systems
#index783133
#% 
#!
  
#*Design Of Knowledge-Based Systems In Environmental Engineering.
#@Zdzislaw Kowalczuk,Cezary Orlowski
#t2004
#cCybernetics and Systems
#index783134
#% 
#!
  
#*Extending set of experience knowledge structure into a transportable language extensible markup language.
#@Cesar Sanín,Edward Szczerbicki
#t2006
#cCybernetics and Systems
#index783135
#% 
#!
  
#*An Agent-Based Approach to Cultural (and Linguistic) Change.
#@David Kronenfeld
#t2004
#cCybernetics and Systems
#index783136
#% 
#!
  
#*Modeling A Control System For Organizational Processes.
#@Markus Schwaninger,Stephen G. Powell,Chris Trimble
#t2002
#cCybernetics and Systems
#index783137
#% 
#!
  
#*Culture, cultural models, and the division of labor.
#@David Kronenfeld,Kimberly Hedrick
#t2005
#cCybernetics and Systems
#index783138
#% 
#!
  
#*Sufficient Conditions For f-Stability Of Linear Time-Delay Systems.
#@Manuel de la Sen
#t2002
#cCybernetics and Systems
#index783139
#% 
#!
  
#*Fuzzy Sliding Mode Control Systems with Adaptive Estimation.
#@Xinghuo Yu,Zhihong Man
#t1999
#cCybernetics and Systems
#index783140
#% 
#!
  
#*Why you should use a relational database instead of a spreadsheet.
#@Birgitta Krüger
#t2004
#cCybernetics and Systems
#index783141
#% 
#!
  
#*Robustly Stable Model-Following Control Of Uncertain Continuous Time Plants With The Use Of A Correcting Controller.
#@Manuel de la Sen
#t2005
#cCybernetics and Systems
#index783142
#% 
#!
  
#*Voltage/reactive Power Control via Fuzzy Linear Programming Approach.
#@Ching-Tzong Su,Chien-Tung Lin
#t1999
#cCybernetics and Systems
#index783143
#% 
#!
  
#*What is "Formal" Analysis?
#@Murray Leaf
#t2004
#cCybernetics and Systems
#index783144
#% 
#!
  
#*Adaptive Control Of Manipulators With Improved Adaptation Transients By Using On-Line Supervision Of The Free-Parameters Of The Adaptation Algorithm And Of The Sampling Rate.
#@Manuel de la Sen,Ana Almansa
#t2002
#cCybernetics and Systems
#index783145
#% 
#!
  
#*Cultural Systems and Organizational Processes: Observations on the Conference Papers.
#@Murray Leaf
#t2004
#cCybernetics and Systems
#index783146
#% 
#!
  
#*A Reinforcement Learning Approach To Congestion Control Of High-Speed Multimedia Networks.
#@Ming-Chang Shaio,Shun-Wen Tan,Kao-Shing Hwang,Cheng-Shong Wu
#t2005
#cCybernetics and Systems
#index783147
#% 
#!
  
#*The message is the medium: language, culture, and informatics.
#@Murray Leaf
#t2005
#cCybernetics and Systems
#index783148
#% 
#!
  
#*Organizational memory: three experiments on the quality of information.
#@Morgan M. Shepherd,Wm. Benjamin Martz Jr.
#t2006
#cCybernetics and Systems
#index783149
#% 
#!
  
#*Why Model?
#@S. E. van der Leeuw
#t2004
#cCybernetics and Systems
#index783150
#% 
#!
  
#*A topsis-based centroid-index ranking method of fuzzy numbers and its application in decision-making.
#@Deng Yong,Liu Qi
#t2005
#cCybernetics and Systems
#index783151
#% 
#!
  
#*Obituary: Marco Somalvico (1941-2002).
#@
#t2003
#cCybernetics and Systems
#index783152
#% 
#!
  
#*A comparison of some fuzzy relation-based linguistic preference models for multiple-factor project assessment.
#@P. N. Smith
#t2005
#cCybernetics and Systems
#index783153
#% 
#!
  
#*Flexible aggregation in multiple attribute decision making: application to the kuranda range road upgrade.
#@P. N. Smith
#t2006
#cCybernetics and Systems
#index783154
#% 
#!
  
#*A Note On Fuzzy Time Series Model Selection With Sample Autocorrelation Functions.
#@Qiang Song
#t2003
#cCybernetics and Systems
#index783155
#% 
#!
  
#*Practical Intelligent Support for Rule Discovery in Fault Management Systems.
#@Roy Sterritt,David W. Bustard
#t2002
#cCybernetics and Systems
#index783156
#% 
#!
  
#*Special Issue on Soft Computing and Intelligent Systems for Industry - Volume I: Advances in Soft Modeling Techniques and Decision Support.
#@Edward Szczerbicki
#t2002
#cCybernetics and Systems
#index783157
#% 
#!
  
#*Soft Modeling Support for Information Management.
#@Edward Szczerbicki
#t2002
#cCybernetics and Systems
#index783158
#% 
#!
  
#*Editorial.
#@Edward Szczerbicki
#t2002
#cCybernetics and Systems
#index783159
#% 
#!
  
#*Integration Platform For Multi-Agent Systems In Information-Rich Environments.
#@Edward Szczerbicki
#t2004
#cCybernetics and Systems
#index783160
#% 
#!
  
#*Guest Editorial Systems Modeling and Simulation for Environmental Management.
#@Edward Szczerbicki
#t2004
#cCybernetics and Systems
#index783161
#% 
#!
  
#*Information and knowledge management: advances, approaches, challenges, and critical issues.
#@Edward Szczerbicki
#t2006
#cCybernetics and Systems
#index783162
#% 
#!
  
#*Concurrent Engineering Design for Environment.
#@Edward Szczerbicki,Mark Drinkwater
#t2004
#cCybernetics and Systems
#index783163
#% 
#!
  
#*Descriptive Modeling Of Virtual Transactions.
#@Edward Szczerbicki,Maciej Waszczyk
#t2004
#cCybernetics and Systems
#index783164
#% 
#!
  
#*Web Information Monitoring for Competitive Intelligence.
#@Bing Tan,Schubert Foo,Siu Cheung Hui
#t2002
#cCybernetics and Systems
#index783165
#% 
#!
  
#*An asp-based model employing a tabu search method for making e-logistics decisions.
#@Christos D. Tarantilis
#t2006
#cCybernetics and Systems
#index783166
#% 
#!
  
#*Regulation problems in explorer agents.
#@Elpida Tzafestas
#t2005
#cCybernetics and Systems
#index783167
#% 
#!
  
#*Epistemological and Mathematical Considerations on the Structure of H-Semiotic Systems.
#@Josep Lluis Usó-Domènech,Miguel Lloret-Climent,Francisco Vives-Macià,Bernard C. Patten,Patricia Sastre-Vázquez
#t2002
#cCybernetics and Systems
#index783168
#% 
#!
  
#*Image analysis and fuzzy integration applied to print quality assessment.
#@Antanas Verikas,Marija Bacauskiene
#t2005
#cCybernetics and Systems
#index783169
#% 
#!
  
#*Notional Logic of Systems.
#@Yolanda Villacampa-Esteve,M. A. Castro-Lopez,Josep Lluis Usó-Domènech,Patricia Sastre-Vázquez
#t2002
#cCybernetics and Systems
#index783170
#% 
#!
  
#*Control Systems Design Driven by Worst-Initial-Energy Sensitivity.
#@Alexander Weinmann
#t2003
#cCybernetics and Systems
#index783171
#% 
#!
  
#*A dialog-oriented and gradient-based stability margin in uncertain systems.
#@Alexander Weinmann
#t2005
#cCybernetics and Systems
#index783172
#% 
#!
  
#*Network Analysis and Social Dynamics.
#@Douglas White
#t2004
#cCybernetics and Systems
#index783173
#% 
#!
  
#*Design Of Fuzzy Systems With Fewer Rules.
#@Ching-Chang Wong,Hsuan-Ming Feng
#t2003
#cCybernetics and Systems
#index783174
#% 
#!
  
#*Fuzzy System Design by a GA-Based Method for Data Classification.
#@Ching-Chang Wong,Bo-Chen Lin,Chia-Chong Chen
#t2002
#cCybernetics and Systems
#index783175
#% 
#!
  
#*Simulation Modelling for Complex Production Systems.
#@Edward Szczerbicki
#t2000
#cCybernetics and Systems
#index783176
#% 
#!
  
#*A Modified Aggregation Of Fuzzy Opinions Under Group Decision Making.
#@Deng Yong,Shi Wen-Kang
#t2003
#cCybernetics and Systems
#index783177
#% 
#!
  
#*A Robust Terminal Sliding Composite Adaptive Control Scheme for Rigid Robots.
#@Oscar Barambones,Victor Etxebarria
#t2000
#cCybernetics and Systems
#index783178
#% 
#!
  
#*Two Conceptions of Relevance.
#@Jonathan Yovel
#t2003
#cCybernetics and Systems
#index783179
#% 
#!
  
#*Virtual Communities and their Network Support: a Cybernetic Analysis.
#@G. J. Marshall
#t2000
#cCybernetics and Systems
#index783180
#% 
#!
  
#*A Reduced-Order Photochemical Air Quality Model.
#@Daniel S. Zachary,Alain Haurie,Irina Sivergina
#t2004
#cCybernetics and Systems
#index783181
#% 
#!
  
#*Estimating Null Values in the Distributed Relational Databases Environment.
#@Shyi-Ming Chen,Hsin-Horng Chen
#t2000
#cCybernetics and Systems
#index783182
#% 
#!
  
#*Mining Dependent Patterns In Probabilistic Databases.
#@Shichao Zhang,Chengqi Zhang,Jeffrey Xu Yu
#t2004
#cCybernetics and Systems
#index783183
#% 
#!
  
#*Obituary Robbin R. Hough, 1933-1999.
#@John W. Henke Jr.
#t2000
#cCybernetics and Systems
#index783184
#% 
#!
  
#*On Unbiased Parameter Estimation Of Linear Systems Using Noisy Measurements.
#@Wei Xing Zheng
#t2003
#cCybernetics and Systems
#index783185
#% 
#!
  
#*Firing Sequences and Firing Frequencies Estimation for Timed Petri Nets.
#@Dimitri Lefebvre
#t2000
#cCybernetics and Systems
#index783186
#% 
#!
  
#*A Biologically Inspired Hierarchical Reinforcement Learning System.
#@Weidong Zhou,Richard Coggins
#t2005
#cCybernetics and Systems
#index783187
#% 
#!
  
#*Robust Adaptive Control for Robot Manipulators with Unmodelled Dynamics.
#@Oscar Barambones,Victor Etxebarria
#t2000
#cCybernetics and Systems
#index783188
#% 
#!
  
#*Computational Intelligence And Environmental Planning.
#@Hans-Jürgen Zimmermann
#t2004
#cCybernetics and Systems
#index783189
#% 
#!
  
#*Searching for Patterns in Political Event Sequences: Experiments with the Keds Database.
#@Klaus Kovar,Johannes Fürnkranz,Johann Petrak,Bernhard Pfahringer,Robert Trappl,Gerhard Widmer
#t2000
#cCybernetics and Systems
#index783190
#% 
#!
  
#*Performance Evaluation of Genetic Algorithms and Evolutionary Programming in Optimization and Machine Learning.
#@Raed Abu Zitar,Ahmad M. Al-Fahed Nuseirat
#t2002
#cCybernetics and Systems
#index783191
#% 
#!
  
#*A Knowledge Base for Intelligent Information Management.
#@Edward Szczerbicki
#t2006
#cCybernetics and Systems
#index783192
#% 
#!
  
#*Supply System Dynamics: Distributed Control in Supply Chains and Networks.
#@Markus Schwaninger,Peter Vrhovec
#t2006
#cCybernetics and Systems
#index783193
#% 
#!
  
#*Robustness Gradients for Discrete-time Control Systems.
#@Alexander Weinmann
#t2006
#cCybernetics and Systems
#index783194
#% 
#!
  
#*Approximating the Nonhomogeneous Lognormal Diffusion Process via Polynomial Exogenous Factors.
#@Ramón Gutiérrez Jáimez,N. Rico,Patricia Román,D. Romero,J. J. Serrano,F. Torres
#t2006
#cCybernetics and Systems
#index783195
#% 
#!
  
#*Design of a Fuzzy Min-max Hyperbox Classifier Using a Supervised Learning Method.
#@Chia-Chong Chen
#t2006
#cCybernetics and Systems
#index783196
#% 
#!
  
#*Knowledge Management, Knowledge Discovery, and Dynamic Intelligent Data Mining.
#@H.-J. Zimmermann
#t2006
#cCybernetics and Systems
#index783197
#% 
#!
  
#*Layer Types: a Concept for Modeling Arrays of Communicating Objects.
#@Gerd Kock
#t2006
#cCybernetics and Systems
#index783198
#% 
#!
  
#*A Deep Improver of Two-move Chess Mate Problems.
#@Yaakov HaCohen-Kerner,Fridel Fainshtein
#t2006
#cCybernetics and Systems
#index783199
#% 
#!
  
#*Adaptive Hyper-fuzzy Partition Particle Swarm Optimization Clustering Algorithm.
#@Hsuan-Ming Feng,Ching-Yi Chen,Fun Ye
#t2006
#cCybernetics and Systems
#index783200
#% 
#!
  
#*A Pso-based Multivariable Fuzzy Decision-making Predictive Controller for a Once-through 300-MW Power Plant.
#@Tiejun Zhang,Jianhong Lu
#t2006
#cCybernetics and Systems
#index783201
#% 
#!
  
#*An Integrated Intelligent Design Advisor System in Engineering Design.
#@Quangang Yang,Carl Allen Reidsema
#t2006
#cCybernetics and Systems
#index783202
#% 
#!
  
#*A Multiagent Environment for the Flexible Enactment of Knowledge-intensive Processes.
#@Katja Bayer,Sonja Kempf,Holger Brocks,Thomas Kamps
#t2006
#cCybernetics and Systems
#index783203
#% 
#!
  
#*The Use of Data Mining to Predict Web Performance.
#@Leszek Borzemski
#t2006
#cCybernetics and Systems
#index783204
#% 
#!
  
#*Intelligent Information, Knowledge, and Technology Management.
#@Edward Szczerbicki
#t2006
#cCybernetics and Systems
#index783205
#% 
#!
  
#*Developing Heterogeneous Similarity Metrics for Knowledge Administration.
#@Cesar Sanín,Edward Szczerbicki
#t2006
#cCybernetics and Systems
#index783206
#% 
#!
  
#*A Mixed Integer Dynamic Programming Approach to a Class of Optimal Control Problems in Hybrid Systems.
#@Nejib Ben Hadj-Alouane,Mohamed Moez Yeddes,Atidel B. Hadj-Alouane,Feng Lin
#t2006
#cCybernetics and Systems
#index783207
#% 
#!
  
#*Anomaly Detection in Distributed Computer Communication Systems.
#@Adam Grzech
#t2006
#cCybernetics and Systems
#index783208
#% 
#!
  
#*The Information Density of Literary Works Through History.
#@Peter Kokol,Marko Kokol,Petra Kokol
#t2006
#cCybernetics and Systems
#index783209
#% 
#!
  
#*A Team-oriented Cybernetic Approach for Value-added Quality Auditing.
#@Türkay Dereli,Adil Baykasoglu
#t2006
#cCybernetics and Systems
#index783210
#% 
#!
  
#*Organizational Benefits of Communities of Practice: a Two-stage Information Processing Model.
#@Katja Zboralski,Soeren Salomo,Hans Georg Gemuenden
#t2006
#cCybernetics and Systems
#index783211
#% 
#!
  
#*An Analytical Development of a Universal Displacement Measurement System for Ultra-precision Metrology.
#@Suresh V. Venna,Yueh-Jaw Lin
#t2006
#cCybernetics and Systems
#index783212
#% 
#!
  
#*A Pso-based Method for Extracting Fuzzy Rules Directly from Numerical Data.
#@Chia-Chong Chen
#t2006
#cCybernetics and Systems
#index783213
#% 
#!
  
#*Employee Diversity Management in the Context of Dialectial Systems Theory.
#@Sonja Treven,Matjaz Mulej
#t2006
#cCybernetics and Systems
#index783214
#% 
#!
  
#*A Self-organizing Quantum Neural Fuzzy Network and its Applications.
#@Cheng-Jian Lin,Cheng-Hung Chen
#t2006
#cCybernetics and Systems
#index783215
#% 
#!
  
#*Performance Evaluation of Open Queueing Networks with Fuzzy Parameters.
#@Shih-Pin Chen
#t2006
#cCybernetics and Systems
#index783216
#% 
#!
  
#*Simulating Structural Change in Adaptive Organizations.
#@Oswaldo Terán,Juan de Lara,Manuel Alfonseca,José Lisandro Aguilar,Ana C. Muñoz
#t2006
#cCybernetics and Systems
#index783217
#% 
#!
  
#*Data Clustering Using a Reorganizing Neural Network.
#@Dragan Kukolj,Branislav Atlagic,Milovan Petrov
#t2006
#cCybernetics and Systems
#index783218
#% 
#!
  
#*A Robust Approach of Fuzzy Clustering on Data Sets with Noise and Outliers.
#@Horng-Lin Shieh,Ying-Kuei Yang,Chien-Nan Lee
#t2006
#cCybernetics and Systems
#index783219
#% 
#!
  
#*Dynamic Fuzzy Owa Model for Evaluating the Risks of Software Development.
#@Ching-Hsue Cheng,Jing-Rong Chang,Tien-Hwa Ho
#t2006
#cCybernetics and Systems
#index783220
#% 
#!
  
#*Stability Margin and Spherical Uncertainty.
#@Alexander Weinmann
#t2006
#cCybernetics and Systems
#index783221
#% 
#!
  
#*Dissimilar Sets of Experience Knowledge Structure: a Negotiation Process for Decisional Dna.
#@Cesar Sanín,Edward Szczerbicki
#t2007
#cCybernetics and Systems
#index783222
#% 
#!
  
#*Reactive Tuning of Target Estimate Accuracy in Multisensor Data Fusion.
#@Ning Xiong,Henrik Christensen,Per Svensson
#t2007
#cCybernetics and Systems
#index783223
#% 
#!
  
#*Knowledge Management Based on Formal Models of Software Project Management.
#@Zdzislaw Kowalczuk,Cezary Orlowski
#t2007
#cCybernetics and Systems
#index783224
#% 
#!
  
#*Design Information Handling in a Knowledge Based Intelligent Design System.
#@Quangang Yang,Carl Allen Reidsema
#t2007
#cCybernetics and Systems
#index783225
#%744668
#%747727
#%846232
#%875495
#!
  
#*Cybernetic Model (lopi) Simulation of Demographic Dynamics of Croatian Population.
#@Nikica Vilicic,Vladimir Ivkovic,Tomislav Janovic,Veljko Jovanovic
#t2007
#cCybernetics and Systems
#index783226
#% 
#!
  
#*Editorial: Knowledge Management and Ontologies - Part II.
#@Edward Szczerbicki
#t2007
#cCybernetics and Systems
#index783227
#% 
#!
  
#*A Simple Time Variant Method for Fuzzy Time Series Forecasting.
#@Shiva Raj Singh
#t2007
#cCybernetics and Systems
#index783228
#%1080676
#!
  
#*Multiscale Agent-based Simulation for Chondrogenic Pattern Formation .
#@Scott Christley,Xuelian Zhu,Stuart A. Newman,Mark S. Alber
#t2007
#cCybernetics and Systems
#index783229
#% 
#!
  
#*Design of Decision Tree via Kernelized Hierarchical Clustering for Multiclass Support Vector Machines.
#@Zhao Lu,Feng Lin,Hao Ying
#t2007
#cCybernetics and Systems
#index783230
#%985077
#%1022613
#%1023406
#!
  
#*Guaranteed Cost Control for a Class of Uncertain Switched Delay Systems: an Average Dwell-time Method.
#@Rui Wang,Jun Zhao
#t2007
#cCybernetics and Systems
#index783231
#% 
#!
  
#*Situated Cellular Agents Approach to Crowd Modeling and Simulation.
#@Stefania Bandini,Mizar Luca Federici,Giuseppe Vizzari
#t2007
#cCybernetics and Systems
#index783232
#%23891
#%55344
#%55515
#%56126
#%56832
#%670780
#%881353
#%1120804
#%1124400
#!
  
#*Using Correspondence Analysis When the System Description Yields several Transition Matrices. Examples with Simulated Data and Real Driver-car-environment System Data.
#@Pierre Loslever,Jean-Christophe Popieul,Philippe Simon
#t2007
#cCybernetics and Systems
#index783233
#% 
#!
  
#*Editorial: Knowledge Management and Ontologies - Part I.
#@Edward Szczerbicki
#t2007
#cCybernetics and Systems
#index783234
#% 
#!
  
#*Optimal Feeder Reconfiguration for Loss Reduction by Robust Searching Hybrid Differential Evolution.
#@Chung-Fu Chang,Ji-Pyng Chiou
#t2007
#cCybernetics and Systems
#index783235
#% 
#!
  
#*Supporting the Cad Structural Design Process with Knowledge-based Tools.
#@Carlos Toro,Jorge Posada,Joaquín Oyarzun,Juanjo Falcón
#t2007
#cCybernetics and Systems
#index783236
#%606119
#%912413
#%940802
#!
  
#*Complementarity of the Living Systems and the Dialectical Systems Theories: the Case of Public Medical Care in Slovenia.
#@Tatjana Mlakar,Matjaz Mulej
#t2007
#cCybernetics and Systems
#index783237
#% 
#!
  
#*Modeling and Simulation for Intelligent Control of Expansion Valve in Vapour Compression Refrigeration System.
#@Jagdev Singh,Nirmal Singh,J. K. Sharma
#t2007
#cCybernetics and Systems
#index783238
#%3354276
#!
  
#*Knowledge Representation for Leadership Stories.
#@Ronald L. Hartung,Anne Håkansson
#t2007
#cCybernetics and Systems
#index783239
#% 
#!
  
#*Semi-automated Annotation and Retrieval of Dance Media Objects.
#@Balakrishnan Ramadoss,Kannan Rajkumar
#t2007
#cCybernetics and Systems
#index783240
#%8663
#%22024
#%96136
#%108046
#%256411
#%500365
#%502049
#%502823
#%504651
#%1016657
#%1016792
#%1016887
#!
  
#*Multimodel Discrete Control with Online Updating of the Fractional Order Hold Gains.
#@A. Bilbao-Guillerna,Manuel de la Sen,Santiago Alonso-Quesada
#t2007
#cCybernetics and Systems
#index783241
#% 
#!
  
#*A Method for Ontology Conflict Resolution and Integration on Relation Level.
#@Ngoc Thanh Nguyen
#t2007
#cCybernetics and Systems
#index783242
#%361308
#%472193
#%912160
#%912234
#%941396
#!
  
#*Immunity as a Design Decision Making Paradigm for Complex Systems: a Robustness Approach.
#@Mahmoud Efatmaneshnik,Carl Allen Reidsema
#t2007
#cCybernetics and Systems
#index783243
#% 
#!
  
#*An Accelerated Algorithm for Density Estimation in Large Databases Using Gaussian Mixtures.
#@Alvaro Soto,Felipe Zavala,Anita Araneda
#t2007
#cCybernetics and Systems
#index783244
#%335443
#%335628
#%516580
#%600021
#%632609
#%769984
#!
  
#*Optimal Adaptive Controller for Multidimensional Armax Model.
#@Rui Jiang,Kueiming Lo
#t2007
#cCybernetics and Systems
#index783245
#% 
#!
  
#*Guest Editorial: Best of "agent-based Modeling and Simulation" (abmodsim).
#@Stefania Bandini,Giuseppe Vizzari,Paolo Petta
#t2007
#cCybernetics and Systems
#index783246
#% 
#!
  
#*Genetic Algorithms for Decisional Dna: Solving Sets of Experience Knowledge Structure.
#@Cesar Sanín,Edward Szczerbicki
#t2007
#cCybernetics and Systems
#index783247
#%140
#%310867
#%783222
#%860823
#%860990
#%310607
#!
  
#*Attractors, Structural Functions, and the Water Cycle.
#@Pasqual Francesc Esteve-Calvo,Miguel Lloret-Clement
#t2007
#cCybernetics and Systems
#index783248
#% 
#!
  
#*Brain Gene Ontology and Simulation System (bgos) for a Better Understanding of the Brain.
#@Nikola Kasabov,Vishal Jain,Paulo C. M. Gottgtroy,Lubica Benuskova,Frances Joseph
#t2007
#cCybernetics and Systems
#index783249
#%252108
#!
  
#*Towards the Construction of Decisional Dna: a Set of Experience Knowledge Structure Java Class within an Ontology System.
#@Cesar Sanín,Edward Szczerbicki
#t2007
#cCybernetics and Systems
#index783250
#%912413
#!
  
#*Using Reengineering for Knowledge-based Systems.
#@Anne Håkansson,Ronald L. Hartung
#t2007
#cCybernetics and Systems
#index783251
#%753371
#%875291
#%979746
#%995658
#%1070538
#%1073729
#%3004785
#!
  
#*Automatic Machine Learning of Keyphrase Extraction from Short Html Documents Written in Hebrew.
#@Yaakov HaCohen-Kerner,Ittay Stern,David Korkus,Erick Fredj
#t2007
#cCybernetics and Systems
#index783252
#%2360
#%935397
#%937551
#%956342
#%1009356
#!
  
#*A Sociological Perspective on the Reordering Problem in Multipath Routing.
#@Maysam Yabandeh,Amir Nayyeri,Nasser Yazdani,Caro Lucas
#t2007
#cCybernetics and Systems
#index783253
#%1122065
#!
  
#*New Model Based on Cellular Automata and Multiagent Techniques.
#@Daisuke Yamaguchi,Yasser Hassan,Eiichiro Tazaki
#t2007
#cCybernetics and Systems
#index783254
#%751167
#!
  
#*Lumpy Investment and Endogenous Business Cycles in an Evolutionary Multi-agent Model.
#@Giovanni Dosi,Giorgio Fagiolo,Andrea Roventini
#t2007
#cCybernetics and Systems
#index783255
#% 
#!
  
#*Empirical Research of the Principal Component Analysis and Ordered Weighted Averaging Integrated Evaluation Model on Software Projects.
#@Duen-Yian Yeh,Ching-Hsue Cheng,Hwei-Wun Yio
#t2007
#cCybernetics and Systems
#index783256
#%805809
#%879671
#%880482
#%997023
#%997476
#%2998221
#%3006807
#!
  
#*Neural Networks and Optimization Algorithms Applied for Construction of Low Noise Tread Profiles.
#@Matthias Becker,Helena Szczerbicka,Michael Thomas
#t2007
#cCybernetics and Systems
#index783257
#%1060384
#!
  
#*Adaptive and Intelligent Request Distribution for Content Delivery Networks.
#@Leszek Borzemski,Krzysztof Zatwarnicki,Anna Zatwarnicka
#t2007
#cCybernetics and Systems
#index783258
#%53804
#%673880
#%832340
#%833098
#%928576
#%929180
#%1063905
#%1080676
#%1081320
#!
  
#*A Generic Model of Collectivities.
#@Nigel Gilbert
#t2007
#cCybernetics and Systems
#index783259
#%593852
#%2887089
#!
  
#*Knowledge Management: an Integrative View and Empirical Examination.
#@Joanna Paliszkiewicz
#t2007
#cCybernetics and Systems
#index783260
#%2999048
#%2999041
#%2998975
#!
  
#*Robustness and Dynamic Interaction.
#@Alexander Weinmann
#t2007
#cCybernetics and Systems
#index783261
#% 
#!
  
#*Project Team Selection Using Fuzzy Optimization Approach.
#@Adil Baykasoglu,Türkay Dereli,Sena Das
#t2007
#cCybernetics and Systems
#index783262
#%812183
#%813423
#!
  
#*Simulating Knowledge-generation and Distribution Processes in Innovation Collaborations and Networks.
#@Andreas Pyka,Nigel Gilbert,Petra Ahrweiler
#t2007
#cCybernetics and Systems
#index783263
#% 
#!
  
#*Modeling and Control of Internal Combustion Engines Using Intelligent Techniques.
#@Shaun H. Lee,Robert J. Howlett,Simon D. Walters,Cyril Crua
#t2007
#cCybernetics and Systems
#index783264
#%981918
#!
  
#*Computational Embodiment: Constructing Autonomous Software Systems.
#@Christopher Landauer,Kirstie L. Bellman
#t1999
#cCybernetics and Systems
#index783265
#% 
#!
  
#*The Austrian Research Institute for Artificial Intelligence: a Short Presentation.
#@Robert Trappl
#t1999
#cCybernetics and Systems
#index783266
#% 
#!
  
#*A Note on the Maximum Missed-opportunity Cost Incurred by Minimizing Expected Losses in Genetic Algorithms.
#@David B. Fogel
#t1999
#cCybernetics and Systems
#index783267
#% 
#!
  
#*Coincidences Are not Accidental: a Theorem.
#@Vladik Kreinovich
#t1999
#cCybernetics and Systems
#index783268
#% 
#!
  
#*Fuzzy Logic Operators in Decision-making.
#@Vania Peneva,Ivan Popchev
#t1999
#cCybernetics and Systems
#index783269
#% 
#!
  
#*Cellular Meiosis: a System-linkage Theoretic Approach.
#@Miguel Lloret-Climent
#t1999
#cCybernetics and Systems
#index783270
#% 
#!
  
#*Dyadic Time, Dyadic Systems, and Evolution Operators.
#@Y. Endow
#t1999
#cCybernetics and Systems
#index783271
#% 
#!
  
#*Fuzzy Sliding Mode Controller Design: Indirect Adaptive Approach.
#@Jen-Yang Chen
#t1999
#cCybernetics and Systems
#index783272
#% 
#!
  
#*The Cybernetic Insights of Jean Piaget.
#@Ernst Von Glasersfeld
#t1999
#cCybernetics and Systems
#index783273
#% 
#!
  
#*Ila-2: an Inductive Learning Algorithm for Knowledge Discovery.
#@Mehmet R. Tolun,Hayri Sever,Mahmut Uludag,Saleh M. Abu-Soud
#t1999
#cCybernetics and Systems
#index783274
#% 
#!
  
#*A Generic Spatial Temporal Computation Model for Systemic Multimedia Presentations.
#@Nikitas A. Assimakopoulos
#t1999
#cCybernetics and Systems
#index783275
#% 
#!
  
#*A Genetic Navigation Algorithm for Autonomous Mobile Robots.
#@Andreas C. Nearchou
#t1999
#cCybernetics and Systems
#index783276
#% 
#!
  
#*Towards a Unified Messaging Environment over the Internet.
#@Leonard Chong,Siu Cheung Hui,Chai Kiat Yeo
#t1999
#cCybernetics and Systems
#index783277
#% 
#!
  
#*"cyberethics": a Panel Discussion.
#@Stuart A. Umpleby
#t1999
#cCybernetics and Systems
#index783278
#% 
#!
  
#*The Origins and Purposes of several Traditions in Systems Theory and Cybernetics.
#@Stuart A. Umpleby,Eric B. Dent
#t1999
#cCybernetics and Systems
#index783279
#% 
#!
  
#*Autonomous Agents in User Interfaces.
#@Mario Veitl,Paolo Petta,Robert Spour,Klaus Obermaier
#t1999
#cCybernetics and Systems
#index783280
#% 
#!
  
#*Systems Approach to the Concept of Mutation.
#@Miguel Lloret-Climent
#t1999
#cCybernetics and Systems
#index783281
#% 
#!
  
#*Factor Selections for a System Development Process.
#@Hsiao-Fan Wang,Long-Shuh Lin
#t1999
#cCybernetics and Systems
#index783282
#% 
#!
  
#*An Analysis of Experience Replay in Temporal Difference Learning.
#@Pawel Cichosz
#t1999
#cCybernetics and Systems
#index783283
#% 
#!
  
#*The Process Equation: Formulating and Testing the Process Theory of Systems.
#@Hector Sabelli,Louis H. Kauffman
#t1999
#cCybernetics and Systems
#index783284
#% 
#!
  
#*What Is a Number?
#@Louis H. Kauffman
#t1999
#cCybernetics and Systems
#index783285
#% 
#!
  
#*On the Theory and Psychology of Knowing and Learning and its Application to Qualitative Evaluation.
#@Doreen E. Steg
#t1999
#cCybernetics and Systems
#index783286
#% 
#!
  
#*The Stories of Ethics: Ethical Comportment and the Stories We Tell.
#@Philip Lewin
#t1999
#cCybernetics and Systems
#index783287
#% 
#!
  
#*Information and Self-organization Revisited via Complex-valued Fractional Brownian Motion of Order N.
#@Guy Jumarie
#t1999
#cCybernetics and Systems
#index783288
#% 
#!
  
#*Design of a Therapeutic Specialist for Acute Myocardial Infarct.
#@Manuel Lama,Maria Taboada,Senén Barro,Roque Marín,Francisco Palacios
#t1999
#cCybernetics and Systems
#index783289
#% 
#!
  
#*Robust Output Tracking Control for Nonlinear Interconnected Systems with Similar Structure.
#@Chen Bing
#t1999
#cCybernetics and Systems
#index783290
#% 
#!
  
#*Category-functor Modelling of Natural Systems.
#@A. P. Levich,A. V. Solov'Yov
#t1999
#cCybernetics and Systems
#index783291
#% 
#!
  
#*Model Integration for Managerial Decision Support Using a Model Description Language with a Formal Semantics.
#@Naoki Shiba,Jun-ichi Iijima,Kaoru Ohta
#t1999
#cCybernetics and Systems
#index783292
#% 
#!
  
#*Towards a Logical Reconstruction of Information Retrieval Theory.
#@Fabrizio Sebastiani
#t1999
#cCybernetics and Systems
#index783293
#% 
#!
  
#*Robust Decentralized Hinfinity Control for Nonlinear Interconnected Systems with Uncertainty.
#@Chen Bing,Zhang Siying,Wei Yongde
#t1999
#cCybernetics and Systems
#index783294
#% 
#!
  
#*Evaluating the Rate of Aggregative Risk in Software Development Using Fuzzy Set Theory.
#@Shyi-Ming Chen
#t1999
#cCybernetics and Systems
#index783295
#% 
#!
  
#*Editorial: Special Issue: Papers from the 1997 Meeting of the American Society for Cybernetics (part Ii).
#@Stuart A. Umpleby,Mario Veitl
#t1999
#cCybernetics and Systems
#index783296
#% 
#!
  
#*Efficiency of Decomposition Method for Structured Multiobjective Linear Programming Problems with Fuzzy Numbers.
#@Masatoshi Sakawa,Kosuke Kato,Hideki Mohara
#t1999
#cCybernetics and Systems
#index783297
#% 
#!
  
#*An Improver of Chess Problems.
#@Yaakov HaCohen-Kerner,Nahum Cohen,Erez Shasha
#t1999
#cCybernetics and Systems
#index783298
#% 
#!
  
#*Challenging the Computational Metaphor: Implications for How We Think.
#@Lynn Andrea Stein
#t1999
#cCybernetics and Systems
#index783299
#% 
#!
  
#*A Text Theory of Ecological System.
#@Yolanda Villacampa-Esteve,M. A. Castro-Lopez,Josep Lluis Usó-Domènech,Patricia Sastre-Vázquez
#t1999
#cCybernetics and Systems
#index783300
#% 
#!
  
#*Editorial Special Issue, Papers from the 1997 Meeting of the American Society for Cybernetics (part I).
#@
#t1999
#cCybernetics and Systems
#index783301
#% 
#!
  
#*Statistical Linguistic Laws in Ecological Models.
#@Patricia Sastre-Vázquez,Josep Lluis Usó-Domènech,Jorge Mateu,Patricia Salvador,Yolanda Villacampa-Esteve
#t1999
#cCybernetics and Systems
#index783302
#% 
#!
  
#*A Formal Model of Organizational Argumentation: Applications of Informal Logic to a Committee Meeting.
#@John A. A. Sillince,Masoud Saeedi
#t1999
#cCybernetics and Systems
#index783303
#% 
#!
  
#*Membership Functions Shape and its Influence on the Dynamical Behaviour of Fuzzy Logic Controller.
#@Petia D. Koprinkova
#t2000
#cCybernetics and Systems
#index783304
#% 
#!
  
#*A Parameter-based Combined Classifier for Invariant Face Recognition.
#@Ahmad S. Tolba
#t2000
#cCybernetics and Systems
#index783305
#% 
#!
  
#*Application of Fuzzy Logic in Environmental Risk Assessment: some Thoughts on Fuzzy Sets.
#@Mory M. Ghomshei,John A. Meech
#t2000
#cCybernetics and Systems
#index783306
#% 
#!
  
#*Design of Supervisory Control Functions Based on Feedforward Neural Networks.
#@Dragan Kukolj
#t2000
#cCybernetics and Systems
#index783307
#% 
#!
  
#*Multituning Fuzzy Control Systems Design.
#@Ching-Chang Wong,Ding-An Chiang,Hsuan-Ming Feng
#t2000
#cCybernetics and Systems
#index783308
#% 
#!
  
#*"talk with the Experts": Learning Management Decision-making Using Cai.
#@Robert J. Mockler,Dorothy G. Dologite,Marc E. Gartenfeld
#t2000
#cCybernetics and Systems
#index783309
#% 
#!
  
#*Using Computational Intelligence in Fuzzy Engineering Design.
#@Hans-Jürgen Sebastian,Ralf Schleiffer
#t2000
#cCybernetics and Systems
#index783310
#% 
#!
  
#*Inductive Learning for Parameter Optimization.
#@Rainer Barton,Helena Szczerbicka
#t2000
#cCybernetics and Systems
#index783311
#% 
#!
  
#*Reinforcement Linearization Control System.
#@Kao-Shing Hwang,Horng-Jen Chao
#t2000
#cCybernetics and Systems
#index783312
#% 
#!
  
#*A Fuzzy Self-learning Position Control of Hydraulic Drive.
#@Edvard Deticek
#t2000
#cCybernetics and Systems
#index783313
#% 
#!
  
#*Position Control Employing Fuzzy-sliding Mode and Genetic Algorithms with a Modified Evolutionary Direction Operator.
#@Ching-Tzong Su,Guor-Rurng Lii,Hong-Rong Hwung
#t2000
#cCybernetics and Systems
#index783314
#% 
#!
  
#*Intelligold - an Expert System for Gold Plant Process Design.
#@Vanessa M. Torres,Arthur P. Chaves,John A. Meech
#t2000
#cCybernetics and Systems
#index783315
#% 
#!
  
#*Binary Control of Fermentation Processes.
#@Plamena Zlateva
#t2000
#cCybernetics and Systems
#index783316
#% 
#!
  
#*An Analysis of Neural Networks as Simulators and Emulators.
#@Guy M. Nicoletti
#t2000
#cCybernetics and Systems
#index783317
#% 
#!
  
#*The Inference Based on Molecular Computing.
#@Piotr Wasiewicz,Tomasz Janczak,Jan J. Mulawka,Andrzej Plucienniczak
#t2000
#cCybernetics and Systems
#index783318
#% 
#!
  
#*Procedures of Designing Enterprise Network Communication Subsystems.
#@Adam Grzech
#t2000
#cCybernetics and Systems
#index783319
#% 
#!
  
#*A New Method for Constructing Fuzzy Decision Trees and Generating Fuzzy Classification Rules from Training Examples.
#@Shyi-Ming Chen,Shih-Yirng Lin
#t2000
#cCybernetics and Systems
#index783320
#% 
#!
  
#*Knowledge Management in Creating Hybrid Systems for Environmental Protection.
#@Zdzislaw Gomolka,Cezary Orlowski
#t2000
#cCybernetics and Systems
#index783321
#% 
#!
  
#*Discover: an Intelligent Discovery Programming System.
#@Haider Ali Ramadhan
#t2000
#cCybernetics and Systems
#index783322
#% 
#!
  
#*Theory of Quantized Systems: Devs Simulation of Perceiving Agents.
#@Bernard P. Zeigler,Hessam S. Sarjoughian,Herbert Prähofer
#t2000
#cCybernetics and Systems
#index783323
#% 
#!
  
#*Robust H Control for Systems with Time-varying Parameter Uncertainty and Variance Constraints.
#@Zidong Wang,Heinz Unbehauen
#t2000
#cCybernetics and Systems
#index783324
#% 
#!
  
#*Computational Methods through Genetic Algorithms for Obtaining Stackelberg Solutions to Two-level Mixed Zero-one Programming Problems.
#@Ichiro Nishizaki,Masatoshi Sakawa
#t2000
#cCybernetics and Systems
#index783325
#% 
#!
  
#*Applying Data Mining Techniques for Cancer Classification on gene Expression Data.
#@Jinn-Yi Yeh
#t2008
#cCybernetics and Systems
#index783326
#%140
#%764727
#%764734
#%766031
#%938295
#%1009507
#%1113853
#%1150377
#!
  
#*Realizing Fine Quality Real-time Fuzzy Control by a Simple Algorithm.
#@Hu Jing-Song,Zheng Qilun,Penghong Pandan,Wu Jie
#t2000
#cCybernetics and Systems
#index783327
#% 
#!
  
#*Reactive Agent Design for Intelligent Tutoring Systems.
#@Ana Lilia Laureano-Cruces,Fernando De Arriaga
#t2000
#cCybernetics and Systems
#index783328
#% 
#!
  
#*Selection of Surgical Residents: a Neural Network Approach.
#@Ajay K. Aggarwal,Steven D. Travers,Carol E. H. Scott-Conner
#t2000
#cCybernetics and Systems
#index783329
#% 
#!
  
#*Pattern Modelling in Time-series Forecasting.
#@Sameer Singh
#t2000
#cCybernetics and Systems
#index783330
#% 
#!
  
#*A Connectionist Method to Solve Job Shop Problems.
#@Marko Fabiunke,Gerd Kock
#t2000
#cCybernetics and Systems
#index783331
#% 
#!
  
#*The Theory of Viable Joint Ventures.
#@Maurice Yolles
#t2000
#cCybernetics and Systems
#index783332
#% 
#!
  
#*Parametric Identification of Linear Noisy Input-output Systems.
#@Wei Xing Zheng
#t2000
#cCybernetics and Systems
#index783333
#% 
#!
  
#*Ai and Intelligent Industrial Applications: the Rough Set Perspective.
#@Zdzislaw Pawlak
#t2000
#cCybernetics and Systems
#index783334
#% 
#!
  
#*Properties of Analogue Neural Networks.
#@Shoichi Noguchi,Akio Tanaka,Kenji Sugawara
#t1980
#cCybernetics and Systems
#index783335
#% 
#!
  
#*Decentralized Robust Control Design for a Class of Similar Composite Systems with Uncertainties.
#@Zheng Wang,Zheng Cai,Zhong-Hai Li,Si-ying Zhang
#t2000
#cCybernetics and Systems
#index783336
#% 
#!
  
#*Editorial for Special Issue on Intelligent Methods for Performance Enhancement in Industrial Systems Volume Ii: Intelligent Systems Development - Tools and Methodologies.
#@Edward Szczerbicki
#t2000
#cCybernetics and Systems
#index783337
#% 
#!
  
#*Membership Functions Shape and its Influence on the Stability of Fuzzy Control Systems.
#@Petia D. Koprinkova
#t2000
#cCybernetics and Systems
#index783338
#% 
#!
  
#*Body Imitation in an Enculturated Orangutan ().
#@Josep Call
#t2001
#cCybernetics and Systems
#index783339
#% 
#!
  
#*Emotional Learning: a Computational Model of the Amygdala.
#@Christian Balkenius,Jan Morén
#t2001
#cCybernetics and Systems
#index783340
#% 
#!
  
#*Machinery for Artificial Emotions.
#@Luís Miguel Botelho,Helder Coelho
#t2001
#cCybernetics and Systems
#index783341
#% 
#!
  
#*Time's Arrow in Particle Physics.
#@Manfred Jeitler
#t2001
#cCybernetics and Systems
#index783342
#% 
#!
  
#*Grounding Emotions in Adaptive Systems: Volume Ii.
#@Paolo Petta,Lola Cañamero
#t2001
#cCybernetics and Systems
#index783343
#% 
#!
  
#*The Mechanisms of Imitation.
#@Kevin N. Laland,Patrick Bateson
#t2001
#cCybernetics and Systems
#index783344
#% 
#!
  
#*Shape Descriptors for Labeling Concavity Trees.
#@B. G. Batchelor
#t1980
#cCybernetics and Systems
#index783345
#% 
#!
  
#*Self-learning Agents: a Connectionist Theory of Emotion Based on Crossbar Value Judgment.
#@Stevo Bozinovski,Liljana Bozinovska
#t2001
#cCybernetics and Systems
#index783346
#% 
#!
  
#*Irreversibility in Models of Macroevolution.
#@Siegfried Fussy,Gerhard GrÖssing,Herbert Schwabl
#t2001
#cCybernetics and Systems
#index783347
#% 
#!
  
#*An Expertise Model for Therapy Planning Using Abductive Reasoning.
#@Samuel Túnez,Isabel María del Águila,Roque Marín
#t2001
#cCybernetics and Systems
#index783348
#% 
#!
  
#*Emotion-triggered Learning in Autonomous Robot Control.
#@Sandra Clara Gadanho,John Hallam
#t2001
#cCybernetics and Systems
#index783349
#% 
#!
  
#*Time Operator in Quantum Mechanics and some Stochastic Processes with Long Memory.
#@Maurice Courbage
#t2001
#cCybernetics and Systems
#index783350
#% 
#!
  
#*Open Quantum Systems and Complete Positivity.
#@Fabio Benatti,R. Floreanini,A. Lapel
#t2001
#cCybernetics and Systems
#index783351
#% 
#!
  
#*Nonlinear Controller Design Based on Optimal Matrix Assignment.
#@Alexander Weinmann
#t2001
#cCybernetics and Systems
#index783352
#% 
#!
  
#*Making Waves: the Paradigms of Developmental Biology and their Impact on Artificial Life and Embryonics.
#@R. Gordon
#t2001
#cCybernetics and Systems
#index783353
#% 
#!
  
#*Imitative versus Nonimitative Strategies in a Land-use Simulation.
#@J. Gareth Polhill,Nicholas Mark Gotts,Alistair N. R. Law
#t2001
#cCybernetics and Systems
#index783354
#% 
#!
  
#*Formal Validation and Verification of Atomic Resolution Microscope Control and Topography.
#@Joaquín Nicolás,José Ambrosio Toval Álvarez,Aurelio Arenas,Juan Alcalde
#t2001
#cCybernetics and Systems
#index783355
#% 
#!
  
#*From Toda's Urge Theory to the Commitment Theory of Emotions.
#@Michel Aubé
#t2001
#cCybernetics and Systems
#index783356
#% 
#!
  
#*Grounding Emotions in Adaptive Systems: Volume I.
#@Lola Cañamero,Paolo Petta
#t2001
#cCybernetics and Systems
#index783357
#% 
#!
  
#*The Cognitive Ratchet - the Ratchet Effect as a Fundamental Principle in Evolution and Cognition.
#@Alexander Riegler
#t2001
#cCybernetics and Systems
#index783358
#% 
#!
  
#*The Grounding Problem of Modeling Emotions in Adaptive Artifacts.
#@Thomas Wehrle
#t2001
#cCybernetics and Systems
#index783359
#% 
#!
  
#*Nonlocality and the Time-ordering of Events.
#@Gerhard Grössing
#t2001
#cCybernetics and Systems
#index783360
#% 
#!
  
#*Emotions and Adaptation in Autonomous Agents: a Design Perspective.
#@Lola Cañamero
#t2001
#cCybernetics and Systems
#index783361
#% 
#!
  
#*Imitation in Natural and Artificial Systems.
#@Chrystopher L. Nehaniv,Kerstin Dautenhahn
#t2001
#cCybernetics and Systems
#index783362
#% 
#!
  
#*The Evolution of Perception.
#@C. Cristofre Martin,Richard Gordon
#t2001
#cCybernetics and Systems
#index783363
#% 
#!
  
#*Imitation in Animals: Evidence, Function, and Mechanisms.
#@Thomas R. Zentall
#t2001
#cCybernetics and Systems
#index783364
#% 
#!
  
#*Developing Agile Manufacturing Strategy with Awesim Simulation Platform.
#@Edward Szczerbicki,J. Williams
#t2001
#cCybernetics and Systems
#index783365
#% 
#!
  
#*Evolution and Memes: the Human Brain as a Selective Imitation Device.
#@Susan Blackmore
#t2001
#cCybernetics and Systems
#index783366
#% 
#!
  
#*A Model of Imitation Learning of Algorithms from Worked Examples.
#@Edmund Furse
#t2001
#cCybernetics and Systems
#index783367
#% 
#!
  
#*Aggregation of Fuzzy Numbers in a Decision-making Situation.
#@Vania Peneva,Ivan Popchev
#t2001
#cCybernetics and Systems
#index783368
#% 
#!
  
#*Internet Based Design System for Globally Distributed Concurrent Engineering.
#@Harvey Jiang,John Mo
#t2001
#cCybernetics and Systems
#index783369
#% 
#!
  
#*A Blackboard Database Model of the Design Planning Process in Concurrent Engineering.
#@C. Reidsema,Edward Szczerbicki
#t2001
#cCybernetics and Systems
#index783370
#% 
#!
  
#*An Architecture of Emotion-based Behavior Selection for Mobile Robots.
#@Tadashi Kitamura,Kuniko Ono
#t2001
#cCybernetics and Systems
#index783371
#% 
#!
  
#*Unavoidable Quantum Losses in Zeno-like Neutron Experiments.
#@Helmut Rauch
#t2001
#cCybernetics and Systems
#index783372
#% 
#!
  
#*Like Me?- Measures of Correspondence and Imitation.
#@Chrystopher L. Nehaniv,Kerstin Dautenhahn
#t2001
#cCybernetics and Systems
#index783373
#% 
#!
  
#*Urging Desire: Motivational Mechanisms for Intelligent Agents with Minds of their Own.
#@Penny Baillie de Byl,Dickson Lukose
#t2001
#cCybernetics and Systems
#index783374
#% 
#!
  
#*Learning Motor Skills by Imitation: a Biologically Inspired Robotic Model.
#@Aude Billard
#t2001
#cCybernetics and Systems
#index783375
#% 
#!
  
#*Vibration Control of a Class of Generalized Gradient Systems.
#@L. Luyckx,M. Loccufier,E. Noldus
#t2001
#cCybernetics and Systems
#index783376
#% 
#!
  
#*The Role of Hierarchy Levels in Vocal Imitations of Songbirds.
#@Dietmar Todt,Jasmin Cirillo,Nicole Geberzahn,Friederike Schleuss
#t2001
#cCybernetics and Systems
#index783377
#% 
#!
  
#*Research Issues in E-commerce and Product Development.
#@Peter O'Grady,Wen-Chieh Chuang
#t2001
#cCybernetics and Systems
#index783378
#% 
#!
  
#*Intelligent Enterprise Management.
#@Edward Szczerbicki
#t2001
#cCybernetics and Systems
#index783379
#% 
#!
  
#*Sequential Partition Detectors with Dependent Sampling.
#@Roger F. Dwyer,Ludwik Kurz
#t1980
#cCybernetics and Systems
#index783380
#% 
#!
  
#*Integrated Communication and Control Systems with Occasional Information Feedback.
#@Ge Guo
#t2008
#cCybernetics and Systems
#index783381
#% 
#!
  
#*Editorial Special Issue on Intelligent Methods for Performance Enhancement in Industrial Systems Volume I: Soft Modelling and Simulation Tools for Decision Support.
#@
#t2000
#cCybernetics and Systems
#index783382
#% 
#!
  
#*Applications of Fuzzy Set Theory to Image Sciences.
#@Edward T. Lee
#t1980
#cCybernetics and Systems
#index783383
#% 
#!
  
#*A Cybernetic Model of the Mbo Process.
#@John C. Aplin Jr.,Peter P. Schoderbek
#t1980
#cCybernetics and Systems
#index783384
#% 
#!
  
#*An Enhanced Deterministic Fuzzy Time Series Forecasting Model.
#@Sheng-Tun Li,Yi-Chung Cheng
#t2009
#cCybernetics and Systems
#index783385
#%872877
#%893176
#%910957
#%2990726
#%3098671
#!
  
#*Preface.
#@G. Gössing
#t2001
#cCybernetics and Systems
#index783386
#% 
#!
  
#*Variable Structure Control of Two Manipulators Handling a Constrained Object.
#@Mohamed Zribi,Loulin Huang,Sai Piu Chan
#t1997
#cCybernetics and Systems
#index783387
#% 
#!
  
#*A System of Problems and How to Deal with It.
#@Christer Carlsson
#t1980
#cCybernetics and Systems
#index783388
#% 
#!
  
#*Hierarchical Shape Description Based upon Convex Hulls of Concavities.
#@B. G. Batchelor
#t1980
#cCybernetics and Systems
#index783389
#% 
#!
  
#*Uncertainty and Complementarity Principles in Ecological Models.
#@Josep Lluis Usó-Domènech,Yolanda Villacampa-Esteve,Jorge Mateu-Mahiques,Patricia Sastre-Vázquez
#t2000
#cCybernetics and Systems
#index783390
#% 
#!
  
#*Uncolorable Trivalent Graphs.
#@George Spencer-Brown
#t1998
#cCybernetics and Systems
#index783391
#% 
#!
  
#*Learning Design Knowledge as Generalization.
#@Heng Li,Xindong Wu
#t1998
#cCybernetics and Systems
#index783392
#% 
#!
  
#*A Clustering and Genetic Scheme for Large Tsp Optimization Problems.
#@Chien-Ying Lu,José G. Delgado-Frias,Wei Lin
#t1998
#cCybernetics and Systems
#index783393
#% 
#!
  
#*The Process Equation.
#@Louis H. Kauffman,Hector Sabelli
#t1998
#cCybernetics and Systems
#index783394
#% 
#!
  
#*Concept of Visual Interfaces to Coordinate Real-time Decision Making in Hierarchical Structures.
#@Takashi Koiso,Shogo Nishida
#t1998
#cCybernetics and Systems
#index783395
#% 
#!
  
#*Changing Paradigms in Operational Research.
#@Maurice Yolles
#t1998
#cCybernetics and Systems
#index783396
#% 
#!
  
#*Modeling Economic Learning as Modeling.
#@Scott Moss,Bruce Edmonds
#t1998
#cCybernetics and Systems
#index783397
#% 
#!
  
#*Coping with Cyberspace.
#@G. J. Marshall
#t1998
#cCybernetics and Systems
#index783398
#% 
#!
  
#*Management of Quality of Service with Software Agents.
#@Hermann de Meer,Antonio Puliafito,Orazio Tomarchio
#t1998
#cCybernetics and Systems
#index783399
#% 
#!
  
#*Concept Representation with Overlapping Feature Intervals.
#@H. Altay Güvenir,Hakime G. Koc
#t1998
#cCybernetics and Systems
#index783400
#% 
#!
  
#*Multiple Interacting Programs: a Representation for Evolving Complex Behavior.
#@Peter J. Angeline
#t1998
#cCybernetics and Systems
#index783401
#% 
#!
  
#*A Self-organizing Model for Scheduling Distributed Autonomous Manufacturing Systems.
#@Ambalavanar Tharumarajah
#t1998
#cCybernetics and Systems
#index783402
#% 
#!
  
#*Efficient Derivation of the Optimal Assembly Sequence from Product Description.
#@Samo Zorc,D. Noe,Igor Kononenko
#t1998
#cCybernetics and Systems
#index783403
#% 
#!
  
#*Fuzzy Ordering on the Basis of Multicriteria Aggregation.
#@Vania Peneva,Ivan Popchev
#t1998
#cCybernetics and Systems
#index783404
#% 
#!
  
#*On Generating Fuzzy Rules by an Evolutionary Approach.
#@Danuta Rutkowska
#t1998
#cCybernetics and Systems
#index783405
#% 
#!
  
#*Obituary: Silvio Ceccato (1914-1997).
#@Ernst von Glasersfeld
#t1998
#cCybernetics and Systems
#index783406
#% 
#!
  
#*Genetic Algorithms: a Tool for Modelling, Simulation, and Optimization of Complex Systems.
#@Helena Szczerbicka,Matthias Becker,Michael Syrjakow
#t1998
#cCybernetics and Systems
#index783407
#% 
#!
  
#*Implementation of Intelligent Controllers on Digital Signal Processors.
#@Inés del Campo,Javier Echanobe,José Manuel Tarela
#t1998
#cCybernetics and Systems
#index783408
#% 
#!
  
#*Constructivism and Phenomenology What Do They Have in Common, and How Can They Be Told Apart?
#@Jens Rasmussen
#t1998
#cCybernetics and Systems
#index783409
#% 
#!
  
#*System Modeling and Simulation for Predictive Maintenance.
#@Edward Szczerbicki,Warren White
#t1998
#cCybernetics and Systems
#index783410
#% 
#!
  
#*Identification of an Open System by its Resources.
#@Stefan Z. Stefanov
#t1998
#cCybernetics and Systems
#index783411
#% 
#!
  
#*Rough Set Theory and its Applications to Data Analysis.
#@Zdzislaw Pawlak
#t1998
#cCybernetics and Systems
#index783412
#% 
#!
  
#*Unified Simulation Model of Medical Laboratory Organization.
#@Mario Veitl,Oswald Wagner,Christian R. Schweiger
#t1998
#cCybernetics and Systems
#index783413
#% 
#!
  
#*Fuzzy Logic Application in Ergonomic Renewal of Multiagent Manufacturing Systems.
#@Leszek M. Pacholski
#t1998
#cCybernetics and Systems
#index783414
#% 
#!
  
#*Information Filtering of on-line News Using Dynamic Abstract Generation.
#@Siu Cheung Hui,Angela Goh
#t1998
#cCybernetics and Systems
#index783415
#% 
#!
  
#*Adaptive Control for Nonlinear Systems Using Decomposed Neural Network.
#@Jin Wang
#t1998
#cCybernetics and Systems
#index783416
#% 
#!
  
#*What It Means to Be "situated".
#@Lewis A. Loren,Eric Dietrich,Clayton T. Morrison,Jonathan Beskin
#t1998
#cCybernetics and Systems
#index783417
#% 
#!
  
#*School Scheduling Using Threshold Accepting.
#@Nicolas Abboud,Masatoshi Sakawa,Masahiro Inuiguchi
#t1998
#cCybernetics and Systems
#index783418
#% 
#!
  
#*Blackboard Approach in Design Planning for Concurrent Engineering Environment.
#@C. Reidsema,Edward Szczerbicki
#t1998
#cCybernetics and Systems
#index783419
#% 
#!
  
#*Editorial for Special Issue on Intelligent Modelling and Simulation for Complex Systems, Volume Ii: Intelligent Modelling Tools.
#@Edward Szczerbicki
#t1998
#cCybernetics and Systems
#index783420
#% 
#!
  
#*Flexible Neuro-fuzzy Simulation Based on Abstract Model and Interface Definitions.
#@Gerd Kock,Thomas Becher
#t1998
#cCybernetics and Systems
#index783421
#% 
#!
  
#*Editorial.
#@Edward Szczerbicki
#t1998
#cCybernetics and Systems
#index783422
#% 
#!
  
#*Design of Consistent Enterprise Models.
#@J. Raczkowsky,W. Reithofer
#t1998
#cCybernetics and Systems
#index783423
#% 
#!
  
#*A Cell Decomposition-based Collision Avoidance Algorithm for Robot Manipulators.
#@Mark A. C. Gill,Albert Y. Zomaya
#t1998
#cCybernetics and Systems
#index783424
#% 
#!
  
#*Two-stage Identification and its Application to Robust Lqg Controller Design.
#@Z. Zang,K. L. Teo
#t1998
#cCybernetics and Systems
#index783425
#% 
#!
  
#*Coevolutionary Genetic Algorithms for Nonconvex Nonlinear Programming Problems: Revised Genocop Iii.
#@Masatoshi Sakawa,Katsuhiro Yauchi
#t1998
#cCybernetics and Systems
#index783426
#% 
#!
  
#*Compression and Expansion of Fuzzy Rule Bases by Using Crisp-fuzzy Neural Networks.
#@Yan-Qing Zhang,Abraham Kandel
#t1998
#cCybernetics and Systems
#index783427
#% 
#!
  
#*The Use of Conventional and Minplus Algebra for the Modeling of Hybrid Petri Nets.
#@Jan Komenda,Abdellah El Moudni,Nourredine Zerhouni
#t1998
#cCybernetics and Systems
#index783428
#% 
#!
  
#*Neural Network Modeling of Fermentation Processes: Specific Kinetic Rate Models.
#@Petia D. Koprinkova,Marieta N. Petrova,Trayana D. Patarinska,M. Bliznakova
#t1998
#cCybernetics and Systems
#index783429
#% 
#!
  
#*Nonmonotonic Temporal Reasoning: a Logic-based Approach to Declarative Modeling.
#@C. K. MacNish
#t1998
#cCybernetics and Systems
#index783430
#% 
#!
  
#*Aggregating Fuzzy Opinions in the Group Decision-making Environment.
#@Shyi-Ming Chen
#t1998
#cCybernetics and Systems
#index783431
#% 
#!
  
#*Optimizing Complex Functions by Chaos Search.
#@Bing Li,Wei-Sun Jiang
#t1998
#cCybernetics and Systems
#index783432
#% 
#!
  
#*On the Path Planning Problem in the Vicinity of Obstacles.
#@Albert Y. Zomaya,Matt R. Wright,Tarek M. Nabhan
#t1998
#cCybernetics and Systems
#index783433
#% 
#!
  
#*Myocybernetics-a New Development in Neuromuscular Control.
#@H. Hatze
#t1980
#cCybernetics and Systems
#index783434
#% 
#!
  
#*Co-states, Constraints, and Diagrammatic Reasoning.
#@Z. Chen
#t1998
#cCybernetics and Systems
#index783435
#% 
#!
  
#*A Knowledge-based Method for Fuzzy Query Processing for Document Retrieval.
#@Shyi-Ming Chen
#t1997
#cCybernetics and Systems
#index783436
#% 
#!
  
#*On the Calculation of the Transfer Function of Timed Event Petri Nets.
#@Jan Komenda,Abdellah El Moudni,Nourredine Zerhouni,Michel Ferney
#t1997
#cCybernetics and Systems
#index783437
#% 
#!
  
#*Hi & Low-in & Out: Approaches to Social Status.
#@Manfred E. A. Schmutzer,Wyllis Bandler
#t1980
#cCybernetics and Systems
#index783438
#% 
#!
  
#*System-linkage: Structural Functions and Hierarchies.
#@Miguel Lloret-Climent,Yolanda Villacampa-Esteve,Josep Lluis Usó-Domènech
#t1998
#cCybernetics and Systems
#index783439
#% 
#!
  
#*Autonomous Agents as Embodied Ai.
#@Stan Franklin
#t1997
#cCybernetics and Systems
#index783440
#% 
#!
  
#*An Interactive Fuzzy Satisficing Method for Multiobjective Linear Fractional Programs with Block Angular Structure.
#@Kosuke Kato,Masatoshi Sakawa
#t1997
#cCybernetics and Systems
#index783441
#% 
#!
  
#*Determination of Optimal Bidding Profit Rate by Fuzzy Set Theory.
#@Zivojin Prascevic,Sonja Petrovic-Lazarevic
#t1997
#cCybernetics and Systems
#index783442
#% 
#!
  
#*Postmodular Systems: Architectural Principles for Cognitive Robotics.
#@Lynn Andrea Stein
#t1997
#cCybernetics and Systems
#index783443
#% 
#!
  
#*Contributions to Data Envelopment Analysis.
#@Jati K. Sengupta
#t1997
#cCybernetics and Systems
#index783444
#% 
#!
  
#*Epistemological Aspects of Embodied Artificial Intelligence.
#@Erich Prem
#t1997
#cCybernetics and Systems
#index783445
#% 
#!
  
#*Application of Wavelet Transform to Compression of Mechanical Vibration Data.
#@Makoto Tanaka,Masatoshi Sakawa,Kosuke Kato,Michiharu Abe
#t1997
#cCybernetics and Systems
#index783446
#% 
#!
  
#*Responsiveness in Dialog and Priorities for Language Research.
#@Nigel Ward
#t1997
#cCybernetics and Systems
#index783447
#% 
#!
  
#*Some Unsolved Problems in General Systems Theory (i).
#@Yi Lin,Qingping Hu,Dan Li
#t1997
#cCybernetics and Systems
#index783448
#% 
#!
  
#*Simple Asymptotic Stabilizing Control Laws for Linear Time-invariant Hybrid Systems.
#@M. De La Sen
#t1997
#cCybernetics and Systems
#index783449
#% 
#!
  
#*I Could Be You: the Phenomenological Dimension of Social Understanding.
#@Kerstin Dautenhahn
#t1997
#cCybernetics and Systems
#index783450
#% 
#!
  
#*Some Unsolved Problems in General Systems Theory (ii).
#@Yi Lin,Qingping Hu,Dan Li
#t1997
#cCybernetics and Systems
#index783451
#% 
#!
  
#*Hierarchy: a Method for Analysis and Synthesis of Hierarchies and Networks.
#@Magdalena Kalaidjieva
#t1997
#cCybernetics and Systems
#index783452
#% 
#!
  
#*Application of Fuzzy Set Theory to Electric Car Control.
#@Laurent Vermeiren,Thierry-Marie Guerra,G. Paganelli
#t1997
#cCybernetics and Systems
#index783453
#% 
#!
  
#*Knowledge-based Academic Advising Systems: Survey, Evaluation, and Recommendations.
#@A. Bykat
#t1997
#cCybernetics and Systems
#index783454
#% 
#!
  
#*Combining Creativity and Expertise.
#@Zhengxin Chen
#t1997
#cCybernetics and Systems
#index783455
#% 
#!
  
#*For Nonlinearity in the Heartbeat Time Series.
#@Angelo Di Garbo,Michele Barbi,Santi Chillemi,Rita Balocchi,Claudio Michelassi,Clara Carpeggiani
#t1997
#cCybernetics and Systems
#index783456
#% 
#!
  
#*Mental Imagery as a Design Tool.
#@Uday A. Athavankar
#t1997
#cCybernetics and Systems
#index783457
#% 
#!
  
#*Input/output Linearization for Nonlinear Systems with Uncertainties and Disturbances Using Tdc.
#@Wen Chen,Huaguang Zhang,Chaowan Yin
#t1997
#cCybernetics and Systems
#index783458
#% 
#!
  
#*Studying the Role of Embodiment in Cognition.
#@Maja J. Mataric
#t1997
#cCybernetics and Systems
#index783459
#% 
#!
  
#*Maximum Entropy Principle in Fields of Probabilities. Application to Self-organizing Systems.
#@Guy Jumarie
#t1997
#cCybernetics and Systems
#index783460
#% 
#!
  
#*Generating Fuzzy Rules from Relational Database Systems for Estimating Null Values.
#@Shyi-Ming Chen,Ming-Shiow Yeh
#t1997
#cCybernetics and Systems
#index783461
#% 
#!
  
#*Fuzzy Direct Adaptive Control for a Class of Decentralized Nonlinear Systems.
#@Shaocheng Tong,Tianyou Chai,Qingguo Li
#t1997
#cCybernetics and Systems
#index783462
#% 
#!
  
#*Using the Data Base as a Semantic Component to Aid in the Parsing of Natural Language Data Base Queries.
#@Larry R. Harris
#t1980
#cCybernetics and Systems
#index783463
#% 
#!
  
#*Letter from the Editor.
#@Robert Trappl
#t1997
#cCybernetics and Systems
#index783464
#% 
#!
  
#*Wavelets in High-resolution Radar Imaging and Clinical Magnetic Resonance Tomography.
#@Walter Schempp
#t1997
#cCybernetics and Systems
#index783465
#% 
#!
  
#*Priorities as a Basis for Control in Nonsequential Systems.
#@Friedrich Gebhardt
#t1997
#cCybernetics and Systems
#index783466
#% 
#!
  
#*Qualitative Support for Knowledge Retrieval for Autonomous Agents.
#@Edward Szczerbicki
#t1997
#cCybernetics and Systems
#index783467
#% 
#!
  
#*Synergies between Statistical Data Analysis and Neural Networks in the Control of Rotary Blood Pumps.
#@Georg Dorffner,Christian Stöcklmayer,Christian Schmidt,Heinrich Schima
#t1997
#cCybernetics and Systems
#index783468
#% 
#!
  
#*Merleau-ponty, Embodied Cognition, and the Problem of Intentionality.
#@Lewis A. Loren,Eric Dietrich
#t1997
#cCybernetics and Systems
#index783469
#% 
#!
  
#*Long-range Correlations in Computer Programs.
#@Peter Kokol
#t1997
#cCybernetics and Systems
#index783470
#% 
#!
  
#*A Comparison of List Scheduling Heuristics for Communication Intensive Task Graphs.
#@Benjamin S. Macey,Albert Y. Zomaya
#t1997
#cCybernetics and Systems
#index783471
#% 
#!
  
#*Cybernetics of Conceptual Systems.
#@Stuart A. Umpleby
#t1997
#cCybernetics and Systems
#index783472
#% 
#!
  
#*Epistemological Aspects of Embodied Artificial Intelligence.
#@Erich Prem
#t1997
#cCybernetics and Systems
#index783473
#% 
#!
  
#*Emergence of Representation in Autonomous Agents.
#@Mark H. Bickhard
#t1997
#cCybernetics and Systems
#index783474
#% 
#!
  
#*Searching for Language Mechanisms in the Brain.
#@Valentino Braitenberg
#t1997
#cCybernetics and Systems
#index783475
#% 
#!
  
#*The Epistemology of Autism: Making a Case for an Embodied, Dynamic, and Historical Explanation.
#@Horst Hendriks-Jansen
#t1997
#cCybernetics and Systems
#index783476
#% 
#!
  
#*Consciousness: and so On.
#@Ranulph Glanville
#t1980
#cCybernetics and Systems
#index783477
#% 
#!
  
#*A Linguistic Variable for Importance of Fuzzy Sets.
#@Ronald R. Yager
#t1980
#cCybernetics and Systems
#index783478
#% 
#!
  
#*Organizational Behavior: a Vector of Single-valued Transformations within a Determinate Machine.
#@Jeffrey S. Kaiser
#t1980
#cCybernetics and Systems
#index783479
#% 
#!
  
#*An Isomorphism of Control in Natural, Social, and Cybernetic Systems.
#@Norman D. Cook
#t1980
#cCybernetics and Systems
#index783480
#% 
#!
  
#*A Foundation for a Theory of Possibility.
#@Ronald R. Yager
#t1980
#cCybernetics and Systems
#index783481
#% 
#!
  
#*Fuzzy Subsets of Type Ii in Decisions.
#@Ronald R. Yager
#t1980
#cCybernetics and Systems
#index783482
#% 
#!
  
#*Epistemology, Semantics, and Self-reference.
#@Annetta Pedretti
#t1980
#cCybernetics and Systems
#index783483
#% 
#!
  
#*Hierarchical Dynamic Optimization for Linear Discrete Systems.
#@Madan M. Gupta
#t1980
#cCybernetics and Systems
#index783484
#% 
#!
  
#*Factors Affecting the Comparative Advantages of Sequential and Batched Decision Making.
#@Jeffrey A. Hoffer,Miles H. Kennedy
#t1980
#cCybernetics and Systems
#index783485
#% 
#!
  
#*Simulation Results on the Evaluation of Economic Policies.
#@Carl-Louis Sandblom
#t1980
#cCybernetics and Systems
#index783486
#% 
#!
  
#*Basic Concepts on the Theoretical Treatment of Cybernetic Queueing Systems.
#@S. Madan
#t1980
#cCybernetics and Systems
#index783487
#% 
#!
  
#*Fuzzy Sets, Probabilities, and Decision.
#@Ronald R. Yager
#t1980
#cCybernetics and Systems
#index783488
#% 
#!
  
#*Very Strongly Constrained Problems: an Ant Colony Optimization Approach.
#@Vittorio Maniezzo,Matteo Roffilli
#t2008
#cCybernetics and Systems
#index783489
#%199034
#%877404
#%885433
#%924065
#%942451
#%951516
#%1113204
#%1275178
#%3004082
#!
  
#*Exploitation Procedure Based on eigenvector Revisited: the Concept of Weighted Preference Flows in multicriteria outranking Analysis.
#@Santha Chenayah,Eiji Takeda
#t2008
#cCybernetics and Systems
#index783490
#% 
#!
  
#*A Solution of Real-World Ocst Problems with a New Tree Encoding-Based Genetic Algorithm.
#@Jong Ryul Kim,Kyeong-Hoon Do,Wan Young Chung,Il Seok Ko
#t2008
#cCybernetics and Systems
#index783491
#%623742
#%1122118
#!
  
#*Select Topics in Legal Evidence and Assistance by Artificial Intelligence Techniques.
#@Ephraim Nissan
#t2008
#cCybernetics and Systems
#index783492
#%440262
#%746949
#%908088
#%1009807
#!
  
#*Vector Quantization of Images Using a Fuzzy Clustering Method.
#@Wan-Jui Lee,Jun-Shih Chung,Chen-Sen Ouyang,Shie-Jue Lee
#t2008
#cCybernetics and Systems
#index783493
#%1025959
#%1026953
#%1031235
#%3191117
#!
  
#*Some Time Random Variables Related to a Gompertz-Type Diffusion Process.
#@Ramón Gutiérrez Jáimez,Patricia Román,D. Romero,J. J. Serrano,F. Torres
#t2008
#cCybernetics and Systems
#index783494
#% 
#!
  
#*Inconsistency of Knowledge and Collective Intelligence.
#@Ngoc Thanh Nguyen
#t2008
#cCybernetics and Systems
#index783495
#%744568
#%882136
#%912258
#%941396
#!
  
#*Guest Editorial: Papers in Sensing and in Reasoning (Marco Somalvico Memorial Issue).
#@Ephraim Nissan,Giuseppina C. Gini,Marco Colombetti
#t2008
#cCybernetics and Systems
#index783496
#% 
#!
  
#*A Novel Method for Measuring the Structural Information Content of Networks.
#@Matthias Dehmer
#t2008
#cCybernetics and Systems
#index783497
#% 
#!
  
#*Business Excellence in Public-Utility Companies by Innovativeness Based on Dialectical Systems Thinking.
#@Branko Skafar,Matjaz Mulej
#t2008
#cCybernetics and Systems
#index783498
#% 
#!
  
#*Identifiability in Causal Bayesian Networks: a Gentle Introduction.
#@Marco Valtorta,Yimin Huang
#t2008
#cCybernetics and Systems
#index783499
#%15233
#%744597
#%3006704
#!
  
#*Heuristic Particle Swarm Optimization Learning-Based Image Compression System.
#@Hsuan-Ming Feng,Ching-Yi Chen,Fun Ye
#t2008
#cCybernetics and Systems
#index783500
#%1032654
#%1044393
#!
  
#*Player Co-Modelling in a Strategy Board Game: Discovering How to Play Fast.
#@Dimitris Kalles
#t2008
#cCybernetics and Systems
#index783501
#%367153
#%517266
#%567593
#%746040
#%776434
#%887483
#%1009473
#%1009433
#%1009885
#%1009861
#!
  
#*A Tool for Prototyping AIS Based Protection Systems for Ad Hoc and Sensor Networks.
#@Martin Drozda,Sebastian Schildt,Sven Schaust,Sandra Einhellinger,Helena Szczerbicka
#t2008
#cCybernetics and Systems
#index783502
#%506359
#%505719
#%597753
#%665057
#%667407
#%769813
#%783529
#%1127522
#%1141297
#!
  
#*War, Peace, and Fuzzy Logic.
#@Mory M. Ghomshei,John A. Meech,Reza Naderi
#t2008
#cCybernetics and Systems
#index783503
#% 
#!
  
#*Information macrodynamic Model and Information Structure of a Market Economic System.
#@Vladimir S. Lerner
#t2008
#cCybernetics and Systems
#index783504
#% 
#!
  
#*Reflexive Ontologies: Enhancing Ontologies with Self-Contained Queries.
#@Carlos Toro,Cesar Sanín,Edward Szczerbicki,Jorge Posada
#t2008
#cCybernetics and Systems
#index783505
#%912413
#!
  
#*A Method for Constructing a Pseudo Self-Dual Normal Basis.
#@Hiroaki Nasu,Yasuyuki Nogami,Satoshi Uehara,Ryo Namba,Yoshitaka Morikawa
#t2008
#cCybernetics and Systems
#index783506
#%1011905
#%1061622
#!
  
#*Fewer Hyper-Ellipsoids Fuzzy Rules Generation Using Evolutional Learning Scheme.
#@Hsuan-Ming Feng,Ching-Chang Wong
#t2008
#cCybernetics and Systems
#index783507
#%140
#%880282
#%3003260
#!
  
#*Editorial: Information and Knowledge Engineering for Intelligent Systems - Part I.
#@Edward Szczerbicki,Ngoc Thanh Nguyen
#t2008
#cCybernetics and Systems
#index783508
#% 
#!
  
#*Decision Support with Logical and Fuzzy Petri Nets.
#@Fedor Lehocki,Gabriel Juhás,Robert Lorenz,Helena Szczerbicka,Martin Drozda
#t2008
#cCybernetics and Systems
#index783509
#%873058
#%1112548
#%1112966
#%1113301
#%3005471
#!
  
#*Combining Technologies to Achieve Decisional Trust.
#@Cesar Sanín,Edward Szczerbicki,Carlos Toro
#t2008
#cCybernetics and Systems
#index783510
#%783505
#%912413
#!
  
#*Design and Implementation of GA-Based Fuzzy System on FPGA Chip.
#@Ching-Chang Wong,Yu-Han Lin
#t2008
#cCybernetics and Systems
#index783511
#%1079081
#%1152472
#!
  
#*Words as Classifiers of Documents According to their Historical Period and the Ethnic Origin of their Authors.
#@Yaakov HaCohen-Kerner,Dror Mughaz,Hananya Beck,Elchai Yehudai
#t2008
#cCybernetics and Systems
#index783512
#%2360
#%95249
#%172312
#%334855
#%335985
#%574511
#%595212
#%595312
#%595542
#%595624
#%596046
#%773382
#%818215
#%833067
#%935894
#%951107
#%982379
#%985064
#%1009356
#!
  
#*Using Autonomous System Topological Information in a Web Server Performance Prediction.
#@Leszek Borzemski,Ziemowit Nowak
#t2008
#cCybernetics and Systems
#index783513
#%396850
#%398877
#%588737
#%783258
#%794742
#%833098
#%1122148
#!
  
#*Asymmetrical Conditional Bayes Parameter Identification for Control Engineering.
#@Piotr Kulczycki,Malgorzata Charytanowicz
#t2008
#cCybernetics and Systems
#index783514
#%879988
#!
  
#*Smart Systems Integration: toward Overcoming the Problem of Complexity.
#@Edward Szczerbicki
#t2008
#cCybernetics and Systems
#index783515
#%783224
#%783225
#!
  
#*Ultrasonic-Based Localization of Cow Teats for Robotized Milking.
#@Domenico G. Sorrenti,Marco Cattaneo,Vincenzo Villa
#t2008
#cCybernetics and Systems
#index783516
#%771378
#%834022
#!
  
#*An Intelligent Security Agent for a Reliable Cipher System Using Pingpong.
#@Hoon Jae Lee,Il Seok Ko
#t2008
#cCybernetics and Systems
#index783517
#%484
#%18952
#%1150056
#!
  
#*Editorial: Information and Knowledge Engineering for Intelligent Systems - Part II.
#@Edward Szczerbicki,Ngoc Thanh Nguyen
#t2008
#cCybernetics and Systems
#index783518
#% 
#!
  
#*Smart Future of Knowledge Management.
#@Edward Szczerbicki
#t2008
#cCybernetics and Systems
#index783519
#% 
#!
  
#*Design of an Aerospace Launch Vehicle Autopilot Based on Optimized Emotional Learning Algorithm.
#@Ali Reza Mehrabian,Caro Lucas,Jafar Roshanian
#t2008
#cCybernetics and Systems
#index783520
#% 
#!
  
#*Genetic Algorithm Application to the Standard Arabic Phonemes Classification.
#@M. Aissiou,M. Guerti
#t2008
#cCybernetics and Systems
#index783521
#%140
#%748512
#!
  
#*An Improved Knowledge-Acquisition Strategy Based on Genetic Programming.
#@Chan-Sheng Kuo,Tzung-Pei Hong,Chuen-Lung Chen
#t2008
#cCybernetics and Systems
#index783522
#%760076
#%857230
#%1042531
#%1070095
#%1150518
#%3005879
#!
  
#*Influence of temperature on Swarmbots that Learn.
#@K. Sridhar Patnaik,J. F. Peters,Shamama Anwar
#t2008
#cCybernetics and Systems
#index783523
#% 
#!
  
#*Flar: an Adaptive Fuzzy Routing Algorithm for Communications Networks Using Mobile Ants.
#@Seyed Javad Mirabedini,Mohammad Teshnehlab,Mohammad Hassan Shenassa,Amir Masoud Rahmani
#t2008
#cCybernetics and Systems
#index783524
#%549841
#%981867
#%981863
#!
  
#*The Admissible Spherical Uncertainty for Dynamic Systems in State Space.
#@Alexander Weinmann
#t2008
#cCybernetics and Systems
#index783525
#%3355683
#!
  
#*Concurrent Path Construction for Global Map Building in Unknown Indoor Environments.
#@Mehtap Köse Ulukök,Adnan Acan
#t2008
#cCybernetics and Systems
#index783526
#%757682
#%3005879
#!
  
#*The Spatial Semantic Hierarchy Implemented with an Omnidirectional Vision System.
#@Emanuele Menegatti,Giovanni Aneloni,Mark Wright,Enrico Pagello
#t2008
#cCybernetics and Systems
#index783527
#%293001
#%745299
#%745377
#%745680
#%748010
#%757689
#%3006013
#!
  
#*Stereo Correspondence Estimation Using Multiwavelets Scale-Space Representation-Based Multiresolution Analysis.
#@Asim Bhatti,Saeid Nahavandi
#t2008
#cCybernetics and Systems
#index783528
#%129161
#%834038
#%907815
#%1031248
#%1164977
#!
  
#*Artificial Immune Systems in the Context of Misbehavior Detection.
#@Sven Schaust,Helena Szczerbicka
#t2008
#cCybernetics and Systems
#index783529
#%1171850
#%3004368
#!
  
#*Parallel Processing of Connection Streams in Nodes of Packet-Switched Computer Communication Systems.
#@Adam Grzech,Pawel Swiatek
#t2008
#cCybernetics and Systems
#index783530
#%783966
#!
  
#*Toward a Synergy between Simulation and Knowledge Management for Business Intelligence.
#@James Zhang,Douglas C. Creighton,Saeid Nahavandi
#t2008
#cCybernetics and Systems
#index783531
#%668307
#%667974
#%669158
#%671803
#%771900
#%845487
#%891855
#%891962
#%892252
#%893994
#%1129258
#!
  
#*Arabic Character Recognition Using Modified Fourier Spectrum (MFS) vs. Fourier Descriptors.
#@Sabri A. Mahmoud,Ashraf S. Mahmoud
#t2009
#cCybernetics and Systems
#index783532
#%345912
#%932727
#%1032277
#%1031939
#%1032351
#%1032731
#%1033148
#%1040782
#!
  
#*Contextualized Recommendation Based on Reality Mining from Mobile Subscribers.
#@Jason J. Jung,Hojin Lee,Kwang Sun Choi
#t2009
#cCybernetics and Systems
#index783533
#%87716
#%121807
#%748718
#%773443
#%1004593
#%1047109
#%1113261
#%1116863
#!
  
#*Spherical Uncertainties in Discrete-Time Systems.
#@Alexander Weinmann
#t2009
#cCybernetics and Systems
#index783534
#%783525
#!
  
#*Using Data Mining Algorithms in Web Performance Prediction.
#@Leszek Borzemski,Marta Kliber,Ziemowit Nowak
#t2009
#cCybernetics and Systems
#index783535
#%82776
#%255284
#%297346
#%567092
#%597868
#%783513
#!
  
#*Agent Enabled Adaptive Management of QoS Assured Provision of Composite Services.
#@Ryszard Kowalczyk,Mohan Baruwal Chhetri
#t2009
#cCybernetics and Systems
#index783536
#%57096
#%261090
#%771472
#%808931
#%928945
#%1113184
#%1113182
#%1130035
#%1129950
#!
  
#*Estimating Null Values in Relational Database Systems Having Negative Dependency Relationships between Attributes.
#@Shyi-Ming Chen,Shu-Ting Chang
#t2009
#cCybernetics and Systems
#index783537
#%873406
#%940068
#%1069429
#!
  
#*Experience-Based Knowledge Representation: Soeks.
#@Cesar Sanín,Edward Szczerbicki
#t2009
#cCybernetics and Systems
#index783538
#%745628
#%891991
#!
  
#*A Hybrid Method for Integrating Multiple Ontologies.
#@Trong Hai Duong,Ngoc Thanh Nguyen,GeunSik Jo
#t2009
#cCybernetics and Systems
#index783539
#%14348
#%335246
#%472193
#%598544
#%673996
#!
  
#*Evaluating Performance of Flow Line Systems with Blocking under Fuzzy Environments.
#@Shih-Pin Chen
#t2009
#cCybernetics and Systems
#index783540
#%793522
#%812382
#%813028
#%813409
#%880158
#%921497
#%940852
#%949730
#%981865
#%981863
#%1047904
#!
  
#*Implementing Decisional Trust: a First Approach for Smart Reliable Systems.
#@Cesar Sanín,Edward Szczerbicki
#t2009
#cCybernetics and Systems
#index783541
#%24706
#%189247
#%189287
#%783505
#%912413
#!
  
#*Towards a Modeling of Natural Systems.
#@Yu. G. Dmitriev,F. P. Tarasenko
#t2009
#cCybernetics and Systems
#index783542
#% 
#!
  
#*Editorial: Applied Intelligent Systems.
#@Edward Szczerbicki,Ngoc Thanh Nguyen
#t2009
#cCybernetics and Systems
#index783543
#% 
#!
  
#*Characterizing Classes of Structured Objects by Means of Information Inequalities.
#@Matthias Dehmer,Stephan Borgert
#t2009
#cCybernetics and Systems
#index783544
#% 
#!
  
#*Comparative Study of Some Solution Methods for Traveling Salesman Problem Using Genetic Algorithms.
#@Malay Bhattacharyya,Anup Kumar Bandyopadhyay
#t2009
#cCybernetics and Systems
#index783545
#%140
#%310643
#%951211
#!
  
#*Modelling of Statistical Laws for Texts Using a Pearson System.
#@Patricia Sastre-Vázquez,Yolanda Villacampa-Esteve,Fernando García-Alonso,José A. Reyes
#t2009
#cCybernetics and Systems
#index783546
#% 
#!
  
#*From Division to Integration of Natural and Social Sciences by "the Universal Dialectical Systems Theory".
#@Stane Bozicnik,Matjaz Mulej
#t2009
#cCybernetics and Systems
#index783547
#% 
#!
  
#*The Design of the Superheated-Steam temperature Immune Control System and its BIBO Stability Analysis.
#@Jie Wu,Jiong Shen,Yi-Guo Li
#t2009
#cCybernetics and Systems
#index783548
#% 
#!
  
#*Interpretation of the Generalized Zipf-Mandelbrot Law Parameters.
#@Patricia Sastre-Vázquez,Yolanda Villacampa-Esteve,José A. Reyes,Fernando García-Alonso
#t2009
#cCybernetics and Systems
#index783549
#%783546
#!
  
#*Cooperative Learning by Policy-Sharing in Multiple Agents.
#@Kao-Shing Hwang,Chia-Ju Lin,Chia-Yue Lo
#t2009
#cCybernetics and Systems
#index783550
#% 
#!
  
#*Solving the Open Shop Scheduling Problem via a Hybrid Genetic-Variable Neighborhood Search Algorithm.
#@G. I. Zobolas,Christos D. Tarantilis,George Ioannou
#t2009
#cCybernetics and Systems
#index783551
#%812244
#%812560
#%813452
#%814482
#%814992
#%832255
#%950482
#!
  
#*Using Multiple Correspondence Analysis with Membership Values when the System Study Yields Miscellaneous Datasets.
#@Pierre Loslever
#t2009
#cCybernetics and Systems
#index1267782
#% 
#!
  
#*Guest Editorial: Best of "Agent-Based Modeling and Simulation 2008" (Abmodsim-2).
#@Stefania Bandini,Paolo Petta,Giuseppe Vizzari
#t2009
#cCybernetics and Systems
#index1267783
#% 
#!
  
#*Stability Region Gradients.
#@Alexander Weinmann
#t2009
#cCybernetics and Systems
#index1267784
#% 
#!
  
#*A Physical System for Binocular Vision through saccade Generation and Vergence Control.
#@Xuejie Zhang,Alex Leng Phuan Tay
#t2009
#cCybernetics and Systems
#index1267785
#%119556
#%833735
#%835172
#%908491
#%908405
#%1022814
#%1031916
#%1032170
#%1033489
#!
  
#*A Comparative Study on Particle Swarm Optimization and Genetic Algorithms for Traveling Salesman Problems.
#@Mehmet Çunkas,M. Yasin Özsaglam
#t2009
#cCybernetics and Systems
#index1267786
#%261631
#%310800
#%783489
#%783545
#!
  
#*A New Hybrid Algorithm for Multi-Objective Distribution Feeder Reconfiguration.
#@Taher Niknam
#t2009
#cCybernetics and Systems
#index1267787
#%783235
#%981927
#!
  
#*Elements of a Documentation Framework for Agent-Based Simulation Models.
#@Cornelia Triebig,Franziska Klügl
#t2009
#cCybernetics and Systems
#index1267788
#%670780
#%671948
#%738733
#%745301
#!
  
#*A Neo-Schumpeterian Model of Energy Markets.
#@Ramon Scholz,Andreas Pyka
#t2009
#cCybernetics and Systems
#index1267789
#%738734
#%783263
#!
  
#*Customer Segmentation and Classification from blogs by Using Data Mining: an Example of VoIP Phone.
#@Long-Sheng Chen,Chun-Chin Hsu,Mu-Chen Chen
#t2009
#cCybernetics and Systems
#index1267790
#% 
#!
  
#*Hybrid Simulation Algorithms for an Agent-Based Model of the Immune Response.
#@Johannes Textor,Björn Hansen
#t2009
#cCybernetics and Systems
#index1267791
#%767396
#%826449
#%877007
#!
  
#*A Practical Fuzzy Digraph Model for Modeling Manufacturing Flexibility.
#@Adil Baykasoglu
#t2009
#cCybernetics and Systems
#index1267792
#% 
#!
  
#*Validation of CA Models of Pedestrian Dynamics with Fundamental Diagrams.
#@Andreas Schadschneider,Armin Seyfried
#t2009
#cCybernetics and Systems
#index1267793
#%23819
#%569637
#!
  
#*Traffic Video-Based Moving Vehicle Detection and Tracking in the Complex Environment.
#@Tao Gao,Zheng-guang Liu,Shi-Hong Yue,Jian-Qiang Mei,Jun Zhang
#t2009
#cCybernetics and Systems
#index1267794
#% 
#!
  
#*Generating Automatic Fuzzy System from Relational Database System for Estimating Null Values.
#@Shin-Jye Lee,Xiao-Jun Zeng,Hui-Shin Wang
#t2009
#cCybernetics and Systems
#index1267795
#%3006012
#!
  
#*Quality Analysis of Domain-Dependent Internet Archives.
#@Dariusz Król,Krzysztof Litwin
#t2010
#cCybernetics and Systems
#index1333350
#% 
#!
  
#*Modeling and Optimization of Complex Services in Service-Based Systems.
#@Adam Grzech,Pawel Swiatek
#t2009
#cCybernetics and Systems
#index1333344
#% 
#!
  
#*Ontology-Based Information Retrieval Using Fuzzy Concept Documentation.
#@Been-Chian Chien,Chih-Hung Hu,Ming-Yi Ju
#t2010
#cCybernetics and Systems
#index1333351
#% 
#!
  
#*Editorial: Applied Intelligence and Knowledge-Based Systems: Challenges, Approaches, and Case Studies - Part 1.
#@Edward Szczerbicki,Ngoc Thanh Nguyen
#t2009
#cCybernetics and Systems
#index1333349
#% 
#!
  
#*Investigating the Role of Knowledge-Based Technologies in the Sector of Nongovernmental Organizations.
#@Zofia Lapniewska,Edward Szczerbicki
#t2009
#cCybernetics and Systems
#index1333343
#% 
#!
  
#*Validation of an Agent and Ontology-Based Information Technology Assessment System.
#@Cezary Orlowski,Artur Ziólkowski,Adam Czarnecki
#t2010
#cCybernetics and Systems
#index1333352
#% 
#!
  
#*The Experimental Design for Data Mining to Discover Web Performance Issues in a Wide Area Network.
#@Leszek Borzemski
#t2010
#cCybernetics and Systems
#index1333353
#% 
#!
  
#*A Vehicle License Plate Detection Method for Intelligent Transportation System Applications.
#@Kaushik Deb,Kang-Hyun Jo
#t2009
#cCybernetics and Systems
#index1333346
#% 
#!
  
#*Editorial: Applied Intelligence and Knowledge Based Systems: Approaches and Case Studies - Part 2.
#@Edward Szczerbicki,Ngoc Thanh Nguyen
#t2010
#cCybernetics and Systems
#index1333356
#% 
#!
  
#*Processing Inconsistency of Knowledge in Determining Knowledge of a Collective.
#@Ngoc Thanh Nguyen
#t2009
#cCybernetics and Systems
#index1333348
#% 
#!
  
#*An Effective Attribute Clustering Approach for Feature Selection and Replacement.
#@Tzung-Pei Hong,Po-Cheng Wang,Yeong-Chyi Lee
#t2009
#cCybernetics and Systems
#index1333345
#% 
#!
  
#*Smart Knowledge-Sharing Platform for E-Decisional Community.
#@Leonardo Mancilla-Amaya,Cesar Sanín,Edward Szczerbicki
#t2010
#cCybernetics and Systems
#index1333355
#% 
#!
  
#*Workflow Centered Experience Management.
#@Bartosz Kucharski,Edward Szczerbicki
#t2009
#cCybernetics and Systems
#index1333347
#% 
#!
  
#*Smart Security Assessment of Composed Web Services.
#@Grzegorz Kolaczek,Krzysztof Juszczyszyn
#t2010
#cCybernetics and Systems
#index1333354
#% 
#!
  
#*Alerting Companies through on-Line Patent Trend Analysis.
#@Türkay Dereli,Alptekin Durmusoglu
#t2010
#cCybernetics and Systems
#index2851178
#% 
#!
  
#*Stability Region Robustness.
#@Alexander Weinmann
#t2010
#cCybernetics and Systems
#index2851173
#% 
#!
  
#*: Robust Reputation Ranking Based on Link Analysis in P2P Networks.
#@Yufeng Wang,Akihiro Nakao,Athanasios V. Vasilakos
#t2010
#cCybernetics and Systems
#index2851164
#% 
#!
  
#*Revisiting Overlooked Foundations of Evolutionary Computation: Part I.
#@David B. Fogel
#t2010
#cCybernetics and Systems
#index2851181
#% 
#!
  
#*Guest Editorial: Introduction to the Special Issue on Social Awareness in Smart Spaces: Part I.
#@Zhiwen Yu,Chris D. Nugent,Sajid Hussain,Jianhua Ma,Fabio Pianesi
#t2010
#cCybernetics and Systems
#index2851163
#% 
#!
  
#*A Need-Awaring Multi-Agent Approach for Ad Hoc Need Identification and Group Formation in Nomadic Community Computing.
#@Keunho Choi,Kyoung-Yun Kim,Ohbyung Kwon
#t2010
#cCybernetics and Systems
#index2851170
#% 
#!
  
#*Guest Editorial: Introduction to the Special Issue on Social Awareness in Smart Spaces - Part II.
#@Zhiwen Yu,Chris D. Nugent,Sajid Hussain,Jianhua Ma,Fabio Pianesi
#t2010
#cCybernetics and Systems
#index2851171
#% 
#!
  
#*Mobile Location-Based Social Networking in Supported Employment for People with Cognitive Impairments.
#@Yao-Jen Chang,Tsen-Yung Wang
#t2010
#cCybernetics and Systems
#index2851169
#% 
#!
  
#*Indoor Wayfinding Based on Wireless Sensor Networks for Individuals with Multiple Special Needs.
#@Yao-Jen Chang,Frank Tsen-Yung Wang
#t2010
#cCybernetics and Systems
#index2851176
#% 
#!
  
#*Synchronization of Chaotic Gyro Systems Using Recurrent Wavelet CMAC.
#@Chih-Min Lin,Ming-Hung Lin,Ya-Fu Peng
#t2010
#cCybernetics and Systems
#index2851180
#% 
#!
  
#*A Note on Weighted Fuzzy k-Means Clustering for Concept Decomposition.
#@Ch. Aswanikumar,S. Srinivas
#t2010
#cCybernetics and Systems
#index2851183
#% 
#!
  
#*Ncash: NFC Phone-Enabled Personalized Context Awareness Smart-Home Environment.
#@Yue-Shan Chang,Ching-Lung Chang,Yung-Shuan Hung,Ching-Tsorng Tsai
#t2010
#cCybernetics and Systems
#index2851162
#% 
#!
  
#*Daily Physiological Signal Monitoring System for Fostering Social Well-Being in Smart Spaces.
#@Ahyoung Choi,Woontack Woo
#t2010
#cCybernetics and Systems
#index2851168
#% 
#!
  
#*Dynamic Environment Robot Path Planning Using Hierarchical Evolutionary Algorithms.
#@Rahul Kala,Anupam Shukla,Ritu Tiwari
#t2010
#cCybernetics and Systems
#index2851182
#% 
#!
  
#*Automatic Flower Boundary Extraction Using Ipsoantk-Means Algorithm.
#@Dogan Aydin,Aybars Ugur
#t2010
#cCybernetics and Systems
#index2851184
#% 
#!
  
#*Information Storage System.
#@Yolanda Villacampa-Esteve,Patricia Sastre-Vázquez,José A. Reyes,Fernando García-Alonso
#t2010
#cCybernetics and Systems
#index2851177
#% 
#!
  
#*Toward Combining Automatic Resolution with Social Mediation for Resolving Multiuser Conflicts.
#@Choonsung Shin,Anind K. Dey,Woontack Woo
#t2010
#cCybernetics and Systems
#index2851167
#% 
#!
  
#*Agent-Based Social Simulation: a Dynamical-Systems Viewpoint.
#@Julyan H. E. Cartwright
#t2010
#cCybernetics and Systems
#index2851174
#% 
#!
  
#*Detection of Social Interaction in Smart Spaces.
#@Diane J. Cook,Aaron S. Crandall,Geetika Singla,Brian Thomas
#t2010
#cCybernetics and Systems
#index2851166
#% 
#!
  
#*A Demand Prediction Model for Replacement Parts Using a Markov renewal Process with Termination.
#@Yasushi Endow,Shin Tanimoto
#t2010
#cCybernetics and Systems
#index2851175
#% 
#!
  
#*Revisiting Overlooked Foundations of Evolutionary Computation: Part II.
#@David B. Fogel
#t2010
#cCybernetics and Systems
#index2851185
#% 
#!
  
#*A Model for Addition of User Information to Sensor Data Obtained from Living Environment.
#@Hitoshi Kawasaki,Ren Ohmura,Hirotaka Osawa,Michita Imai
#t2010
#cCybernetics and Systems
#index2851172
#% 
#!
  
#*The Fuzzy Generalized OWA Operator and its Application in Strategic Decision Making.
#@José M. Merigó,Montserrat Casanovas
#t2010
#cCybernetics and Systems
#index2851179
#% 
#!
  
#*Quantitative Evaluation of Group User Experience in Smart Spaces.
#@Zhu Wang,Xingshe Zhou,Zhiwen Yu,Haipeng Wang,Hongbo Ni
#t2010
#cCybernetics and Systems
#index2851165
#% 
#!
  
#*Business-Oriented Admission Control and Request Scheduling for E-Commerce Websites.
#@Leszek Borzemski,Grazyna Suchacka
#t2010
#cCybernetics and Systems
#index2964900
#% 
#!
  
#*Mobile Agent Security against Malicious Platforms.
#@Richard Ssekibuule
#t2010
#cCybernetics and Systems
#index2964899
#% 
#!
  
#*Do We Agree? Measuring Agreement on the Human judgments in Emotion Annotation of News Sentences.
#@Plaban Kumar Bhowmick,Pabitra Mitra,Anupam Basu
#t2010
#cCybernetics and Systems
#index2964905
#% 
#!
  
#*Uncertain Optimal Control with Application to a Portfolio Selection Model.
#@Yuanguo Zhu
#t2010
#cCybernetics and Systems
#index2964898
#% 
#!
  
#*Systems Theory Approach to the Health Care Organization on National Level.
#@Andrzej Bielecki,Ryszard Stocki
#t2010
#cCybernetics and Systems
#index2964906
#% 
#!
  
#*Using Human Behavior to Develop Knowledge-Based Virtual Organizations.
#@Leonardo Mancilla-Amaya,Cesar Sanín,Edward Szczerbicki
#t2010
#cCybernetics and Systems
#index2964907
#% 
#!
  
#*Guest Editorial: Smart Modeling Support for Managing Complexities and Dynamics of Knowledge-Based Systems - Part 1.
#@Edward Szczerbicki
#t2010
#cCybernetics and Systems
#index2964904
#% 
#!
  
#*Gaining Knowledge through Experience: Developing Decisional DNA Applications in Robotics.
#@Haoxi Zhang,Cesar Sanín,Edward Szczerbicki
#t2010
#cCybernetics and Systems
#index2964908
#% 
#!
  
#*Interactive Fuzzy Programming Based on Fractile Criterion Optimization Model for Two-Level Stochastic Linear Programming Problems.
#@Masatoshi Sakawa,Hideki Katagiri
#t2010
#cCybernetics and Systems
#index2964903
#% 
#!
  
#*A Complex System Engineering Design Model.
#@Mahmoud Efatmaneshnik,Carl Allen Reidsema
#t2010
#cCybernetics and Systems
#index2964901
#% 
#!
  
#*Translations of Service Level Agreement in Systems Based on Service-Oriented Architectures.
#@Adam Grzech,Piotr Rygielski,Pawel Swiatek
#t2010
#cCybernetics and Systems
#index2964902
#% 
#!
  
#*Preserving Virtual Engineering Knowledge through the Product Life Cycle.
#@Javier Vaquero,Carlos Toro,Manuel Graña
#t2011
#cCybernetics and Systems
#index3062546
#% 
#!
  
#*Multi-Agent Intelligent Planning Architecture for People Location and Orientation Using RFID.
#@María Dolores Rodríguez-Moreno,Bonifacio Castaño,Melquiades Carbajo,Angel Moreno,David F. Barrero Moreno,Pablo Muñoz
#t2011
#cCybernetics and Systems
#index3062547
#% 
#!
  
#*A Method for Scenario Recommendation in Intelligent E-Learning Systems.
#@Adrianna Kozierkiewicz-Hetmanska
#t2011
#cCybernetics and Systems
#index3062554
#% 
#!
  
#*Guest Editorial: Smart Modeling Support for Managing Complexities and Dynamics of Knowledge-Based Systems - Part 2.
#@Edward Szczerbicki
#t2011
#cCybernetics and Systems
#index3062544
#% 
#!
  
#*Smart Decision Infrastructure: Architecture Discussion.
#@Giovanni Gómez Zuluaga,Cesar Sanín,Edward Szczerbicki
#t2011
#cCybernetics and Systems
#index3062553
#% 
#!
  
#*An Approach to Smart Experience Management.
#@Bartosz Kucharski,Edward Szczerbicki
#t2011
#cCybernetics and Systems
#index3062543
#% 
#!
  
#*A Simulation Model of for the Study of Evolutionary Selection Mechanisms.
#@Matthias Becker,Helena Szczerbicka
#t2011
#cCybernetics and Systems
#index3062552
#% 
#!
  
#*Integration of a Voice Recognition System in a Social Robot.
#@F. Alonso-Martín,Miguel Angel Salichs
#t2011
#cCybernetics and Systems
#index3062542
#% 
#!
  
#*A Binocular Vision System with Attentive saccade and Spatial Variant Vergence Control.
#@Xuejie Zhang,Alex Leng Phuan Tay
#t2011
#cCybernetics and Systems
#index3062550
#% 
#!
  
#*Dynamic Interaction Networks versus Local Trend Models for Multiple Time-Series Prediction.
#@Harya Widiputra,Russel Pears,Nikola Kasabov
#t2011
#cCybernetics and Systems
#index3062545
#% 
#!
  
#*A Practical Approach to Prioritize Project Activities through Fuzzy Ranking.
#@Adil Baykasoglu,Tolunay Göçken,Vahit Kaplanoglu
#t2011
#cCybernetics and Systems
#index3062541
#% 
#!
  
#*Automatically Identifying citations in Hebrew-Aramaic Documents.
#@Yaakov HaCohen-Kerner,Nadav Schweitzer,Dror Mughaz
#t2011
#cCybernetics and Systems
#index3062551
#% 
#!
  
#*Subjective Mental Workload Assessment Based on Generalized Fuzzy Numbers.
#@Deng Yong
#t2011
#cCybernetics and Systems
#index3062557
#% 
#!
  
#*Toward Coherent Matching in Case-Based Classification.
#@Ning Xiong
#t2011
#cCybernetics and Systems
#index3062548
#% 
#!
  
#*Chord Recognition Using Neural Networks Based on Particle Swarm Optimization.
#@Cheng-Jian Lin,Chun-Cheng Peng
#t2011
#cCybernetics and Systems
#index3062549
#% 
#!
  
#*On Realizing the Shortest Time Strategy in a CA FF Pedestrian Dynamics Model.
#@Ekaterina Kirik,Tat'yana Yurgel'yan,Dmitriy Krouglov
#t2011
#cCybernetics and Systems
#index3062556
#% 
#!
  
#*Neighborhood-Based Vision Systems.
#@Christopher J. Henry,James F. Peters
#t2011
#cCybernetics and Systems
#index3062555
#% 
#!
  
#*Population-Based Multi-Agent Approach to Solving Machine Learning Problems.
#@Ireneusz Czarnowski,Piotr Jedrzejowicz
#t2011
#cCybernetics and Systems
#index3134439
#% 
#!
  
#*Improving Efficiency of Service-Oriented Context-Driven Software Agents.
#@Kutila Gunasekera,Seng Wai Loke,Arkady B. Zaslavsky,Shonali Krishnaswamy
#t2011
#cCybernetics and Systems
#index3134440
#% 
#!
  
#*Understanding Normative Personality.
#@Maurice Yolles,Gerhard Fink,Daniel Dauber
#t2011
#cCybernetics and Systems
#index3134438
#% 
#!
  
#*Collaborative Urban Computing: Serendipitous Cooperation between Users in an Urban Environment.
#@Iva Bojic,Vedran Podobnik,Mario Kusek,Gordan Jezic
#t2011
#cCybernetics and Systems
#index3134445
#% 
#!
  
#*A Bit-Parallel Algorithm for Sequential Pattern Matching with Wildcards.
#@Dan Guo,Xiao-Li Hong,Xuegang Hu,Jun Gao,Ying-Ling Liu,Gong-Qing Wu,Xindong Wu
#t2011
#cCybernetics and Systems
#index3134436
#% 
#!
  
#*Obituary: Professor Dr. Luigi M. Ricciardi.
#@Robert Trappl
#t2011
#cCybernetics and Systems
#index3134444
#% 
#!
  
#*A CBR-Based Delphi Model for Quality Group Decisions.
#@Wei-Lun Chang
#t2011
#cCybernetics and Systems
#index3134443
#% 
#!
  
#*Fuzzy Logic-Based Target Classification Using Kinematic Data.
#@Mateus de Araujo Fernandes,Hallysson Oliveira,Karl Heinz Kienitz
#t2011
#cCybernetics and Systems
#index3134437
#% 
#!
  
#*A Method for Complex Hierarchical Data Integration.
#@Marcin Maleszka,Ngoc Thanh Nguyen
#t2011
#cCybernetics and Systems
#index3134435
#% 
#!
  
#*Guest Editorial: Knowledge Processing Methodologies in Intelligent Autonomous Systems.
#@Edward Szczerbicki,Piotr Jedrzejowicz,Ngoc Thanh Nguyen
#t2011
#cCybernetics and Systems
#index3134434
#% 
#!
  
#*Agent-Based Modeling and Analysis of Socio-Technical Systems.
#@Alexei Sharpanskykh
#t2011
#cCybernetics and Systems
#index3134441
#% 
#!
  
#*Leap Effects among Robust Root Trajectories.
#@Alexander Weinmann
#t2011
#cCybernetics and Systems
#index3134442
#% 
#!
  
#*Monitoring Time-Aware Commitments within Agent-Based Simulation Environments.
#@Federico Chesani,Paola Mello,Marco Montali,Paolo Torroni
#t2011
#cCybernetics and Systems
#index3249959
#% 
#!
  
#*Learning to Avoid Risky Actions.
#@Maria Malfaz,Miguel Angel Salichs
#t2011
#cCybernetics and Systems
#index3249952
#% 
#!
  
#*Learning-by-Modeling: Insights from an Agent-Based Model of University-Industry Relationships.
#@Giorgio Triulzi,Andreas Pyka
#t2011
#cCybernetics and Systems
#index3249958
#% 
#!
  
#*Building User Task Space by Mining Temporally Proximate Desktop Actions.
#@Hamid Turab Mirza,Ling Chen,Abdul Majid,Gencai Chen
#t2011
#cCybernetics and Systems
#index3249957
#% 
#!
  
#*Efficient Methodologies to Handle Hanging Pages Using Virtual Node.
#@Ashutosh Kumar Singh,P. Ravi Kumar,Alex Goh Kwang Leng
#t2011
#cCybernetics and Systems
#index3249950
#% 
#!
  
#*A Framework for Processing Agent-Based Pedestrian Activity Simulations in Shopping Environments.
#@Jan Dijkstra,Joran Jessurun,Harry J. P. Timmermans,Bauke de Vries
#t2011
#cCybernetics and Systems
#index3249956
#% 
#!
  
#*Guest Editorial: Best OF "Agent Based Modelling and Simulation 2010" (ABModSim-3).
#@Stefania Bandini,Paolo Petta,Giuseppe Vizzari
#t2011
#cCybernetics and Systems
#index3249955
#% 
#!
  
#*Genetic Algorithm-Based Sensor Deployment with Area Priority.
#@Tahir Emre Kalayci,Aybars Ugur
#t2011
#cCybernetics and Systems
#index3249953
#% 
#!
  
#*Scene-Retrieved Attributes for Automatic License Plate Localization.
#@Chirag N. Paunwala,Suprava Patnaik
#t2011
#cCybernetics and Systems
#index3249954
#% 
#!
  
#*Large-Scale High-Fidelity Agent-Based Simulation in Air Traffic Domain.
#@Premysl Volf,David Sislák,Michal Pechoucek
#t2011
#cCybernetics and Systems
#index3249951
#% 
#!
  
#*Intuitionistic Fuzzy Sets Based Method for Fuzzy Time Series Forecasting.
#@Bhagawati P. Joshi,Sanjay Kumar
#t2012
#cCybernetics and Systems
#index3310283
#% 
#!
  
#*Degree-Constrained Minimum Spanning Tree Problem in Stochastic Graph.
#@Javad Akbari Torkestani
#t2012
#cCybernetics and Systems
#index3310285
#% 
#!
  
#*A Methodology for Provision of Sustainable Information Systems Security.
#@Borut Likar,Denis Trcek
#t2012
#cCybernetics and Systems
#index3310284
#% 
#!
  
#*High-Order ILC with Initial State Learning for Discrete-Time Delayed Systems.
#@Chuandong Li,Fali Ma,Shukai Duan
#t2012
#cCybernetics and Systems
#index3310282
#% 
#!
  
#*Decisional DNA: the Concept and its Implementation Platforms.
#@Cesar Sanín,Leonardo Mancilla-Amaya,Haoxi Zhang,Edward Szczerbicki
#t2012
#cCybernetics and Systems
#index3360852
#% 
#!
  
#*Selecting a Representative Data Set of the Required Size Using the Agent-Based Population Learning Algorithm.
#@Ireneusz Czarnowski,Piotr Jedrzejowicz
#t2012
#cCybernetics and Systems
#index3360851
#% 
#!
  
#*Continuous Q-Learning for Multi-Agent Cooperation.
#@Kao-Shing Hwang,Wei-Cheng Jiang,Yu-Hong Lin,Li-Hsin Lai
#t2012
#cCybernetics and Systems
#index3360848
#% 
#!
  
#*User Assignment and Movement Prediction in Wireless Networks.
#@Pawel Swiatek,Piotr Rygielski,Krzysztof Juszczyszyn,Adam Grzech
#t2012
#cCybernetics and Systems
#index3360861
#% 
#!
  
#*A Method for Ontology Alignment Based on Semantics of Attributes.
#@Marcin Pietranik,Ngoc Thanh Nguyen
#t2012
#cCybernetics and Systems
#index3360856
#% 
#!
  
#*Using Set of Experience Knowledge Structure to Extend a Rule Set of Clinical Decision Support System for Alzheimer's Disease Diagnosis.
#@Carlos Toro,Eider Sanchez,Eduardo Carrasco,Leonardo Mancilla-Amaya,Cesar Sanín,Edward Szczerbicki,Manuel Graña,Patricia Bonachela,Carlos Parra,Gloria Bueno,Frank Guijarro
#t2012
#cCybernetics and Systems
#index3360849
#% 
#!
  
#*Introducing the Concept of Decisional DNA-Based Web Content Mining.
#@Peng Wang,Cesar Sanín,Edward Szczerbicki
#t2012
#cCybernetics and Systems
#index3360850
#% 
#!
  
#*Teo: Full-Size Humanoid Robot Design Powered by a fuel Cell System.
#@S. Martínez,Concepción Alicia Monje Micharet,Alberto Jardón,Paolo Pierro,Carlos Balaguer,D. Muñoz
#t2012
#cCybernetics and Systems
#index3360859
#% 
#!
  
#*Estimating Knowledge quantity in the E-Decisional Community.
#@Leonardo Mancilla-Amaya,Edward Szczerbicki,Cesar Sanín
#t2012
#cCybernetics and Systems
#index3360847
#% 
#!
  
#*Bandwidth-Sensitive Routing: from Individualism to Collectivism.
#@Hamid Hajabdolali Bazzaz,Sajjad Zarifzadeh,Caro Lucas
#t2012
#cCybernetics and Systems
#index3360844
#% 
#!
  
#*Hybrid Model of the Evolution of Information Technology (IT) Support Organization.
#@Cezary Orlowski,Edward Szczerbicki
#t2012
#cCybernetics and Systems
#index3360862
#% 
#!
  
#*Making Digital TV Smarter: Capturing and Reusing Experience in Digital TV.
#@Haoxi Zhang,Cesar Sanín,Edward Szczerbicki
#t2012
#cCybernetics and Systems
#index3360853
#% 
#!
  
#*Integrating Path Planning, Routing, and Scheduling for Logistics Operations in manufacturing Facilities.
#@Elias K. Xidias,Andreas C. Nearchou,Nikos A. Aspragathos
#t2012
#cCybernetics and Systems
#index3360857
#% 
#!
  
#*Guest Editorial: Learning, Scheduling, Resource Optimization, and Evolution in Smart Artificial Systems: Challenges and Support.
#@Edward Szczerbicki,Cezary Orlowski
#t2012
#cCybernetics and Systems
#index3360860
#% 
#!
  
#*Building Domain Ontologies from Engineering Standards.
#@Carlos Toro,Javier Vaquero,Manuel Graña,Cesar Sanín,Edward Szczerbicki,Jorge Posada
#t2012
#cCybernetics and Systems
#index3360858
#% 
#!
  
#*Quality Assessment of Experiential Knowledge.
#@Leonardo Mancilla-Amaya,Cesar Sanín,Edward Szczerbicki
#t2012
#cCybernetics and Systems
#index3360846
#% 
#!
  
#*Client-Perceived Web Performance Knowledge Discovery through turning Bands Method.
#@Leszek Borzemski,Anna Kaminska-Chuchmala
#t2012
#cCybernetics and Systems
#index3360863
#% 
#!
  
#*Improving the Control of Single Robot Hose Transport.
#@José Manuel López-Guede,Borja Fernández-Gauna,Manuel Graña,Ekaitz Zulueta
#t2012
#cCybernetics and Systems
#index3360845
#% 
#!
  
#*A Mathematical Model that Learns an Adaptively Generated Novel Pattern in Quadruped Locomotion.
#@Satoshi Ito,Yuuichi Sahashi,Minoru Sasaki
#t2012
#cCybernetics and Systems
#index3360854
#% 
#!
  
#*Guest Editorial: Ontologies, Set of Experience, and Decisional DNA: Smart Tools and Techniques for Knowledge Engineering.
#@Edward Szczerbicki
#t2012
#cCybernetics and Systems
#index3360855
#% 
#!
  
#*A Hybrid Demand Forecasting Model Based on Empirical Mode Decomposition and Neural Network in TFT-LCD Industry.
#@Kwo-Liang Chen,Ching-Chiang Yeh,Tz-Ling Lu
#t2012
#cCybernetics and Systems
#index3454950
#% 
#!
  
#*Integrating Global and Local Voting of Classifiers.
#@Sotiris B. Kotsiantis
#t2012
#cCybernetics and Systems
#index3454953
#% 
#!
  
#*An Adaptive Expectation Genetic Algorithm Based on ANFIS and Multinational Stock Market volatility Causality for TAIEX Forecasting.
#@Liang-Ying Wei
#t2012
#cCybernetics and Systems
#index3454951
#% 
#!
  
#*Design of a Prediction Model for Cement Rotary Kiln Using Wavelet Projection Fuzzy Inference System.
#@A. Sharifi,Mahdi Aliyari Shoorehdeli,Mohammad Teshnehlab
#t2012
#cCybernetics and Systems
#index3454952
#% 
#!
  
#*Writer Identification of Arabic Text using Statistical and Structural Features.
#@Sameh M. Awaidah,Sabri A. Mahmoud
#t2013
#cCybernetics and Systems
#index3612773
#% 
#!
  
#*A cybernetic Decision Model of Market entry.
#@Daniela Grieco
#t2013
#cCybernetics and Systems
#index3612772
#% 
#!
  
#*Quantifying Nearness in Visual Spaces.
#@Christopher J. Henry,Sheela Ramanna,Daniel Levy
#t2013
#cCybernetics and Systems
#index3612771
#% 
#!
  
#*A New Distributed Job Scheduling Algorithm for Grid Systems.
#@Javad Akbari Torkestani
#t2013
#cCybernetics and Systems
#index3612774
#% 
#!
  
#*Systemic Modeling of Integrated Systems for Decision Making Early on in the Design Process.
#@Laurent Cauffriez,Dominique Renaux,Therese Bonte,Etienne Cocquebert
#t2013
#cCybernetics and Systems
#index3612775
#% 
#!
  
#*GiPSi: A Framework for Open Source/Open Architecture Software Development for Organ-Level Surgical Simulation.
#@Murat Cenk Cavusoglu,Tolga Goktekin,Frank Tendick
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111110
#% 
#!
  
#*Automatic 3-D Grayscale Volume Matching and Shape Analysis.
#@Gregoire Guetat,Matthieu Maitre,Laurene Joly,Sen-Lin Lai,Tzumin Lee,Yoshihisa Shinagawa
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111111
#% 
#!
  
#*ViVa: the virtual vascular project.
#@Gassan Abdoulaev,Sandro Cadeddu,Giovanni Delussu,Marco Donizelli,Luca Formaggia,Andrea Giachetti,Enrico Gobbetti,Andrea O. Leone,Cristina Manzi,Piero Pili,Alan L. Scheinine,Massimiliano Tuveri,Alberto Varone,Alessandro Veneziani,Gianluigi Zanetti,Antonio Zorcolo
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111112
#% 
#!
  
#*Applying object-oriented technologies in modeling and querying temporally oriented clinical databases dealing with temporal granularity and indeterminacy.
#@Carlo Combi,Giancarlo Cucchi,Francesco Pinciroli
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111113
#% 
#!
  
#*A knowledge creation info-structure to acquire and crystallize the tacit knowledge of health-care experts.
#@Syed Sibte Raza Abidi,Yu-N Cheah,Janet Curran-Smith
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111114
#% 
#!
  
#*Neural networks for computer-aided diagnosis: detection of lung nodules in chest radiograms.
#@Giuseppe Coppini,Stefano Diciotti,Massimo Falchini,N. Villari,Guido Valli
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111115
#% 
#!
  
#*Compact storage of medical images with patient information.
#@U. Rajendra Acharya,D. Acharya,P. Subbanna Bhat,U. C. Niranjan
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111116
#% 
#!
  
#*An open medical imaging workstation architecture for platform-independent 3-D medical image processing and visualization.
#@D. Cosic
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111117
#% 
#!
  
#*The installation and support of internationally distributed equipment for people with dementia.
#@Timothy Adlam,Richard Faulkner,Roger Orpwood,Kerry Jones,Jurate Macijauskiene,Ausra Budraitiene
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111118
#% 
#!
  
#*Guest editorial.
#@Terence Critchlow
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111119
#% 
#!
  
#*Fast JPEG 2000 decoder and its use in medical imaging.
#@A. Agarwal,Alan H. Rowberg,Yongmin Kim
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111120
#% 
#!
  
#*DataFoundry: information management for scientific data.
#@Terence Critchlow,Krzysztof Fidelis,Madhavan Ganesh,Ron Musick,Tom Slezak
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111121
#% 
#!
  
#*A support vectors classifier approach to predicting the risk of progression of adolescent idiopathic scoliosis.
#@Peter O. Ajemba,Lino Ramirez,Nelson G. Durdle,Doug L. Hill,V. James Raso
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111122
#% 
#!
  
#*The design and performance of a 2.5-GHz telecommand link for wireless biomedical monitoring.
#@G. C. Crumley,N. E. Evans,William G. Scanlon,J. B. Burns,T. G. Trouton
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111123
#% 
#!
  
#*A system for medical consultation and education using multimodal human/machine communication.
#@Metin Akay,Ivan Marsic,Attila Medl,Guangming Bu
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111124
#% 
#!
  
#*A technological model to define access to electronic clinical records.
#@Andrew Dalley,John Fulcher,David Bomba,Ken Lynch,Peter Feltham
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111125
#% 
#!
  
#*Quality Assessment of ECG Compression Techniques Using a Wavelet-Based Diagnostic Measure.
#@Amjed S. Al-Fahoum
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111126
#% 
#!
  
#*A novel mechatronic tool for computer-assisted arthroscopy.
#@Paolo Dario,Maria Chiara Carrozza,Maurilio Marcacci,Simona D'Attanasio,Bernardo Magnani,Oliver Tonet,Giuseppe Megali
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111127
#% 
#!
  
#*Perceptually tuned JPEG coder for echocardiac image compression.
#@Amjed S. Al-Fahoum,Ali M. Reza
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111128
#% 
#!
  
#*3-D snake for US in margin evaluation for malignant breast tumor excision using mammotome.
#@Ruey-Feng Chang,Wen-Jie Wu,Chih-Chi Tseng,Dar-Ren Chen,Woo Kyung Moon
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111129
#% 
#!
  
#*Imaging and visualization of 3-D cardiac electric activity.
#@Bin He,Dongsheng Wu
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111130
#% 
#!
  
#*Median-based robust algorithms for tracing neurons from noisy confocal microscope images.
#@Khalid A. Al-Kofahi,Ali Can,Sharie Lasek,Donald H. Szarowski,N. Dowell-Mesfin,William Shain,James N. Turner,Badrinath Roysam
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111131
#% 
#!
  
#*Hybrid Retinal Image Registration.
#@Thitiporn Chanwimaluang,Guoliang Fan,Stephen R. Fransen
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111132
#% 
#!
  
#*Rapid automated three-dimensional tracing of neurons from confocal image stacks.
#@Khalid A. Al-Kofahi,Sharie Lasek,Donald H. Szarowski,Christopher J. Pace,George Nagy,James N. Turner,Badrinath Roysam
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111133
#% 
#!
  
#*Detection of multiple sclerosis with visual evoked potentials - an unsupervised computational intelligence system.
#@T. J. Dasey,Evangelia Micheli-Tzanakou
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111134
#% 
#!
  
#*Enhanced Real-Time ECG Coder for Packetized Telecardiology Applications.
#@Álvaro Alesanco Iglesias,Salvador Olmos,Robert S. H. Istepanian,José García
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111135
#% 
#!
  
#*An intelligent remote monitoring system for artificial heart.
#@Jaesoon Choi,J. W. Park,Jinhan Chung,B. G. Min
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111136
#% 
#!
  
#*Editorial Telecommunications And The Reform Process In Public Health.
#@L. G. Kun
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111137
#% 
#!
  
#*Information Mining Over Heterogeneous and High-Dimensional Time-Series Data in Clinical Trials Databases.
#@Fatih Altiparmak,Hakan Ferhatosmanoglu,Selnur Erdal,D. C. Trost
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111138
#% 
#!
  
#*A tele-operated mobile ultrasound scanner using a light-weight robot.
#@Cécile Delgorge,Fabien Courreges,Lama Al Bassit,Cyril Novales,Christophe Rosenberger,Natalie Smith-Guerin,Concepció Brù,Rosa Gilabert,Maurizio Vannoni,Gérard Poisson,Pierre Vieyres
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111139
#% 
#!
  
#*Impact of Monitoring Technology in Assisted Living: Outcome Pilot.
#@Majd Alwan,Siddharth Dalal,David Mack,Steven W. Kell,Beverely Turner,Jon Leachtenauer,Robin A. Felder
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111140
#% 
#!
  
#*TMABoost: An Integrated System for Comprehensive Management of Tissue Microarray Data.
#@Francesca Demichelis,Andrea Sboner,Mattia Barbareschi,Rossana Dell'Anna
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111141
#% 
#!
  
#*Combining Rate-Adaptive Cardiac Pacing Algorithms Via Multiagent Negotiation.
#@Francesco Amigoni,Alessandro Beda,Nicola Gatti
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111142
#% 
#!
  
#*Interactive deformation of soft tissues with haptic feedback for medical learning.
#@Kup-Sze Choi,Hanqiu Sun,Pheng-Ann Heng
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111143
#% 
#!
  
#*Automated analysis of repetitive joint motion.
#@Chunmei Lu,Nicola J. Ferrier
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111144
#% 
#!
  
#*Versatile clinical information system design for emergency departments.
#@Teh Amouh,Monica Gemo,Benoit M. Macq,Jean Vanderdonckt,Abdul Wahed El Gariani,Marc S. Reynaert,Lambert Stamatakis,Frédéric Thys
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111145
#% 
#!
  
#*WebOnCOLL: medical collaboration in regional healthcare networks.
#@Catherine E. Chronaki,Dimitrios G. Katehakis,Xenophon Zabulis,Manolis Tsiknakis,Stelios C. Orphanoudakis
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111146
#% 
#!
  
#*Semantics-based information modeling for the health-care administration sector: the Citation platform.
#@A. G. Anagnostakis,M. Tzima,G. C. Sakellaris,Dimitrios I. Fotiadis,Aristidis Likas
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111147
#% 
#!
  
#*InternetQuestion and Answer (iQ&A): a Web-based survey technology.
#@Robert A. Dennis,Sanjiv S. Gambhir
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111148
#% 
#!
  
#*Auditory stimulus optimization with feedback from fuzzy clustering of neuronal responses.
#@Michael J. Anderson,Evangelia Micheli-Tzanakou
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111149
#% 
#!
  
#*Coherence of multiscale features for enhancement of digital mammograms.
#@Chun-Ming Chang,Andrew Laine
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111150
#% 
#!
  
#*Effects of video digitization in pubic arch interference assessment for prostate brachytherapy.
#@K. Haberman,Sayan D. Pathak,Yongmin Kim
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111151
#% 
#!
  
#*AMON: a wearable multiparameter medical monitoring and alert system.
#@Urs Anliker,Jamie A. Ward,Paul Lukowicz,Gerhard Tröster,François Dolveck,Michel Baer,Fatou Keita,Eran B. Schenker,Fabrizio Catarsi,Luca Coluccini,Andrea Belardinelli,Dror Shklarski,Menachem Alon,Etienne Hirt,Rolf Schmid,Milica Vuskovic
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111152
#% 
#!
  
#*A mobile teletrauma system using 3G networks.
#@Yuechun Chu,Aura Ganz
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111153
#% 
#!
  
#*A digital video system for the automated measurement of repetitive joint motion.
#@Chunmei Lu,Nicola J. Ferrier
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111154
#% 
#!
  
#*Relief for maritime medical emergencies through telematics.
#@George Anogianakis,Stavroula Maglavera,Andreas S. Pomportsis
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111155
#% 
#!
  
#*Managing knowledge integration in a national health-care crisis: lessons learned from combating SARS in Singapore.
#@Paul Raj Devadoss,Shan Ling Pan,S. Singh
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111156
#% 
#!
  
#*Flexible technologies and smart clothing for citizen medicine, home healthcare, and disease prevention.
#@Fabrice Axisa,P. M. Schmitt,Claudine Géhin,G. Delhomme,Eric McAdams,André Dittmar
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111157
#% 
#!
  
#*Quantitative comparison and analysis of brain image registration using frequency-adaptive wavelet shrinkage.
#@Ivo D. Dinov,Michael S. Mega,Paul M. Thompson,Roger P. Woods,De Witt L. Sumners,Elizabeth L. Sowell,Arthur W. Toga
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111158
#% 
#!
  
#*A direct-sequence spread-spectrum communication system for integrated sensor microsystems.
#@Nizamettin Aydin,Tughrul Arslan,David R. S. Cumming
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111159
#% 
#!
  
#*The construction of a simulation-based system for the development of powerful and realistic models and practicals for healthcare professionals.
#@Marianna Diomidous,I. Verginis,John Mantas
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111160
#% 
#!
  
#*Embolic Doppler Ultrasound Signal Detection Using Discrete Wavelet Transform.
#@Nizamettin Aydin,Farrokh Marvasti,H. S. Markus
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111161
#% 
#!
  
#*SOPHIA: an interactive cluster-based retrieval system for the OHSUMED collection.
#@Vladimir Dobrynin,David W. Patterson,Mykola Galushka,Niall Rooney
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111162
#% 
#!
  
#*A communication server for telemedicine applications.
#@Jing Bai,Bingyi Hu,Yonghong Zhang,Datian Ye
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111163
#% 
#!
  
#*Computer-Aided Continuous Drug Infusion: Setup and Test of a Mobile Closed-Loop System for the Continuous Automated Infusion of Insulin.
#@Ralf Dudde,Thomas Vering,G. Piechotta,R. Hintsche
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111164
#% 
#!
  
#*A pacemaker working status telemonitoring algorithm.
#@Jing Bai,Jianwu Lin
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111165
#% 
#!
  
#*A new concept toward computer-aided medical diagnosis - a prototype implementation addressing pulmonary diseases.
#@George-Peter K. Economou,Dimitris K. Lymberopoulos,Evy I. Karavatselou,Constantine A. Chassomeris
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111166
#% 
#!
  
#*Design and development of an interactive medical teleconsultation system over the World Wide Web.
#@Jing Bai,Yonghong Zhang,Bing Dai
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111167
#% 
#!
  
#*A three-generation model for teleradiology.
#@Uwe Engelmann,Andre Schröter,U. Baur,O. Werner,Markus Schwab,Henning Müller,Hans-Peter Meinzer
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111168
#% 
#!
  
#*Guest Editorial Introduction to the Special Issue on Advances in Clinical and Health-Care Knowledge Management.
#@Rajeev K. Bali,David Dagan Feng,Frada Burstein,Ashish N. Dwivedi
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111169
#% 
#!
  
#*A medical digital library to support scenario and user-tailored information retrieval.
#@Wesley W. Chu,David B. Johnson,Hooshang Kangarloo
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111170
#% 
#!
  
#*Agents acting and moving in healthcare scenario - a paradigm for telemedical collaboration.
#@Vincenzo Della Mea
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111171
#% 
#!
  
#*Segmentation algorithms for detecting microcalcifications in mammograms.
#@I. N. Bankman,T. Nizialek,I. Simon,O. B. Gatewood,I. N. Weinberg,W. R. Brody
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111172
#% 
#!
  
#*Weight-elimination neural networks applied to coronary surgery mortality prediction.
#@C. M. Ennett,Monique Frize
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111173
#% 
#!
  
#*Virtual reality treatment of flying phobia.
#@Rosa María Baños,Cristina Botella,C. Perpina,Mariano Alcañiz Raya,José Antonio Lozano,Jorge Osma,M. Gallardo
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111174
#% 
#!
  
#*Fractal analysis in the detection of colonic cancer images.
#@A. Nasser Esgiar,Raouf N. Gorgui-Naguib,Bayan S. Sharif,Mark K. Bennett,A. Murray
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111175
#% 
#!
  
#*Tailored reversible watermarking schemes for authentication of electronic clinical atlas.
#@Feng Bao,Robert H. Deng,Beng Chin Ooi,Yanjiang Yang
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111176
#% 
#!
  
#*Microscopic image analysis for quantitative measurement and feature identification of normal and cancerous colonic mucosa.
#@A. Nasser Esgiar,Raouf N. Gorgui-Naguib,Bayan S. Sharif,Mark K. Bennett,A. Murray
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111177
#% 
#!
  
#*Knowledge representation and sharing using visual semantic modeling for diagnostic medical image databases.
#@Adrian S. Barb,Chi-Ren Shyu,Yash Sethi
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111178
#% 
#!
  
#*LEAD: A Methodology for Learning Efficient Approaches to Medical Diagnosis.
#@S. J. Fakih,T. K. Das
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111179
#% 
#!
  
#*An Automated Tissue Preclassification Approach for Telepathology: Implementation and Performance Analysis.
#@M. Barr,S. McClellan,T. Winokur,G. Vaughn
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111180
#% 
#!
  
#*Automatic landmark extraction from image data using modified growing neural gas network.
#@Emad Fatemizadeh,Caro Lucas,Hamid Soltanian-Zadeh
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111181
#% 
#!
  
#*Visual Positioning of Previously Defined ROIs on Microscopic Slides.
#@Grigory Begelman,Michael Lifshits,Ehud Rivlin
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111182
#% 
#!
  
#*Integrating context-aware public displays into a mobile hospital information system.
#@Jesús Favela,Marcela Rodríguez,Alfredo Preciado,Víctor M. González
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111183
#% 
#!
  
#*Adopting telemedicine services in the airline framework.
#@F. Beltrame,K. Boddy,Piergiulio Maryni
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111184
#% 
#!
  
#*Guest editorial: multimedia information technology in biomedicine.
#@David Dagan Feng
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111185
#% 
#!
  
#*Neuroinformatics as a megascience issue.
#@Francesco Beltrame,Stephen H. Koslow
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111186
#% 
#!
  
#*Information technology applications in biomedical functional imaging.
#@David Dagan Feng
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111187
#% 
#!
  
#*On the integration of healthcare emergency systems in Europe: the WETS project case study.
#@F. Beltrame,Piergiulio Maryni,G. Orsi
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111188
#% 
#!
  
#*Dynamic image data compression in the spatial and temporal domains: clinical issues and assessment.
#@David Dagan Feng,Weidong Cai,Roger Fulton
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111189
#% 
#!
  
#*Augmented-reality communication for diagnostic tasks in cardiology.
#@Thomas Berlage
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111190
#% 
#!
  
#*A technique for extracting physiological parameters and the required input function simultaneously from PET image measurements: theory and simulation study.
#@David Dagan Feng,Koon-Pong Wong,Chi-Ming Wu,Wan-Chi Siu
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111191
#% 
#!
  
#*Using key performance indicators as knowledge-management tools at a regional health-care authority level.
#@Alexandros Berler,Sotiris Pavlopoulos,Dimitrios Koutsouris
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111192
#% 
#!
  
#*Automatic control of arterial carbon dioxide tension in mechanically ventilated patients.
#@Tyrone Fernando,J. Cade,J. Packer
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Telecommunication in healthcare for a better coordination between hospitals and GP's: routine application of the "ISAR-Telematics" project.
#@Régis Beuscart,Jean-Marie Renard,D. Delerue,A. Souf
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Automated DNA fragments recognition and sizing through AFM image processing.
#@Elisa Ficarra,Luca Benini,Enrico Macii,Giampaolo Zuccheri
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*A Planning System Based on Markov Decision Processes to Guide People With Dementia Through Activities of Daily Living.
#@Jennifer Boger,Jesse Hoey,Pascal Poupart,Craig Boutilier,Geoff Fernie,Alex Mihailidis
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*An XML model that enables the development of complex order sets by clinical experts.
#@Guilherme Del Fiol,Roberto A. Rocha,Richard L. Bradshaw,Nathan C. Hulse,Lorrie K. Roemer
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*mobilePDR : a mobile medical information system featuring update via Internet.
#@Miroslav Bojovic,Dragan Bojic
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Development of an interactive multimedia training simulator for responding to abortion clinic bomb threats.
#@Christopher A. Chung
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111199
#% 
#!
  
#*Medical image compression by sampling DCT coefficients.
#@Yung-Gi Wu
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Organic field effect transistors for textile applications.
#@Annalisa Bonfiglio,Danilo De Rossi,Tünde Kirstein,Ivo Locher,F. Mameli,Rita Paradiso,G. Vozzi
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111201
#% 
#!
  
#*On the performance of telemedicine system using 17-GHz orthogonally polarized microwave links under the influence of heavy rainfall.
#@Bernard Fong,Alvis Cheuk M. Fong,G. Y. Hong
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Computer-supported collaborative work (CSCW) in biomedical signal visualization and processing.
#@Yannick Bouillon,Fabrice Wendling,F. Bartolomei
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*A fundamental metric for continuity of care: modeling and performance evaluation.
#@Ricardo Citro,Sumit Ghosh,Peter G. Churgin
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Medical image compression by discrete cosine transform spectral similarity strategy.
#@Yung-Gi Wu,Shen-Chuan Tai
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111205
#% 
#!
  
#*CRIGOS: a compact robot for image-guided orthopedic surgery.
#@G. Brandt,Andreas Zimolong,Lionel Carrat,Philippe Merloz,H.-W. Staudte,Stéphane Lavallée,Klaus Radermacher,Günther Rau
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Compression guidelines for diagnostic telepathology.
#@David J. Foran,Peter Meer,Thomas V. Papathomas,Ivan Marsic
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Computer-assisted discrimination among malignant lymphomas and leukemia using immunophenotyping, intelligent image repositories, and telemicroscopy.
#@David J. Foran,Dorin Comaniciu,Peter Meer,Lauri A. Goodell
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111208
#% 
#!
  
#*The EASI project-improving the effectiveness and quality of image-guided surgery.
#@Marcel Breeuwer,John P. Wadley,H. L. T. de Bliek,Johannes Buurman,Paul Desmedt,Paul M. C. Gieles,Frans A. Gerritsen,N. L. Dorward,N. D. Kitchen,B. Velani,D. G. T. Thomas,Onno Wink,Jan D. Blankensteijn,Bert C. Eikelboom,W. P. Th. M. Mali,Max A. Viergever,Graeme P. Penney,Ronald P. Gaston,Derek L. G. Hill,Calvin R. Maurer Jr.,David J. Hawkes,Frederik Maes,Dirk Vandermeulen,Rudi Verbeeck,Paul Suetens,Georg Schmitz,Thorsten M. Buzug,Cristian Lorenz,Jürgen Sabczynski,Jürgen Weese,W. Zylka,M. H. Kuhn
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Piecewise Parametric Interpolation for Temporal Compression of Multijoint Movement Trajectories.
#@Richard A. Foulds
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#cIEEE Transactions on Information Technology in Biomedicine
#index1111210
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#!
  
#*Editorial emerging trends at the threshold of a new millennium.
#@Peter N. Brett,Brian L. Davies
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Decision support and disease management: a logic engineering approach.
#@John Fox,Richard Thomson
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Guest editorial.
#@Peter N. Brett,Brian L. Davies
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Conceptual framework of knowledge management for ethical decision-making support in neonatal intensive car.
#@Monique Frize,Lan Yang,Robin C. Walker,Annette M. O'Connor
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Schemes for the identification of tissue types and boundaries at the tool point for surgical needles.
#@Peter N. Brett,A. J. Harrison,T. A. Thomas
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Technology improvements for image-guided and minimally invasive spine procedures.
#@Kevin Cleary,Mark Clifford,Dan Stoianovici,Matthew T. Freedman,Seong K. Mun,Vance Watson
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111216
#% 
#!
  
#*Computer Assisted Radiology '97 Conference (Part 1 Of 2).
#@
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Database design and implementation for quantitative image analysis research.
#@Matthew S. Brown,Sumit Shah,Richard C. Pais,Yeng-Zhong Lee,Michael F. McNitt-Gray,Jonathan G. Goldin,Alfonso F. Cardenas,Denise R. Aberle
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111218
#% 
#!
  
#*Improving reliability of gene selection from microarray functional genomics data.
#@L. M. Fu,Eun Seog Youn
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Computer Assisted Radiology '97 Conference (Part 2 Of 2).
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#t1998
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Content-based retrieval of dynamic PET functional images.
#@Weidong Cai,David Dagan Feng,Roger Fulton
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Neural-network compensation methods for capacitive micromachined accelerometers for use in telecare medicine.
#@Elena I. Gaura,Richard J. Rider,Nigel Steele,Raouf N. Gorgui-Naguib
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Modeling of Workflow-Engaged Networks on Radiology Transfers Across a Metro Network.
#@Sergio Camorlinga,B. Schofield
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Performance analysis of multiplexed medical data transmission for mobile emergency care over the UMTS channel.
#@José Ramón Gállego,Ángela Hernández-Solana,María Canales,Javier Lafuente,Antonio Valdovinos,Julián Fernández-Navajas
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Rapid automated tracing and feature extraction from retinal fundus images using direct exploratory algorithms.
#@Ali Can,Hong Shen,James N. Turner,Howard L. Tanenbaum,Badrinath Roysam
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Remote processing server for ECG-based clinical diagnosis support.
#@José García,Ignacio Martínez Ruiz,Leif Sörnmo,Salvador Olmos,Angel Mur,Pablo Laguna
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Alignment of adjacent picture frames captured by a CLSM.
#@Martin Capek,Ivan Krekule
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#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Evaluation and application of a semantic network partition.
#@James Geller,Yehoshua Perl,Michael Halper,Zong Chen,Huanying Gu
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Electroactive polymer-based devices for e-textiles in biomedicine.
#@F. Carpi,D. De Rossi
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#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Comparing knowledge management in health-care and technical support organizations.
#@Biswadip Ghosh,Judy E. Scott
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Correction to "Electroactive Polymer-Based Devices for e-Textiles in Biomedicine".
#@F. Carpi,D. De Rossi
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#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*The implementation of a Quality-Net as a part of the European project DIABCARE Q-Net.
#@Katrin Gerlach,Anne-Kathrin Kaeding,S. Kottmair,Dieter Westphal,G. Henning,Klaus Piwernetz
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Clinical decision support, systems methodology, and telemedicine: their role in the management of chronic disease.
#@Ewart R. Carson,Derek G. Cramp,A. Morgan,Abdul V. Roudsari
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111233
#% 
#!
  
#*Ray Casting With "On-the-Fly" Region Growing: 3-D Navigation Into Cardiac MSCT Volume.
#@Jean-Louis Coatrieux,K. Rioual,Cemil Göksu,E. Unanua,Pascal Haigron
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111234
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#!
  
#*The virtual microscope.
#@Ümit V. Çatalyürek,Michael D. Beynon,Chialin Chang,Tahsin M. Kurç,Alan Sussman,Joel H. Saltz
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Computer-assisted diagnosis system in digestive endoscopy.
#@Jean-Michel Cauvin,Clara Le Guillou,Basel Solaiman,Michel Robaszkiewicz,P. Le Beux,Christian Roux
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111236
#% 
#!
  
#*A data-hiding technique with authentication, integration, and confidentiality for electronic patient records.
#@Hui-Mei Chao,Chin-Ming Hsu,Shaou-Gang Miaou
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111237
#% 
#!
  
#*A discrete curvature-based deformable surface model with application to segmentation of volumetric images.
#@A. Ghanei,Hamid Soltanian-Zadeh
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Closed-loop glucose control in critically ill patients using continuous glucose monitoring system (CGMS) in real time.
#@F. Chee,Y. Fernando,P. V. van Heerden
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*A Wavelet-Based Region of Interest Encoder for the Compression of Angiogram Video Sequences.
#@David Gibson,Michael Spann,Sandra I. Woolley
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Partitioning the UMLS semantic network.
#@Zong Chen,Yehoshua Perl,Michael Halper,James Geller,Huanying Gu
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111241
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#!
  
#*Virtual surgery in a (tele-)radiology framework.
#@Gerald-P. Glombitza,Harald Evers,Stefan Haßfeld,Uwe Engelmann,Hans-Peter Meinzer
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*A Prototype for Unsupervised Analysis of Tissue Microarrays for Cancer Research and Diagnostics.
#@Wenjin Chen,Michael Reiss,David J. Foran
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*A computer-aided diagnostic system to characterize CT focal liver lesions: Design and optimization of a neural network classifier.
#@M. Gletsos,Stavroula G. Mougiakakou,George K. Matsopoulos,Konstantina S. Nikita,A. S. Nikita,D. Kelekis
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Watershed-Presegmented Snake for Boundary Detection and Tracking of Left Ventricle in Echocardiographic Images.
#@J. Cheng,S. W. Foo,S. M. M. Krishnan
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111245
#% 
#!
  
#*A broadband multimedia collaborative system for advanced teleradiology and medical imaging diagnosis.
#@Enrique J. Gómez,Francisco del Pozo,E. J. Ortiz,Norberto Malpica,H. Rahms
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#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*A novel approach to diagnose diabetes based on the fractal characteristics of retinal images.
#@Shu-Chen Cheng,Yueh-Min Huang
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*A computer-assisted training/monitoring system for TURP structure and design.
#@M. P. S. F. Gomes,Adrian R. W. Barrett,A. G. Timoney,Brian L. Davies
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*A nurse rostering system using constraint programming and redundant modeling.
#@B. M. W. Cheng,Jimmy Ho-Man Lee,J. C. K. Wu
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#cIEEE Transactions on Information Technology in Biomedicine
#index1111249
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#!
  
#*Analysis of trabecular bone structure using Fourier transforms and neural networks.
#@Jenny S. Gregory,R. M. Junold,Peter E. Undrill,Richard M. Aspen
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*An architecture for Naval telemedicine.
#@William J. Chimiak,Robert O. Rainer,J. M. Chimiak,Ralph Martinez
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#cIEEE Transactions on Information Technology in Biomedicine
#index1111251
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#!
  
#*Technical guidelines for enhancing privacy and data protection in modern electronic medical environments.
#@Dimitris Gritzalis,Costas Lambrinoudakis,Dimitrios Lekkas,S. Deftereos
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Finding the mitral annular lines from 2-D + 1-D precordial echocardiogram using graph-search technique.
#@Yu-Tai Ching,Shyh-Jye Chen,Chew-Liang Chang,Chih-Yang Lin,Yu-Hsian Liu
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Wavelet-based space-frequency compression of ultrasound images.
#@Ed Chiu,Jacques Vaisey,M. Stella Atkins
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111254
#% 
#!
  
#*A CORBA-based integration of distributed electronic healthcare records using the Synapses approach.
#@Jane Grimson,William Grimson,Damon Berry,Gaye Stephens,Eoghan Felton,Dipak Kalra,Pieter J. Toussaint,Onno W. Weier
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#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*A software data generator for radiographic imaging investigations.
#@D. Lazos,Z. Kolisti,N. Pallikarakis
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111256
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#!
  
#*Abstracting human control strategy in projecting light source.
#@Yangsheng Xu,Jiong Zhang
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#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Laryngeal pathology detection by means of class-specific neural maps.
#@Stefan Todorov Hadjitodorov,B. Boyanov,B. Teston
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#cIEEE Transactions on Information Technology in Biomedicine
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#*Biomedical information technology: medicine and health care in the digital future.
#@Swamy Laxminarayan,Jean-Louis Coatrieux,Christian Roux,Stanley M. Finkelstein,Alan V. Sahakian,Susan M. Blanchard
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
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#*A novel mobile transtelephonic system with synthesized 12-lead ECG.
#@L. Hadzievski,B. Bojovic,V. Vukcevic,P. Belicev,S. Pavlovic,Z. Vasiljevic-Pokrajcic,M. Ostojic
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Computer-Aided Kidney Segmentation on Abdominal CT Images.
#@D.-T. Lin,C.-C. Lei,S.-W. Hung
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*A screening gate to prevent entry of mobile telephone handsets in the speaking/standby mode into prohibited and restricted areas.
#@Eisuke Hanada,Yoshiaki Watanabe,Yoshiaki Nose
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111262
#% 
#!
  
#*The design and applications of a recursive molecular modeling framework.
#@Curtis Lisle,Rebecca J. Parsons
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#cIEEE Transactions on Information Technology in Biomedicine
#index1111263
#% 
#!
  
#*A Meta-Analysis of the Training Effectiveness of Virtual Reality Surgical Simulators.
#@Syed Haque,Shankar Srinivasan
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111264
#% 
#!
  
#*Remote sessions and frequency analysis for improved insight into cerebral function during pediatric and neonatal intensive care.
#@N. Lofgren,K. Lindecrantz,M. Thordstein,A. Hedstrom,B. G. Wallin,S. Andreasson,A. Flisberg,I. Kjellmer
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*A computer-based method for the assessment of body-image distortions in anorexia-nervosa patients.
#@Daniel Harari,Miriam Furst,Nahum Kiryati,Asaf Caspi,Michael Davidson
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*A new preprocessing approach for cell recognition.
#@X. Long,W. L. Cleveland,Y. L. Yao
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#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Combining a scientific approach and prototyping in the design of EHCR systems.
#@Arie Hasman,Huibert J. Tange,M. Vissers
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#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Incremental adoption of information security in health-care organizations: implications for document management.
#@Daniel P. Lorence,Richard Churchill
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#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Virtual reality in medicine-computer graphics and interaction techniques.
#@Michael Haubner,Christian Krapichler,Andreas Lösch,Karl-Hans Englmeier,W. Van Eimeren
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Clinical knowledge management using computerized patient record systems: is the current infrastructure adequate?
#@Daniel P. Lorence,Richard Churchill
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#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Intelligent Inferencing and Haptic Simulation for Chinese Acupuncture Learning and Training.
#@Pheng-Ann Heng,Tien-Tsin Wong,Rong Yang,Yim-Pan Chui,Yong-Ming Xie,K.-S. Leung,P.-C. Leung
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#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Strain sensing fabric for hand posture and gesture monitoring.
#@Federico Lorussi,Enzo Pasquale Scilingo,M. Tesconi,Alessandro Tognetti,Danilo De Rossi
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#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Exploring sitting posture and discomfort using nonlinear analysis methods.
#@S. Hermann
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#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*A Model for the Measurement of Patient Activity in a Hospital Suite.
#@Gilles LeBellego,Norbert Noury,G. Virone,M. Mousseau,Jacques Demongeot
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#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Real-time ECG transmission via Internet for nonclinical applications.
#@Alfredo I. Hernández,Fernando Mora,Guillermo Villegas,Gianfranco Passariello,Guy Carrault
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#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Full-field direct digital telemammography: technical components, study protocols, and preliminary results.
#@Shieh-Liang Lou,Edward A. Sickles,H. K. Huang,David R. Hoogstrate,Fei Cao,Jun Wang,Mohammad Jahangiri
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#*Dynamic image data compression in spatial and temporal domains: theory and algorithm.
#@Dino Ho,David Dagan Feng,Kewei Chen
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#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*LV shape and motion: B-spline-based deformable model and sequential motion decomposition.
#@Guo Luo,Pheng-Ann Heng
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#cIEEE Transactions on Information Technology in Biomedicine
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#*Evaluation of telemedical services.
#@R. Holle,Gudrun Zahlmann
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
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#*Home telecare system using cable television plants - an experimental field trial.
#@Ren-Guey Lee,Heng-Shuen Chen,Chung-Chih Lin,Kuang-Chiung Chang,Jyh-Horng Chen
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#cIEEE Transactions on Information Technology in Biomedicine
#index1111281
#% 
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#*Identifying the combination of genetic factors that determine susceptibility to cervical cancer.
#@Jorng-Tzong Horng,Kai-Chih Hu,Li-Cheng Wu,Hsien-Da Huang,Feng-Mao Lin,Shir-Ly Huang,Horn-Cheng Lai,Ton-Yuen Chu
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111282
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#!
  
#*Automatic Image Hanging Protocol for Chest Radiographs in PACS.
#@Hui Luo,Wei Hao,D. H. Foos,C. W. Cornelius
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#cIEEE Transactions on Information Technology in Biomedicine
#index1111283
#% 
#!
  
#*Database of repetitive elements in complete genomes and data mining using transcription factor binding sites.
#@Jorng-Tzong Horng,Feng-Mao Lin,J. H. Lin,Hsien-Da Huang,Baw-Jhiune Liu
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111284
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#!
  
#*The citizen health system (CHS): a Modular medical contact center providing quality telemedicine services.
#@Nicos Maglaveras,Ioanna Chouvarda,Vassilis Koutkias,George Gogou,Irini Lekka,Dimitrios Goulis,Avram Avramidis,Charalambos Karvounis,George Louridas,E. Andrew Balas
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#cIEEE Transactions on Information Technology in Biomedicine
#index1111285
#% 
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#*Telemedical information systems.
#@Alexander Horsch,Thomas Balbach
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
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#*An integrated computer supported acquisition, handling, and characterization system for pigmented skin lesions in dermatological images.
#@Ilias Maglogiannis,Sotiris Pavlopoulos,Dimitrios Koutsouris
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111287
#% 
#!
  
#*Volume manipulations for Simulating bone and joint surgery.
#@Ming-Dar Tsai,Ming-Shium Hsieh
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111288
#% 
#!
  
#*Construction of a human topological model from medical data.
#@Nadia Magnenat-Thalmann,Frederic Cordier
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111289
#% 
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#*Implementation of a WAP-based telemedicine system for patient monitoring.
#@Kevin Hung,Yuan-Ting Zhang
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111290
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#*Robust model-based vasculature detection in noisy biomedical images.
#@Vijay Mahadevan,Harihar Narasimha-Iyer,Badrinath Roysam,Howard L. Tanenbaum
#t2004
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#*Scalable medical data compression and transmission using wavelet transform for telemedicine applications.
#@Wen-Jyi Hwang,Ching-Fung Chine,Kuo-Jung Li
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
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#*Skeletal growth estimation using radiographic image processing and analysis.
#@Sasan Mahmoodi,Bayan S. Sharif,E. Graeme Chester,J. P. Owen,R. Lee
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*A Web-based TelePACS using an asymmetric satellite system.
#@Seon-Cheol Hwang,Myoung-Ho Lee
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
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#*Aggregating Automatically Extracted Regulatory Pathway Relations.
#@Byron Marshall,Hua Su,Daniel McDonald,Shauna Eggers,Hsinchun Chen
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
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#*Telemedicine and terminology: different needs of context information.
#@Josef Ingenerf
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
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#*Teleworks: a CSCW application for remote medical diagnosis support and teleconsultation.
#@Lambros Makris,I. Kamilatos,E. V. Kopsacheilis,Michael G. Strintzis
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
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#*A new research challenge: persuasive technology to motivate healthy aging.
#@Stephen S. Intille
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
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#*A workflow-based approach to virtual patient record security.
#@Flora Malamateniou,George Vassilacopoulos,P. Tsanakas
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111299
#% 
#!
  
#*Guest editorial special issue on mobile telemedicine and telehealth systems.
#@Robert S. H. Istepanian
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111300
#% 
#!
  
#*From data to knowledge: a method for modeling hospital logistic processes.
#@Laura Maruster,René J. Jorna
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Telemedicine in the United Kingdom: current status and future prospects.
#@Robert S. H. Istepanian
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111302
#% 
#!
  
#*Identifying multiple abdominal organs from CT image series using a multimodule contextual neural network and spatial fuzzy rules.
#@Chien-Cheng Lee,Pau-Choo Chung,Hong-Ming Tsai
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111303
#% 
#!
  
#*Strong Compound-Risk Factors: Efficient Discovery Through Emerging Patterns and Contrast Sets.
#@Jinyan Li,Qiang Yang
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111304
#% 
#!
  
#*ECG data compression using wavelets and higher order statistics methods.
#@Robert S. H. Istepanian,Leontios J. Hadjileontiadis,Stavros M. Panas
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111305
#% 
#!
  
#*Computer-aided prototype system for nose surgery.
#@Tong-Yee Lee,Chao-Hung Lin,Han-Ying Lin
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111306
#% 
#!
  
#*Guest Editorial Introduction to the Special Section on M-Health: Beyond Seamless Mobility and Global Wireless Health-Care Connectivity.
#@Robert S. H. Istepanian,Emil Jovanov,Y. T. Zhang
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111307
#% 
#!
  
#*Analysis of information and communication needs in rural primary health care in developing countrie.
#@Andrés Martínez,Valentín Villarroel,Joaquín Seoane,Francisco del Pozo
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111308
#% 
#!
  
#*Optimal zonal wavelet-based ECG data compression for a mobile telecardiology system.
#@Robert S. H. Istepanian,Arthur A. Petrosian
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111309
#% 
#!
  
#*A 3-D marker-free system for the analysis of movement disabilities - an application to the legs.
#@Franck Marzani,Elodie F. Calais,Louis Legrand
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111310
#% 
#!
  
#*Microcontroller-based underwater acoustic ECG telemetry system.
#@Robert S. H. Istepanian,Bryan Woodward
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111311
#% 
#!
  
#*Context-based lossless and near-lossless compression of EEG signals.
#@Nasir D. Memon,Xuan Kong,J. Cinkler
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111312
#% 
#!
  
#*Information Extraction From Sound for Medical Telemonitoring.
#@Dan Istrate,Eric Castelli,Michel Vacher,Laurent Besacier,Jean-François Serignat
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111313
#% 
#!
  
#*Automatic retinal image registration scheme using global optimization techniques.
#@George K. Matsopoulos,Nicolaos A. Mouravliansky,Konstantinos K. Delibasis,Konstantina S. Nikita
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111314
#% 
#!
  
#*A direct multi-volume rendering method aiming at comparisons of 3-D images and models.
#@Jean-José Jacq,Christian Roux
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111315
#% 
#!
  
#*The use of computer vision in an intelligent environment to support aging-in-place, safety, and independence in the home.
#@Alex Mihailidis,Brent Carmichael,Jennifer Boger
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111316
#% 
#!
  
#*A telematic system for oncology based on electronic health and patient records.
#@A. James,Y. Wilcox,Raouf N. Gorgui-Naguib
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111317
#% 
#!
  
#*Comparison of two exploratory data analysis methods for fMRI: unsupervised clustering versus independent component analysis.
#@Anke Meyer-Bäse,Axel Wismüller,Oliver Lange
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111318
#% 
#!
  
#*The development of virtual reality therapy (VRT) system for the treatment of acrophobia and therapeutic case.
#@Dong Pyo Jang,Jeonghun Ku,Young H. Choi,Brenda K. Wiederhold,San W. Nam,In-Young Kim,Sun I. Kim
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111319
#% 
#!
  
#*Prediction of care class by local additive reference to prototypical examples.
#@T. Miyano,T. Tsutsui,Y. Seki,S. Higashino,H. Taniguchi
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111320
#% 
#!
  
#*The display of photographic-quality images on the Web: a comparison of two technologies.
#@Chiang S. Jao,Daniel B. Hier,S. U. Brint
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111321
#% 
#!
  
#*Aligning biological sequences on distributed bus networks: a divisible load scheduling approach.
#@Wong Han Min,Bharadwaj Veeravalli
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111322
#% 
#!
  
#*Neural network-based assessment of prognostic markers and outcome prediction in bilharziasis-associated bladder cancer.
#@Wei Ji,Raouf N. Gorgui-Naguib,M. Ghoneim
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111323
#% 
#!
  
#*Mobile tele-echography: user interface design.
#@Cristina Cañero Morales,Nikolaos Thomos,George A. Triantafyllidis,George C. Litos,Michael G. Strintzis
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111324
#% 
#!
  
#*Unobtrusive monitoring of computer interactions to detect cognitive status in elders.
#@Holly Brügge Jimison,Misha Pavel,James McKanna,Jesse Pavel
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111325
#% 
#!
  
#*A contextual role-based access control authorization model for electronic patient record.
#@G. H. M. B. Motta,Sérgio Shiguemi Furuie
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111326
#% 
#!
  
#*An adaptive nonlinear diffusion algorithm for filtering medical images.
#@Jesse S. Jin,Yung Wang,John B. Hiller
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111327
#% 
#!
  
#*Interactive 3-D virtual colonoscopy system.
#@Tong-Yee Lee,Ping-Hsien Lin,Chao-Hung Lin,Yung-Nien Sun,Xi-Zhang Lin
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111328
#% 
#!
  
#*Tactical audio and acoustic rendering in biomedical applications.
#@Emil Jovanov,Kristen Wegner,Vlada Radivojevic,Dusan Starcevic,M. S. Quinn,Daniel B. Karron
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111329
#% 
#!
  
#*Three-dimensional facial model reconstruction and plastic surgery simulation.
#@Tong-Yee Lee,Yung-Nien Sun,Yung-Ching Lin,Leewen Lin,Chungnan Lee
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111330
#% 
#!
  
#*Estimation of the stapes-bone thickness in the stapedotomy surgical procedure using a machine-learning technique.
#@Vassilis G. Kaburlasos,Vassilios Petridis,Peter N. Brett,Dave A. Baker
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111331
#% 
#!
  
#*Information analysis and validation of intelligent monitoring systems in intensive care units.
#@Vicente Moret-Bonillo,Eduardo Mosqueira-Rey,Amparo Alonso-Betanzos
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111332
#% 
#!
  
#*Alerts in Mobile Healthcare Applications: Requirements and Pilot Study.
#@Eleanna Kafeza,Dickson K. W. Chiu,Shing-Chi Cheung,Marina Kafeza
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111333
#% 
#!
  
#*Editorial Car Special Issue Of The IEEE Transactions On Information Technology In Biomedicine.
#@Heinz U. Lemke,Michael W. Vannier
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111334
#% 
#!
  
#*Implementation of a Real-Time Human Movement Classifier Using a Triaxial Accelerometer for Ambulatory Monitoring.
#@Dean M. Karantonis,M. R. Narayanan,M. Mathie,Nigel H. Lovell,Branko G. Celler
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111335
#% 
#!
  
#*Meeting medical terminology needs-the ontology-enhanced Medical Concept Mapper.
#@Gondy Leroy,Hsinchun Chen
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111336
#% 
#!
  
#*OTE-TS - a new value-added telematics service for telemedicine applications.
#@Evy I. Karavatselou,George-Peter K. Economou,Constantine A. Chassomeris,Vassiliki Danelli-Mylonas,Dimitris K. Lymberopoulos
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111337
#% 
#!
  
#*Multidimensional text classification for drug information.
#@Verayuth Lertnattee,Thanaruk Theeramunkong
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111338
#% 
#!
  
#*Computer-aided tumor detection in endoscopic video using color wavelet features.
#@S. A. Karkanis,Dimitrios K. Iakovidis,Dimitrios E. Maroulis,Dimitris A. Karras,M. Tzivras
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111339
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#!
  
#*Integration of clinical information across patient records: a comparison of mechanisms used to enforce semantic coherence.
#@Angelo Rossi Mori,Fabrizio Consorti
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111340
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#!
  
#*The Design of an Internet-Based System to Maintain Home Monitoring Adherence by Lung Transplant Recipients.
#@B. C. Karl,Stanley M. Finkelstein,W. N. Robiner
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111341
#% 
#!
  
#*Interactive DICOM image transmission and telediagnosis over the European ATM network.
#@Emanuele Neri,Jean-Philippe Thiran,Davide Caramella,Claudio Petri,Carlo Bartolozzi,Bruno Piscaglia,Benoit M. Macq,Thierry Duprez,Guy Cosnard,Baudouin Maldague,Johan De Pauw
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111342
#% 
#!
  
#*Motion compensated lossy-to-lossless compression of 4-D medical images using integer wavelet transforms.
#@Ashraf A. Kassim,Pingkun Yan,Wei Siong Lee,Kuntal Sengupta
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111343
#% 
#!
  
#*Deployable teleradiology: Bosnia and beyond.
#@Betty Ann Levine,Kevin Cleary,Seong K. Mun
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111344
#% 
#!
  
#*High-performance computing service over the Internet for intraoperative image processing.
#@Yasuhiro Kawasaki,Fumihiko Ino,Yasuharu Mizutani,Noriyuki Fujimoto,Toshihiko Sasama,Yoshinobu Sato,Nobuhiko Sugano,Shinichi Tamura,Kenichi Hagihara
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111345
#% 
#!
  
#*A multiparameter wearable physiologic monitoring system for space and terrestrial applications.
#@Carsten W. Mundt,Kevin N. Montgomery,U. E. Udoh,V. N. Barker,G. C. Thonier,A. M. Tellier,R. D. Ricks,R. Bruce Darling,Y. D. Cagle,N. A. Cabrol,S. J. Ruoss,J. L. Swain,J. W. Hines,Gregory T. A. Kovacs
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111346
#% 
#!
  
#*Architecture of a mediator for a bioinformatics database federation.
#@Graham J. L. Kemp,Nicos Angelopoulos,Peter M. D. Gray
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111347
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#!
  
#*Wavelet image compression - the quadtree coding approach.
#@Adrian Munteanu,Jan Cornelis,Geert Van Der Auwera,Paul Cristea
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111348
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#!
  
#*Fast Maximum Intensity Projections of Large Medical Data Sets by Exploiting Hierarchical Memory Architectures.
#@Gundolf Kiefer,Helko Lehmann,Jürgen Weese
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*DNA ploidy and cell cycle distribution of breast cancer aspirate cells measured by image cytometry and analyzed by artificial neural networks for their prognostic significance.
#@Raouf N. Gorgui-Naguib,Harsa Amylia Mat Sakim,M. S. Lakshmi,V. Wadehra,T. W. J. Lennard,J. Bhatavdekar,G. V. Sherbet
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Programmable ultrasound imaging using multimedia technologies: a next-generation ultrasound machine.
#@Yongmin Kim,J. H. Kim,Chris Basoglu,T. C. Winter
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111351
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#!
  
#*Virtual endoscopic visualization of the colon by shape-scale signatures.
#@Janne Näppi,Hans Frimmel,Hiroyuki Yoshida
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*Wavelet-Based Low-Delay ECG Compression Algorithm for Continuous ECG Transmission.
#@B. S. Kim,Sun Kook Yoo,M. H. Lee
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111353
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#!
  
#*Design and implementation of a novel compression method in a tele-ultrasound system.
#@Xiaojuan Li,Guangshu Hu,Shangkai Gao
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111354
#% 
#!
  
#*A database for therapy evaluation in neurological disorders: application in epilepsy.
#@Mehmet Eylem Kirlangic,Jörg Holetschek,Christina Krause,Galina Ivanova
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111355
#% 
#!
  
#*A scalable mediator approach to process large biomedical 3-D images.
#@Konstantinos Liakos,Albert Burger,Richard A. Baldock
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111356
#% 
#!
  
#*Reconstruction of 3-D head geometry from digitized point sets: an evaluation study.
#@Juha Koikkalainen,Jyrki Lötjönen
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111357
#% 
#!
  
#*A neural classifier enabling high-throughput topological analysis of lymphocytes in tissue sections.
#@Tim W. Nattkemper,Helge Ritter,Walter Schubert
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111358
#% 
#!
  
#*Watermarking medical signals for telemedicine.
#@Xuan Kong,Rui Feng
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111359
#% 
#!
  
#*A Novel Evolutionary Drug Scheduling Model in Cancer Chemotherapy.
#@Y. Liang,K.-S. Leung,T. S. K. Mok
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111360
#% 
#!
  
#*A novel large-memory neural network as an aid in medical diagnosis applications.
#@Hubert Kordylewski,Daniel Graupe,Kai Liu
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111361
#% 
#!
  
#*The Emergency Department Triage of Community-Acquired Pneumonia Project Data and Documentation Systems: A Model for Multicenter Clinical Trials.
#@D. S. Obrosky,S. M. Edick,Michael J. Fine
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111362
#% 
#!
  
#*Guest Editorial Introduction to the Special Section on Pervasive Healthcare.
#@Ilkka Korhonen,Jakob E. Bardram
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111363
#% 
#!
  
#*DICOM structured report document type definition.
#@R. Noumeir
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111364
#% 
#!
  
#*A multiagent system enhancing home-care health services for chronic disease management.
#@Vassilis Koutkias,Ioanna Chouvarda,Nicos Maglaveras
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111365
#% 
#!
  
#*Chronic whiplash associated disorders and neck movement measurements: an instantaneous helical axis approach.
#@F. Ohberg,H. Grip,U. Wiklund,Y. Sterner,J. S. Karlsson,B. Gerdle
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111366
#% 
#!
  
#*Neurointensive care unit system for continuous electrophysiological monitoring with remote web-based review.
#@A. J. W. van der Kouwe,Richard C. Burgess
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111367
#% 
#!
  
#*Association Rule Discovery With the Train and Test Approach for Heart Disease Prediction.
#@Carlos Ordonez
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111368
#% 
#!
  
#*A global energy function for the alignment of serially acquired slices.
#@Stelios Krinidis,Christophoros Nikou,Ioannis Pitas
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111369
#% 
#!
  
#*A wearable health care system based on knitted integrated sensors.
#@Rita Paradiso,Giannicola Loriga,N. Taccini
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111370
#% 
#!
  
#*Autonomous decision-making: a data mining approach.
#@Andrew Kusiak,Jeffrey A. Kern,Kemp H. Kernstine,Bill T. L. Tseng
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111371
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#!
  
#*Interactive 3D registration of ultrasound and magnetic resonance images based on a magnetic position sensor.
#@N. Pagoulatos,W. S. Edwards,David R. Haynor,Yongmin Kim
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*The G-algorithm for extraction of robust decision rules children's postoperative intra-atrial arrhythmia case study.
#@Andrew Kusiak,Ian H. Law,Dick MacDonald II
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111373
#% 
#!
  
#*Telemedicine diffusion in a developing Country: The case of India (march 2004).
#@A. Pal,Victor Wacham A. Mbarika,Fay Cobb Payton,Pratim Datta,Scott McCoy
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111374
#% 
#!
  
#*SIVA: A Hybrid Knowledge-and-Model-Based Advisory System for Intensive Care Ventilators.
#@Hoi-Fei Kwok,Derek A. Linkens,Mahdi Mahfouf,Gary H. Mills
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111375
#% 
#!
  
#*Activity Classification Using Realistic Data From Wearable Sensors.
#@Juha Pärkkä,Miikka Ermes,Panu Korpipää,Jani Mäntyjärvi,Johannes Peltola,Ilkka Korhonen
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111376
#% 
#!
  
#*Biological data integration: wrapping data and tools.
#@Zoé Lacroix
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111377
#% 
#!
  
#*A novel emergency telemedicine system based on wireless communication technology-AMBULANCE.
#@Sotiris Pavlopoulos,E. Kyriacou,Alexandros Berler,Spiridon Dembeyiotis,Dimitrios Koutsouris
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111378
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#!
  
#*Using Generalized Additive Models for Construction of Nonlinear Classifiers in Computer-Aided Diagnosis Systems.
#@María J. Lado,Carmen Cadarso-Suárez,Javier Roca-Pardiñas,Pablo G. Tahoces
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111379
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#!
  
#*Designing and implementing the transition to a fully digital hospital.
#@S. A. Pavlopoulos,A. N. Delopoulos
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111380
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#!
  
#*Guest Editorial Special Issue on Emerging Health Telematics Applications in Europe.
#@I. Lakovidis,Constantinos S. Pattichis,Christos Schizas
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111381
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#!
  
#*Framework for Parsing, Visualizing and Scoring Tissue Microarray Images.
#@Andrew Rabinovich,S. Krajewski,M. Krajewska,A. Shabaik,Stephen M. Hewitt,Serge J. Belongie,J. C. Reed,Jeffrey H. Price
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111382
#% 
#!
  
#*Artificial Intelligence Techniques for Monitoring Dangerous Infections.
#@Evelina Lamma,Paola Mello,Anna Nanetti,Fabrizio Riguzzi,Sergio Storari,Gianfranco Valastro
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111383
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#!
  
#*Experience with PACS in an ATM/Ethernet switched network environment.
#@E. Pelikan,A. Ganser,E. Kotter,U. Schrader,U. Timmermann
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*A three-year follow-up of Finnish telemedicine programs.
#@Hannu Lamminen,V. Sernberg,Keijo Ruohonen,R. Roine
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111385
#% 
#!
  
#*Surgical Navigation by Autostereoscopic Image Overlay of Integral Videography.
#@Hongen Liao,Nobuhiko Hata,Susumu Nakajima,Makoto Iwahara,Ichiro Sakuma,Takeyoshi Dohi
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111386
#% 
#!
  
#*Editorial: information technology in biomedicine: maturational insights.
#@Swamy Laxminarayan
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111387
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#!
  
#*A computational skin model: fold and wrinkle formation.
#@Nadia Magnenat-Thalmann,Prem Kalra,Jean Luc Lévêque,Roland Bazin,Dominique Batisse,Bernard Querleux
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111388
#% 
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#*What Can You Publish In T-ITB?
#@Swamy Laxminarayan
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#cIEEE Transactions on Information Technology in Biomedicine
#index1111389
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#!
  
#*A unified multimedia database system to support telemedicine.
#@Chung-Chih Lin,Jeng-Ren Duann,Chien-Tsai Liu,Heng-Shuen Chen,Jenn-Lung Su,Jyh-Horng Chen
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111390
#% 
#!
  
#*Editorial Healthcare Information Technology: What Is On The Horizon?
#@Swamy Laxminarayan
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111391
#% 
#!
  
#*A wireless PDA-based physiological monitoring system for patient transport.
#@Yuan-Hsiang Lin,I-Chien Jan,Patrick Chow-In Ko,Yen-Yu Chen,Jau-Min Wong,Gwo-Jen Jan
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111392
#% 
#!
  
#*Extending ventilation duration estimations approach from adult to neonatal intensive care patients using artificial neural networks.
#@Yanling Tong,Monique Frize,Robin C. Walker
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111393
#% 
#!
  
#*Tracking of Left Ventricular Long Axis From Real-Time Three-Dimensional Echocardiography Using Optical Flow Techniques.
#@F. Veronesi,Cristiana Corsi,Enrico G. Caiani,Alessandro Sarti,Claudio Lamberti
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111394
#% 
#!
  
#*Telemedicine for evaluation of brain function by a metacomputer.
#@Yuko Mizuno-Matsumoto,Susumu Date,Yuji Tabuchi,Shinichi Tamura,Yoshinobu Sato,Reza Aghaeizadeh Zoroofi,Shinji Shimojo,Youki Kadobayashi,Haruyuki Tatsumi,Hiroki Nogawa,Kazuhiro Shinosaki,Masatoshi Takeda,Tsuyoshi Inouye,Hideo Miyahara
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111395
#% 
#!
  
#*Effects of JPEG2000 Data Compression on an Automated System for Detecting Clustered Microcalcifications in Digital Mammograms.
#@Monica Penedo,María J. Lado,Pablo G. Tahoces,Miguel Souto,Juan J. Vidal
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111396
#% 
#!
  
#*Multimodal and ubiquitous computing systems: supporting independent-living older users.
#@Mark Perry,Alan Dowdall,Lorna Lines,Kate S. Hone
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111397
#% 
#!
  
#*Using XML Technology for the Ontology-Based Semantic Integration of Life Science Databases.
#@Stephan Philippi,Jacob Köhler
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111398
#% 
#!
  
#*An Automated Method for Lumen and Media-Adventitia Border Detection in a Sequence of IVUS Frames.
#@M. E. Plissiti,Dimitrios I. Fotiadis,Lampros K. Michalis,G. E. Bozios
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111399
#% 
#!
  
#*A virtual-reality-based telerehabilitation system with force feedback.
#@Viorel G. Popescu,Grigore C. Burdea,Mourad Bouzit,Vincent R. Hentz
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111400
#% 
#!
  
#*Blind Source Separation for Ambulatory Sleep Recording.
#@Fabienne Porée,Amar Kachenoura,Hervé Gauvrit,Catherine Morvan,Guy Carrault,Lotfi Senhadji
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111401
#% 
#!
  
#*Fetal lung maturity analysis using ultrasound image features.
#@K. N. Bhanu Prakash,A. G. Ramakrishnan,S. Suresh,T. W. P. Chow
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111402
#% 
#!
  
#*Object-oriented modeling of patients in a medical federation.
#@Michael D. Proctor,Gregory S. Creech
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111403
#% 
#!
  
#*BlackSea TeleDiab: Diabetes computer system with communication technology for black sea region.
#@Simion S. Pruna,Richard Dixon,Nigel D. Harris
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111404
#% 
#!
  
#*AIM: attentionally based interaction model for the interpretation of vascular angiography.
#@Francis K. H. Quek,Cemil Kirbas,Fady T. Charbel
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111405
#% 
#!
  
#*An integrative and interactive framework for improving biomedical pattern discovery and visualization.
#@Haiying Wang,Francisco Azuaje,Norman D. Black
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111406
#% 
#!
  
#*Developing decision support for dialysis treatment of chronic kidney failure.
#@Srinivasa R. Raghavan,Vladimir Ladik,K. B. Meyer
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111407
#% 
#!
  
#*Artificial neural network medical decision support tool: predicting transfusion requirements of ER patients.
#@S. Walczak
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111408
#% 
#!
  
#*A Support Vector Machines Classifier to Assess the Severity of Idiopathic Scoliosis From Surface Topography.
#@Lino Ramirez,Nelson G. Durdle,V. James Raso,Doug L. Hill
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111409
#% 
#!
  
#*Virtual Reality in Posturography.
#@Timo Tossavainen,Esko Toppila,Ilmari Pyykkö,P. M. Forsman,Martti Juhola,Jonathan Starck
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111410
#% 
#!
  
#*Improvement of sensitivity of breast cancer diagnosis with adaptive neighborhood contrast enhancement of mammograms.
#@Rangaraj M. Rangayyan,Liang Shen,Yiping Shen,J. E. Leo Desautels,Heather Bryant,Timothy J. Terry,Natalka Horeczko,M. S. Rose
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111411
#% 
#!
  
#*Magnetic resonance image analysis by information theoretic criteria and stochastic site models.
#@Yue Wang,Tülay Adali,Jianhua Xuan,Zsolt Szabo
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111412
#% 
#!
  
#*Three-dimensional object-oriented modeling of the stomach for the purpose of microprocessor-controlled functional stimulation.
#@P. Z. Rashev,K. L. Bowes,Martin P. Mintchev
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111413
#% 
#!
  
#*Blind separation of slow waves and spikes from gastrointestinal myoelectrical recordings.
#@Zhishun Wang,J. D. Z. Chen
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111414
#% 
#!
  
#*Application of an object-oriented programming paradigm in three-dimensional computer modeling of mechanically active gastrointestinal tissues.
#@P. Z. Rashev,Martin P. Mintchev,K. L. Bowes
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111415
#% 
#!
  
#*A Java-Based Enterprise System Architecture for Implementing a Continuously Supported and Entirely Web-Based Exercise Solution.
#@Z. Wang,T. Kiryu
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111416
#% 
#!
  
#*Bluetooth telemedicine Processor for multichannel biomedical signal transmission via mobile cellular networks.
#@Mohd Fadlee A. Rasid,Bryan Woodward
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111417
#% 
#!
  
#*Iterative normalization of cDNA microarray data.
#@Yue Wang,Jianping Lu,Richard Lee,Zhiping Gu,Robert Clarke
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111418
#% 
#!
  
#*Web-based video for real-time monitoring of radiological procedures.
#@O. Ratib,M. Dahlbom,J. M. Zucek,K. Kong,M. McCoy,D. J. Valentino
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111419
#% 
#!
  
#*String matching techniques for high-level primitive formation in 2-d vascular imaging.
#@Christine Toumoulin,J. Brieva,J. J. Bellanger,Huazhong Shu
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111420
#% 
#!
  
#*Reconciling users' needs and formal requirements: issues in developing a reusable ontology for medicine.
#@Alan L. Rector,Pieter E. Zanstra,W. D. Solomon,Jeremy Rogers,Robert H. Baud,Werner Ceusters,A. M. W. Claassen,J. Kirby,Jean Marie Rodrigues,Angelo Rossi Mori,Egbert J. van der Haring,J. Wagner
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111421
#% 
#!
  
#*Model-Based Method for Improving the Accuracy and Repeatability of Estimating Vascular Bifurcations and Crossovers From Retinal Fundus Images.
#@Chia-Ling Tsai,Charles V. Stewart,Howard L. Tanenbaum,Badrinath Roysam
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111422
#% 
#!
  
#*NEWBET: telemedicine platform for burn patients.
#@Javier Reina-Tosina,Laura M. Roa,Manuel Rovayo
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111423
#% 
#!
  
#*Personal health information management system and its application in referral management.
#@Maisie Wang,Christopher Lau,Frederick A. Matsen III,Yongmin Kim
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111424
#% 
#!
  
#*Behavioral avoidance dynamics in the presence of a virtual spider.
#@Patrice Renaud,Stéphane Bouchard,Robert Proulx
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111425
#% 
#!
  
#*A VRML-based anatomical visualization tool for medical education.
#@Philip A. Warrick,W. Robert J. Funnell
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111426
#% 
#!
  
#*Extracting isovolumes from three-dimensional torso geometry using PROLOG.
#@J. A. Replogle,David J. Russomanno,Amy L. De Jongh,Frank J. Claydon
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111427
#% 
#!
  
#*Voxel-based 2-D/3-D registration of fluoroscopy images and CT scans for image-guided surgery.
#@Jürgen Weese,Graeme P. Penney,Paul Desmedt,Thorsten M. Buzug,Derek L. G. Hill,David J. Hawkes
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111428
#% 
#!
  
#*Virtual environments in neuroscience.
#@Giuseppe Riva
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111429
#% 
#!
  
#*ECG data compression using truncated singular value decomposition.
#@Jyh-Jong Wei,Chuang-Jan Chang,Nai-Kuan Chou,Gwo-Jen Jan
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111430
#% 
#!
  
#*Virtual-reality-based multidimensional therapy for the treatment of body image disturbances in binge eating disorders: a preliminary controlled study.
#@Giuseppe Riva,Monica Bacchetta,Margherita Baruffi,Enrico Molinari
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111431
#% 
#!
  
#*A knowledge-based system for patient image pre-fetching in heterogeneous database environments - modeling, design, and evaluation.
#@Chih-Ping Wei,Paul Jen-Hwa Hu,Olivia R. Liu Sheng
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111432
#% 
#!
  
#*Interaction and presence in the clinical relationship: virtual reality (VR) as communicative medium between patient and therapist.
#@Giuseppe Riva,Enrico Molinari,Francesco Vincelli
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111433
#% 
#!
  
#*Developing a regional healthcare information network.
#@M. Howard Williams,Gavin Venters,George Venters,David H. Marwick
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111434
#% 
#!
  
#*Guest editorial: introduction to the special issue on virtual reality environments in behavioral sciences.
#@Giuseppe Riva,Brenda K. Wiederhold
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111435
#% 
#!
  
#*An Evolutionary Approach for Gene Expression Patterns.
#@Huai-Kuang Tsai,Jinn-Moon Yang,Yuan-Fan Tsai,Cheng-Yan Kao
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111436
#% 
#!
  
#*Location-aware access to hospital information and services.
#@Marcela D. Rodríguez,Jesús Favela,Edgar A. Martínez,Miguel A. Muñoz
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111437
#% 
#!
  
#*The treatment of fear of flying: a controlled study of imaginal and virtual reality graded exposure therapy.
#@Brenda K. Wiederhold,Dong Pyo Jang,R. G. Gevirtz,Sun I. Kim,In-Young Kim,Mark D. Wiederhold
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111438
#% 
#!
  
#*Real-time classification of ECGs on a PDA.
#@Jimena Rodríguez,Alfredo Goñi,Arantza Illarramendi
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111439
#% 
#!
  
#*A systems approach to achieving CarerNet-an integrated and intelligent telecare system.
#@G. Williams,K. Doughty,D. A. Bradley
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111440
#% 
#!
  
#*Nonrigid image registration in shared-memory multiprocessor environments with application to brains, breasts, and bees.
#@Torsten Rohlfing,Calvin R. Maurer Jr.
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111441
#% 
#!
  
#*Workflow-enabled distributed component-based information architecture for digital medical imaging enterprises.
#@Stephen T. C. Wong,Donny Tjandra,Huili Wang,Weimin Shen
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111442
#% 
#!
  
#*Genetic algorithms for a robust 3-D MR-CT registration.
#@Jean-Michel Rouet,Jean-José Jacq,Christian Roux
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111443
#% 
#!
  
#*Development of electronic textiles to support networks, communications, and medical applications in future U.S. Military protective clothing systems.
#@C. A. Winterhalter,J. Teverovsky,P. Wilson,J. Slade,W. Horowitz,E. Tierney,V. Sharma
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111444
#% 
#!
  
#*A Support Method for the Contextual Interpretation of Biomechanical Data.
#@E. Roux,A.-P. Godillon-Maquinghen,P. Caulier,S. Bouilland,D. Bouttens
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111445
#% 
#!
  
#*Simultaneous estimation of physiological parameters and the input function - in vivo PET data.
#@Koon-Pong Wong,David Dagan Feng,Steven R. Meikle,Michael J. Fulham
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111446
#% 
#!
  
#*Evaluation of statistical association measures for the automatic signal generation in pharmacovigilance.
#@E. Roux,Frantz Thiessard,A. Fourrier,B. Begaud,P. Tubert-Bitter
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111447
#% 
#!
  
#*Design of a telemedicine system using a mobile telephone.
#@Bryan Woodward,Robert S. H. Istepanian,C. I. Richards
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111448
#% 
#!
  
#*Pain relief using smart technology: an overview of a new patient-controlled analgesia device.
#@H. Rudolph,J. S. Packer,J. F. Cade,B. Lee,P. Morley
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111449
#% 
#!
  
#*Cluster analysis of gene expression data based on self-splitting and merging competitive learning.
#@Shuanhu Wu,Alan Wee-Chung Liew,Hong Yan,Mengsu Yang
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111450
#% 
#!
  
#*CBIT - context-based image transmission.
#@M. N. Salous,David Pycock,G. S. Cruickshank
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111451
#% 
#!
  
#*CT-based software for 3-D localization and reconstruction in stepping source brachytherapy.
#@A. Tsalpatouros,Dimos Baltas,C. Kolotas,R. van der Laarse,D. Koutsouris,Nikolaos K. Uzunoglu,Nikolaos Zamboglou
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111452
#% 
#!
  
#*Airmed-cardio: a GSM and Internet services-based system for out-of-hospital follow-up of cardiac patients.
#@Carlos Hernández Salvador,M. Pascual Carrasco,M. A. González de Mingo,A. Muñoz Carrero,J. Márquez Montes,L. Sosa Martin,Miguel A. Cavero,I. Fernández Lozano,Jose Luis Monteagudo
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111453
#% 
#!
  
#*Efficient Migration of Complex Off-Line Computer Vision Software to Real-Time System Implementation on Generic Computer Hardware.
#@James Alexander Tyrrell,J. M. LaPre,Christopher D. Carothers,Badrinath Roysam,Charles V. Stewart
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111454
#% 
#!
  
#*Combining high-performance computing and networking for advanced 3-D cardiac imaging.
#@Maria Filomena Santarelli,Vincenzo Positano,Luigi Landini
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111455
#% 
#!
  
#*An implantable telemetry platform system for in vivo monitoring of physiological parameters.
#@Pietro Valdastri,Arianna Menciassi,Alberto Arena,Chiara Caccamo,Paolo Dario
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111456
#% 
#!
  
#*Real-time multimodal medical image processing: a dynamic volume-rendering application.
#@Maria Filomena Santarelli,Vincenzo Positano,Luigi Landini
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111457
#% 
#!
  
#*A novel algorithm for computer-assisted measurement of cervical length from transvaginal ultrasound images.
#@Min Wu,Robert F. Fraser II,Chang Wen Chen
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111458
#% 
#!
  
#*Simple Method for Estimation of Hemoglobin in Human Blood Using Color Analysis.
#@H. Ranganathan,N. Gunasekaran
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111459
#% 
#!
  
#*A family competition evolutionary algorithm for automated docking of flexible ligands to proteins.
#@Jinn-Moon Yang,Cheng-Yan Kao
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111460
#% 
#!
  
#*Robust region of interest coding for improved sign language telecommunication.
#@David M. Saxe,Richard A. Foulds
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111461
#% 
#!
  
#*Three-dimensional virtual-reality surgical planning and soft-tissue prediction for orthognathic surgery.
#@James Xia,Horace Ho-Shing Ip,Nabil Samman,Helena T. F. Wong,Jaime Gateno,Dongfeng Wang,Richie W. K. Yeung,Christy S. B. Kot,Henk Tideman
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111462
#% 
#!
  
#*Long-Term Telemonitoring of Mobility Trends of Elderly People Using SMS Messaging.
#@C. N. Scanaill,B. Ahearne,G. M. Lyons
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111463
#% 
#!
  
#*A smart-card-enabled privacy preserving E-prescription system.
#@Yanjiang Yang,Xiaoxi Han,Feng Bao,Robert H. Deng
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111464
#% 
#!
  
#*The combined technique for detection of artifacts in clinical electroencephalograms of sleeping newborns.
#@Vitaly Schetinin,Joachim Schult
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111465
#% 
#!
  
#*Hadamard-based image decomposition and compression.
#@Iren Valova,Yukio Kosugi
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111466
#% 
#!
  
#*Computer-aided detection of breast cancer nuclei.
#@Frank Schnorrenberg,Constantinos S. Pattichis,Kyriacos C. Kyriacou,Christos Schizas
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111467
#% 
#!
  
#*An open architecture patient monitoring system using standard technologies.
#@Péter Várady,Zoltán Benyó,B. Benyo
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111468
#% 
#!
  
#*Performance evaluation of sensing fabrics for monitoring physiological and biomechanical variables.
#@Enzo Pasquale Scilingo,A. Gemignani,Rita Paradiso,N. Taccini,B. Ghelarducci,Danilo De Rossi
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111469
#% 
#!
  
#*Unsupervised segmentation based on robust estimation and color active contour models.
#@Lin Yang,Peter Meer,David J. Foran
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111470
#% 
#!
  
#*Compensatory fuzzy neural networks-based intelligent detection of abnormal neonatal cerebral Doppler ultrasound waveforms.
#@Huseyin Seker,D. H. Evans,N. Aydin,E. Yazgan
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111471
#% 
#!
  
#*A wearable point-of-care system for home use that incorporates plug-and-play and wireless standards.
#@Jianchu Yao,R. Schmitz,S. Warren
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111472
#% 
#!
  
#*A fuzzy logic based-method for prognostic decision making in breast and prostate cancers.
#@Huseyin Seker,Michael O. Odetayo,Dobrila Petrovic,Raouf N. Gorgui-Naguib
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111473
#% 
#!
  
#*Three-dimensional modeling and visualization of the cochlea on the Internet.
#@Sun K. Yoo,Ge Wang,Jay T. Rubinstein,Margaret W. Skinner,Michael W. Vannier
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111474
#% 
#!
  
#*Recording of time-varying back-pain data: a wireless solution.
#@Tacha Serif,George Ghinea
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111475
#% 
#!
  
#*Guest editorial.
#@Gudrun Zahlmann
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111476
#% 
#!
  
#*Design, analysis, and implementation of a telemedicine remote consultation and diagnosis session playback using discrete event system specification.
#@P. J. Shah,Ralph Martinez,Bernard P. Zeigler
#t1997
#cIEEE Transactions on Information Technology in Biomedicine
#index1111477
#% 
#!
  
#*Real-time teleconsultation with high-resolution and large-volume medical images for collaborative healthcare.
#@Jianguo Zhang,Johannes N. Stahl,H. K. Huang,Xiaoqiang Zhou,Shieh-Liang Lou,K. S. Song
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111478
#% 
#!
  
#*Optimal scheduling of tracing computations for real-time vascular landmark extraction from retinal fundus images.
#@Hong Shen,Badrinath Roysam,Charles V. Stewart,James N. Turner,Howard L. Tanenbaum
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111479
#% 
#!
  
#*DBMap: a space-conscious data visualization and knowledge discovery framework for biomedical data warehouse.
#@Ming Zhang,Hong Zhang,Donny Tjandra,Stephen T. C. Wong
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111480
#% 
#!
  
#*MRI fuzzy segmentation of brain tissue using neighborhood attraction with neural-network optimization.
#@Shan Shen,W. Sandham,M. Granat,Annette Sterr
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111481
#% 
#!
  
#*A New Detection Algorithm (NDA) Based on Fuzzy Cellular Neural Networks for White Blood Cell Detection.
#@Shitong Wang,W. Min
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111482
#% 
#!
  
#*Novel Multistage Three-Dimensional Medical Image Segmentation: Methodology and Validation.
#@L. Gu,J. Xu,T. M. Peters
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111483
#% 
#!
  
#*Medical diagnosis with C4.5 rule preceded by artificial neural network ensemble.
#@Zhi-Hua Zhou,Yuan Jiang
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111484
#% 
#!
  
#*Health care informatics.
#@Keng Siau
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111485
#% 
#!
  
#*Techniques for development of safety-related software for surgical robots.
#@P. A. C. Varley
#t1999
#cIEEE Transactions on Information Technology in Biomedicine
#index1111486
#% 
#!
  
#*A single mediaprocessor-based programmable ultrasound system.
#@Siddhartha Sikdar,Ravi Managuli,Lixin Gong,Vijay Shamdasani,Tsuyoshi Mitake,Tetsuya Hayashi,Yongmin Kim
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111487
#% 
#!
  
#*Editorial - IEEE Transactions on Information Technology in Biomedicine (T-ITB).
#@Niilo Saranummi
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111488
#% 
#!
  
#*An architecture for the automatic acquisition of vital signs by clinical information systems.
#@Andrew J. Sims,A. Pay,B. G. Watson
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111489
#% 
#!
  
#*A robotic system for blood sampling.
#@Aleksandar Zivanovic,Brian L. Davies
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111490
#% 
#!
  
#*An evaluation of contrast enhancement techniques for mammographic breast masses.
#@Sameer Singh,Keir Bovis
#t2005
#cIEEE Transactions on Information Technology in Biomedicine
#index1111491
#% 
#!
  
#*Design and analysis of a content-based pathology image retrieval system.
#@Lei Zheng,A. W. Wetzel,John R. Gilbertson,Michael J. Becich
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111492
#% 
#!
  
#*Incorporating the Sense of Smell Into Patient and Haptic Surgical Simulators.
#@B. S. Spencer
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111493
#% 
#!
  
#*Automated segmentation of acetabulum and femoral head from 3-d CT images.
#@Reza Aghaeizadeh Zoroofi,Yoshinobu Sato,Toshihiko Sasama,Takashi Nishii,Nobuhiko Sugano,Kazuo Yonenobu,Hideki Yoshikawa,Takahiro Ochi,Shinichi Tamura
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111494
#% 
#!
  
#*Teleconferencing with dynamic medical images.
#@Johannes N. Stahl,Jianguo Zhang,Chris Zellner,Eugene V. Pomerantsev,Tony M. Chou,H. K. Huang
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111495
#% 
#!
  
#*Simulated generation of evoked potentials components using networks with distinct excitatory and inhibitory neurons.
#@Errikos M. Ventouras,Nikolaos K. Uzunoglu,D. Koutsouris,Charalabos C. Papageorgiou,Andreas D. Rabavilas,C. Stefanis
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111496
#% 
#!
  
#*Model-based processing scheme for quantitative 4-D cardiac MRI analysis.
#@George Stalidis,Nikolaos Maglaveras,Serafim N. Efstratiadis,Athanasios S. Dimitriadis,Costas Pappas
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111497
#% 
#!
  
#*A computer-aided diagnosis system for digital mammograms based on fuzzy-neural and feature extraction techniques.
#@Brijesh Verma,John Zakos
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111498
#% 
#!
  
#*Modeling tumor growth and irradiation response in vitro-a combination of high-performance computing and Web-based technologies including VRML visualization.
#@Georgios S. Stamatakos,Evangelia I. Zacharaki,Mersini Makropoulou,Nicolaos A. Mouravliansky,Andy Marsh,Konstantina S. Nikita,Nikolaos K. Uzunoglu
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111499
#% 
#!
  
#*PACS/information systems interoperability using Enterprise Communication Framework.
#@Yasser H. alSafadi,William P. Lord,Nicholas J. Mankovich
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111500
#% 
#!
  
#*Internet-based system for simulation-based medical planning for cardiovascular disease.
#@Brooke N. Steele,Mary T. Draney,Joy P. Ku,Charles A. Taylor
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111501
#% 
#!
  
#*Algorithmic Fusion of Gene Expression Profiling for Diffuse Large B-Cell Lymphoma Outcome Prediction.
#@Qiuming Zhu,Hongmei Cui,Kajia Cao,Wing C. Chan
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111502
#% 
#!
  
#*OILing the way to machine understandable bioinformatics resources.
#@Robert Stevens,Carole A. Goble,Ian Horrocks,Sean Bechhofer
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111503
#% 
#!
  
#*Telemedicine Experience for Chronic Care in COPD.
#@P. deToledo,S. Jimeanez,F. delPozo,J. Roca,A. Alonso,C. Hernandez
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111504
#% 
#!
  
#*Building a bioinformatics ontology using OIL.
#@Robert Stevens,Carole A. Goble,Ian Horrocks,Sean Bechhofer
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111505
#% 
#!
  
#*Finding Unusual Medical Time-Series Subsequences: Algorithms and Applications.
#@Eamonn J. Keogh,Jessica Lin,Ada Wai-Chee Fu,Helga Van Herle
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111506
#% 
#!
  
#*A knowledge-based boundary delineation system for contrast ventriculograms.
#@Lei Sui,Robert M. Haralick,Florence H. Sheehan
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111507
#% 
#!
  
#*Radio Frequency Ablation Registration, Segmentation, and Fusion Tool.
#@Evan S. McCreedy,Ruida Cheng,Paul F. Hemler,Anand Viswanathan,Brad J. Wood,Matthew J. McAuliffe
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111508
#% 
#!
  
#*White and black blood volumetric angiographic filtering: ellipsoidal scale-space approach.
#@Jasjit S. Suri,Kecheng Liu,Laura Reden,Swamy Laxminarayan
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111509
#% 
#!
  
#*Shape Statistics Variational Approach for the Outer Contour Segmentation of Left Ventricle MR Images.
#@Qiang Chen,Ze Ming Zhou,Ming Tang,Pheng-Ann Heng,De-Shen Xia
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111510
#% 
#!
  
#*A review on MR vascular image processing algorithms: acquisition and prefiltering: part I.
#@Jasjit S. Suri,Kecheng Liu,Laura Reden,Swamy Laxminarayan
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111511
#% 
#!
  
#*A Fuzzy Discrete Event System Approach to Determining Optimal HIV/AIDS Treatment Regimens.
#@Hao Ying,Feng Lin,R. D. MacArthur,J. A. Cohn,Daniel C. Barth-Jones,Hong Ye,L. R. Crane
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111512
#% 
#!
  
#*A review on MR vascular image processing: skeleton versus nonskeleton approaches: part II.
#@Jasjit S. Suri,Kecheng Liu,Laura Reden,Swamy Laxminarayan
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111513
#% 
#!
  
#*A New Way for Multidimensional Medical Data Management: Volume of Interest (VOI)-Based Retrieval of Medical Images With Visual and Functional Features.
#@J. Kim,W. Cai,D. Feng,H. Wu
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111514
#% 
#!
  
#*Shape recovery algorithms using level sets in 2-D/3-D medical imagery: a state-of-the-art review.
#@Jasjit S. Suri,Kecheng Liu,Sameer Singh,Swamy Laxminarayan,Xiaolan Zeng,Laura Reden
#t2002
#cIEEE Transactions on Information Technology in Biomedicine
#index1111515
#% 
#!
  
#*First-Pass Contrast-Enhanced Myocardial Perfusion MRI Using a Maximum Up-Slope Parametric Map.
#@C. Ruan,S. Yang,G. D. Clarke,M. R. Amurao,S. R. Partyka,Y. C. Bradley,K. Cusi
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111516
#% 
#!
  
#*Time and space results of dynamic texture feature extraction in MR and CT image analysis.
#@Andrew E. Svolos,Andrew Todd-Pokropek
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111517
#% 
#!
  
#*Adaptive AR and Neurofuzzy Approaches: Access to Cerebral Particle Signatures.
#@Denis Kouame,M. Biard,Jean-Marc Girault,Aurore Bleuzen
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111518
#% 
#!
  
#*An adaptive 3-D discrete cosine transform coder for medical image compression.
#@Shen-Chuan Tai,Yung-Gi Wu,Chang-Wei Lin
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111519
#% 
#!
  
#*Biological Data Warehousing System for Identifying Transcriptional Regulatory Sites From Gene Expressions of Microarray Data.
#@Ann-Ping Tsou,Yi-Ming Sun,C.-L. Liu,Hsien-Da Huang,Jorng-Tzong Horng,Meng-Feng Tsai,Baw-Jhiune Liu
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111520
#% 
#!
  
#*Telemedicine system using computed tomography van of high-speed telecommunication vehicle.
#@M. Takizawa,S. Sone,K. Hanamura,K. Asakura
#t2001
#cIEEE Transactions on Information Technology in Biomedicine
#index1111521
#% 
#!
  
#*On the Use of 2-D Coding Techniques for ECG Signals.
#@E. Alexandre,A. Pena,M. Sobreira
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111522
#% 
#!
  
#*Histological image retrieval based on semantic content analysis.
#@Lilian H. Y. Tang,Rudolf Hanka,Horace Ho-Shing Ip
#t2003
#cIEEE Transactions on Information Technology in Biomedicine
#index1111523
#% 
#!
  
#*Co-Occurrence Analysis for Discovery of Novel Breast Cancer Pathology Patterns.
#@Susan Maskery,Yonghong Zhang,Rick Jordan,Hai Hu,Jeffrey Hooke,Craig D. Shriver,Michael N. Liebman
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111524
#% 
#!
  
#*Construction of a regional telementoring network for endoscopic surgery in Japan.
#@E. Taniguchi,S. Ohashi
#t2000
#cIEEE Transactions on Information Technology in Biomedicine
#index1111525
#% 
#!
  
#*Cancer Risk Analysis in Families With Hereditary Nonpolyposis Colorectal Cancer.
#@Münevver Köküer,Raouf N. Gorgui-Naguib,Peter Jancovic,H. B. Younghusband,R. C. Green
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111526
#% 
#!
  
#*A dynamic clinical dental relational database.
#@D. Taylor,Raouf N. Gorgui-Naguib,S. Boulton
#t2004
#cIEEE Transactions on Information Technology in Biomedicine
#index1111527
#% 
#!
  
#*Mining Statistically Significant Associations for Exploratory Analysis of Human Sleep Data.
#@Parameshvyas Laxminarayan,Sergio A. Alvarez,Carolina Ruiz,Majaz Moonis
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111528
#% 
#!
  
#*Real-time separation of discontinuous adventitious sounds from vesicular sounds using a fuzzy rule-based filter.
#@Yannis A. Tolias,Leontios J. Hadjileontiadis,Stavros M. Panas
#t1998
#cIEEE Transactions on Information Technology in Biomedicine
#index1111529
#% 
#!
  
#*Model-Based Automated Extraction of Microtubules From Electron Tomography Volume.
#@M. Jiang,Q. Ji,B. F. McEwen
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111530
#% 
#!
  
#*High-Performance Medical Image Registration Using New Optimization Techniques.
#@Mark P. Wachowiak,Terry M. Peters
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111531
#% 
#!
  
#*Local Dimensionality Reduction and Supervised Learning Within Natural Clusters for Biomedical Data Analysis.
#@Mykola Pechenizkiy,Alexey Tsymbal,Seppo Puuronen
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111532
#% 
#!
  
#*Limits of Capacity for the Exchange of Information in the Human Nervous System.
#@E. Echeverri
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111533
#% 
#!
  
#*Novel Approach for Modeling Separation Forces Between Deformable Bodies.
#@M. Mahvash
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111534
#% 
#!
  
#*Image Registration Based on Lifting Process: An Application to Digital Subtraction Radiography.
#@George K. Matsopoulos,Nicolaos A. Mouravliansky,Pantelis Asvestas,Konstantinos K. Delibasis,K. Grondahl,H.-G. Grondahl
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111535
#% 
#!
  
#*A Model-Based Approach to the Analysis of Patterns of Length of Stay in Institutional Long-Term Care.
#@Haifeng Xie,Thierry J. Chaussalet,Peter H. Millard
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111536
#% 
#!
  
#*A 3-D Active Shape Model Driven by Fuzzy Inference: Application to Cardiac CT and MR.
#@Hans C. van Assen,Mikhail G. Danilouchkine,M. S. Dirksen,Johan H. C. Reiber,Boudewijn P. F. Lelieveldt
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111537
#% 
#!
  
#*MR Imaging and Osteoporosis: Fractal Lacunarity Analysis of Trabecular Bone.
#@Annamaria Zaia,Roberta Eleonori,Pierluigi Maponi,Roberto Rossi,Roberto Murri
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111538
#% 
#!
  
#*Guest Editorial Introduction to the Special Section on BioGrid: Biomedical Computations on the Grid.
#@Chun-Hsi Huang,Akihiko Konagaya,Vincenzo Lanza,Peter M. A. Sloot
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111539
#% 
#!
  
#*Robust Estimation of Bioaffinity Assay Fluorescence Signals.
#@Dimitris Glotsos,Jussi Tohka,J. Soukka,J. T. Soini,Ulla Ruotsalainen
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111540
#% 
#!
  
#*Region of Interest and Multiresolution for Volume Rendering.
#@Sébastien Piccand,Rita Noumeir,Eric Paquette
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111541
#% 
#!
  
#*Predicting High-Risk Preterm Birth Using Artificial Neural Networks.
#@Christina Catley,Monique Frize,Robin C. Walker,Dorina C. Petriu
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111542
#% 
#!
  
#*New Optical Sensor for Monitoring the Micropipette Motion.
#@A. F. Ergenc,N. Olgac
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111543
#% 
#!
  
#*Modeling the Health Care Costs of Geriatric Inpatients.
#@Barry Shaw,Adele H. Marshall
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111544
#% 
#!
  
#*A Jini-Based Solution for Electronic Prescriptions.
#@George Ghinea,Shervin Asgari,Arash Moradi,Tacha Serif
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111545
#% 
#!
  
#*Feature Subset Selection for Improving the Performance of False Positive Reduction in Lung Nodule CAD.
#@Lilla Böröczky,Luyin Zhao,K. P. Lee
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111546
#% 
#!
  
#*Diagnosing Old MI by Searching for a Linear Boundary in the Space of Principal Components.
#@Mark P. Donnelly,Chris D. Nugent,Dewar D. Finlay,N. F. Rooney,Norman D. Black
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111547
#% 
#!
  
#*Helicobacter Pylori-Related Gastric Histology Classification Using Support-Vector-Machine-Based Feature Selection.
#@Chun-Rong Huang,Pau-Choo Chung,Bor-Shyang Sheu,Hsiu-Jui Kuo,P. Mikulas
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111548
#% 
#!
  
#*Multiple Image Watermarking Applied to Health Information Management.
#@Aggeliki Giakoumaki,Sotiris Pavlopoulos,Dimitris Koutsouris
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111549
#% 
#!
  
#*Parameter Estimation in Stochastic Mammogram Model by Heuristic Optimization Techniques.
#@S. Easter Selvan,C. Cecil Xavier,Nico Karssemeijer,Jean Sequeira,R. A. Cherian,B. Y. Dhala
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111550
#% 
#!
  
#*MobileMed: A PDA-Based Mobile Clinical Information System.
#@J. Choi,S. Yoo,H. Park,J. Chun
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111551
#% 
#!
  
#*Segmentation of VOI From Multidimensional Dynamic PET Images by Integrating Spatial and Temporal Features.
#@J. Kim,W. Cai,D. Feng,S. Eberl
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111552
#% 
#!
  
#*Combining Algorithms in Automatic Detection of QRS Complexes in ECG Signals.
#@C. Meyer,J. F. Gavela,M. Harris
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111553
#% 
#!
  
#*A Hybrid Computational Grid Architecture for Comparative Genomics.
#@A. Singh,Chen Chen,Weiguo Liu,W. Mitchell,Bertil Schmidt
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111554
#% 
#!
  
#*RTWPMS: A Real-Time Wireless Physiological Monitoring System.
#@Bor-Shyh Lin,Nai-Kuan Chou,Fok-Ching Chong,S.-J. Chen
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111555
#% 
#!
  
#*Wireless Health Care Service System for Elderly With Dementia.
#@C.-C. Lin,M.-J. Chiu,C.-C. Hsiao,R.-G. Lee,Y.-S. Tsai
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111556
#% 
#!
  
#*Automated Structure Extraction and XML Conversion of Life Science Database Flat Files.
#@Stephan Philippi,Jacob Köhler
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111557
#% 
#!
  
#*Novel Round-Robin Tabu Search Algorithm for Prostate Cancer Classification and Diagnosis Using Multispectral Imagery.
#@Muhammad Atif Tahir,Ahmed Bouridane
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111558
#% 
#!
  
#*Application of Simulated Annealing to the Biclustering of Gene Expression Data.
#@Kenneth Bryan,Padraig Cunningham,Nadia Bolshakova
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111559
#% 
#!
  
#*Knowledge-Driven Multidimensional Indexing Structure for Biomedical Media Database Retrieval.
#@Grant J. Scott,Chi-Ren Shyu
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111560
#% 
#!
  
#*Web-PACS for Multicenter Clinical Trials.
#@Juan Antonio Hernández Tamames,César J. Acuña,Valeria de Castro,Esperanza Marcos,Marcos López Sanz,Norberto Malpica
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111561
#% 
#!
  
#*Behavioral Patterns of Older Adults in Assisted Living.
#@Gilles Virone,Majd Alwan,Siddharth Dalal,Steven W. Kell,Beverely Turner,John A. Stankovic,Robin A. Felder
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111562
#% 
#!
  
#*A Sorting System for Hierarchical Grading of Diabetic Fundus Images: A Preliminary Study.
#@Gary G. Yen,Wen-Fung Leong
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111563
#% 
#!
  
#*Detecting Reduced Bone Mineral Density From Dental Radiographs Using Statistical Shape Models.
#@D. P. Allen,Jim Graham,Damian J. J. Farnell,Elizabeth J. Harrison,Reinhilde Jacobs,Kety Nicopolou-Karayianni,Christina Lindh,Paul F. van der Stelt,Keith Horner,Hugh Devlin
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111564
#% 
#!
  
#*Improving Pattern Discovery and Visualization of SAGE Data Through Poisson-Based Self-Adaptive Neural Networks.
#@Huiru Zheng,Haiying Wang,Francisco Azuaje
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111565
#% 
#!
  
#*An Adaptive Error Modeling Scheme for the Lossless Compression of EEG Signals.
#@Natarajan Sriraam,C. Eswaran
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111566
#% 
#!
  
#*Azimuthal Registration of Image Sequences Affected by Nonuniform Rotation Distortion.
#@G. van Soest,Johan G. Bosch,Anton F. W. van der Steen
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111567
#% 
#!
  
#*Automated Diagnosis of Coronary Artery Disease Based on Data Mining and Fuzzy Modeling.
#@Markos G. Tsipouras,Themis P. Exarchos,Dimitrios I. Fotiadis,A. P. Kotsia,K. V. Vakalis,K. K. Naka,Lampros K. Michalis
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111568
#% 
#!
  
#*Mobile Diary for Wellness Management - Results on Usage and Usability in Two User Studies.
#@Elina M. Mattila,Juha Pärkkä,Marion Hermersdorf,Jussi Kaasinen,J. Vainio,K. Samposalo,Juho Merilahti,Juha Kolari,M. Kulju,Raimo Lappalainen,Ilkka Korhonen
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111569
#% 
#!
  
#*A Cellular Neural Network Methodology for Deformable Object Simulation.
#@Yongmin Zhong,Bijan Shirinzadeh,Gürsel Alici,Julian Smith
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111570
#% 
#!
  
#*A Methodology for Reliability Analysis in Health Networks.
#@Stergiani Spyrou,Panagiotis D. Bamidis,Nicos Maglaveras,George Pangalos,Costas Pappas
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111571
#% 
#!
  
#*Computational Prediction Models for Early Detection of Risk of Cardiovascular Events Using Mass Spectrometry Data.
#@Tuan D. Pham,Honghui Wang,Xiaobo Zhou,Dominik Beck,Miriam Brandl,Gerard Hoehn,Joseph Azok,Marie-Luise Brennan,Stanley L. Hazen,King Li,Stephen T. C. Wong
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111572
#% 
#!
  
#*Combining Wavelet Analysis and Bayesian Networks for the Classification of Auditory Brainstem Response.
#@Rui Zhang,Gerry McAllister,Bryan W. Scotney,Sally I. McClean,Glen Houston
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111573
#% 
#!
  
#*Corrections to "DOORS to the Semantic Web and Grid With a PORTAL for Biomedical Computing".
#@Carl Taswell
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111574
#% 
#!
  
#*Emergency Readmission Criterion: A Technique for Determining the Emergency Readmission Time Window.
#@Eren Demir,Thierry J. Chaussalet,Haifeng Xie,Peter H. Millard
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111575
#% 
#!
  
#*Medical Image Segmentation Using Minimal Path Deformable Models With Implicit Shape Priors.
#@Pingkun Yan,Ashraf A. Kassim
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111576
#% 
#!
  
#*Database to Dynamically Aid Probe Design for Virus Identification.
#@Feng-Mao Lin,Hsien-Da Huang,Y.-C. Chang,Ann-Ping Tsou,P.-L. Chan,L.-C. Wu,Meng-Feng Tsai,Jorng-Tzong Horng
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111577
#% 
#!
  
#*The INCA System: A Further Step Towards a Telemedical Artificial Pancreas.
#@Enrique J. Gómez,M. Elena Hernando,Thomas Vering,Mercedes Rigla Cros,Oliver J. Bott,Gema García-Sáez,Dietrich Peter Pretschner,Eulalia Brugués,Oliver Schnell,Caroline Patte,Joachim Bergmann,Ralf Dudde,Alberto de Leiva
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111578
#% 
#!
  
#*DICOM Image Communication in Globus-Based Medical Grids.
#@Michal Vossberg,Thomas Tolxdorff,Dagmar Krefting
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111579
#% 
#!
  
#*An Inverse Method for Imaging the Local Elasticity of Atherosclerotic Coronary Plaques.
#@Radj A. Baldewsing,Mikhail G. Danilouchkine,Frits Mastik,Johannes A. Schaar,Patrick W. Serruys,Anton F. W. van der Steen
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111580
#% 
#!
  
#*A Cryptographic Key Management Solution for HIPAA Privacy/Security Regulations.
#@Wei-Bin Lee,Chien-Ding Lee
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111581
#% 
#!
  
#*EEG Transient Event Detection and Classification Using Association Rules.
#@Themis P. Exarchos,Alexandros T. Tzallas,Dimitrios I. Fotiadis,S. Konitsiotis,S. Giannopoulos
#t2006
#cIEEE Transactions on Information Technology in Biomedicine
#index1111582
#% 
#!
  
#*ELB-Q: A New Method for Improving the Robustness in DNA Microarray Image Quantification.
#@Marc Q. Ma,Kai Zhang,Hui-Yun Wang,Frank Y. Shih
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111583
#% 
#!
  
#*Delivering a Lifelong Integrated Electronic Health Record Based on a Service Oriented Architecture.
#@Dimitrios G. Katehakis,Stelios Sfakianakis,G. Kavlentakis,D. N. Anthoulakis,Manolis Tsiknakis
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111584
#% 
#!
  
#*Segmentation and Classification of Dot and Non-Dot-Like Fluorescence in situ Hybridization Signals for Automated Detection of Cytogenetic Abnormalities.
#@Boaz Lerner,Lev Koushnir,Josepha Yeshaya
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111585
#% 
#!
  
#*Correction to "Hybrid Retinal Image Registration".
#@Thitiporn Chanwimaluang,Guoliang Fan,Stephen R. Fransen
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111586
#% 
#!
  
#*DICOM Image Secure Communications With Internet Protocols IPv6 and IPv4.
#@Jianguo Zhang,Fenghai Yu,Jianyong Sun,Yuanyuan Yang,Chenwen Liang
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111587
#% 
#!
  
#*A Framework for Medical Image Retrieval Using Machine Learning and Statistical Similarity Matching Techniques With Relevance Feedback.
#@Md. Mahmudur Rahman,Prabir Bhattacharya,Bipin C. Desai
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111588
#% 
#!
  
#*Knowledge-Based Data Analysis: First Step Toward the Creation of Clinical Prediction Rules Using a New Typicality Measure.
#@Mila Kwiatkowska,M. Stella Atkins,Najib T. Ayas,C. Frank Ryan
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111589
#% 
#!
  
#*A Computational Framework for Approximating Boundary Surfaces in 3-D Biomedical Images.
#@L. Wang,Jing Bai,P. He,Pheng-Ann Heng,X. Yang
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111590
#% 
#!
  
#*Addressing the Future of Clinical Information Systems-Web-Based Multilayer Visualization.
#@Chueh-Loo Poh,Richard Kitney,Rasu B. K. Shrestha
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111591
#% 
#!
  
#*Medical Informatics and Bioinformatics: A Bibliometric Study.
#@Jean-Yves Bansard,Dietrich Rebholz-Schuhmann,Graham Cameron,Dominic Clark,Erik M. van Mulligen,Francesco Beltrame,Eva del Hoyo-Barbolla,Fernando Martín-Sánchez,Luciano Milanesi,Ioannis G. Tollis,Johan van der Lei,Jean-Louis Coatrieux
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111592
#% 
#!
  
#*An Automated Methodology for Fetal Heart Rate Extraction From the Abdominal Electrocardiogram.
#@E. C. Karvounis,Markos G. Tsipouras,Dimitrios I. Fotiadis,K. K. Naka
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111593
#% 
#!
  
#*Morphological Granulometric Features of Nucleus in Automatic Bone Marrow White Blood Cell Classification.
#@Nipon Theera-Umpon,Sompong Dhompongsa
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111594
#% 
#!
  
#*An Interactive Framework for Personalized Computer-Assisted Neurorehabilitation.
#@Xin Feng,Jack M. Winters
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111595
#% 
#!
  
#*Enhancing IHE XDS for Federated Clinical Affinity Domain Support.
#@Asuman Dogac,Gokce Laleci,Thomas Aden,Marco Eichelberg
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111596
#% 
#!
  
#*Pervasive Access to Images and Data-The Use of Computing Grids and Mobile/Wireless Devices Across Healthcare Enterprises.
#@Hanna Pohjonen,Peeter Ross,Johan G. Blickman,Richard Kamman
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111597
#% 
#!
  
#*Optimal Search-Based Gene Subset Selection for Gene Array Cancer Classification.
#@Jiexun Li,Hua Su,Hsinchun Chen,Bernard W. Futscher
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111598
#% 
#!
  
#*Guest Editorial Introduction to the Special Issue on Biomedical Informatics: Research and Applications.
#@Victor Maojo,Casimir A. Kulikowski,Fernando Martín-Sánchez
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111599
#% 
#!
  
#*SAKURA-Viewer: Intelligent Order History Viewer Based on Two-Viewpoint Architecture.
#@Shuichi Toyoda,Noboru Niki,Hiromu Nishitani
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111600
#% 
#!
  
#*Three-Dimensional Touch Interface for Medical Education.
#@Bundith Panchaphongsaphak,Rainer Burgkart,Robert Riener
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111601
#% 
#!
  
#*Communication of Medical Images, Text, and Messages in Inter-Enterprise Systems: A Case Study in Norway.
#@Ilangko Balasingham,H. Ihlen,Wolfgang Leister,P. Roe,Eigil Samset
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111602
#% 
#!
  
#*Web-Based Electronic Data Collection System to Support Electrochemotherapy Clinical Trial.
#@Ivan Pavlovic,Damijan Miklavcic
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111603
#% 
#!
  
#*Optimal Coding of Vectorcardiographic Sequences Using Spatial Prediction.
#@P. Augustyniak
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111604
#% 
#!
  
#*Nonlinear Support Vector Machine Visualization for Risk Factor Analysis Using Nomograms and Localized Radial Basis Function Kernels.
#@Baek Hwan Cho,Hwanjo Yu,Jong Shill Lee,Young Joon Chee,In-Young Kim,Sun I. Kim
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111605
#% 
#!
  
#*A Field Theoretical Approach to Medical Natural Language Processing.
#@Ricky K. Taira,Vijayaraghavan Bashyam,Hooshang Kangarloo
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111606
#% 
#!
  
#*Gait Analysis Using a Shoe-Integrated Wireless Sensor System.
#@Stacy J. Morris Bamberg,Ari Y. Benbasat,Donna M. Scarborough,David E. Krebs,Joseph A. Paradiso
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111607
#% 
#!
  
#*A Novel Method of Language Modeling for Automatic Captioning in TC Video Teleconferencing.
#@Xiaojia Zhang,Yunxin Zhao,Laura Schopp
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111608
#% 
#!
  
#*A Probabilistic Peptide Machine for Predicting Hepatitis C Virus Protease Cleavage Sites.
#@Zheng Rong Yang
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111609
#% 
#!
  
#*TimeLine: Visualizing Integrated Patient Records.
#@Alex A. T. Bui,Denise R. Aberle,Hooshang Kangarloo
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111610
#% 
#!
  
#*Management and Analysis of Genomic Functional and Phenotypic Controlled Annotations to Support Biomedical Investigation and Practice.
#@Marco Masseroli
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111611
#% 
#!
  
#*Distributed Augmented Reality With 3-D Lung Dynamics-A Planning Tool Concept.
#@Felix G. Hamza-Lup,Anand P. Santhanam,Celina Imielinska,Sanford L. Meeks,Jannick P. Rolland
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111612
#% 
#!
  
#*A Wavelet Approach for the Identification of Axonal Synaptic Varicosities from Microscope Images.
#@Yu-Ping Wang,H. Ragib,Chi-Ming Huang
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111613
#% 
#!
  
#*Modeling of Entorhinal Cortex and Simulation of Epileptic Activity: Insights Into the Role of Inhibition-Related Parameters.
#@Etienne Labyt,Paul Frogerais,Laura Uva,Jean-Jacques Bellanger,Fabrice Wendling
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111614
#% 
#!
  
#*Guest Editorial Introduction to the Special Section on Image Management in the Healthcare Enterprise.
#@Seong K. Mun,Fred Prior,Davide Caramella,Osman Ratib
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111615
#% 
#!
  
#*Integrated Support for Medical Image Analysis Methods: From Development to Clinical Application.
#@Sílvia Delgado Olabarriaga,Jeroen G. Snel,Charl P. Botha,Robert G. Belleman
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111616
#% 
#!
  
#*Multiclass Support Vector Machines for EEG-Signals Classification.
#@Inan Güler,Elif Derya Übeyli
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111617
#% 
#!
  
#*BAAQ: An Infrastructure for Application Integration and Knowledge Discovery in Bioinformatics.
#@Xiujun Gong,Kensuke Nakamura,Hua Yu,Kei Yura,Nobuhiro Go
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111618
#% 
#!
  
#*A Radio Frequency Identification Implanted in a Tooth can Communicate With the Outside World.
#@H. Ishihata,Takeshi Tomoe,Kotaroh Takei,T. Hirano,Kazuo Yoshida,Shigeru Shoji,Hidetoshi Shimauchi,Hiroshi Horiuchi
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111619
#% 
#!
  
#*Bi-Fi: An Embedded Sensor/System Architecture for Remote Biological Monitoring.
#@Shahin Farshchi,Alex Pesterev,P. H. Nuyujukian,I. Mody,Jack W. Judy
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111620
#% 
#!
  
#*Automatic Segmentation of High-Throughput RNAi Fluorescent Cellular Images.
#@Pingkun Yan,Xiaobo Zhou,Mubarak Shah,Stephen T. C. Wong
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111621
#% 
#!
  
#*Medical Image Categorization and Retrieval for PACS Using the GMM-KL Framework.
#@Hayit Greenspan,Adi Pinhas
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111622
#% 
#!
  
#*Bagging Linear Sparse Bayesian Learning Models for Variable Selection in Cancer Diagnosis.
#@Chuan Lu,Andy Devos,Johan A. K. Suykens,Carles Arús,Sabine Van Huffel
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111623
#% 
#!
  
#*Approximate Entropy-Based Epileptic EEG Detection Using Artificial Neural Networks.
#@V. Srinivasan,C. Eswaran,Natarajan Sriraam
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111624
#% 
#!
  
#*State-Based Modeling and Object Extraction From Echocardiogram Video.
#@Aditi Roy,Shamik Sural,Jayanta Mukherjee,Arun K. Majumdar
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111625
#% 
#!
  
#*An Efficient Motion-Resistant Method for Wearable Pulse Oximeter.
#@Yong-Sheng Yan,Yuan-Ting Zhang
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111626
#% 
#!
  
#*Exploring Microbial Genome Sequences to Identify Protein Families on the Grid.
#@Yudong Sun,Anil Wipat,Matthew R. Pocock,P. A. Lee,K. Flanagan,J. T. Worthington
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111627
#% 
#!
  
#*Co-clustering: A Versatile Tool for Data Analysis in Biomedical Informatics.
#@Sungroh Yoon,Luca Benini,Giovanni De Micheli
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111628
#% 
#!
  
#*Building a Normative Decision Support System for Clinical and Operational Risk Management in Hemodialysis.
#@Chiara Cornalba,Roberto Bellazzi,Riccardo Bellazzi
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111629
#% 
#!
  
#*A Semantic Grid Infrastructure Enabling Integrated Access and Analysis of Multilevel Biomedical Data in Support of Postgenomic Clinical Trials on Cancer.
#@Manolis Tsiknakis,Mathias Brochhausen,J. Nabrzyski,J. Pucacki,Stelios Sfakianakis,George Potamias,C. Desmedt,Dimitris Kafetzopoulos
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111630
#% 
#!
  
#*Automatic Method to Compare the Lanes in Gel Electrophoresis Images.
#@Chih-Yang Lin,Yu-Tai Ching,Yun-Liang Yang
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111631
#% 
#!
  
#*A Cryptographic Approach to Securely Share and Query Genomic Sequences.
#@Murat Kantarcioglu,Wei Jiang,Ying Liu,Bradley Malin
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111632
#% 
#!
  
#*Incremental Diagnosis Method for Intelligent Wearable Sensor Systems.
#@Winston H. Wu,Alex A. T. Bui,Maxim A. Batalin,Duo Liu,William J. Kaiser
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111633
#% 
#!
  
#*Modeling Drug Mechanism Knowledge Using Evidence and Truth Maintenance.
#@Richard D. Boyce,Carol Collins,John Horn,Ira Kalet
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111634
#% 
#!
  
#*openSourcePACS: An Extensible Infrastructure for Medical Image Management.
#@Alex A. T. Bui,Craig A. Morioka,John D. N. Dionisio,David B. Johnson,Usha Sinha,Siamak Ardekani,Ricky K. Taira,Denise R. Aberle,Suzie El-Saden,Hooshang Kangarloo
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111635
#% 
#!
  
#*XML-Based Data Model and Architecture for a Knowledge-Based Grid-Enabled Problem-Solving Environment for High-Throughput Biological Imaging.
#@Wamiq Manzoor Ahmed,Dominik Lenz,Jia Liu,J. Paul Robinson,Arif Ghafoor
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111636
#% 
#!
  
#*Psychiatric Consultation Record Retrieval Using Scenario-Based Representation and Multilevel Mixture Model.
#@Liang-Chih Yu,Chung-Hsien Wu,Fong-Lin Jang
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111637
#% 
#!
  
#*A Note From the Incoming Editor-in-Chief.
#@Yuan-Ting Zhang
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111638
#% 
#!
  
#*On the Classification of Prostate Carcinoma With Methods from Spatial Statistics.
#@Claudia Wittke,Johannes Mayer,Franz Schweiggert
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111639
#% 
#!
  
#*An Integrated System for the Segmentation of Atherosclerotic Carotid Plaque.
#@Philipos C. Loizou,Constantinos S. Pattichis,Marios Pantziaris,Andrew Nicolaides
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111640
#% 
#!
  
#*Collaborative Work During Interventional Radiological Procedures Based on a Multicast Satellite-Terrestrial Network.
#@Lefteris Gortzis,H. Papadopoulos,Theo A. Roelofs,Stefan Rakowsky,Dimitris Karnabatidis,Dimitris Siablis,C. Makropoulos,George Nikiforidis,Georgi Graschew
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111641
#% 
#!
  
#*Multiple Abdominal Organ Segmentation: An Atlas-Based Fuzzy Connectedness Approach.
#@Yongxin Zhou,Jing Bai
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111642
#% 
#!
  
#*Variable Background Active Contour Model for Computer-Aided Delineation of Nodules in Thyroid Ultrasound Images.
#@Dimitrios E. Maroulis,Michalis A. Savelonas,Dimitrios K. Iakovidis,Stavros A. Karkanis,Nikolaos Dimitropoulos
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111643
#% 
#!
  
#*Confident Interpretation of Bayesian Decision Tree Ensembles for Clinical Applications.
#@Vitaly Schetinin,Jonathan E. Fieldsend,Derek Partridge,Timothy J. Coats,Wojtek J. Krzanowski,Richard M. Everson,Trevor C. Bailey,Adolfo Hernandez
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111644
#% 
#!
  
#*Visualization of Back Pain Data - A 3-D Solution.
#@George Ghinea,Simon Kent,Andrew O. Frank,Gurudain Singh Chana
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111645
#% 
#!
  
#*Analysis of Telemedicine Diffusion: The Case of China.
#@Yajiong Xue,Huigang Liang
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111646
#% 
#!
  
#*Analysis of Dynamic Susceptibility Contrast MRI Time Series Based on Unsupervised Clustering Methods.
#@Anke Meyer-Bäse,Oliver Lange,Axel Wismüller,Monica K. Hurdal
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111647
#% 
#!
  
#*Privacy-Preserving Telecardiology Sensor Networks: Toward a Low-Cost Portable Wireless Hardware/Software Codesign.
#@Fei Hu,Meng Jiang,Mark Wagner,De-Cun Dong
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111648
#% 
#!
  
#*Spatial Modeling and Classification of Corneal Shape.
#@Keith Marsolo,Michael D. Twa,Mark Bullimore,Srinivasan Parthasarathy
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111649
#% 
#!
  
#*Design of a Large Network for Radiological Image Data.
#@Marisa Ruffolo,Mark S. Daskin,Alan V. Sahakian,Randall A. Berry
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111650
#% 
#!
  
#*Performance Analysis of a Medical Record Exchanges Model.
#@Ean-Wen Huang,Der-Ming Liou
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111651
#% 
#!
  
#*Understanding PACS Development in Context: The Case of China.
#@Yajiong Xue,Huigang Liang
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111652
#% 
#!
  
#*A Contextual Medical Image Viewer.
#@Ramon Alfredo Moreno,Sérgio Shiguemi Furuie
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111653
#% 
#!
  
#*Simulating 3-D Lung Dynamics Using a Programmable Graphics Processing Unit.
#@Anand P. Santhanam,Felix G. Hamza-Lup,Jannick P. Rolland
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111654
#% 
#!
  
#*A Mobile Care System With Alert Mechanism.
#@Ren-Guey Lee,Kuei-Chien Chen,Chun-Chieh Hsiao,Chwan-Lu Tseng
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111655
#% 
#!
  
#*Large-Scale Biomedical Image Analysis in Grid Environments.
#@Vijay S. Kumar,Benjamin Rutt,Tahsin M. Kurç,Ümit V. Çatalyürek,T. C. Pan,Sunny Chow,Stephan Lamont,Maryann E. Martone,Joel H. Saltz
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111656
#% 
#!
  
#*A New System for Computer-Aided Preoperative Planning and Intraoperative Navigation During Corrective Jaw Surgery.
#@Jonas Chapuis,Alexander Schramm,Ion Pappas,Wock Hallermann,Katja S. Schwenzer-Zimmerer,Frank Langlotz,Marco Caversaccio
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111657
#% 
#!
  
#*A Generic Framework for Internet-Based Interactive Applications of High-Resolution 3-D Medical Image Data.
#@Danzhou Liu,Kien A. Hua,Kiminobu Sugaya
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111658
#% 
#!
  
#*Shape-Driven Segmentation of the Arterial Wall in Intravascular Ultrasound Images.
#@Gozde B. Unal,S. Bucher,Stephane G. Carlier,Gregory G. Slabaugh,Tong Fang,K. Tanaka
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111659
#% 
#!
  
#*Mining Three-Dimensional Anthropometric Body Surface Scanning Data for Hypertension Detection.
#@Chaochang Chiu,Kuang-Hung Hsu,Pei-Lun Hsu,Chi-I Hsu,Po-Chi Lee,Wen-Ko Chiou,Thu-Hua Liu,Yi-Chou Chuang,Chorng-Jer Hwang
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111660
#% 
#!
  
#*Image-Based Gating of Intravascular Ultrasound Pullback Sequences.
#@Sean M. O'Malley,J. F. Granada,Stephane G. Carlier,Morteza Naghavi,Ioannis A. Kakadiaris
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111661
#% 
#!
  
#*Detection of Daily Activities and Sports With Wearable Sensors in Controlled and Uncontrolled Conditions.
#@Miikka Ermes,Juha Pärkkä,Jani Mäntyjärvi,Ilkka Korhonen
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111662
#% 
#!
  
#*User-Centered Evaluation of Arizona BioPathway: An Information Extraction, Integration, and Visualization System.
#@Karin D. Quiñones,Hua Su,Byron Marshall,Shauna Eggers,Hsinchun Chen
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111663
#% 
#!
  
#*A Novel Breast Tissue Density Classification Methodology.
#@Arnau Oliver,Jordi Freixenet,Robert Marti,Josep Pont,Elsa Pérez,Erika R. E. Denton,Reyer Zwiggelaar
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111664
#% 
#!
  
#*Modeling Real-Time 3-D Lung Deformations for Medical Visualization.
#@Anand P. Santhanam,Celina Imielinska,Paul Davenport,Patrick Kupelian,Jannick P. Rolland
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111665
#% 
#!
  
#*Managing Medical Images and Clinical Information: InCor's Experience.
#@Sérgio Shiguemi Furuie,Marina S. Rebelo,Ramon Alfredo Moreno,Marcelo Santos,Nivaldo Bertozzo,G. H. M. B. Motta,Fabio A. Pires,Marco Antonio A. Gutierrez
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111666
#% 
#!
  
#*Architecture and Performance of a Grid-Enabled Lookup-Based Biomedical Optimization Application: Light Scattering Spectroscopy.
#@Renato J. O. Figueiredo,Vadim Backman,Yang Liu,Jithendar Paladugula
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111667
#% 
#!
  
#*X-PAT: A Multiplatform Patient Referral Data Management System for Small Healthcare Institution Requirements.
#@Marco Masseroli,Mario Marchente
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111668
#% 
#!
  
#*3-D Pain Drawings--Mobile Data Collection Using a PDA.
#@George Ghinea,Fotis Spyridonis,Tacha Serif,Andrew O. Frank
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111669
#% 
#!
  
#*A Spine X-Ray Image Retrieval System Using Partial Shape Matching.
#@Xiaoqian Xu,Dah-Jye Lee,Sameer Antani,L. Rodney Long
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111670
#% 
#!
  
#*Automated Retinal Image Analysis Over the Internet.
#@Chia-Ling Tsai,Benjamin Madore,Matthew J. Leotta,Michal Sofka,Gehua Yang,Anna Majerovics,Howard L. Tanenbaum,Charles V. Stewart,Badrinath Roysam
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111671
#% 
#!
  
#*System for Infectious Disease Information Sharing and Analysis: Design and Evaluation.
#@Paul Jen-Hwa Hu,Daniel Dajun Zeng,Hsinchun Chen,Cathy Larson,Wei Chang,Chunju Tseng,Jian Ma
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111672
#% 
#!
  
#*Registration of 3-D CT and 2-D Flat Images of Mouse via Affine Transformation.
#@Zheng Xia,Xishi Huang,Xiaobo Zhou,Youxian Sun,Vasilis Ntziachristos,Stephen T. C. Wong
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111673
#% 
#!
  
#*A Novel Surface Registration Algorithm With Biomedical Modeling Applications.
#@Heng Huang,Li Shen,Rong Zhang,Fillia Makedon,Andrew J. Saykin,Justin D. Pearlman
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111674
#% 
#!
  
#*Real-Time Volume Rendering Visualization of Dual-Modality PET/CT Images With Interactive Fuzzy Thresholding Segmentation.
#@Jinman Kim,Weidong Cai,Stefan Eberl,David Dagan Feng
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111675
#% 
#!
  
#*Fuzzy Receiver Operating Characteristic Curve: An Option to Evaluate Diagnostic Tests.
#@Maria J. P. Castanho,Laécio Carvalho de Barros,Akebo Yamakami,Laércio Luis Vendite
#t2007
#cIEEE Transactions on Information Technology in Biomedicine
#index1111676
#% 
#!
  
#*Guest Editorial Introduction to the Special Section on Computer Vision for Intravascular and Intracardiac Imaging.
#@Gozde B. Unal,Gregory G. Slabaugh,Ioannis A. Kakadiaris,Allen Tannenbaum
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111677
#% 
#!
  
#*DOORS to the Semantic Web and Grid With a PORTAL for Biomedical Computing.
#@Carl Taswell
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111678
#% 
#!
  
#*3-D Segmentation Algorithm of Small Lung Nodules in Spiral CT Images.
#@Stefano Diciotti,Giulia Picozzi,Massimo Falchini,Mario Mascalchi,N. Villari,Guido Valli
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111679
#% 
#!
  
#*Computer-Supported Angiogenesis Quantification Using Image Analysis and Statistical Averaging.
#@Charalampos N. Doukas,Ilias Maglogiannis,Aristotle A. Chatziioannou
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111680
#% 
#!
  
#*Efficient Lossless Compression of 4-D Medical Images Based on the Advanced Video Coding Scheme.
#@Victor Sanchez,Panos Nasiopoulos,Rafeef Abugharbieh
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111681
#% 
#!
  
#*Mining Unexpected Temporal Associations: Applications in Detecting Adverse Drug Reactions.
#@Huidong Jin,Jie Chen,Hongxing He,Graham J. Williams,Chris Kelman,Christine M. O'Keefe
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111682
#% 
#!
  
#*Improved Detection of the Central Reflex in Retinal Vessels Using a Generalized Dual-Gaussian Model and Robust Hypothesis Testing.
#@Harihar Narasimha-Iyer,Vijay Mahadevan,J. M. Beach,Badrinath Roysam
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111683
#% 
#!
  
#*WS/PIDS: Standard Interoperable PIDS in Web Services Environments.
#@Eugen Vasilescu,Mihai Dorobantu,Sergio Govoni,S. Padh,Seong Ki Mun
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111684
#% 
#!
  
#*The Model Repository of the Models of Infectious Disease Agent Study.
#@Philip C. Cooley,D. Roberts,V. D. Bakalov,S. Bikmal,S. Cantor,T. Costandine,L. Ganapathi,B. J. Golla,G. Grubbs,C. Hollingsworth,S. Li,Y. Qin,William Savage,D. Simoni,E. Solano,D. Wagener
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111685
#% 
#!
  
#*Performance Evaluation of Neural Network and Linear Predictors for Near-Lossless Compression of EEG Signals.
#@Natarajan Sriraam,C. Eswaran
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111686
#% 
#!
  
#*Characterization of Atherosclerotic Plaques and Mural Thrombi With Intravascular Ultrasound Elastography: A Potential Method Evaluated in an Aortic Rabbit Model and a Human Coronary Artery.
#@Roch L. Maurice,J. Fromageau,M.-H. Cardinal,M. Doyley,E. de Muinck,J. Robb,Guy Cloutier
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111687
#% 
#!
  
#*IT Applications for Pervasive, Personal, and Personalized Health.
#@Niilo Saranummi
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111688
#% 
#!
  
#*Miniature in vivo Robots for Remote and Harsh Environments.
#@Mark Rentschler,Stephen R. Platt,Kyle R. Berg,Jason Dumpert,Dmitry Oleynikov,Shane Farritor
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111689
#% 
#!
  
#*Context-Sensitive Correlation of Implicitly Related Data: An Episode Creation Methodology.
#@Roderick Y. Son,Ricky K. Taira,Hooshang Kangarloo,Alfonso F. Cardenas
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111690
#% 
#!
  
#*A Novel and Efficient Technique for Identification and Classification of GPCRs.
#@Ravi Gupta,Ankush Mittal,Kuldip Singh
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111691
#% 
#!
  
#*Accuracy in Prediction of Catheter Rotation in IVUS With Feature-Based Optical Flow - A Phantom Study.
#@Mikhail G. Danilouchkine,Frits Mastik,Anton F. W. van der Steen
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111692
#% 
#!
  
#*Detection of Infarct Lesions From Single MRI Modality Using Inconsistency Between Voxel Intensity and Spatial Location - A 3-D Automatic Approach.
#@Shan Shen,André J. Szameitat,Annette Sterr
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111693
#% 
#!
  
#*Shape Registration by Optimally Coding Shapes.
#@Yifeng Jiang,Jun Xie,Hung-Tat Tsui
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111694
#% 
#!
  
#*A Healthcare Integration System for Disease Assessment and Safety Monitoring of Dementia Patients.
#@Chung-Chih Lin,Ping-Yeh Lin,Po-Kuan Lu,Guan-Yu Hsieh,Wei-Lun Lee,Ren-Guey Lee
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111695
#% 
#!
  
#*Grid-Added Value to Address Malaria.
#@Vincent Breton,Nicolas Jacq,Vinod Kasam,Martin Hofmann-Apitius
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111696
#% 
#!
  
#*Semantics-Enabled Service Discovery Framework in the SIMDAT Pharma Grid.
#@Changtao Qu,Falk Zimmermann,Kai Kumpf,Richard Kamuzinzi,Valérie Ledent,Robert Herzog
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111697
#% 
#!
  
#*A Robust 3-D IVUS Transducer Tracking Using Single-Plane Cineangiography.
#@Melissa Jourdain,Jean Meunier,Jean Sequeira,Jean-Marc Boi,Jean-Claude Tardif
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111698
#% 
#!
  
#*DefibViz: A Visualization Tool for the Assessment of Electrode Parameters on Transthoracic Defibrillation Thresholds.
#@David J. Russomanno,A. L. de Jongh Curry,Galina S. Atanasova,Leslie C. Hunt,J. Caleb Goodwin
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111699
#% 
#!
  
#*Challenges in Atherosclerotic Plaque Characterization With Intravascular Ultrasound (IVUS): From Data Collection to Classification.
#@Amin Katouzian,S. Sathyanarayana,Babak Baseri,Elisa E. Konofagou,Stephane G. Carlier
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111700
#% 
#!
  
#*Unifying Statistical Classification and Geodesic Active Regions for Segmentation of Cardiac MRI.
#@Jenny Folkesson,Eigil Samset,R. Y. Kwong,Carl-Fredrik Westin
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111701
#% 
#!
  
#*Classification of Electrocardiogram Signals With Support Vector Machines and Particle Swarm Optimization.
#@Farid Melgani,Yakoub Bazi
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111702
#% 
#!
  
#*A Framework for the Design of a Novel Haptic-Based Medical Training Simulator.
#@Amir M. Tahmasebi,Keyvan Hashtrudi-Zaad,D. Thompson,Purang Abolmaesumi
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111703
#% 
#!
  
#*A National Human Neuroimaging Collaboratory Enabled by the Biomedical Informatics Research Network (BIRN).
#@David B. Keator,J. S. Grethe,D. Marcus,B. Ozyurt,S. Gadde,S. Murphy,S. Pieper,D. Greve,R. Notestine,H. J. Bockholt,Philip M. Papadopoulos
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111704
#% 
#!
  
#*Interoperability of GADU in Using Heterogeneous Grid Resources for Bioinformatics Applications.
#@Dinanath Sulakhe,Alex Rodriguez,Michael Wilde,Ian T. Foster,Natalia Maltsev
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111705
#% 
#!
  
#*Radial Basis Function Neural Networks Classification for the Recognition of Idiopathic Pulmonary Fibrosis in Microscopic Images.
#@Ilias Maglogiannis,Haralambos Sarimveis,Chris T. Kiranoudis,Aristotelis A. Chatziioannou,N. Oikonomou,V. Aidinis
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111706
#% 
#!
  
#*Optimal Electrocardiographic Lead Systems: Practical Scenarios in Smart Clothing and Wearable Health Systems.
#@Dewar D. Finlay,Chris D. Nugent,Mark P. Donnelly,Paul J. McCullagh,Norman D. Black
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111707
#% 
#!
  
#*A Grid Computing-Based Approach for the Acceleration of Simulations in Cardiology.
#@José M. Alonso,Jose Maria Ferrero,Vicente Hernández,Germán Moltó,Javier Saiz,Beatriz Trénor
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1111708
#% 
#!
  
#*Evaluation of a Telemedicine-Based Service for the Follow-Up and Monitoring of Patients Treated With Oral Anticoagulant Therapy.
#@Carlos Hernández Salvador,Antonio Ruiz-Sanchez,M. A. González de Mingo,Montserrat Carmona Rodriguez,M. Pascual Carrasco,Pilar G. Sagredo,Juan A. Fragua,Fernando Caballero-Martinez,Fernando Garcia-Lopez,J. Márquez Montes,Jose Luis Monteagudo
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281874
#% 
#!
  
#*Using the Timing Information of Heartbeats as an Entity Identifier to Secure Body Sensor Network.
#@Shu-Di Bao,Carmen C. Y. Poon,Yuan-Ting Zhang,Lian-Feng Shen
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281875
#% 
#!
  
#*Detections of Arterial Wall in Sonographic Artery Images Using Dual Dynamic Programming.
#@Da-Chuan Cheng,Xiaoyi Jiang
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281876
#% 
#!
  
#*Identifying Discriminative Amino Acids Within the Hemagglutinin of Human Influenza A H5N1 Virus Using a Decision Tree.
#@Li-Ching Wu,Jorng-Tzong Horng,Hsien-Da Huang,Wei-Long Chen
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281877
#% 
#!
  
#*Haptic Interface of the KAIST-Ewha Colonoscopy Simulator II.
#@Hyun Soo Woo,Woo Seok Kim,Woojin Ahn,Doo Yong Lee,Sun Young Yi
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281878
#% 
#!
  
#*Breast Cancer Diagnosis: Analyzing Texture of Tissue Surrounding Microcalcifications.
#@Anna Karahaliou,Ioannis Boniatis,Spyros Skiadopoulos,Filippos Sakellaropoulos,Nikolaos Arikidis,Eleni A. Likaki,George Panayiotakis,Lena Costaridou
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281879
#% 
#!
  
#*A Novel Software Platform for Medical Image Processing and Analyzing.
#@Jie Tian,Jian Xue,Yakang Dai,Jian Chen,Jian Zheng
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281880
#% 
#!
  
#*Discovering Novel Causal Patterns From Biomedical Natural-Language Texts Using Bayesian Nets.
#@J. Atkinson,A. Rivas
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281881
#% 
#!
  
#*Image Diffusion Using Saliency Bilateral Filter.
#@Jun Xie,Pheng-Ann Heng,Mubarak Shah
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281882
#% 
#!
  
#*Detecting Differences Between Contrast Groups.
#@Shichao Zhang
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281883
#% 
#!
  
#*Toward Reflective Management of Emergency Department Chief Complaint Information.
#@Samuli Niiranen,Jari Yli-Hietanen,Larry A. Nathanson
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281884
#% 
#!
  
#*Artificial Odor Discrimination System Using Electronic Nose and Neural Networks for the Identification of Urinary Tract Infection.
#@Vassilis S. Kodogiannis,John N. Lygouras,A. Tarczynski,H. S. Chowdrey
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281885
#% 
#!
  
#*Impact of Patient-General Practitioner Short-Messages-Based Interaction on the Control of Hypertension in a Follow-up Service for Low-to-Medium Risk Hypertensive Patients: A Randomized Controlled Trial.
#@M. Pascual Carrasco,Carlos Hernández Salvador,Pilar G. Sagredo,J. Márquez Montes,M. A. González de Mingo,Juan A. Fragua,M. C. Rodriguez,L. M. Garcia-Olmos,Fernando Garcia-Lopez,A. M. Carrero,Jose Luis Monteagudo
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281886
#% 
#!
  
#*Recursive Fuzzy Granulation for Gene Subsets Extraction and Cancer Classification.
#@Yuchun Tang,Yan-Qing Zhang,Zhen Huang,Xiaohua Hu,Yichuan Zhao
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281887
#% 
#!
  
#*Collaborative Business Process Support in eHealth: Integrating IHE Profiles Through ebXML Business Process Specification Language.
#@Asuman Dogac,Yildiray Kabak,Tuncay Namli,A. Okcan
#t2008
#cIEEE Transactions on Information Technology in Biomedicine
#index1281888
#% 
#!
  
#*Facial Recognition From Volume-Rendered Magnetic Resonance Imaging Data.
#@Fred W. Prior,Barry S. Brunsden,Charles Hildebolt,Tracy S. Nolan,Michael Pringle,S. Neil Vaishnavi,Linda J. Larson-Prior
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869976
#%833250
#!
  
#*Assessment of Linear and Nonlinear Synchronization Measures for Analyzing EEG in a Mild Epileptic Paradigm.
#@Vangelis Sakkalis,Ciprian Doru Giurcaneanu,Petros Xanthopoulos,Michalis E. Zervakis,Vassilis Tsiaras,Yinghua Yang,Eleni Karakonstantaki,Sifis Micheloyannis
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870023
#%1108394
#!
  
#*An Extended Markov Blanket Approach to Proteomic Biomarker Detection From High-Resolution Mass Spectrometry Data.
#@Jung Hun Oh,Prem Gurnani,John Schorge,Kevin P. Rosenblatt,Jean X. Gao
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869973
#%2360
#%438404
#%438311
#%762644
#%764718
#%765629
#%766621
#%839546
#%1009234
#%1009507
#%1042459
#%1044900
#!
  
#*Reversible Watermarking for Knowledge Digest Embedding and Reliability Control in Medical Images.
#@Gouenou Coatrieux,Clara Le Guillou,Jean-Michel Cauvin,Christian Roux
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870083
#%746412
#%775450
#%881370
#!
  
#*Predicting the Outcome of Patients With Subarachnoid Hemorrhage Using Machine Learning Techniques.
#@Paula de Toledo,Pablo M. Rios,Agapito Ledezma,Araceli Sanchís,Jose F. Alen,Alfonso Lagares
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870012
#%140
#%2360
#%334834
#%760152
#%767050
#%875872
#%959593
#%1009807
#!
  
#*3-D Retinal Curvature Estimation.
#@Thitiporn Chanwimaluang,Guoliang Fan,Gary G. Yen,Stephen R. Fransen
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869987
#%127697
#%128112
#%293199
#%907614
#%907581
#%908433
#%908325
#%1031241
#%1031243
#%1032734
#%1033346
#%1033330
#%3134589
#!
  
#*Guest Editorial: Introduction to the Special Section on Biomedical Informatics.
#@Demitris Fotiadis,Constantinos S. Pattichis
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870030
#% 
#!
  
#*A Data-Mining Approach for Investigating Social and Economic Geographical Dynamics of beta-Thalassemia's Spread.
#@Altug Akay,Andrei Dragomir,Ahmet Yardimci,Duran Canatan,Akif Yesilipek,Brian W. Pogue
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870047
#% 
#!
  
#*Computer-Assisted Venous Thrombosis Volume Quantification.
#@John Puentes,Mounir Dhibi,Luc Bressollette,Bruno Guias,Basel Solaiman
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870025
#%650852
#%1031389
#%1032708
#%1045306
#%1119099
#!
  
#*Computing Consistency Between Microarray Data and Known Gene Regulation Relationships.
#@Dong-Guk Shin,Saira Ali Kazmi,Baikang Pei,Yoo-Ah Kim,Jeffrey Maddox,Ravi Nori,Alan Wong,Winfried Krueger,David W. Rowe
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870061
#% 
#!
  
#*Segmentation of Complementary DNA Microarray Images by Wavelet-Based Markov Random Field Model.
#@Emmanouil Athanasiadis,Dionisis Cavouras,Dimitris Glotsos,Pantelis Georgiadis,Ioannis Kalatzis,George Nikiforidis
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870074
#%29434
#%763471
#%766891
#%1030967
#!
  
#*An Improved Level Set for Liver Segmentation and Perfusion Analysis in MRIs.
#@Gang Chen,Lixu Gu,Lijun Qian,Jianrong Xu
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870088
#%129491
#%1031176
#!
  
#*Fuzzy Scaling Analysis of a Mouse Mutant With Brain Morphological Changes.
#@Tuan D. Pham,Catharina C. Müller,Denis I. Crane
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870002
#%3006103
#!
  
#*A Novel Finite-Element-Based Algorithm for Fluorescence Molecular Tomography of Heterogeneous Media.
#@Daifa Wang,Xin Liu,Yanping Chen,Jing Bai
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870084
#% 
#!
  
#*Noninvasive Biosignal Detection Radar System Using Circular Polarization.
#@Jee-Hoon Lee,Jung Man Hwang,Dong Hyuk Choi,Seong-Ook Park
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869967
#% 
#!
  
#*Wireless Support to Poststroke Rehabilitation: MyHeart's Neurological Rehabilitation Concept.
#@Toni Giorgino,Paolo Tormene,Giorgio Maggioni,Caterina Pistarini,Silvana Quaglini
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870035
#%680824
#%760255
#%3006103
#%3345959
#!
  
#*Novel Lossless fMRI Image Compression Based on Motion Compensation and Customized Entropy Coding.
#@Victor Sanchez,Panos Nasiopoulos,Rafeef Abugharbieh
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870008
#%147216
#!
  
#*A Semantically Enriched Clinical Guideline Model Enabling Deployment in Heterogeneous Healthcare Environments.
#@Gokce Laleci,Asuman Dogac
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870048
#%83545
#%583634
#%627813
#%673796
#%817487
#%959750
#%959751
#%959874
#%1064621
#%3349213
#!
  
#*Tumor Clustering Using Nonnegative Matrix Factorization With Gene Selection.
#@Chun-Hou Zheng,De-Shuang Huang,Lei Zhang,Xiangzhen Kong
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870070
#%595996
#%763795
#%764223
#%818366
#%984972
#%1009800
#%1023816
#%1026558
#%1042528
#%1087028
#!
  
#*Texture Analysis for Automatic Segmentation of Intervertebral Disks of Scoliotic Spines From MR Images.
#@Claudia Chevrefils,Farida Cheriet,Carl-Eric Aubin,Guy Grimard
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870005
#%1031939
#%1033267
#%1045594
#%1163943
#!
  
#*Fabric-Based Active Electrode Design and Fabrication for Health Monitoring Clothing.
#@Carey R. Merritt,H. Troy Nagle,Edward Grant
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869974
#% 
#!
  
#*A Lossless Compression Method for Medical Image Sequences Using JPEG-LS and Interframe Coding.
#@Shaou-Gang Miaou,Fu-Sheng Ke,Shu-Ching Chen
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870080
#%146996
#!
  
#*Computer-Aided Detection and Diagnosis of Breast Cancer With Mammography: Recent Advances.
#@Jinshan Tang,Rangaraj M. Rangayyan,Jun Jun Xu,Issam El-Naqa,Yongyi Yang
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870020
#%940101
#%1038931
#%3345318
#!
  
#*Guest Editorial Introduction to the Special Section on Computational Intelligence in Medical Systems.
#@Constantinos S. Pattichis,Christos Schizas,Marios S. Pattichis,Evangelia Micheli-Tzanakou,Efthyvoulos C. Kyriakou,Dimitris I. Fotiadis
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870038
#% 
#!
  
#*Wearable and Mobile System to Manage Remotely Heart Failure.
#@Elena Villalba,Dario Salvi,Manuel Ottaviano,Ignacio Peinado,María Teresa Arredondo,A. Akay
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870073
#%1071719
#%3000821
#%3002399
#!
  
#*IBE-Lite: A Lightweight Identity-Based Cryptography for Body Sensor Networks.
#@Chiu Chiang Tan,Haodong Wang,Sheng Zhong,Qun Li
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869984
#%151915
#%298174
#%507012
#%680792
#%711454
#!
  
#*Virtual Microscopy and Grid-Enabled Decision Support for Large-Scale Analysis of Imaged Pathology Specimens.
#@Lin Yang,Wenjin Chen,Peter Meer,Gratian Salaru,Lauri A. Goodell,Viktors Berstis,David J. Foran
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870069
#%128390
#%169394
#%907669
#%907731
#%1009356
#%1040503
#%3006861
#%3669117
#!
  
#*Characterization of On-Body Communication Channel and Energy Efficient Topology Design for Wireless Body Area Networks.
#@Elisabeth Reusens,Wout Joseph,Benoît Latré,Bart Braem,Günter Vermeeren,Emmeric Tanghe,Luc Martens,Ingrid Moerman,Chris Blondia
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870015
#%245313
#%506813
#%507022
#%665057
#%680783
#%784156
#!
  
#*Real-Time Activity Classification Using Ambient and Wearable Sensors.
#@Louis Atallah,Benny P. L. Lo,Raza Ali,Rachel C. King,Guang-Zhong Yang
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870044
#%257135
#%257143
#%293127
#%346550
#%453170
#%835284
#%835661
#%835659
#%985084
#%1113233
#%1179351
#%3253269
#!
  
#*Mining, Modeling, and Evaluation of Subnetworks From Large Biomolecular Networks and Its Comparison Study.
#@Xiaohua Hu,Michael K. Ng,Fang-Xiang Wu,Bahrad A. Sokhansanj
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869972
#%764047
#%765591
#%1151265
#!
  
#*PathMiner: A Web-Based Tool for Computer-Assisted Diagnostics in Pathology.
#@Lin Yang,Oncel Tuzel,Wenjin Chen,Peter Meer,Gratian Salaru,Lauri A. Goodell,David J. Foran
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869978
#%169394
#%293398
#%502559
#%907669
#%908416
#%982100
#%989400
#%1009356
#%1017364
#%1030445
#%1031260
#%1112135
#%3669117
#!
  
#*Computational Intelligence in Bioinformatics: SNP/Haplotype Data in Genetic Association Study for Common Diseases.
#@Arpad Kelemen,Athanasios V. Vasilakos,Yulan Liang
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870091
#%760467
#%762680
#%763220
#%763002
#%764776
#%765921
#%885085
#%1169018
#!
  
#*Energy-Efficient Low Duty Cycle MAC Protocol for Wireless Body Area Networks.
#@Stevan Jovica Marinkovic,Emanuel M. Popovici,Christian Spagnol,Stephen Faul,William P. Marnane
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870087
#%506813
#%537796
#%584529
#%802458
#!
  
#*WADA Service: An Extension of DICOM WADO Service.
#@George V. Koutelakis,Dimitrios K. Lymberopoulos
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870027
#%80595
#%832470
#!
  
#*Fast Rigid Registration of Vascular Structures in IVUS Sequences.
#@Carlo Gatta,Oriol Pujol,Oriol Rodriguez-Leor,Josepa Mauri,Petia Radeva
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870062
#%168924
#%1033771
#%3077288
#!
  
#*Two-Phase Chief Complaint Mapping to the UMLS Metathesaurus in Korean Electronic Medical Records.
#@Bo-Yeong Kang,Dae-Won Kim,Hong-Gee Kim
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870009
#%959541
#%959710
#!
  
#*Automatic Detection of Respiration Rate From Ambulatory Single-Lead ECG.
#@Justin Boyle,Niranjan P. Bidargaddi,Antti Sarela,Mohan Karunanithi
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870051
#% 
#!
  
#*Use of Kernel Functions in Artificial Immune Systems for the Nonlinear Classification Problems.
#@Seral Özsen,Salih Günes,Sadik Kara,Fatma Latifoglu
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869966
#%791129
#%959878
#%1163941
#!
  
#*Real-Time Analysis of Physiological Data to Support Medical Applications.
#@Daniele Apiletti,Elena Baralis,Giulia Bruno,Tania Cerquitelli
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869975
#%2333
#%8297
#%80858
#%3138537
#!
  
#*A Context-Aware Fitness Guide System for Exercise Optimization in U-Health.
#@Jung-Eun Lim,O-Hoon Choi,Hong-Seok Na,Doo-Kwon Baik
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869997
#%569021
#%89190
#!
  
#*Monitoring Motor Fluctuations in Patients With Parkinson's Disease Using Wearable Sensors.
#@Shyamal Patel,Konrad Lorincz,Richard Hughes,Nancy Huggins,John Growdon,David Standaert,Metin Akay,Jennifer Dy,Matt Welsh,Paolo Bonato
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870033
#%680799
#!
  
#*Design and Implementation of a Distributed Fall Detection System - Personal Server.
#@Miguel A. Estudillo-Valderrama,Laura M. Roa,Javier Reina-Tosina,David Naranjo-Hernández
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870068
#%832470
#!
  
#*Enhancement of Multichannel Chromosome Classification Using a Region-Based Classifier and Vector Median Filtering.
#@Petros S. Karvelis,Dimitrios I. Fotiadis,Dimitrios G. Tsalikakis,Ioannis Georgiou
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870072
#%833869
#%834674
#%835133
#%1032534
#%1033267
#%1052850
#!
  
#*Multivariate Analysis of Full-Term Neonatal Polysomnographic Data.
#@Václav Gerla,Karel Paul,Lenka Lhotská,Vladimir Krajca
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870081
#%190356
#!
  
#*A Framework for Detecting Glaucomatous Progression in the Optic Nerve Head of an Eye Using Proper Orthogonal Decomposition.
#@Madhusudhanan Balasubramanian,Stanislav Zabic,Christopher Bowd,Hilary W. Thompson,Peter R. Wolenski,S. Sitharama Iyengar,Bijaya B. Karki,Linda M. Zangwill
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870045
#%908532
#%959572
#%1033312
#!
  
#*Estimating the Number of Clusters via System Evolution for Cluster Analysis of Gene Expression Data.
#@Kaijun Wang,Jie Zheng,Junying Zhang,Jiyang Dong
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870022
#%765032
#!
  
#*A Wearable Airbag to Prevent Fall Injuries.
#@Toshiyo Tamura,Takumi Yoshimura,Masaki Sekine,Mitsuo Uchida,Osamu Tanaka
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870000
#%348163
#!
  
#*A 3-D Collision Handling Algorithm for Surgery Simulation Based on Feedback Fuzzy Logic.
#@Verónica García-Pérez,Emma Muñoz-Moreno,Santiago Aja-Fernández,Carlos Alberola-López
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870090
#%238520
#%593127
#%593889
#%594215
#%786534
#%1133744
#%1134003
#%1143458
#%1163338
#%2939849
#%3055593
#!
  
#*Autoregressive-Model-Based Missing Value Estimation for DNA Microarray Time Series Data.
#@Miew Keen Choong,Maurice Charbit,Hong Yan
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870063
#%764474
#%767139
#!
  
#*Editorial Editorial Note on Health Informatics.
#@Yuan-Ting Zhang,Carmen C. Y. Poon,E. MacPherson
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869979
#% 
#!
  
#*Dimensionality Reduction Oriented Toward the Feature Visualization for Ischemia Detection.
#@Edilson Delgado-Trejos,Alexandre Perera-Lluna,Montserrat Vallverdú-Ferrer,Peré Caminal-Magrans,Germán Castellanos-Domínguez
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870086
#%473380
#%984942
#%1032730
#%3344981
#!
  
#*Development and Preliminary Validation of Heart Rate and Breathing Rate Detection Using a Passive, Ballistocardiography-Based Sleep Monitoring System.
#@David Mack,James T. Patrie,Paul M. Suratt,Robin A. Felder,Majd Alwan
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870014
#% 
#!
  
#*A Novel Cell Segmentation Method and Cell Phase Identification Using Markov Model.
#@Xiaobo Zhou,Fuhai Li,Jun Jun Yan,Stephen T. C. Wong
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869986
#%311573
#%833662
#%1033267
#!
  
#*Ventricular Intramyocardial Electrograms and Their Expected Potential for Cardiac Risk Surveillance, Telemonitoring, and Therapy Management.
#@Helmut Hutten
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870024
#%3520
#!
  
#*Blastocyst Microinjection Automation.
#@Leonardo S. Mattos,Edward Grant,Randy Thresher,Kimberly Kluckman
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869993
#%771378
#!
  
#*Photoplethysmogram Measurement Without Direct Skin-to-Sensor Contact Using an Adaptive Light Source Intensity Control.
#@Hyun Jae Baek,Gih Sung Chung,Ko Keun Kim,Jung Soo Kim,Kwang Suk Park
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869989
#% 
#!
  
#*Cardiac Motion Recovery via Active Trajectory Field Models.
#@Andrew D. Gilliam,Frederick H. Epstein,Scott T. Acton
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870064
#%1031172
#%1031412
#!
  
#*Short-Term Forecasting of Emergency Inpatient Flow.
#@Gad Abraham,Graham B. Byrnes,Christopher A. Bain
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870050
#%514876
#%984962
#!
  
#*Realization of a Universal Patient Identifier for Electronic Medical Records Through Biometric Technology.
#@D. C. Leonard,Alexander P. Pons,Shihab S. Asfour
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870057
#%140
#%597957
#%773103
#%894594
#%1009575
#%1112367
#!
  
#*Automated Scoring of Obstructive Sleep Apnea and Hypopnea Events Using Short-Term Electrocardiogram Recordings.
#@Ahsan H. Khandoker,Jayavardhana Gubbi,Marimuthu Palaniswami
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870043
#%389261
#%1026510
#%1026869
#%2870040
#!
  
#*Complementary DNA Microarray Image Processing Based on the Fuzzy Gaussian Mixture Model.
#@Emmanouil Athanasiadis,Dionisis Cavouras,Panagiota Spyridonos,Dimitris Glotsos,Ioannis Kalatzis,George Nikiforidis
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870003
#%29434
#%121051
#%763471
#%766891
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#!
  
#*Bandwidth Resource Management for Neural Signal Telemetry.
#@Lara Traver,Cristina Tarín,Narcís Cardona
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870053
#% 
#!
  
#*Wavelet-Based Compression With ROI Coding Support for Mobile Access to DICOM Images Over Heterogeneous Radio Networks.
#@Ilias Maglogiannis,Charalampos Doukas,George Kormentzas,Thomas Pliakas
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870017
#%369034
#%742081
#%959740
#%1017203
#!
  
#*Automatic Segmentation and Disentangling of Chromosomes in Q-Band Prometaphase Images.
#@Enrico Grisan,Enea Poletti,Alfredo Ruggeri
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869981
#%1017567
#%1030979
#%1042678
#%1045321
#!
  
#*A Computational-Intelligence-Based Approach for Detection of Exudates in Diabetic Retinopathy Images.
#@Alireza Osareh,Bita Shadgar,Richard Markham
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869995
#%348228
#%760533
#%1031449
#%1040325
#%1044323
#%3003051
#!
  
#*An Overview of Potential Factors for Effective Telemedicine Transfer to Sub-Saharan Africa.
#@Peter Meso,Victor Wacham A. Mbarika,Sanjay Prakash Sood
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870056
#%773313
#%775494
#%2999150
#!
  
#*Eigenvector Methods for Automated Detection of Electrocardiographic Changes in Partial Epileptic Patients.
#@Elif Derya Übeyli
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870042
#%1026118
#%1044151
#%1279742
#!
  
#*A Pattern Similarity Scheme for Medical Image Retrieval.
#@Dimitrios K. Iakovidis,Nikos Pelekis,Evangelos E. Kotsifakos,Ioannis Kopanakis,Haralampos Karanikas,Yannis Theodoridis
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870078
#%80764
#%334715
#%372952
#%500472
#%541513
#%644005
#%835401
#%894226
#%908294
#%959740
#%982100
#%1031260
#%1033295
#%1113335
#%3674392
#!
  
#*Detection of Tandem Repeats in DNA Sequences Based on Parametric Spectral Estimation.
#@Hongxia Zhou,Liping Du,Hong Yan
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869998
#%118601
#%559149
#%559066
#%762980
#%763464
#%764644
#%765842
#%767016
#%766925
#%962490
#%1059697
#%1089274
#%1150269
#%3106914
#%3106951
#%3107026
#%3109442
#!
  
#*Microvascular Flow Estimation by Contrast-Assisted Ultrasound B-Scan and Statistical Parametric Images.
#@Po-Hsiang Tsui,Chih-Kuang Yeh,Chien-Cheng Chang
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870001
#% 
#!
  
#*A Wearable ECG Acquisition System With Compact Planar-Fashionable Circuit Board-Based Shirt.
#@Jerald Yoo,Long Yan,Seulki Lee,Hyejung Kim,Hoi-Jun Yoo
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870052
#% 
#!
  
#*Microarray Gene Cluster Identification and Annotation Through Cluster Ensemble and EM-Based Informative Textual Summarization.
#@Xiaohua Hu,E. K. Park,Xiaodan Zhang
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869970
#%121252
#%302532
#%438679
#%558669
#%661983
#%832677
#%936644
#%937452
#%961908
#%985107
#%1009695
#!
  
#*A Surface Registration Method for Quantification of Intraoperative Brain Deformations in Image-Guided Neurosurgery.
#@Perrine Paul,Xavier Morandi,Pierre Jannin
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870036
#%497480
#%1031172
#%1045525
#!
  
#*Low-Power, Intelligent Sensor Hardware Interface for Medical Data Preprocessing.
#@Fei Hu,Shruti Lakdawala,Qi Hao,Meikang Qiu
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870016
#%775197
#%1140900
#!
  
#*A Modified Matched Filter With Double-Sided Thresholding for Screening Proliferative Diabetic Retinopathy.
#@Lei Zhang,Qin Li,Jane You,David Zhang
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870079
#%497693
#%1031918
#%1031975
#%1033058
#%3077397
#!
  
#*Mutual Information Preconditioning Improves Structure Learning of Bayesian Networks From Medical Databases.
#@Antonella Meloni,Andrea Ripoli,Vincenzo Positano,Luigi Landini
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869980
#%174959
#%632480
#%744627
#%1009354
#%1009404
#%1009524
#%1032147
#%3006704
#%3109444
#!
  
#*Relationship of Psychological and Physiological Variables in Long-Term Self-Monitored Data During Work Ability Rehabilitation Program.
#@Juha Pärkkä,Juho Merilahti,Elina M. Mattila,Esko Malm,Kari Antila,Martti T. Tuomisto,Ari Viljam Saarinen,Mark van Gils,Ilkka Korhonen
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869991
#%948534
#!
  
#*Active Contours Guided by Echogenicity and Texture for Delineation of Thyroid Nodules in Ultrasound Images.
#@Michalis A. Savelonas,Dimitrios K. Iakovidis,Ioannis Legakis,Dimitris Maroulis
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870039
#%311949
#%497441
#%755173
#%1032668
#%1163335
#!
  
#*Automatic Recognition of Gait Patterns Exhibiting Patellofemoral Pain Syndrome Using a Support Vector Machine Approach.
#@Daniel T. H. Lai,Pazit T. Levinger,Rezaul K. Begg,Wendy Lynne Gilleard,Marimuthu Palaniswami
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870026
#%984946
#!
  
#*A Method for Extracting Temporal Parameters Based on Hidden Markov Models in Body Sensor Networks With Inertial Sensors.
#@Eric Guenterberg,Allen Y. Yang,Hassan Ghasemzadeh,Roozbeh Jafari,Ruzena Bajcsy,Shankar Sastry
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869971
#%205563
#%348202
#%348163
#%567506
#%808173
#%1002739
#%1032797
#!
  
#*Web-Based Multilayer Viewing Interface for Knee Cartilage.
#@Chueh-Loo Poh,Richard Kitney,Shahid Akhtar
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870055
#%593637
#%894125
#!
  
#*Automatic Detection System for Cough Sounds as a Symptom of Abnormal Health Condition.
#@Sung-Hwan Shin,Takeo Hashimoto,Shigeko Hatano
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870059
#%12745
#!
  
#*Discovering Genes-Diseases Associations From Specialized Literature Using the Grid.
#@Alberto Faro,Daniela Giordano,Francesco Maiorana,Concetto Spampinato
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870006
#%472256
#%775660
#%810276
#%957101
#%959558
#%959722
#%1025183
#%32324
#!
  
#*Aggregation of Classifiers for Staining Pattern Recognition in Antinuclear Autoantibodies Analysis.
#@Paolo Soda,Giulio Iannello
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870031
#%80959
#%80656
#%1032102
#%1032074
#%1033393
#%1341024
#!
  
#*Feature-Based Fusion of Medical Imaging Data.
#@Vince D. Calhoun,T. Adal
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869983
#%497199
#%946299
#%2881839
#!
  
#*Development of a Wireless Sensor Glove for Surgical Skills Assessment.
#@Rachel C. King,Louis Atallah,Benny P. L. Lo,Guang-Zhong Yang
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869992
#% 
#!
  
#*Enhancing Privacy and Authorization Control Scalability in the Grid Through Ontologies.
#@Ignacio Blanquer,Vicente Hernández,Damià Segrelles,Erik Torres
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870021
#%7456
#%341698
#%716915
#%735480
#%775946
#%876717
#%1073111
#%1103594
#!
  
#*A Service-Oriented Medical Framework for Fast and Adaptive Information Delivery in Mobile Environment.
#@Eunjeong Park,Hyo Suk Nam
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870037
#%809057
#%845534
#%990247
#%990169
#%1126237
#%1126433
#%1185325
#!
  
#*Microarray Analysis of Autoimmune Diseases by Machine Learning Procedures.
#@Rubén Armañanzas,Borja Calvo,Iñaki Inza,Marcos López-Hoyos,Víctor Martínez-Taboada,Eduardo Ucar,Irantzu Bernales,Asier Fullaondo,Pedro Larrañaga,Ana M. Zubiaga
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870019
#%763022
#%763348
#%766031
#%1009215
#%1009234
#%1009683
#%1009800
#!
  
#*Investigating the Interaction Between Oncogene and Tumor Suppressor Protein.
#@Elena Pirogova,Metin Akay,Irena Cosic
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870034
#% 
#!
  
#*Support Vector Machines for Automated Recognition of Obstructive Sleep Apnea Syndrome From ECG Recordings.
#@Ahsan H. Khandoker,Marimuthu Palaniswami,Chandan K. Karmakar
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870040
#%806847
#!
  
#*Computer-Aided Diagnosis of Thyroid Malignancy Using an Artificial Immune System Classification Algorithm.
#@Konstantinos K. Delibasis,Pantelis A. Asvestas,George K. Matsopoulos,Emmanouil Zoulias,Sofia Tseleni-Balafouta
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870065
#%140
#%857676
#%872896
#%872805
#%885026
#%1032410
#%1044445
#%1045621
#!
  
#*Extraction of Sources of Tremor in Hand Movements of Patients With Movement Disorders.
#@Ramana Vinjamuri,Donald J. Crammond,Douglas Kondziolka,Heung-No Lee,Zhi-Hong Mao
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870076
#% 
#!
  
#*Bluetooth-Based Sensor Networks for Remotely Monitoring the Physiological Signals of a Patient.
#@Ying Zhang,Hannan Xiao
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870066
#%141497
#%413045
#%453228
#%584361
#%584325
#%802458
#%988792
#%1021568
#!
  
#*Rough Sets and Near Sets in Medical Imaging: A Review.
#@Aboul Ella Hassanien,Ajith Abraham,James F. Peters,Gerald Schaefer,Christopher Henry
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869988
#%80814
#%251987
#%252078
#%303260
#%561362
#%715968
#%834600
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#%909949
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#%941981
#%942168
#%942607
#%947488
#%982308
#%1044694
#%1045481
#%1157790
#%2990827
#!
  
#*Determining the Presence of Bias Error Using Statistical Methods.
#@David M. Kwartowitz,Robert L. Galloway,Richard G. Shiavi
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870018
#% 
#!
  
#*How Many Leads Are Necessary for a Reliable Reconstruction of Surface Potentials During Atrial Fibrillation?
#@María de la Salud Guillem,Andreas Bollmann,Andreu M. Climent,Daniela Husser,José Millet-Roig,Francisco Castells
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870077
#% 
#!
  
#*Fetal Weight Estimation Using the Evolutionary Fuzzy Support Vector Regression for Low-Birth-Weight Fetuses.
#@Jin-Hua Yu,Yuanyuan Wang,Ping Chen
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869968
#%871361
#%879767
#%1028296
#%1271634
#!
  
#*Markerless Human Motion Analysis in Gauss-Laguerre Transform Domain: An Application to Sit-To-Stand in Young and Elderly People.
#@Michela Goffredo,Maurizio Schmid,Silvia Conforto,Marco Carli,Alessandro Neri,Tommaso D'Alessio
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870058
#% 
#!
  
#*In-Ear Vital Signs Monitoring Using a Novel Microoptic Reflective Sensor.
#@Stefan Vogel,Markus Hülsbusch,Thomas Hennig,Vladimir Blazek,Steffen Leonhardt
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870007
#% 
#!
  
#*Pervasive Access to MRI Bias Artifact Suppression Service on a Grid.
#@Edoardo Ardizzone,Orazio Gambino,Alessandro Genco,Roberto Pirrone,Salvatore Sorce
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869982
#%79987
#%80399
#%82771
#%82781
#%82949
#%85437
#%163063
#%196446
#%495331
#%601967
#%711100
#%727355
#%806421
#%816302
#%1179279
#%1295345
#!
  
#*Overview of Advanced Computer Vision Systems for Skin Lesions Characterization.
#@Ilias Maglogiannis,Charalampos N. Doukas
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870067
#%434216
#%1009388
#!
  
#*Real-Time 3-D Ultrasound Scan Conversion Using a Multicore Processor.
#@Bo Zhuang,Vijay Shamdasani,Siddhartha Sikdar,Ravi Managuli,Yongmin Kim
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869996
#%252936
#%587045
#%806494
#%1008478
#!
  
#*Indexes for Three-Class Classification Performance Assessment - An Empirical Comparison.
#@Mehul P. Sampat,Amit C. Patel,Yuhling Wang,Shalini Gupta,Chih-Wen Kan,Alan C. Bovik,Mia K. Markey
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870010
#%1009514
#!
  
#*MicroRNAs and Cancer - The Search Begins!
#@Anastasis Oulas,Martin Reczko,Panayiota Poirazi
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
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#*Dynamic Voltage and Frequency Scaling For On-Demand Performance and Availability of Biomedical Embedded Systems.
#@Dejan Raskovic,David Giessel
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
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#*New Decision Support Tool for Treatment Intensity Choice in Childhood Acute Lymphoblastic Leukemia.
#@Carlos Eduardo Pedreira,Leonardo Macrini,Marcelo G. Land,Elaine S. Costa
#t2009
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#!
  
#*Evaluating Statistical Tests on OLAP Cubes to Compare Degree of Disease.
#@Carlos Ordonez,Zhibo Chen
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#*Medical Image Segmentation Using Genetic Algorithms.
#@Ujjwal Maulik
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#*Epileptic Seizure Detection in EEGs Using Time-Frequency Analysis.
#@Alexandros T. Tzallas,Markos G. Tsipouras,Dimitrios I. Fotiadis
#t2009
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#!
  
#*Modeling Interaction for Segmentation of Neighboring Structures.
#@Pingkun Yan,Ashraf A. Kassim,Weijia Shen,Mubarak Shah
#t2009
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#*An Activity-Subspace Approach for Estimating the Integrated Input Function and Relative Distribution Volume in PET Parametric Imaging.
#@Peng Qiu,Z. Jane Wang,K. J. Ray Liu,Zsolt Szabo
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
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#% 
#!
  
#*A Telehealth Architecture for Networked Embedded Systems: A Case Study in In Vivo Health Monitoring.
#@Foad Dabiri,Tammara Massey,Hyduke Noshadi,Hagop Hagopian,C. K. Lin,Robert Tan,Jacob Schmidt,Majid Sarrafzadeh
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
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#*Refining an Automatic EDSS Scoring Expert System for Routine Clinical Use in Multiple Sclerosis.
#@Mauro Gaspari,Davide Saletti,Cinzia Scandellari,Sergio Stecchi
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870013
#% 
#!
  
#*Guest Editorial Body Sensor Networks: From Theory to Emerging Applications.
#@Emil Jovanov,Carmen C. Y. Poon,Guang-Zhong Yang,Y. T. Zhang
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869977
#% 
#!
  
#*High Speed Biological Sequence Analysis With Hidden Markov Models on Reconfigurable Platforms.
#@Timothy F. Oliver,Bertil Schmidt,Yanto Jakop,Douglas L. Maskell
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870046
#% 
#!
  
#*An Interoperability Test Framework for HL7-Based Systems.
#@Tuncay Namli,Gunes Aluc,Asuman Dogac
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870060
#%5997
#!
  
#*Sensorless Motion Planning for Medical Needle Insertion in Deformable Tissues.
#@Ron Alterovitz,Kenneth Y. Goldberg,Jean Pouliot,I-Chow Hsu
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
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#%496964
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#!
  
#*Achieving Clinical Statement Interoperability Using R-MIM and Archetype-Based Semantic Transformations.
#@Ozgur Kilic,Asuman Dogac
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870049
#%680000
#%832470
#%913880
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#!
  
#*Providing Integrity and Authenticity in DICOM Images: A Novel Approach.
#@Luiz Octavio Massato Kobayashi,Sergio Shiguemi Furuie,Paulo Sergio Licciardi Messeder Barreto
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870075
#%88772
#%248651
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#!
  
#*Heartbeat Time Series Classification With Support Vector Machines.
#@Argyro Kampouraki,George Manis,Christophoros Nikou
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870032
#%1009356
#%1032082
#%1032738
#%3345249
#!
  
#*Computational Intelligence in Gait Research: A Perspective on Current Applications and Future Challenges.
#@Daniel T. H. Lai,Rezaul K. Begg,Marimuthu Palaniswami
#t2009
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#index2870085
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#!
  
#*Finding Multiple Coherent Biclusters in Microarray Data Using Variable String Length Multiobjective Genetic Algorithm.
#@Ujjwal Maulik,Anirban Mukhopadhyay,Sanghamitra Bandyopadhyay
#t2009
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#*Characterizing the Complexity of Spontaneous Electrical Signals in Cultured Neuronal Networks Using Approximate Entropy.
#@Lin Chen,Weihua Luo,Yong Deng,Zhen Wang,Shaoqun Zeng
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2870082
#% 
#!
  
#*Indexing 3-D Human Motion Repositories for Content-Based Retrieval.
#@Gaurav N. Pradhan,Balakrishnan Prabhakaran
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
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#*Enabling Location Privacy and Medical Data Encryption in Patient Telemonitoring Systems.
#@Ilias Maglogiannis,Leonidas Kazatzopoulos,Constantinos Delakouridis,Stathes Hadjiefthymiades
#t2009
#cIEEE Transactions on Information Technology in Biomedicine
#index2869994
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#*Intuitionistic Fuzzy Cognitive Maps for Medical Decision Making.
#@Dimitrios K. Iakovidis,E. Papageorgiou
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977847
#% 
#!
  
#*Full-Angle Fluorescence Diffuse Optical Tomography With Spatially Coded Parallel Excitation.
#@D. Wang,X. Liu,F. Liu,J. Bai
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977818
#%3111088
#!
  
#*Constructing distributed hippocratic video databases for privacy-preserving online patient training and counseling.
#@Jinye Peng,Noboru Babaguchi,Hangzai Luo,Yuli Gao,Jianping Fan
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Alignment method for spectrograms of DNA sequences.
#@Anca I. D. Bucur,Jasper van Leeuwen,Nevenka Dimitrova,Chetan Mittal
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977803
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#*Home-Based Monitoring and Assessment of Parkinson's Disease.
#@Laura Cunningham,S. S. Mason,Chris D. Nugent,G. G. Moore,Dewar D. Finlay,David D. Craig
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977857
#% 
#!
  
#*Gene function prediction with gene interaction networks: a context graph kernel approach.
#@Xin Li,Hsinchun Chen,Jiexun Li,Zhu Zhang
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
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#%438805
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#*On the classification of emotional biosignals evoked while viewing affective pictures: an integrated data-mining-based approach for healthcare applications.
#@Christos A. Frantzidis,Charalampos Bratsas,Manousos A. Klados,Evdokimos I. Konstantinidis,Chrysa D. Lithari,Ana B. Vivas,Christos L. Papadelis,Eleni Kaldoudi,Costas Pappas,Panagiotis D. Bamidis
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Exception discovery: a novel method for the identification of differentially expressed proteins.
#@Jung Eun Shim,Dan Bi Kim,Won Suk Lee,Sang Yun Cho,Eunsil Yu
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977720
#% 
#!
  
#*A Low-Power RFID Integrated Circuits for Intelligent Healthcare Systems.
#@S.-Y. Lee,L.-H. Wang,Q. Fang
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977774
#%248676
#%894455
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#!
  
#*Developing EMRs in Developing Countries.
#@W. Chen,M. Akay
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977849
#% 
#!
  
#*An accelerometer-based device for sleep apnea screening.
#@Daniel Sánchez Morillo,Juan Luis Rojas Ojeda,Luis Felipe Crespo Foix,Antonio León Jiménez
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977785
#%1164000
#!
  
#*Coclustering for cross-subject fiber tract analysis through diffusion tensor imaging.
#@Cui Lin,Darshan Pai,Shiyong Lu,Otto Muzik,Jing Hua
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977756
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#%640587
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#!
  
#*Characterization of 3-D coronary tree motion from MSCT angiography.
#@Guanyu Yang,Jian Zhou,Dominique Boulmier,Marie-Paule Garcia,Limin Luo,Christine Toumoulin
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977687
#%497166
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#!
  
#*A visual context-awareness-based sleeping-respiration measurement system.
#@Yung-Ming Kuo,Jiann-Shu Lee,Pau-Choo Chung
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977775
#%63409
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#%1033397
#%1044914
#!
  
#*Clinical assessment of wireless ECG transmission in real-time cardiac telemonitoring.
#@Álvaro Alesanco Iglesias,José García
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977717
#% 
#!
  
#*Sleep staging based on signals acquired through bed sensor.
#@Juha M. Kortelainen,Martin O. Mendez,Anna M. Bianchi,Matteo Matteucci,Sergio Cerutti
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977710
#% 
#!
  
#*Web2OHS: a Web2.0-based omnibearing homecare system.
#@Hao-Hsiang Ku,Chung-Ming Huang
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977680
#%80113
#%457839
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#%1179222
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#!
  
#*Design of a decision-support architecture for management of remotely monitored patients.
#@Jim Basilakis,Nigel H. Lovell,Stephen James Redmond,Branko G. Celler
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977744
#% 
#!
  
#*Twin SVM for gesture classification using the surface electromyogram.
#@Ganesh R. Naik,Dinesh Kant Kumar,Jayadeva Jayadeva
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977697
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#%1009356
#%1022645
#%1033700
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#!
  
#*An adaptive Monte Carlo approach to phase-based multimodal image registration.
#@Alexander Wong
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977737
#%498003
#%908493
#%1304413
#!
  
#*Quantifying palpation techniques in relation to performance in a clinical prostate exam.
#@Ninghuan Wang,Gregory J. Gerling,Reba Moyer Childress,Marcus L. Martin
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977799
#%2978777
#!
  
#*Guest Editorial Introduction to the Special Issue on Citizen Centered e-Health Systems in a Global Healthcare Environment: Selected Papers From ITAB 2009.
#@Constantinos S. Pattichis,Christos Schizas,Efthyvoulos C. Kyriakou,Dimitris I. Fotiadis,Marios S. Pattichis,Panagiotis D. Bamidis
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977860
#% 
#!
  
#*Multiscale Amplitude-Modulation Frequency-Modulation (AM-FM) Texture Analysis of Multiple Sclerosis in Brain MRI Images.
#@Christos P. Loizou,Víctor Murray,Marios S. Pattichis,I. Seimenis,Marios Pantziaris,Constantinos S. Pattichis
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977867
#% 
#!
  
#*An intelligent telecardiology system using a wearable and wireless ECG to detect atrial fibrillation.
#@Chin-Teng Lin,Kuan-Cheng Chang,Chun-Ling Lin,Chia-Cheng Chiang,Shao-Wei Lu,Shih-Sheng Chang,Bor-Shyh Lin,Hsin-Yueh Liang,Ray-Jade Chen,Yuan-Teh Lee,Li-Wei Ko
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977766
#% 
#!
  
#*GRISSOM Platform: Enabling Distributed Processing and Management of Biological Data Through Fusion of Grid and Web Technologies.
#@Aristotelis A. Chatziioannou,Ioannis Kanaris,Charalampos Doukas,Panagiotis Moulos,Fragiskos N. Kolisis,Ilias Maglogiannis
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977858
#% 
#!
  
#*Guest editorial: special section on affective and pervasive computing for healthcare.
#@Athanasios V. Vasilakos,Christine L. Lisetti
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977693
#% 
#!
  
#*Predicting the risk of low-fetal birth weight from cardiotocographic signals using ANBLIR system with deterministic annealing and epsilon-insensitive learning.
#@Robert Czabanski,Michal Jezewski,Janusz Wrobel,Janusz Jezewski,Krzysztof Horoba
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977800
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#%1033458
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#!
  
#*Computer-aided classification of zoom-endoscopical images using Fourier filters.
#@Michael Häfner,Leonhard Brunauer,Hannes Payer,Robert Resch,Alfred Gangl,Andreas Uhl,Friedrich Wrba,Andreas Vécsei
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977813
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#%80283
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#!
  
#*A wearable smartphone-based platform for real-time cardiovascular disease detection via electrocardiogram processing.
#@Joseph Oresko,Zhanpeng Jin,Jun Cheng,Shimeng Huang,Yuwen Sun,Heather Duschl,Allen C. Cheng
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977700
#%389261
#!
  
#*BIOTEX: biosensing textiles for personalized healthcare management.
#@Shirley Coyle,King Tong Lau,Niall Moyna,Donal O'Gorman,Dermot Diamond,Fabio Di Francesco,Daniele Costanzo,Pietro Salvo,Maria Giovanna Trivella,Danilo De Rossi,Nicola Taccini,Rita Paradiso,Jacque-André Porchet,Andrea Ridolfi,Jean Luprano,Cyril Chuzel,Thierry Lanier,Frédéric Revol-Cavalier,Sébastien Schoumacker,Véronique Mourier,Isabelle Chartier,Reynald Convert,Henri De-Moncuit,Christina Bini
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977688
#%453349
#!
  
#*Sleep-States-Transition Model by Body Movement and Estimation of Sleep-Stage-Appearance Probabilities by Kalman Filter.
#@Y. Kurihara,K. Watanabe,H. Tanaka
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977793
#%140
#%2870014
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#!
  
#*ECG signal compression and classification algorithm with quad level vector for ECG holter system.
#@Hyejung Kim,Refet Firat Yazicioglu,Patrick Merken,Chris Van Hoof,Hoi-Jun Yoo
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977841
#%808455
#!
  
#*Bayesian methods for fMRI time-series analysis using a nonstationary model for the noise.
#@Vangelis P. Oikonomou,Evanthia E. Tripoliti,Dimitrios I. Fotiadis
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977832
#%632037
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#!
  
#*Applying Wearable Solutions in Dependent Environments.
#@Juan A. Fraile,Javier Bajo,Juan M. Corchado,Ajith Abraham
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
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#*Understanding and supporting lightweight communication in hospital work.
#@David A. Mejia,Jesús Favela,Alberto L. Morán
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Absolute electrical impedance tomography (aEIT) guided ventilation therapy in critical care patients: simulations and future trends.
#@Mouloud Azzedine Denaï,Mahdi Mahfouf,Suzani Mohamad-Samuri,George Panoutsos,Brian H. Brown,Gary H. Mills
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977810
#%2875433
#!
  
#*Dynamic-model-based method for selecting significantly expressed genes from time-course expression profiles.
#@Fang-Xiang Wu,Wen-Jun Zhang
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977679
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#!
  
#*The pseudotemporal bootstrap for predicting glaucoma from cross-sectional visual field data.
#@Allan Tucker,David Garway-Heath
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977718
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#!
  
#*Emotion recognition from EEG using higher order crossings.
#@Panagiotis Petrantonakis,Leontios J. Hadjileontiadis
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
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#*Depicting Educational Content Repurposing Context and Inheritance.
#@Eleni Kaldoudi,N. Dovrolis,Stathis Th. Konstantinidis,Panagiotis D. Bamidis
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977850
#% 
#!
  
#*Discriminating stress from cognitive load using a wearable EDA device.
#@Cornelia Setz,Bert Arnrich,Johannes Schumm,Roberto La Marca,Gerhard Tröster,Ulrike Ehlert
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977839
#% 
#!
  
#*Computer-aided diagnosis with temporal analysis to improve radiologists' interpretation of mammographic mass lesions.
#@Sheila Timp,Celia Varela,Nico Karssemeijer
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977736
#% 
#!
  
#*Wearable assistant for Parkinson's disease patients with the freezing of gait symptom.
#@Marc Bächlin,Meir Plotnik,Daniel Roggen,Inbal Maidan,Jeffrey M. Hausdorff,Nir Giladi,Gerhard Tröster
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977831
#%3210943
#!
  
#*Experimental analysis of a mobile health system for mood disorders.
#@Tammara Massey,Gustavo Marfia,Miodrag Potkonjak,Majid Sarrafzadeh
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977784
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#%834730
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#!
  
#*Development and impact of radio-frequency identification-based workflow management in health promotion center: using interrupted time-series analysis.
#@Ju Young Kim,Hak Jong Lee,Nam-Soo Byeon,Hyun-Chul Kim,Kyoo-Seop Ha,Chin-Youb Chung
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977747
#%248676
#!
  
#*Improved noninvasive intracranial pressure assessment with nonlinear kernel regression.
#@Peng Xu,Magdalena Kasprowicz,Marvin Bergsneider,Xiao Hu
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977812
#%1023068
#%1023408
#%1156052
#!
  
#*Empowering citizens for well-being and chronic disease management with wellness diary.
#@Elina M. Mattila,Ilkka Korhonen,Jukka Salminen,Aino Ahtinen,Esa Koskinen,Antti Särelä,Juha Pärkkä,Raimo Lappalainen
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977816
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#!
  
#*A fully programmable computing architecture for medical ultrasound machines.
#@Fabio Kurt Schneider,Anup Agarwal,Yang Mo Yoo,Tetsuya Fukuoka,Yongmin Kim
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977682
#% 
#!
  
#*Guest editorial: special section on new and emerging technologies in bioinformatics and bioengineering.
#@Konstantina S. Nikita,Dimitrios I. Fotiadis
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977758
#%912590
#%1201513
#%1202058
#%3004519
#%3005962
#!
  
#*Charge state determination of peptide tandem mass spectra using support vector machine (SVM).
#@An-Min Zou,Jin-Hong Shi,Jiarui Ding,Fang-Xiang Wu
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977757
#%121013
#%438311
#!
  
#*Toward emotion aware computing: an integrated approach using multichannel neurophysiological recordings and affective visual stimuli.
#@Christos A. Frantzidis,Charalampos Bratsas,Christos L. Papadelis,Evdokimos I. Konstantinidis,Costas Pappas,Panagiotis D. Bamidis
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977754
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#%1032722
#%1032681
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#%3005962
#%3104102
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#*Personalization algorithm for real-time activity recognition using PDA, wireless motion bands, and binary decision tree.
#@Juha Pärkkä,Luc Cluitmans,Miikka Ermes
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977745
#%516077
#%2881285
#!
  
#*Active Learning Methods for Electrocardiographic Signal Classification.
#@Edoardo Pasolli,Farid Melgani
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
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#%335679
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#!
  
#*Fast and accurate 3-D registration of HR-pQCT images.
#@Lin Shi,Defeng Wang,Vivian W. Y. Hung,Benson H. Y. Yeung,James F. Griffith,Winnie C. W. Chu,Pheng-Ann Heng,Jack C. Y. Cheng,Ling Qin
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977701
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#%593637
#%1031118
#!
  
#*Phase-Based Level Set Segmentation of Ultrasound Images.
#@Ahror Belaid,Djamal Boukerroui,Yves Maingourd,Jean-François Lerallut
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977859
#% 
#!
  
#*TeleOph: a secure real-time teleophthalmology system.
#@Yongdong Wu,Zhou Wei,Haixia Yao,Zhigang Zhao,Lek Heng Ngoh,Robert H. Deng,Shengsheng Yu
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977759
#% 
#!
  
#*An EMI-aware prioritized wireless access scheme for e-health applications in hospital environments.
#@Phond Phunchongharn,Dusit Niyato,Ekram Hossain,Sergio Camorlinga
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977765
#%678868
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#!
  
#*High-resolution versus high-sensitivity SPECT imaging with geometric blurring compensation for various parallel-hole collimation geometries.
#@Bin Zhang,Gengsheng L. Zeng
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977809
#% 
#!
  
#*@neurIST: Infrastructure for Advanced Disease Management Through Integration of Heterogeneous Data, Computing, and Complex Processing Services.
#@Siegfried Benkner,Antonio Arbona,Guntram Berti,Alessandro Chiarini,Robert Dunlop,Gerhard Engelbrecht,Alejandro F. Frangi,Christoph M. Friedrich,S. Hanser,Peer Hasselmeyer,Rod D. Hose,Jimison Iavindrasana,M. Köhler,Luigi Lo Iacono,Guy Lonsdale,Rodolphe Meyer,Bob Moore,Hariharan Rajasekaran,Paul E. Summers,A. Wöhrer,S. Wood
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Editorial note on the processing, storage, transmission, acquisition, and retrieval (P-STAR) of bio, medical, and health information.
#@Yuan-Ting Zhang,Carmen C. Y. Poon
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977709
#%2802417
#%2869973
#%2870015
#%2977722
#%2977691
#!
  
#*Real-Time Visualized Freehand 3D Ultrasound Reconstruction Based on GPU.
#@Y. Dai,J. Tian,D. Dong,G. Yan,H. Zheng
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977843
#%407331
#%497219
#%593269
#!
  
#*Physics-based interactive volume manipulation for sharing surgical process.
#@Megumi Nakao,Kotaro Minato
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
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#%593269
#%647325
#%649765
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#%806403
#%833634
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#%1119301
#%1133454
#%1133907
#%1337836
#%1346716
#!
  
#*Enhancing battery efficiency for pervasive health-monitoring systems based on electronic textiles.
#@Nenggan Zheng,Zhaohui Wu,Man Lin,Laurence Tianruo Yang
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977792
#%53096
#%133121
#%141446
#%283015
#%412911
#%437081
#%450507
#%453048
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#%453228
#%453284
#%483674
#%793355
#%805610
#%1078177
#%1179207
#%1341143
#!
  
#*FABC: retinal vessel segmentation using adaboost.
#@Carmen Alina Lupascu,Domenico Tegolo,Emanuele Trucco
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977681
#%497166
#%497693
#%908558
#%1031975
#%1238641
#%3077373
#%3077397
#!
  
#*An embedded mobile ECG reasoning system for elderly patients.
#@Dong-Her Shih,Hsiu-Sen Chiang,Binshan Lin,Shih-Bin Lin
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977835
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#%840390
#%1044383
#%1112548
#%1155870
#%1163274
#%1271487
#!
  
#*GPGPU-Aided Ensemble Empirical-Mode Decomposition for EEG Analysis During Anesthesia.
#@D. Chen,D. Li,M. Xiong,H. Bao,X. Li
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977822
#%990358
#!
  
#*Using the Dempster-Shafer Theory of Evidence With a Revised Lattice Structure for Activity Recognition.
#@Jing Liao,Yaxin Bi,Chris D. Nugent
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977866
#% 
#!
  
#*Interoperability in Digital Electrocardiography: Harmonization of ISO/IEEE x73-PHD and SCP-ECG.
#@Jesús D. Trigo,Franco Chiarugi,Álvaro Alesanco Alesanco,M. Martínez-Espronceda,L. Serrano,Catherine E. Chronaki,J. Escayola,I. Martínez,J. García
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977703
#%734693
#%1179213
#!
  
#*A cusum-based multilevel alerting method for physiological monitoring.
#@Ping Yang,Guy A. Dumont,J. Mark Ansermino
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977779
#%495438
#%904429
#!
  
#*Evaluation of low-level controllers for an orthopedic surgery robotic system.
#@Duygun Eral Barkana
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977708
#%920324
#%1151751
#%1274305
#!
  
#*Remote wound monitoring of chronic ulcers.
#@Sonja A. Weber,Niall Watermann,Jacques Jossinet,J. Anthony Byrne,Jonquille Chantrey,Shabana Alam,Karen So,Jim Bush,Sharon O'Kane,Eric T. McAdams
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977829
#% 
#!
  
#*Real-time detection of apneas on a PDA.
#@Alfredo Burgos,Alfredo Goñi,Arantza Illarramendi,Jesús Bermúdez
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977772
#%334840
#%759524
#%1009242
#!
  
#*LOBIN: E-Textile and Wireless-Sensor-Network-Based Platform for Healthcare Monitoring in Future Hospital Environments.
#@Gregorio Lopez,Victor Custodio,Jose Ignacio Moreno
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977823
#%802586
#%1183720
#%1312177
#%3236788
#!
  
#*SVM-based multimodal classification of activities of daily living in health smart homes: sensors, algorithms, and first experimental results.
#@Anthony Fleury,Michel Vacher,Norbert Noury
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977715
#%14160
#%108605
#%271879
#%759687
#%839546
#%918011
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#%1231320
#%3138526
#!
  
#*On combining morphological component analysis and concentric morphology model for mammographic mass detection.
#@Xinbo Gao,Ying Wang,Xuelong Li,Dacheng Tao
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977731
#%407248
#%3345519
#!
  
#*An Optimized Tongue Image Color Correction Scheme.
#@X. Wang,D. Zhang
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977702
#%941438
#%1031572
#%1032379
#%1156052
#%3077282
#!
  
#*Eigenleads: ECG leads for maximizing information capture and improving SNR.
#@Dewar D. Finlay,Chris D. Nugent,Mark P. Donnelly,Robert L. Lux
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977694
#% 
#!
  
#*iCalm: wearable sensor and network architecture for wirelessly communicating and logging autonomic activity.
#@Richard Ribon Fletcher,Kelly Dobson,Matthew S. Goodwin,Hoda Eydgahi,Oliver Wilder-Smith,David Fernholz,Yuta Kuboyama,Elliott Bruce Hedman,Ming-Zher Poh,Rosalind W. Picard
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977753
#% 
#!
  
#*An overview of technologies related to care for venous leg ulcers.
#@Meghan Sarah Hegarty,Edward Grant,Lawrence Reid
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977746
#% 
#!
  
#*Wheelchair detection using cascaded decision tree.
#@Chun-Rong Huang,Pau-Choo Chung,Kuo-Wei Lin,Sheng-Chieh Tseng
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977787
#%127765
#%293831
#%500394
#%907739
#%1009356
#%1009896
#%1033714
#%1042493
#%1042854
#!
  
#*A Holistic Environment for the Design and Execution of Self-Adaptive Clinical Pathways.
#@D. A. Alexandrou,I. E. Skitsas,G. N. Mentzas
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977851
#% 
#!
  
#*Equivalent Moving Dipole Localization of Cardiac Ectopic Activity in a Swine Model During Pacing.
#@D. Lai,C. Liu,Michael Eggen,Paul A. Iaizzo,B. He
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977690
#% 
#!
  
#*Guest editorial: special section on personal health systems.
#@Nicos Maglaveras,Paolo Bonato,Toshiyo Tamura
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977802
#%1012991
#%1179213
#%1179207
#!
  
#*Comparison of Multiresolution Features for Texture Classification of Carotid Atherosclerosis From B-Mode Ultrasound.
#@Nikolaos N. Tsiaparas,Spyretta Golemati,I. Andreadis,J. S. Stoitsis,Ioannis K. Valavanis,Konstantina S. Nikita
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977865
#% 
#!
  
#*Feature-space-based fMRI analysis using the optimal linear transformation.
#@Fengrong Sun,Drew Morris,Wayne Lee,Margot J. Taylor,Travis Mills,Paul S. Babyn
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977786
#%498743
#%1009790
#!
  
#*Feasibility of modified remotely monitored in-home gaming technology for improving hand function in adolescents with cerebral palsy.
#@Meghan Huber,Bryan Rabin,Ciprian Docan,Grigore C. Burdea,Moustafa AbdelBaky,Meredith R. Golomb
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977767
#% 
#!
  
#*Local hemodynamics and intimal hyperplasia at the venous side of a porcine arteriovenous shunt.
#@Themistoklis A. Manos,Dimitrios P. Sokolis,Athina T. Giagini,Constantinos H. Davos,John D. Kakisis,Eleftherios P. Kritharis,Nikos Stergiopulos,Panayotis E. Karayannacos,Sokrates Tsangaris
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977724
#% 
#!
  
#*Trustworthy Data Collection From Implantable Medical Devices Via High-Speed Security Implementation Based on IEEE 1363.
#@F. Hu,Q. Hao,Marcin Lukowiak,Q. Sun,Kyle Wilhelm,Stanislaw Radziszowski,Y. Wu
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977817
#%42702
#%301934
#%1278508
#!
  
#*Computational intelligent gait-phase detection system to identify pathological gait.
#@Chathuri M. Senanayake,S. M. N. Arosha Senanayake
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977795
#% 
#!
  
#*A pervasive visual-haptic framework for virtual delivery training.
#@Andrea F. Abate,Giovanni Acampora,Vincenzo Loia,Stefano Ricciardi,Athanasios V. Vasilakos
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977824
#%273922
#%437864
#%476021
#%1043595
#%1088805
#%1138483
#!
  
#*Universal glucose models for predicting subcutaneous glucose concentration in humans.
#@Adiwinata Gani,Andrei V. Gribok,Yinghui Lu,W. Kenneth Ward,Robert A. Vigersky,Jaques Reifman
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977696
#% 
#!
  
#*Noninvasive Biological Sensor System for Detection of Drunk Driving.
#@Kohji Murata,Etsunori Fujita,Shigeyuki Kojima,Shinitirou Maeda,Yumi Ogura,Tsutomu Kamei,Toshio Tsuji,Shigehiko Kaneko,Masao Yoshizumi,N. Suzuki
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977852
#% 
#!
  
#*Texture-based identification and characterization of interstitial pneumonia patterns in lung multidetector CT.
#@Panayiotis Korfiatis,Anna Karahaliou,Alexandra Kazantzi,Christina Kalogeropoulou,Lena Costaridou
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977808
#% 
#!
  
#*Estimating Posture-Recognition Performance in Sensing Garments Using Geometric Wrinkle Modeling.
#@Holger Harms,Oliver Amft,Gerhard Tröster
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977773
#%257125
#%1244667
#%1310881
#%3210967
#!
  
#*Detection of Falls Among the Elderly by a Floor Sensor Using the Electric Near Field.
#@Henry Rimminen,J. Lindström,M. Linnavuo,Raimo Sepponen
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977821
#%90920
#%198712
#%806693
#%1254310
#!
  
#*Modeling the socially intelligent communication of health information to a patient's personal social network.
#@Wendy Moncur,Ehud Reiter,Judith Masthoff,Alex Carmichael
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977814
#%81012
#%90954
#%771077
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#!
  
#*A software framework for the analysis of complex microscopy image data.
#@Jerry Chao,Sally E. Ward,Raimund J. Ober
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977830
#% 
#!
  
#*Complementary Gene Signature Integration in Multiplatform Microarray Experiments.
#@Michalis E. Blazadonakis,Michalis E. Zervakis,Dimitris Kafetzopoulos
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977864
#% 
#!
  
#*Fast katsevich algorithm based on GPU for helical cone-beam computed tomography.
#@Guorui Yan,Jie Tian,Shouping Zhu,Chenghu Qin,Yakang Dai,Fei Yang,Di Dong,Ping Wu
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977768
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#!
  
#*Predicting protein function by frequent functional association pattern mining in protein interaction networks.
#@Young-Rae Cho,Aidong Zhang
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977725
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#%641841
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#!
  
#*Noninvasive focused monitoring and irradiation of head tissue phantoms at microwave frequencies.
#@Konstantinos T. Karathanasis,Ioannis A. Gouzouasis,Irene S. Karanasiou,Melpomeni I. Giamalaki,George Stratakos,Nikolaos K. Uzunoglu
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977752
#% 
#!
  
#*A multimodal transducer for cardiopulmonary activity monitoring in emergency.
#@Antonio Lanata,Enzo Pasquale Scilingo,Danilo De Rossi
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977716
#% 
#!
  
#*Toward a highly accurate ambulatory system for clinical gait analysis via UWB radios.
#@Heba A. Shaban,Mohamad Abou El-Nasr,R. Michael Buehrer
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977844
#%691813
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#!
  
#*A novel neural-network model for deriving standard 12-lead ECGs from serial three-lead ECGs: application to self-care.
#@Hussein Atoui,Jocelyne Fayn,Paul Rubel
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977707
#% 
#!
  
#*Integrating segmentation methods from different tools into a visualization program using an object-based plug-in interface.
#@Felix Fischer,M. Alper Selver,Walter Hillen,Cüneyt Güzelis
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977778
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#%1133810
#%1163374
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#!
  
#*Comparative evaluation of susceptibility to motion artifact in different wearable systems for monitoring respiratory rate.
#@Antonio Lanata,Enzo Pasquale Scilingo,Elena Nardini,Giannicola Loriga,Rita Paradiso,Danilo De Rossi
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977739
#% 
#!
  
#*A contextual data mining approach toward assisting the treatment of anxiety disorders.
#@Theodor Chris Panagiotakopoulos,Dimitrios P. Lyras,Miltos Livaditis,Kyriakos N. Sgarbas,George C. Anastassopoulos,Dimitrios K. Lymberopoulos
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977842
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#!
  
#*Construction of gene networks with hybrid approach from expression profile and gene ontology.
#@Liping Jing,Michael K. Ng,Ying Liu
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Results of using a wireless inertial measurirlg system to quantify gait motions in control subjects.
#@Iris Tien,Steven D. Glaser,Ruzena Bajcsy,Douglas S. Goodin,Michael J. Aminoff
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977764
#%60444
#!
  
#*Autoadaptivity and optimization in distributed ECG interpretation.
#@Piotr Augustyniak
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977761
#% 
#!
  
#*Mining characteristic relations bind to RNA secondary structures.
#@Qingfeng Chen,Yi-Ping Phoebe Chen
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977827
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#%839706
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#!
  
#*Feature Selection and Classification in Supporting Report-Based Self-Management for People with Chronic Pain.
#@Y. Huang,Huiru Zheng,Chris D. Nugent,Paul J. McCullagh,Norman D. Black,K. E. Vowles,L. McCracken
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977853
#% 
#!
  
#*Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs.
#@Deepak Bandyopadhyay,Jun Huan,Jinze Liu,Jan Prins,Jack Snoeyink,Wei Wang,Alexander Tropsha
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977711
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#!
  
#*Design and implementation of a portable long-term physiological signal recorder.
#@Timo Vuorela,Ville-Pekka Seppä,Jukka Vanhala,Jari Hyttinen
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977796
#%453349
#%680830
#%734723
#!
  
#*An interaction-embedded HMM framework for human behavior understanding: with nursing environments as examples.
#@Chin-De Liu,Yi-Nung Chung,Pau-Choo Chung
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
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#!
  
#*Local structure-based region-of-interest retrieval in brain MR images.
#@Devrim Unay,Ahmet Ekin,Radu S. Jasinschi
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977781
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#!
  
#*Web-services-based resource discovery model and service deployment on healthgrids.
#@Aisha Naseer,Lampros K. Stergioulas
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977750
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#!
  
#*Defining quality-measurable medical alerts from incomplete data through fuzzy linguistic variables and modifiers.
#@Wilmondes Manzi de Arantes Júnior,Christine Verdier
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977751
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#!
  
#*Numerical methods and workstation for the quantitative analysis of real-time myocardial contrast echocardiography.
#@Feng-rong Sun,Ming-qiang Zhang,Xiao-bo Jia,Xiao-jing Wang,Gui-hua Yao,Yun Zhang
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977738
#% 
#!
  
#*Nonconstrained sleep monitoring system and algorithms using air-mattress with balancing tube method.
#@Jae Hyuk Shin,Young Joon Chee,Do-Un Jeong,Kwang Suk Park
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977820
#%1164000
#%2870014
#!
  
#*A multiresolution method for tagline detection and indexing.
#@Xiaohui Yuan,Jian Zhang,Bill P. Buckles
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977789
#%908467
#%1032334
#!
  
#*Automated nonlinear feature generation and classification of foot pressure lesions.
#@Tingting Mu,Todd C. Pataky,Andrew H. Findlow,Min S. H. Aung,John Yannis Goulermas
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977760
#%443555
#%1023026
#%1023406
#%3006861
#!
  
#*Prognosis: a wearable health-monitoring system for people at risk: methodology and modeling.
#@Alexandros Pantelopoulos,Nikolaos G. Bourbakis
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977714
#%81016
#%760140
#%802458
#%940652
#%1113301
#%1307191
#!
  
#*Using heterogeneous wireless sensor networks in a telemonitoring system for healthcare.
#@Juan M. Corchado,Javier Bajo,Dante I. Tapia,Ajith Abraham
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977730
#%147579
#%509740
#%584946
#%623907
#%802586
#%809241
#%809177
#%857761
#%997885
#%1141646
#!
  
#*Data mining of gene expression data by fuzzy and hybrid fuzzy methods.
#@Gerald Schaefer,Tomoharu Nakashima
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977806
#%310912
#%763728
#%766031
#%766347
#%1226924
#!
  
#*Motion-tolerant magnetic earring sensor and wireless earpiece for wearable photoplethysmography.
#@Ming-Zher Poh,Nicholas C. Swenson,Rosalind W. Picard
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977771
#%1310854
#%1310896
#!
  
#*A triaxial accelerometer-based physical-activity recognition via augmented-signal features and a hierarchical recognizer.
#@Adil Mehmood Khan,Young-Koo Lee,Sungyoung Lee,Tae-Seong Kim
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977721
#%14659
#%257135
#%453180
#%680827
#%1031069
#%1047257
#!
  
#*An EMG-based robot control scheme robust to time-varying EMG signal features.
#@Panagiotis K. Artemiadis,Kostas J. Kyriakopoulos
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977686
#%920383
#!
  
#*SMARTDIAB: a communication and information technology approach for the intelligent monitoring, management and follow-up of type 1 diabetes patients.
#@Stavroula G. Mougiakakou,Christos S. Bartsocas,Evangelos Bozas,Nikos Chaniotakis,Dimitra Iliopoulou,Ioannis N. Kouris,Sotiris Pavlopoulos,Aikaterini Prountzou,Marios Skevofilakas,Alexandre Tsoukalis,Kostas Varotsis,Andriani Vazeou,Konstantia Zarkogianni,Konstantina S. Nikita
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977807
#%760204
#%3003125
#%3345328
#!
  
#*Providing interoperability of eHealth communities through peer-to-peer networks.
#@Ozgur Kilic,Asuman Dogac,Marco Eichelberg
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977763
#%296727
#%2870049
#!
  
#*A novel middleware solution to improve ubiquitous healthcare systems aided by affective information.
#@Tarik Taleb,Dario Bottazzi,Nidal Nasser
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977845
#%334335
#%875908
#%1012991
#%1027265
#%1027215
#%1179222
#%1179250
#%1226704
#%1278544
#!
  
#*The RFID technology for neurosciences: feasibility of limbs' monitoring in sleep diseases.
#@Cecilia Occhiuzzi,Gaetano Marrocco
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977825
#%3138526
#!
  
#*Effects of dielectric values of human body on specific absorption rate following 430, 800, and 1200 MHz RF exposure to ingestible wireless device.
#@L. S. Xu,Max Q.-H. Meng,Chao Hu
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977733
#% 
#!
  
#*Smart garments for emergency operators: the proeTEX project.
#@Davide Curone,Emanuele Lindo Secco,Alessandro Tognetti,Giannicola Loriga,Gabriela Dudnik,Michele Risatti,Rhys Whyte,Annalisa Bonfiglio,Giovanni Magenes
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977770
#%706618
#%706612
#%1179223
#!
  
#*Wireless, multipurpose in-home health monitoring platform: two case trials.
#@Sakari Junnila,Harri Kailanto,Juho Merilahti,Antti-Matti Vainio,Antti Vehkaoja,Mari Zakrzewski,Jari Hyttinen
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977712
#%5559
#%256956
#%1012991
#%1315407
#%2870014
#!
  
#*Searching Protein 3-D Structures for Optimal Structure Alignment Using Intelligent Algorithms and Data Structures.
#@Tomás Novosad,Václav Snásel,Ajith Abraham,Jack Y. Yang
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977705
#%87
#%522
#%120898
#%211977
#%596003
#%675093
#%839293
#%936644
#%951459
#%951134
#%1112879
#%3000915
#!
  
#*Processing of signals recorded through smart devices: sleep-quality assessment.
#@Anna M. Bianchi,Martin O. Mendez,Sergio Cerutti
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977828
#% 
#!
  
#*Data-Centric Privacy Protocol for Intensive Care Grids.
#@J. Luna,Marios D. Dikaiakos,Manolis Marazakis,Theodoros Kyprianou
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977836
#%7518
#%7584
#%951394
#%970683
#!
  
#*Detection of movement in bed using unobtrusive load cell sensors.
#@Adriana M. Adami,Misha Pavel,Tamara L. Hayes,Clifford M. Singer
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977819
#%757883
#!
  
#*Evaluating the lower-body electromyogram signal acquired from the feet as a noise reference for standing ballistocardiogram measurements.
#@Omer T. Inan,Gregory T. A. Kovacs,Laurent Giovangrandi
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977769
#%80884
#!
  
#*MyCare Card Development: Portable GUI Framework for the Personal Electronic Health Record Device.
#@V. O. Rybynok,P. A. Kyriacou,J. Binnersley,A. Woodcock
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977863
#% 
#!
  
#*Textile technology for the vital signs monitoring in telemedicine and extreme environments.
#@Marco Di Rienzo,Paolo Meriggi,Francesco Rizzo,Paolo Castiglioni,Carolina Lombardi,Maurizio Ferratini,Gianfranco Parati
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977788
#%453278
#!
  
#*Structural action recognition in body sensor networks: distributed classification based on string matching.
#@Hassan Ghasemzadeh,Vitali Loseu,Roozbeh Jafari
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977815
#%56048
#%200715
#%374030
#%413045
#%507004
#%527299
#%793249
#%897486
#%993304
#%1031570
#%1171660
#%1206868
#%1303115
#!
  
#*Editorial note on bio, medical, and health informatics.
#@Yuan-Ting Zhang,Carmen C. Y. Poon
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977685
#%2869985
#%2870049
#!
  
#*What does your chair know about your stress level?
#@Bert Arnrich,Cornelia Setz,Roberto La Marca,Gerhard Tröster,Ulrike Ehlert
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977742
#%634567
#%680801
#!
  
#*Smart textile-based wearable biomedical systems: a transition plan for research to reality.
#@Sungmee Park,Sundaresan Jayaraman
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977722
#% 
#!
  
#*A patient-adaptive profiling scheme for ECG beat classification.
#@Miad Faezipour,Adnan Saeed,Suma Chandrika Bulusu,Mehrdad Nourani,Hlaing Minn,Lakshman Tamil
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977846
#%707107
#%728688
#%1021566
#%2870042
#%2931539
#%3445626
#!
  
#*Automatic segmentation of spinal cord mri using symmetric boundary tracing.
#@Dipti Prasad Mukherjee,Irene Cheng,Nilanjan Ray,Vivian Mushahwar,Marc Lebel,Anup Basu
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977723
#%1031035
#!
  
#*Integrating heterogeneous classifier ensembles for EMG signal decomposition based on classifier agreement.
#@Sarbast M. Rasheed,Daniel W. Stashuk,Mohamed S. Kamel
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977840
#%1017427
#%1023309
#%1026454
#%1032102
#%1044529
#%1046105
#%1164002
#!
  
#*On the use of ultrasonic waves as a communications medium in biosensor networks.
#@Yiannis Davilis,Antonis Kalis,Antonis Ifantis
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977826
#%505778
#!
  
#*Diagnostic models based on personalized analysis of trends (PAT).
#@Donna L. Hudson,Maurice E. Cohen
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977798
#%1317465
#!
  
#*Classification of mycobacterium tuberculosis in images of ZN-stained sputum smears.
#@Rethabile Khutlang,Sriram Krishnan,Ronald Dendere,Andrew Whitelaw,Konstantinos Veropoulos,Genevieve Learmonth,Tania S. Douglas
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977732
#%334952
#%335043
#%744494
#%835228
#%1031893
#%1032102
#%1044391
#%1052633
#%3345953
#!
  
#*A real-time and self-calibrating algorithm based on triaxial accelerometer signals for the detection of human posture and activity.
#@Davide Curone,Gian Mario Bertolotti,Andrea Cristiani,Emanuele Lindo Secco,Giovanni Magenes
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977780
#%706612
#%2881285
#!
  
#*Heart rate and accelerometer data fusion for activity assessment of rescuers during emergency interventions.
#@Davide Curone,Alessandro Tognetti,Emanuele Lindo Secco,Gaetano Anania,Nicola Carbonaro,Danilo De Rossi,Giovanni Magenes
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977868
#%453123
#%3210940
#!
  
#*Integrating information from vision and touch: a neural network modeling study.
#@Elisa Magosso
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977741
#%1027912
#!
  
#*A real-time algorithm for predicting core temperature in humans.
#@Andrei V. Gribok,Mark J. Buller,Reed W. Hoyt,Jaques Reifman
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977762
#% 
#!
  
#*Parallel multiscale feature extraction and region growing: application in retinal blood vessel detection.
#@Miguel A. Palomera-Pérez,M. Elena Martínez-Pérez,Héctor Benítez-Pérez,Jorge Luis Ortega-Arjona
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977734
#%254117
#%360810
#%990130
#%1031975
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#!
  
#*Medical case retrieval from a committee of decision trees.
#@Gwénolé Quellec,Mathieu Lamard,Lynda Bekri,Guy Cazuguel,Christian Roux,Béatrice Cochener
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977735
#%140
#%2360
#%746412
#%759542
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#%952304
#%1009234
#%1009403
#%1033010
#%1063490
#!
  
#*A personalized framework for medication treatment management in chronic care.
#@Vassilis Koutkias,Ioanna Chouvarda,Andreas Triantafyllidis,Andigoni Malousi,Georgios D. Giaglis,Nicos Maglaveras
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977704
#%1012991
#%1179249
#%1207304
#%1346021
#!
  
#*A symbol-based approach to gait analysis from acceleration signals: identification and detection of gait events and a new measure of gait symmetry.
#@Anita Sant'Anna,Nicholas Wickström
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977706
#%808939
#!
  
#*Automatic detection of bioabsorbable coronary stents in IVUS images using a cascade of classifiers.
#@David Rotger,Petia Radeva,Nico Bruining
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977713
#%83546
#!
  
#*A body sensor network with electromyogram and inertial sensors: multimodal interpretation of muscular activities.
#@Hassan Ghasemzadeh,Roozbeh Jafari,Balakrishnan Prabhakaran
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977804
#%413045
#%985064
#%1032369
#%1032891
#%1279920
#!
  
#*PSKA: usable and secure key agreement scheme for body area networks.
#@Krishna K. Venkatasubramanian,Ayan Banerjee,Sandeep K. S. Gupta
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977691
#%484
#%83943
#%505778
#%692578
#%1310879
#%3105666
#!
  
#*Diagnosis of Cardiovascular Abnormalities From Compressed ECG: A Data Mining-Based Approach.
#@Fahim Sufi,Ibrahim Khalil
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977854
#% 
#!
  
#*Reliable Confidence Measures for Medical Diagnosis With Evolutionary Algorithms.
#@Antonis Lambrou,Harris Papadopoulos,Alexander Gammerman
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977861
#% 
#!
  
#*Noise-Assisted Data Processing With Empirical Mode Decomposition in Biomedical Signals.
#@Alexandros Karagiannis,Philip Constantinou
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977855
#% 
#!
  
#*A robust approach toward recognizing valid arterial-blood-pressure pulses.
#@Shadnaz Asgari,Marvin Bergsneider,Xiao Hu
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977811
#%959895
#%3002343
#!
  
#*PSSK modulation scheme for high-data rate implantable medical devices.
#@Jung-Yeol Oh,Jae-Hwan Kim,Hyung-Soo Lee,Jae-Young Kim
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977748
#% 
#!
  
#*Assessment of the risk factors of coronary heart events based on data mining with decision trees.
#@Minas A. Karaolis,Joseph A. Moutiris,Demetra Hadjipanayi,Constantinos S. Pattichis
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977684
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#%2333
#%2360
#%302882
#%681961
#%913172
#%1009707
#%1063665
#%1163919
#%623
#!
  
#*Rhythm of Life Aid (ROLA): An Integrated Sensor System for Supporting Medical Staff During Cardiopulmonary Resuscitation (CPR) of Newborn Infants.
#@W. Chen,Sidarto Bambang-Oetomo,Loe M. G. Feijs,P. Andriessen,F. Kimman,M. Geraets,M. Thielen
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977797
#%1310857
#%2783206
#%2992398
#!
  
#*Active devices based on organic semiconductors for wearable applications.
#@Massimo Barbaro,Alessandra Caboni,Piero Cosseddu,Giorgio Mattana,Annalisa Bonfiglio
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977728
#% 
#!
  
#*Effect of Posture Change on the Geometric Features of the Healthy Carotid Bifurcation.
#@Nicolas Aristokleous,Ioannis Seimenis,Yannis Papaharilaou,Georgios C. Georgiou,Brigitta C. Brott,Eleni Eracleous,Andreas S. Anayiotos
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977848
#% 
#!
  
#*Toward a personal health society in cardiology.
#@Jocelyne Fayn,Paul Rubel
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977777
#%2977707
#!
  
#*Detection of left ventricular motion abnormality via information measures and Bayesian filtering.
#@Kumaradevan Punithakumar,Ismail Ben Ayed,Ian G. Ross,Ali Islam,Jaron Chong,Shuo Li
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977729
#%498736
#%1031403
#%1273684
#!
  
#*Discrimination Power of Short-Term Heart Rate Variability Measures for CHF Assessment.
#@Leandro Pecchia,Paolo Melillo,Mario Sansone,Marcello Bracale
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977856
#% 
#!
  
#*A distributed, collaborative intelligent agent system approach for proactive postmarketing drug safety surveillance.
#@Yanqing Ji,Hao Ying,Margo S. Farber,John Yen,Peter Dews,Richard E. Miller,R. Michael Massanari
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977699
#%745153
#%911071
#%942663
#%3003382
#!
  
#*A mobile monitoring system of blood pressure for underserved in China by information and communication technology service.
#@Jiehui Jiang,Zhuangzhi Yan,Jun Shi,Prabhu Kandachar,Adinda Freudenthal
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977838
#%298733
#!
  
#*In-shoe plantar pressure measurement and analysis system based on fabric pressure sensing array.
#@Lin Shu,Tao Hua,Yangyong Wang,Qiao Li,David Dagan Feng,Xiaoming Tao
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977726
#%1341089
#!
  
#*A virtual laboratory for medical image analysis.
#@Sílvia D. Olabarriaga,Tristan Glatard,Piter T. de Boer
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977791
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#%80449
#%82638
#%82781
#%163138
#%196446
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#%876636
#%876623
#%877680
#%877642
#%1295345
#%1295360
#%2859732
#%2870021
#%83358
#!
  
#*Intensive Care Window: Real-Time Monitoring and Analysis in the Intensive Care Environment.
#@Nikolas Stylianides,Marios D. Dikaiakos,K. Harald Gjermundrød,George Panayi,Theodoros Kyprianou
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index2977862
#% 
#!
  
#*Segmentation of regions of interest in mammograms in a topographic approach.
#@Byung-Woo Hong,Bong-Soo Sohn
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977790
#%833776
#!
  
#*Time-frequency analysis of accelerometry data for detection of myoclonic seizures.
#@Tamara M. E. Nijsen,Ronald M. Aarts,Pierre J. M. Cluitmans,Paul A. M. Griep
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977740
#%1150382
#!
  
#*Temporal postural synergies of the hand in rapid grasping tasks.
#@Ramana Vinjamuri,Mingui Sun,Cheng-Chun Chang,Heung-No Lee,Robert J. Sclabassi,Zhi-Hong Mao
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977743
#%2870076
#!
  
#*A Multimodal interface device for online board games designed for sight-impaired people.
#@Nicholas Caporusso,Lusine Mkrtchyan,Leonardo Badia
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977698
#%1043306
#!
  
#*Intelligible support vector machines for diagnosis of diabetes mellitus.
#@Nahla H. Barakat,Andrew P. Bradley,Mohamed Nabil H. Barakat
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977834
#%105
#%2360
#%43756
#%335401
#%346057
#%760187
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#!
  
#*Guest editorial: special section on smart wearable devices for human health and protection.
#@Sergio Cerutti,Giovanni Magenes,Paolo Bonato
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977776
#% 
#!
  
#*Automatic classification of lymphoma images with transform-based global features.
#@Nikita Orlov,Wayne W. Chen,D. Mark Eckley,Tomasz J. Macura,Lior Shamir,Elaine S. Jaffe,Ilya G. Goldberg
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977782
#%760094
#%834962
#%835343
#%1030445
#%1032697
#%1045592
#%1046117
#%1046863
#%1226665
#%1284313
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#%2875453
#!
  
#*A review of noninvasive ultrasound image processing methods in the analysis of carotid plaque morphology for the assessment of stroke risk.
#@Efthyvoulos Kyriacou,Constantinos S. Pattichis,Marios S. Pattichis,Christos P. Loizou,Christodoulos S. Christodoulou,Stavros K. Kakkos,Andrew Nicolaides
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977719
#%755227
#%2931217
#!
  
#*Heartbeat-driven medium-access control for body sensor networks.
#@Huaming Li,Jindong Tan
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977678
#%584383
#%584350
#%584324
#%1065147
#!
  
#*Guest editorial: data mining in bioinformatics and biomedicine.
#@Xue-Wen Chen,Hamid R. Arabnia
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977755
#% 
#!
  
#*ICA based automatic segmentation of dynamic H2 O cardiac PET images.
#@Margarita Magadán-Méndez,Anu Juslin,Sergey V. Nesterov,Kari Kalliokoski,Juhani Knuuti,Ulla Ruotsalainen
#t2010
#cIEEE Transactions on Information Technology in Biomedicine
#index2977805
#% 
#!
  
#*Hemodynamic Flow Modeling Through an Abdominal Aorta Aneurysm Using Data Mining Tools.
#@Nenad Filipovic,Milos Ivanovic,Damjan Krstajic,Milos Kojic
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081359
#% 
#!
  
#*Leveraging Social System Networks in Ubiquitous High-Data-Rate Health Systems.
#@Tammara Massey,Gustavo Marfia,Adam Stoelting,Riccardo Tomasi,Maurizio A. Spirito,Majid Sarrafzadeh,Giovanni Pau
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081381
#% 
#!
  
#*Efficacy of Texture, Shape, and Intensity Feature Fusion for Posterior-Fossa Tumor Segmentation in MRI.
#@Shaheen Ahmed,Khan M. Iftekharuddin,A. Vossough
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081362
#% 
#!
  
#*A Hybrid Clustering Method for ROI Delineation in Small-Animal Dynamic PET Images: Application to the Automatic Estimation of FDG Input Functions.
#@X. Zheng,G. Tian,Sung-Cheng Huang,D. Feng
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081351
#% 
#!
  
#*Development of Red Blood Cell-Photon Simulator for Optical Propagation Analysis in Blood using Monte Carlo Method.
#@Shiori Oshima,Yoshiyuki Sankai
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081380
#% 
#!
  
#*Feature Selection for Accelerometer-Based Posture Analysis in Parkinson's Disease.
#@Luca Palmerini,Laura Rocchi,Sabato Mellone,Franco Valzania,Lorenzo Chiari
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081372
#% 
#!
  
#*Energy Efficiency and Reliability in Wireless Biomedical Implant Systems.
#@Jamshid Abouei,J. David Brown,Konstantinos N. Plataniotis,Subbarayan Pasupathy
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081367
#% 
#!
  
#*Genetic-Algorithm-Based Multiple Regression With Fuzzy Inference System for Detection of Nocturnal Hypoglycemic Episodes.
#@S. H. Ling,Hung T. Nguyen
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081348
#% 
#!
  
#*Apnea MedAssist: Real-time Sleep Apnea Monitor Using Single-Lead ECG.
#@Majdi Bsoul,Hlaing Minn,Lakshman Tamil
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081374
#% 
#!
  
#*Factors Affecting Acceptance of a Web-Based Self-Referral System.
#@Eung-Hun Kim,David T. Linker,Anil Coumar,Larry S. Dean,Frederick A. Matsen,Y. Kim
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081357
#% 
#!
  
#*Automated Diagnosis of Glaucoma Using Texture and Higher Order Spectra Features.
#@U. Rajendra Acharya,Sumeet Dua,Xian Du,Subbhuraam Vinitha Sree,Chua Kuang Chua
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081383
#% 
#!
  
#*Vessel Tree Segmentation in Presence of Interstitial Lung Disease in MDCT.
#@Panayiotis Korfiatis,Christina Kalogeropoulou,Anna Karahaliou,Alexandra Kazantzi,Lena Costaridou
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081364
#% 
#!
  
#*ISWLS: Novel Algorithm for Image Reconstruction in PET.
#@E. Karali,Sotiris Pavlopoulos,Sofia Lambropoulou,Dimitris Koutsouris
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081375
#% 
#!
  
#*Privilege Management Infrastructure for Virtual Organizations in Healthcare Grids.
#@Jorge Calvillo,Isabel Román,Sergio Rivas,Laura M. Roa
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081356
#% 
#!
  
#*Hybrid Genetic and Variational Expectation-Maximization Algorithm for Gaussian-Mixture-Model-Based Brain MR Image Segmentation.
#@Guangjian Tian,Yong Xia,Yanning Zhang,David Dagan Feng
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081382
#% 
#!
  
#*Automated Detection of Cell Nuclei in Pap Smear Images Using Morphological Reconstruction and Clustering.
#@Marina E. Plissiti,Christophoros Nikou,Antonia Charchanti
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081349
#% 
#!
  
#*Simulation of an Instrumental Childbirth for the Training of the Forceps Extraction: Control Algorithm and Evaluation.
#@Richard Moreau,Minh Tu Pham,Xavier Brun,Tanneguy Redarce,Olivier Dupuis
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081369
#% 
#!
  
#*A Medical-Grade Wireless Architecture for Remote Electrocardiography.
#@Kyungtae Kang,Kyung-Joon Park,Jae-Jin Song,C.-H. Yoon,Lui Sha
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081355
#% 
#!
  
#*Store-and-Feedforward Adaptive Gaming System for Hand-Finger Motion Tracking in Telerehabilitation.
#@Daniel Lockery,James F. Peters,Sheela Ramanna,Barbara L. Shay,Tony Szturm
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081376
#% 
#!
  
#*Addressing Mental Health Epidemic Among University Students via Web-based, Self-Screening, and Referral System: A Preliminary Study.
#@Eung-Hun Kim,Anil Coumar,W. B. Lober,Yongmin Kim
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081366
#% 
#!
  
#*Implementation Methodology for Interoperable Personal Health Devices With Low-Voltage Low-Power Constraints.
#@Miguel Martínez-Espronceda,Ignacio Martínez,Luis Serrano,Santiago Led,Jesús D. Trigo,Asier Marzo,Javier Escayola,José García
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081368
#% 
#!
  
#*Dynamic Composition of Semantic Pathways for Medical Computational Problem Solving by Means of Semantic Rules.
#@Charalampos Bratsas,Panagiotis D. Bamidis,Dionisis D. Kehagias,Evangelos Kaimakamis,Nicos Maglaveras
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081347
#% 
#!
  
#*Atherosclerotic Plaque Ultrasound Video Encoding, Wireless Transmission, and Quality Assessment Using H.264.
#@Andreas Panayides,Marios S. Pattichis,Constantinos S. Pattichis,Christos P. Loizou,Marios Pantziaris,Andreas Pitsillides
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081377
#% 
#!
  
#*Emergency Fall Incidents Detection in Assisted Living Environments Utilizing Motion, Sound, and Visual Perceptual Components.
#@Charalampos N. Doukas,Ilias Maglogiannis
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081361
#% 
#!
  
#*Salient Feature Region: A New Method for Retinal Image Registration.
#@Jian Zheng,Jie Tian,Kexin Deng,Xiaoqian Dai,Xing Zhang,Min Xu
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081354
#% 
#!
  
#*Fall Detection With Multiple Cameras: An Occlusion-Resistant Method Based on 3-D Silhouette Vertical Distribution.
#@Edouard Auvinet,Franck Multon,Alain Saint-Arnaud,Jacqueline Rousseau,Jean Meunier
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081358
#% 
#!
  
#*Automated Detection of White Matter Changes in Elderly People Using Fuzzy, Geostatistical, and Information Combining Models.
#@Tuan Duc Pham,Klaus Berger
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081363
#% 
#!
  
#*3-D Pain Drawings and Seating Pressure Maps: Relationships and Challenges.
#@Fotis Spyridonis,Gheorghita Ghinea
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081371
#% 
#!
  
#*Editorial Note on Biomedical and Health Informatics.
#@Yuan-Ting Zhang,Carmen C. Y. Poon
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081352
#% 
#!
  
#*A Potential Causal Association Mining Algorithm for Screening Adverse Drug Reactions in Postmarketing Surveillance.
#@Yanqing Ji,Hao Ying,Peter Dews,Ayman Mansour,John Tran,Richard E. Miller,R. Michael Massanari
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081378
#% 
#!
  
#*Distributed Intelligent Sensor Network for the Rehabilitation of Parkinson's Patients.
#@Hong Ying,Mario Schlösser,Andreas Schnitzer,Thorsten Schäfer,Marianne E. Schläfke,Steffen Leonhardt,Michael Schiek
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081360
#% 
#!
  
#*Detection of Abnormal Living Patterns for Elderly Living Alone Using Support Vector Data Description.
#@Jae Hyuk Shin,Boreom Lee,Kwang Suk Park
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081370
#% 
#!
  
#*Multiscale Amplitude-Modulation Frequency-Modulation (AM-FM) Texture Analysis of Ultrasound Images of the Intima and Media Layers of the Carotid Artery.
#@Christos P. Loizou,Víctor Murray,Marios S. Pattichis,Marios Pantziaris,Constantinos S. Pattichis
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081353
#% 
#!
  
#*Predicting Breast Screening Attendance Using Machine Learning Techniques.
#@Vikraman Baskaran,Aziz Guergachi,Rajeev K. Bali,Raouf N. Gorgui-Naguib
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081365
#% 
#!
  
#*Limb Movements Classification Using Wearable Wireless Transceivers.
#@Anda R. Guraliuc,Paolo Barsocchi,Francesco Potorti,Paolo Nepa
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081379
#% 
#!
  
#*An Ontology-Based System for Context-Aware and Configurable Services to Support Home-Based Continuous Care.
#@Federica Paganelli,Dino Giuli
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081350
#% 
#!
  
#*Investigating the Minimum Required Number of Genes for the Classification of Neuromuscular Disease Microarray Data.
#@Argiris Sakellariou,Despina Sanoudou,George M. Spyrou
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3081373
#% 
#!
  
#*Automated Delineation of Lung Tumors in PET Images Based on Monotonicity and a Tumor-Customized Criterion.
#@Cherry G. Ballangan,Xiuying Wang,Michael J. Fulham,Stefan Eberl,Yong Yin,David Dagan Feng
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157702
#% 
#!
  
#*A Novel Emotion Elicitation Index Using Frontal Brain Asymmetry for Enhanced EEG-Based Emotion Recognition.
#@Panagiotis Petrantonakis,Leontios J. Hadjileontiadis
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157685
#% 
#!
  
#*Guest Editorial Sensing and Computing in Wearable Robots.
#@Lorenzo Turicchia,G. Li
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157694
#% 
#!
  
#*Automatic Detection of Temporal Gait Parameters in Poststroke Individuals.
#@Paulo Lopez-Meyer,George D. Fulk,Edward Sazonov
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157690
#% 
#!
  
#*Interoperability of Medical Device Information and the Clinical Applications: An HL7 RMIM based on the ISO/IEEE 11073 DIM.
#@Mustafa Yuksel,Asuman Dogac
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157709
#% 
#!
  
#*Adaptive Beat-to-Beat Heart Rate Estimation in Ballistocardiograms.
#@Christoph Brüser,Kurt Stadlthanner,Stijn de Waele,Steffen Leonhardt
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157684
#% 
#!
  
#*Esophagus Silhouette Extraction and Reconstruction From Fluoroscopic Views for Cardiac Ablation Procedure Guidance.
#@Liron Yatziv,Julian Ibarz,Norbert Strobel,Saurabh Datta,Guillermo Sapiro
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157683
#% 
#!
  
#*Strengths and Weaknesses of 1.5T and 3T MRS Data in Brain Glioma Classification.
#@Michail M. Kounelakis,Ioannis N. Dimou,Michael M. Zervakis,I. I. Tsougos,E. E. Tsolaki,E. Kousi,E. E. Kapsalaki,K. K. Theodorou
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157689
#% 
#!
  
#*Toward Synergy-Based Brain-Machine Interfaces.
#@Ramana Vinjamuri,Douglas J. Weber,Zhi-Hong Mao,Jennifer L. Collinger,Alan D. Degenhart,John W. Kelly,MichaelL. Boninger,Elizabeth C. Tyler-Kabara,Wei Wang
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157707
#% 
#!
  
#*Real-Time Upper Limb Motion Estimation From Surface Electromyography and Joint Angular Velocities Using an Artificial Neural Network for Human-Machine Cooperation.
#@Suncheol Kwon,Jung Kim
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157679
#% 
#!
  
#*Vascular System Modeling in Parallel Environment - Distributed and Shared Memory Approaches.
#@Krzysztof Jurczuk,Marek Kretowski,Johanne Bézy-Wendling
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157701
#% 
#!
  
#*Generalizing Common Tasks in Automated Skin Lesion Diagnosis.
#@Paul Wighton,Tim K. Lee,Harvey Lui,David I. McLean,M. Stella Atkins
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157692
#% 
#!
  
#*Building an Index of Activity of Inhabitants From Their Activity on the Residential Electrical Power Line.
#@Norbert Noury,Marc Berenguer,Henri Teyssier,Marie-Jeanne Bouzid,Michel Giordani
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157678
#% 
#!
  
#*Developing a Wireless Implantable Body Sensor Network in MICS Band.
#@Qiang Fang,Shuenn-Yuh Lee,Hans Permana,Kamran Ghorbani,Irena Cosic
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157696
#% 
#!
  
#*IEEE 802.15.4 MAC With GTS Transmission for Heterogeneous Devices With Application to Wheelchair Body-Area Sensor Networks.
#@Bharat Shrestha,Ekram Hossain,Sergio Camorlinga
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157681
#% 
#!
  
#*Mobility Support for Health Monitoring at Home Using Wearable Sensors.
#@Sergio González-Valenzuela,Min Chen,Victor C. M. Leung
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157706
#% 
#!
  
#*A Wireless Implantable Sensor Network System for In Vivo Monitoring of Physiological Signals.
#@Xiuquan Fu,Weihong Chen,Shuming Ye,Yuewen Tu,Yawei Tang,Dingli Li,Hang Chen,Kai Jiang
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157703
#% 
#!
  
#*A Wearable, Wireless Gaze Tracker with Integrated Selection Command Source for Human-Computer Interaction.
#@Ville Rantanen,Toni Vanhala,Outi Tuisku,Pekka-Henrik Niemenlehto,Jarmo Verho,Veikko Surakka,Martti Juhola,Jukka Lekkala
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157704
#% 
#!
  
#*A Computer-Based Technique for Automated Spot Detection in Proteomics Images.
#@Eleftheria A. Mylona,Michalis A. Savelonas,Dimitris Maroulis,Sophia Kossida
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157677
#% 
#!
  
#*Brain-Muscle-Computer Interface: Mobile-Phone Prototype Development and Testing.
#@S. Vernon,S. S. Joshi
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157682
#% 
#!
  
#*A Learning-Based Similarity Fusion and Filtering Approach for Biomedical Image Retrieval Using SVM Classification and Relevance Feedback.
#@Md. Mahmudur Rahman,Sameer Antani,George R. Thoma
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157705
#% 
#!
  
#*Ubiquitous Human Upper-Limb Motion Estimation using Wearable Sensors.
#@Zhiqiang Zhang,Wai-Choong Wong,Jian-Kang Wu
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157676
#% 
#!
  
#*A Lesion-Specific Coronary Artery Calcium Quantification Framework for the Prediction of Cardiac Events.
#@Zhen Qian,Idean Marvasty,Sarah Rinehart,Szilard Voros
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157691
#% 
#!
  
#*Determining Level of Postural Control in Young Adults Using Force-Sensing Resistors.
#@Alpha Agape Gopalai,S. M. N. Arosha Senanayake,D. Gouwanda
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157697
#% 
#!
  
#*Synthesis of the 12-Lead Electrocardiogram From Differential Leads.
#@Roman Trobec,Ivan Tomasic
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157680
#% 
#!
  
#*A Novel Key Management Solution for Reinforcing Compliance With HIPAA Privacy/Security Regulations.
#@Chien-Ding Lee,Kevin I.-J. Ho,Wei-Bin Lee
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157687
#% 
#!
  
#*Motor Unit Number Reductions in Paretic Muscles of Stroke Survivors.
#@Xiaoyan Li,Ying-Chih Wang,Nina L. Suresh,William Zev Rymer,Ping Zhou
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157675
#% 
#!
  
#*Mobile Social Network Services for Families With Children With Developmental Disabilities.
#@Li-Der Chou,Nien-Hwa Lai,Yao-Jen Chen,Yao-Jen Chang,Jyun-Yan Yang,Lien-Fu Huang,Wen-Ling Chiang,Hung-Yi Chiu,Haw-Yun Shin
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157688
#% 
#!
  
#*Quantitative and Comparative Assessment of Learning in a Tongue-Operated Computer Input Device.
#@Behnaz Yousefi,Xueliang Huo,Emir Veledar,Maysam Ghovanloo
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157698
#% 
#!
  
#*Nonrigid Image Registration Using an Entropic Similarity.
#@Mohammed Khader,A. Ben Hamza
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157700
#% 
#!
  
#*Monitoring and Evaluation of Blood Pressure Changes With a Home Healthcare System.
#@Toshiyo Tamura,Isao Mizukura,Masaki Sekine,Y. Kimura
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157693
#% 
#!
  
#*Unobtrusive Assessment of Motor Patterns During Sleep Based on Mattress Indentation Measurements.
#@Vincent Verhaert,Bart Haex,Tom De Wilde,Daniel Berckmans,Marie Vandekerckhove,Johan Verbraecken,Jos Vander Sloten
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157686
#% 
#!
  
#*Geometric Calibration of a Micro-CT System and Performance for Insect Imaging.
#@Zhanli Hu,Jianbao Gui,Jing Zou,Junyan Rong,Qiyang Zhang,Hairong Zheng,Dan Xia
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157699
#% 
#!
  
#*Measuring and Reflecting Depth of Anesthesia Using Wavelet and Power Spectral Density.
#@Tai Nguyen-Ky,Peng (Paul) Wen,Yan Li,R. Gray
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157695
#% 
#!
  
#*Revisiting Intensity-Based Image Registration Applied to Mammography.
#@Yago Diez,Arnau Oliver,Xavier Lladó,Jordi Freixenet,Joan Martí,Joan Carles Vilanova,Robert Marti
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157674
#% 
#!
  
#*Colon Segmentation for Prepless Virtual Colonoscopy.
#@Vahid Taimouri,Xin Liu,Zhaoqiang Lai,Chang Liu,Darshan Pai,Jing Hua
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3157708
#% 
#!
  
#*Rapid Assessment of Cardiac Contractility on a Home Bathroom Scale.
#@Mozziyar Etemadi,Omer T. Inan,Laurent Giovangrandi,Gregory T. A. Kovacs
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266662
#% 
#!
  
#*Electromagnetic Interference of Cardiac Rhythmic Monitoring Devices to Radio Frequency Identification: Analytical Analysis and Mitigation Methodology.
#@Ajay Ogirala,Joshua R. Stachel,Marlin H. Mickle
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266661
#% 
#!
  
#*A Modified Binary Particle Swarm Optimization for Selecting the Small Subset of Informative Genes From Gene Expression Data.
#@Mohd Saberi Mohamad,Sigeru Omatu,Safaai Deris,Michifumi Yoshioka
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266655
#% 
#!
  
#*EEG Signal Description with Spectral-Envelope-Based Speech Recognition Features for Detection of Neonatal Seizures.
#@Andrey Temko,Climent Nadeu,William P. Marnane,Geraldine B. Boylan,Gordon Lightbody
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266666
#% 
#!
  
#*Fisher-Tippett Region-Merging Approach to Transrectal Ultrasound Prostate Lesion Segmentation.
#@Alexander Wong,Jacob Scharcanski
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266656
#% 
#!
  
#*Electromagnetic Interference-Aware Transmission Scheduling and Power Control for Dynamic Wireless Access in Hospital Environments.
#@Phond Phunchongharn,Ekram Hossain,Sergio Camorlinga
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266660
#% 
#!
  
#*Automatic Skin Lesion Segmentation via Iterative Stochastic Region Merging.
#@Alexander Wong,Jacob Scharcanski,Paul W. Fieguth
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266653
#% 
#!
  
#*Optimized Weighted Performance Index for Objective Evaluation of Border-Detection Methods in Dermoscopy Images.
#@Rahil Garnavi,Mohammad Aldeen
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266665
#% 
#!
  
#*Agent-Based Modeling of the Spread of Influenza-Like Illness in an Emergency Department: A Simulation Study.
#@Marek Laskowski,Bryan C. P. Demianyk,Julia Witt,Shamir Mukhi,Marcia R. Friesen,Robert D. McLeod
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266652
#% 
#!
  
#*Quasi-Static Modeling of Human Limb for Intra-Body Communications With Experiments.
#@Sio-hang Pun,Yue-ming Gao,Peng-un Mak,Mang-i Vai,Min Du
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266664
#% 
#!
  
#*Nonlinear Unsharp Masking for Mammogram Enhancement.
#@Karen Panetta,Yicong Zhou,Sos S. Agaian,Hongwei Jia
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266659
#% 
#!
  
#*A Channel Differential EZW Coding Scheme for EEG Data Compression.
#@Vahid R. Dehkordi,Hoda Daou,Fabrice Labeau
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266663
#% 
#!
  
#*Development and Evaluation of Multilead Wavelet-Based ECG Delineation Algorithms for Embedded Wireless Sensor Nodes.
#@Francisco J. Rincón,Joaquín Recas,Nadia Khaled,David Atienza
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266658
#% 
#!
  
#*Data Mining to Generate Adverse Drug Events Detection Rules.
#@Emmanuel Chazard,Grégoire Ficheur,Stéphanie Bernonville,Michel Luyckx,Régis Beuscart
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266654
#% 
#!
  
#*Multi-platform Data Integration in Microarray Analysis.
#@Georgia Tsiliki,Michalis E. Zervakis,Marina Ioannou,Elias Sanidas,Efstathios Stathopoulos,George Potamias,Manolis Tsiknakis,Dimitris Kafetzopoulos
#t2011
#cIEEE Transactions on Information Technology in Biomedicine
#index3266657
#% 
#!
  
#*Video Distribution Techniques Over WiMAX Networks for m-Health Applications.
#@Garik Markarian,Lyudmila Mihaylova,Dmitry V. Tsitserov,Anna Zvikhachevskaya
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319202
#% 
#!
  
#*A Reliable Transmission Protocol for ZigBee-Based Wireless Patient Monitoring.
#@Shyr-Kuen Chen,Tsair Kao,Chia-Tai Chan,Chih-Ning Huang,Chih-Yen Chiang,Chin-Yu Lai,Tse-Hua Tung,Pi-Chung Wang
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319187
#% 
#!
  
#*A Smart Health Monitoring Chair for Nonintrusive Measurement of Biological Signals.
#@Hyun Jae Baek,Gih Sung Chung,Ko Keun Kim,Kwang Suk Park
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319194
#% 
#!
  
#*Wavelet-Based Energy Features for Glaucomatous Image Classification.
#@Sumeet Dua,U. Rajendra Acharya,Pradeep Chowriappa,Subbhuraam Vinitha Sree
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319199
#% 
#!
  
#*Cross-Layer Ultrasound Video Streaming Over Mobile WiMAX and HSUPA Networks.
#@Ali Alinejad,Nada Y. Philip,Robert S. H. Istepanian
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319193
#% 
#!
  
#*Analysis of Using Interpulse Intervals to Generate 128-Bit Biometric Random Binary Sequences for Securing Wireless Body Sensor Networks.
#@Guang-He Zhang,Carmen C. Y. Poon,Yuan-Ting Zhang
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319188
#% 
#!
  
#*Study of Attenuation and Dispersion Through the Skin in Intrabody Communications Systems.
#@M. Amparo Callejon,Laura M. Roa,Javier Reina-Tosina,David Naranjo-Hernández
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319200
#% 
#!
  
#*Guest Editorial Introduction to the Special Section: 4G Health - The Long-Term Evolution of m-Health.
#@Robert S. H. Istepanaian,Y.-T. Zhang
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319192
#% 
#!
  
#*Detection and Analysis of Transitional Activity in Manifold Space.
#@Raza Ali,Louis Atallah,Benny Lo,Guang-Zhong Yang
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319189
#% 
#!
  
#*Cardiovascular Modeling of Congenital Heart Disease Based on Neonatal Echocardiographic Images.
#@Megumi Nakao,Kazuma Maeda,Ryo Haraguchi,Ken-ichi Kurosaki,Koji Kagisaki,Isao Shiraishi,Kazuo Nakazawa,Kotaro Minato
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319182
#% 
#!
  
#*Mobile Medical Visual Information Retrieval.
#@Adrien Depeursinge,Samuel Duc,Ivan Eggel,Henning Müller
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319197
#% 
#!
  
#*Application of Evolutionary Fuzzy Cognitive Maps for Prediction of Pulmonary Infections.
#@Elpiniki I. Papageorgiou,Wojciech Froelich
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319191
#% 
#!
  
#*Wireless Capsule Endoscopy Video Segmentation Using an Unsupervised Learning Approach Based on Probabilistic Latent Semantic Analysis With Scale Invariant Features.
#@Yao Shen,Parthasarathy Guturu,Bill P. Buckles
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319203
#% 
#!
  
#*Compensation of Sound Speed Deviations in 3-D B-Mode Ultrasound for Intraoperative Determination of the Anterior Pelvic Plane.
#@Steffen Schumann,Lutz-Peter Nolte,Guoyan Zheng
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3319195
#% 
#!
  
#*SparkMed: A Framework for Dynamic Integration of Multimedia Medical Data Into Distributed m-Health Systems.
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#!
  
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#*Abnormality Segmentation in Brain Images Via Distributed Estimation.
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#*Semantic Image Retrieval in Magnetic Resonance Brain Volumes.
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#*Context-Based Electronic Health Record: Toward Patient Specific Healthcare.
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#*A Review on Digital ECG Formats and the Relationships Between Them.
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#*Contextualized Access to Electronical Health Records in Cardiology.
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#*Numerical Characterization and Modeling of Subject-Specific Ultrawideband Body-Centric Radio Channels and Systems for Healthcare Applications.
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#*Ultrasound Beamforming Using Compressed Data.
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#*In-Depth Analysis and Evaluation of Diffusive Glioma Models.
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#!
  
#*NeuroGlasses: A Neural Sensing Healthcare System for 3-D Vision Technology.
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#*SEMPATH Ontology: Modeling Multidisciplinary Treatment Schemes Utilizing Semantics.
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#*Experimental Study of a Hybrid Microwave Radiometry - Hyperthermia Apparatus With the Use of an Anatomical Head Phantom.
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#*Toward Semantic Interoperability of Electronic Health Records.
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#*Tumor Recognition in Wireless Capsule Endoscopy Images Using Textural Features and SVM-Based Feature Selection.
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#!
  
#*Rhythmogram-Based Analysis for Continuous Electrographic Data of the Human Brain.
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#*Anonymization of Longitudinal Electronic Medical Records.
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#*Evolutionary Approach to Development of Collaborative Teleconsultation System for Imaging Medicine.
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#*Noncontact Millimeter-Wave Real-Time Detection and Tracking of Heart Rate on an Ambulatory Subject.
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#*ReTrust: Attack-Resistant and Lightweight Trust Management for Medical Sensor Networks.
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#*A Joint Encryption/Watermarking System for Verifying the Reliability of Medical Images.
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#*Fast Localization and Segmentation of Optic Disk in Retinal Images Using Directional Matched Filtering and Level Sets.
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#*An Adapted Optical Flow Algorithm for Robust Quantification of Cardiac Wall Motion From Standard Cine-MR Examinations.
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#@Oberdan Parodi,Themis P. Exarchos,Paolo Marraccini,Federico Vozzi,Zarko Milosevic,Dalibor Nikolic,Antonis I. Sakellarios,Panagiotis K. Siogkas,Dimitrios I. Fotiadis,Nenad Filipovic
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#*Guest EditorialCardiovascular Health Informatics: Risk Screening and Intervention.
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#% 
#!
  
#*Optimizing Medical Data Quality Based on Multiagent Web Service Framework.
#@Ching-Seh Wu,Ibrahim Khoury,Hemant Shah
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3478655
#% 
#!
  
#*Investigation on Cardiovascular Risk Prediction Using Genetic Information.
#@Li-Na Pu,Ze Zhao,Yuan-Ting Zhang
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3478646
#% 
#!
  
#*Automatic Segmentation of Coronary Arteries in CT Imaging in the Presence of Kissing Vessel Artifacts.
#@Yin Wang,Panos Liatsis
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3478652
#% 
#!
  
#*Understanding Clinical Work Practices for Cross-Boundary Decision Support in e-Health.
#@Hissam Tawfik,Obinna Anya,Atulya K. Nagar
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3478640
#% 
#!
  
#*An Integrated Healthcare System for Personalized Chronic Disease Care in Home-Hospital Environments.
#@Sangjin Jeong,Chan-Hyun Youn,Eun Bo Shim,Moonjung Kim,Young Min Cho,Li-Mei Peng
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3478654
#% 
#!
  
#*An Incremental Learning Method Based on Probabilistic Neural Networks and Adjustable Fuzzy Clustering for Human Activity Recognition by Using Wearable Sensors.
#@Zhelong Wang,Ming Jiang,Yaohua Hu,Hongyi Li
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3478660
#% 
#!
  
#*A Serious Game for Learning Ultrasound-Guided Needle Placement Skills.
#@Wing-Yin Chan,Jing Qin,Yim-Pan Chui,Pheng-Ann Heng
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595101
#% 
#!
  
#*Optical Tracking-Based Model Surgery for Orthognathic Surgical Planning Using a Quantifying Evaluation Method.
#@Tai-Hong Kuo,Tung-Yiu Wong,Tung-Chin Wu,Jing-Jing Fang
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595104
#% 
#!
  
#*An Examination of the Motor Unit Number Index (MUNIX) in Muscles Paralyzed by Spinal Cord Injury.
#@Xiaoyan Li,Faezeh Jahanmiri-Nezhad,William Zev Rymer,Ping Zhou
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595100
#% 
#!
  
#*Increasing the Signal-to-Noise Ratio by Using Vertically Stacked Phased Array Coils for Low-Field Magnetic Resonance Imaging.
#@Dandan Liang,Hon Tat Hui,Tat Soon Yeo
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595121
#% 
#!
  
#*Enhancement of Initial Equivalency for Protein Structure Alignment Based on Encoded Local Structures.
#@Kenneth Hung,Jui-Chih Wang,Cheng-Wei Chen,Cheng-Long Chuang,Kun-Nan Tsai,Chung-Ming Chen
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595110
#% 
#!
  
#*System Identification and Closed-Loop Control of End-Tidal CO in Mechanically Ventilated Patients.
#@Jin-Oh Hahn,Guy A. Dumont,J. Mark Ansermino
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595111
#% 
#!
  
#*Cross-Layer Design for Optimized Region of Interest of Ultrasound Video Data Over Mobile WiMAX.
#@Carl James Debono,Brian Walter Micallef,Nada Y. Philip,Ali Alinejad,Robert S. H. Istepanian,Nazar N. Amso
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595105
#% 
#!
  
#*A Resource-Efficient Planning for Pressure Ulcer Prevention.
#@Sarah Ostadabbas,Rasoul Yousefi,Mehrdad Nourani,Miad Faezipour,Lakshman Tamil,Matthew Pompeo
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595118
#% 
#!
  
#*Guest EditorialMultimedia Services and Technologies for E-Health (MUST-EH).
#@M. Shamim Hossain,Stefan Goebel,Abdulmotaleb El-Saddik
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595106
#% 
#!
  
#*Blind Integrity Verification of Medical Images.
#@Hui Huang,Gouenou Coatrieux,Huazhong Shu,Limin Luo,Christian Roux
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595127
#% 
#!
  
#*A Knowledge Editing Service for Multisource Data Management in Remote Health Monitoring.
#@Sara Colantonio,Massimo Esposito,Massimo Martinelli,Giuseppe De Pietro,Ovidio Salvetti
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595123
#% 
#!
  
#*Knowledge Discovery in Medical Systems Using Differential Diagnosis, LAMSTAR, and k-NN.
#@Rahul Isola,Rebeck Carvalho,Amiya Kumar Tripathy
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595094
#% 
#!
  
#*A Feasibility Study of Enhancing Independent Task Performance for People with Cognitive Impairments Through the Use of a Handheld Location-Based Prompting System.
#@Yao-Jen Chang,Shu-Fang Chen,Li-Der Chou
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595117
#% 
#!
  
#*Embedded Ubiquitous Services on Hospital Information Systems.
#@Tomohiro Kuroda,Hiroshi Sasaki,Takatoshi Suenaga,Yasushi Masuda,Yoshihiro Yasumuro,Kenta Hori,Naoki Ohboshi,Tadamasa Takemura,Kunihiro Chihara,Hiroyuki Yoshihara
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595092
#% 
#!
  
#*Equipment Location in Hospitals Using RFID-Based Positioning System.
#@Ali Asghar Nazari Shirehjini,Abdulsalam Yassine,Shervin Shirmohammadi
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595095
#% 
#!
  
#*Implantable Ultralow Pulmonary Pressure Monitoring System for Fetal Surgery.
#@Mozziyar Etemadi,J. Alex Heller,Samuel C. Schecter,Eveline H. Shue,Doug Miniati,Shuvo Roy
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595093
#% 
#!
  
#*A Service-Oriented Distributed Semantic Mediator: Integrating Multiscale Biomedical Information.
#@Oscar Mora,Gerhard Engelbrecht,Jesus Bisbal
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595107
#% 
#!
  
#*Virtual Caregiver: An Ambient-Aware Elderly Monitoring System.
#@M. Anwar Hossain,Dewan Tanvir Ahmed
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595120
#% 
#!
  
#*Multiparametric Decision Support System for the Prediction of Oral Cancer Reoccurrence.
#@Costas P. Exarchos,Yorgos Goletsis,Dimitrios I. Fotiadis
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595116
#% 
#!
  
#*Categorization and Segmentation of Intestinal Content Frames for Wireless Capsule Endoscopy.
#@Santi Seguí,Michal Drozdzal,Fernando Vilari?o,Carolina Malagelada,Fernando Azpiroz,Petia Radeva,Jordi Vitrià
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595108
#% 
#!
  
#*Computer-Aided Diagnosis of Melanoma Using Border- and Wavelet-Based Texture Analysis.
#@Rahil Garnavi,Mohammad Aldeen,James Bailey
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595128
#% 
#!
  
#*Prostate Cancer Localization Using Multiparametric MRI based on Semisupervised Techniques With Automated Seed Initialization.
#@Yusuf Artan,Imam Samil Yetik
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595090
#% 
#!
  
#*Image Analysis and Length Estimation of Biomolecules Using AFM.
#@Andrew Sundstrom,Silvio Cirrone,Salvatore Paxia,Carlin Hsueh,Rachel Kjolby,James K. Gimzewski,Jason Reed,Bud Mishra
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595097
#% 
#!
  
#*Classification of Seizure and Nonseizure EEG Signals Using Empirical Mode Decomposition.
#@Varun Bajaj,Ram Bilas Pachori
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595114
#% 
#!
  
#*ECG-Cryptography and Authentication in Body Area Networks.
#@Zhaoyang Zhang,Honggang Wang,Athanasios V. Vasilakos,Hua Fang
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595115
#% 
#!
  
#*Evaluation of Thermal and Nonthermal Effects of UHF RFID Exposure on Biological Drugs.
#@Giovanni Calcagnini,Federica Censi,Michele Maffia,Luca Mainetti,Eugenio Mattei,Luigi Patrono,Emanuela Urso
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595091
#% 
#!
  
#*Accurate Coronary Centerline Extraction, Caliber Estimation, and Catheter Detection in Angiographies.
#@Antonio Hernández-Vela,Carlo Gatta,Sergio Escalera,Laura Igual,Victoria Martin-Yuste,Manel Sabate,Petia Radeva
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595109
#% 
#!
  
#*Editorial: From "Information Technology in Biomedicine" to "Biomedical and Health Informatics".
#@Yuan-Ting Zhang,Carmen C. Y. Poon,Emma MacPherson
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595122
#% 
#!
  
#*WiiPD - Objective Home Assessment of Parkinson's Disease Using the Nintendo Wii Remote.
#@Jonathan Synnott,Liming Chen,Chris D. Nugent,George Moore
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595096
#% 
#!
  
#*Distributed System for Cognitive Stimulation Over Interactive TV.
#@Carolina García Vázquez,Esther Moreno Martínez,Miguel ángel Valero Duboy,Ana Gómez Oliva
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595099
#% 
#!
  
#*3-D Streaming Supplying Partner Protocols for Mobile Collaborative Exergaming for Health.
#@Haifa Raja Maamar,Azzedine Boukerche,Emil M. Petriu
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595125
#% 
#!
  
#*An Intelligent Scoring System and Its Application to Cardiac Arrest Prediction.
#@Nan Liu,Zhiping Lin,Jiuwen Cao,Zhixiong Koh,Tongtong Zhang,Guang-Bin Huang,Wee Ser,Marcus Eng Hock Ong
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595102
#% 
#!
  
#*Bio-Patch Design and Implementation Based on a Low-Power System-on-Chip and Paper-Based Inkjet Printing Technology.
#@Geng Yang,Li Xie,Matti M?ntysalo,Jian Chen,Hannu Tenhunen,Li-Rong Zheng
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595113
#% 
#!
  
#*Real-Time Mandibular Angle Reduction Surgical Simulation With Haptic Rendering.
#@Qiong Wang,Hui Chen,Wen Wu,Hai-yang Jin,Pheng-Ann Heng
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595119
#% 
#!
  
#*A Distributed Trust Evaluation Model and Its Application Scenarios for Medical Sensor Networks.
#@Daojing He,Chun Chen,Sammy Chan,Jiajun Bu,Athanasios V. Vasilakos
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595124
#% 
#!
  
#*A Two-Class Approach to the Detection of Physiological Deterioration in Patient Vital Signs, With Clinical Label Refinement.
#@Sara Khalid,David A. Clifton,Lei A. Clifton,Lionel Tarassenko
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595098
#% 
#!
  
#*Fuzzy Logic-Based Prognostic Score for Outcome Prediction in Esophageal Cancer.
#@Chang-Yu Wang,Tsair-Fwu Lee,Chun-Hsiung Fang,Jyh-Horng Chou
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595126
#% 
#!
  
#*A Posture Recognition-Based Fall Detection System for Monitoring an Elderly Person in a Smart Home Environment.
#@Miao Yu,Adel Rhuma,Syed Mohsen Naqvi,Liang Wang,Jonathon A. Chambers
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595112
#% 
#!
  
#*Irregular Breathing Classification From Multiple Patient Datasets Using Neural Networks.
#@Suk-Jin Lee,Yuichi Motai,Elisabeth Weiss,Shumei S. Sun
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595103
#% 
#!
  
#*Data Interoperability and Multimedia Content Management in e-Health Systems.
#@Mehedi Masud,M. Shamim Hossain,Atif Alamri
#t2012
#cIEEE Transactions on Information Technology in Biomedicine
#index3595089
#% 
#!
  
#*Real-time MR diffusion tensor and Q-ball imaging using Kalman filtering.
#@Cyril Poupon,Alexis Roche,Jessica Dubois,Jean-François Mangin,Fabrice Poupon
#t2008
#cMedical Image Analysis
#index3097900
#% 
#!
  
#*Automatic shape model building based on principal geodesic analysis bootstrapping.
#@Erik B. Dam,P. Thomas Fletcher,Stephen M. Pizer
#t2008
#cMedical Image Analysis
#index3097863
#% 
#!
  
#*A unified framework for clustering and quantitative analysis of white matter fiber tracts.
#@Mahnaz Maddah,W. Eric L. Grimson,Simon K. Warfield,William M. Wells III
#t2008
#cMedical Image Analysis
#index3097904
#% 
#!
  
#*Adaptive correction of the pseudo-enhancement of CT attenuation for fecal-tagging CT colonography.
#@Janne Näppi,Hiroyuki Yoshida
#t2008
#cMedical Image Analysis
#index3097885
#% 
#!
  
#*Regions, systems, and the brain: Hierarchical measures of functional integration in fMRI.
#@Guillaume Marrelec,Pierre Bellec,Alexandre Krainik,Hugues Duffau,Mélanie Pélégrini-Issac,Stéphane Lehericy,Habib Benali,Julien Doyon
#t2008
#cMedical Image Analysis
#index3097890
#% 
#!
  
#*Geometrical analysis of registration errors in point-based rigid-body registration using invariants.
#@Reuben R. Shamir,Leo Joskowicz
#t2011
#cMedical Image Analysis
#index3097851
#% 
#!
  
#*An efficient locally affine framework for the smooth registration of anatomical structures.
#@Olivier Commowick,Vincent Arsigny,A. Isambert,J. Costa,F. Dhermain,F. Bidault,Pierre-Yves Bondiau,Nicholas Ayache,Grégoire Malandain
#t2008
#cMedical Image Analysis
#index3097856
#% 
#!
  
#*Homeomorphic brain image segmentation with topological and statistical atlases.
#@Pierre-Louis Bazin,Dzung L. Pham
#t2008
#cMedical Image Analysis
#index3097870
#% 
#!
  
#*Inter-subject comparison of MRI knee cartilage thickness.
#@Julio Carballido-Gamio,Jan S. Bauer,Robert Stahl,Keh-Yang Lee,Stefanie Krause,Thomas M. Link,Sharmila Majumdar
#t2008
#cMedical Image Analysis
#index3097879
#% 
#!
  
#*Information Processing in Medical Imaging 2007.
#@Boudewijn P. F. Lelieveldt,Nico Karssemeijer
#t2008
#cMedical Image Analysis
#index3097861
#% 
#!
  
#*A curvelet-based patient-specific prior for accurate multi-modal brain image rigid registration.
#@Moti Freiman,M. Werman,Leo Joskowicz
#t2011
#cMedical Image Analysis
#index3097833
#% 
#!
  
#*Robust statistical shape models for MRI bone segmentation in presence of small field of view.
#@Jérôme Schmid,Jinman Kim,Nadia Magnenat-Thalmann
#t2011
#cMedical Image Analysis
#index3097846
#% 
#!
  
#*Performance evaluation of a medical robotic 3D-ultrasound imaging system.
#@Marie-Ange Janvier,Louis-Gilles Durand,Marie-Hélène Roy Cardinal,Isabelle Renaud,Boris Chayer,Pascal Bigras,Jacques A. de Guise,Gilles Soulez,Guy Cloutier
#t2008
#cMedical Image Analysis
#index3097874
#% 
#!
  
#*Towards a validation of atlas warping techniques.
#@M. Mallar Chakravarty,Abbas F. Sadikot,Jürgen Germann,Gilles Bertrand,D. Louis Collins
#t2008
#cMedical Image Analysis
#index3097869
#% 
#!
  
#*Semi-automatic segmentation for prostate interventions.
#@Seyedeh Sara Mahdavi,Nick Chng,Ingrid Spadinger,William J. Morris,Septimiu E. Salcudean
#t2011
#cMedical Image Analysis
#index3097852
#% 
#!
  
#*Instantiation and registration of statistical shape models of the femur and pelvis using 3D ultrasound imaging.
#@Dean C. Barratt,Carolyn S. K. Chan,Philip J. Edwards,Graeme P. Penney,Mike Slomczykowski,Timothy J. Carter,David J. Hawkes
#t2008
#cMedical Image Analysis
#index3097892
#% 
#!
  
#*Maximum distance-gradient for robust image registration.
#@Rui Gan,Albert C. S. Chung,Shu Liao
#t2008
#cMedical Image Analysis
#index3097868
#% 
#!
  
#*Registration-based estimates of local lung tissue expansion compared to xenon CT measures of specific ventilation.
#@Joseph M. Reinhardt,Kai Ding,Kunlin Cao,Gary E. Christensen,Eric A. Hoffman,Shalmali V. Bodas
#t2008
#cMedical Image Analysis
#index3097854
#% 
#!
  
#*A non-rigid registration method for serial lower extremity hybrid SPECT/CT imaging.
#@Jung W. Suh,Dustin Scheinost,Donald P. Dione,Lawrence W. Dobrucki,Albert J. Sinusas,Xenophon Papademetris
#t2011
#cMedical Image Analysis
#index3097834
#% 
#!
  
#*Dense feature deformation morphometry: Incorporating DTI data into conventional MRI morphometry.
#@Colin Studholme
#t2008
#cMedical Image Analysis
#index3097880
#% 
#!
  
#*Evaluating intensity normalization on MRIs of human brain with multiple sclerosis.
#@Mohak Shah,Yiming Xiao,Nagesh Subbanna,Simon J. Francis,Douglas L. Arnold,D. Louis Collins,Tal Arbel
#t2011
#cMedical Image Analysis
#index3097845
#% 
#!
  
#*Efficient and generalizable statistical models of shape and appearance for analysis of cardiac MRI.
#@Alexander Andreopoulos,John K. Tsotsos
#t2008
#cMedical Image Analysis
#index3097891
#% 
#!
  
#*A method for vector displacement estimation with ultrasound imaging and its application for thyroid nodular disease.
#@Adrian Basarab,Hervé Liebgott,Fabrice Morestin,Andrej Lyshchik,Tatsuya Higashi,Ryo Asato,Philippe Delachartre
#t2008
#cMedical Image Analysis
#index3097862
#% 
#!
  
#*Robust parametrization of brain surface meshes.
#@Frithjof Kruggel
#t2008
#cMedical Image Analysis
#index3097873
#% 
#!
  
#*Segmentation and reconstruction of vascular structures for 3D real-time simulation.
#@Xunlei Wu,Vincent Luboz,Karl Krissian,Stephane Cotin,Steven Dawson
#t2011
#cMedical Image Analysis
#index3097844
#% 
#!
  
#*In vivo mechanical characterization of human liver.
#@Alessandro Nava,Edoardo Mazza,M. Furrer,P. Villiger,W. H. Reinhart
#t2008
#cMedical Image Analysis
#index3097882
#% 
#!
  
#*3D Gabor wavelets for evaluating SPM normalization algorithm.
#@LinLin Shen,Li Bai
#t2008
#cMedical Image Analysis
#index3097894
#% 
#!
  
#*Motion tracking of the outer tips of microtubules.
#@Stathis Hadjidemetriou,Derek Toomre,James S. Duncan
#t2008
#cMedical Image Analysis
#index3097860
#% 
#!
  
#*A geometric flow for segmenting vasculature in proton-density weighted MRI.
#@Maxime Descoteaux,D. Louis Collins,Kaleem Siddiqi
#t2008
#cMedical Image Analysis
#index3097872
#% 
#!
  
#*A magnetic resonance spectroscopy driven initialization scheme for active shape model based prostate segmentation.
#@Robert Toth,Pallavi Tiwari,Mark Rosen,Galen Reed,John Kurhanewicz,Arjun Kalyanpur,Sona Pungavkar,Anant Madabhushi
#t2011
#cMedical Image Analysis
#index3097853
#% 
#!
  
#*The Third International Workshop on Biomedical Image Registration - WBIR 2006.
#@Bostjan Likar,Josien P. W. Pluim
#t2008
#cMedical Image Analysis
#index3097859
#% 
#!
  
#*Semi-automatic construction of reference standards for evaluation of image registration.
#@Keelin Murphy,Bram van Ginneken,Stefan Klein,Marius Staring,Bartjan de Hoop,Max A. Viergever,Josien P. W. Pluim
#t2011
#cMedical Image Analysis
#index3097843
#% 
#!
  
#*Using nonlinear diffusion and mean shift to detect and connect cross-sections of axons in 3D optical microscopy images.
#@Hongmin Cai,Xiaoyin Xu,Ju Lu,Jeff Lichtman,S. P. Yung,Stephen T. C. Wong
#t2008
#cMedical Image Analysis
#index3097881
#% 
#!
  
#*2-D registration and 3-D shape inference of the retinal fundus from fluorescein images.
#@Tae Eun Choe,Gérard G. Medioni,Isaac Cohen,Alexander C. Walsh,SriniVas R. Sadda
#t2008
#cMedical Image Analysis
#index3097871
#% 
#!
  
#*Area-preserving flattening maps of 3D ultrasound carotid arteries images.
#@Bernard Chiu,Micaela Egger,David J. Spence,Grace Parraga,Aaron Fenster
#t2008
#cMedical Image Analysis
#index3097867
#% 
#!
  
#*A protocol for evaluation of similarity measures for non-rigid registration.
#@Darko Skerl,Bostjan Likar,Franjo Pernus
#t2008
#cMedical Image Analysis
#index3097875
#% 
#!
  
#*Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering.
#@Ihor Smal,Erik H. W. Meijering,Katharina Draegestein,Niels Galjart,Ilya Grigoriev,A. Akhmanova,M. E. van Royen,Adriaan B. Houtsmuller,Wiro J. Niessen
#t2008
#cMedical Image Analysis
#index3097884
#% 
#!
  
#*Colon polyp detection using smoothed shape operators: Preliminary results.
#@Padma Sundaram,Afra Zomorodian,Christopher F. Beaulieu,Sandy Napel
#t2008
#cMedical Image Analysis
#index3097857
#% 
#!
  
#*Preventing facial recognition when rendering MR images of the head in three dimensions.
#@François Budin,Donglin Zeng,Arpita Ghosh,Elizabeth Bullitt
#t2008
#cMedical Image Analysis
#index3097901
#% 
#!
  
#*A wavelet-based regularized reconstruction algorithm for SENSE parallel MRI with applications to neuroimaging.
#@Lotfi Chaâri,Jean-Christophe Pesquet,Amel Benazza-Benyahia,Philippe Ciuciu
#t2011
#cMedical Image Analysis
#index3097847
#% 
#!
  
#*Performance analysis of a new computer aided detection system for identifying lung nodules on chest radiographs.
#@Russell C. Hardie,Steven K. Rogers,Terry Wilson,Adam Rogers
#t2008
#cMedical Image Analysis
#index3097887
#% 
#!
  
#*Segmenting the prostate and rectum in CT imagery using anatomical constraints.
#@Siqi Chen,D. Michael Lovelock,Richard J. Radke
#t2011
#cMedical Image Analysis
#index3097842
#% 
#!
  
#*Image filtering via generalized scale.
#@Andre Souza,Jayaram K. Udupa,Anant Madabhushi
#t2008
#cMedical Image Analysis
#index3097893
#% 
#!
  
#*Assessment and stenting of tracheal stenosis using deformable shape models.
#@Romulo Pinho,Kurt G. Tournoy,Jan Sijbers
#t2011
#cMedical Image Analysis
#index3097838
#% 
#!
  
#*Myocardial deformation recovery from cine MRI using a nearly incompressible biventricular model.
#@Arnaud Bistoquet,John Oshinski,Oskar M. Skrinjar
#t2008
#cMedical Image Analysis
#index3097905
#% 
#!
  
#*Validation of a new surgical procedure for percutaneous scaphoid fixation using intra-operative ultrasound.
#@Maarten Beek,Purang Abolmaesumi,Suriya Luenam,Randy E. Ellis,Richard W. Sellens,David R. Pichora
#t2008
#cMedical Image Analysis
#index3097896
#% 
#!
  
#*Nonrigid registration of dynamic medical imaging data using nD + t B-splines and a groupwise optimization approach.
#@Coert Metz,Stefan Klein,Michiel Schaap,Theo van Walsum,Wiro J. Niessen
#t2011
#cMedical Image Analysis
#index3097848
#% 
#!
  
#*Model-based blood flow quantification from rotational angiography.
#@Irina Wächter,Jörg Bredno,Roel Hermans,Jürgen Weese,Dean C. Barratt,David J. Hawkes
#t2008
#cMedical Image Analysis
#index3097866
#% 
#!
  
#*Characterization of frequency-dependent material properties of human liver and its pathologies using an impact hammer.
#@M. Umut Ozcan,Sina Ocal,Cagatay Basdogan,Gulen Dogusoy,Yaman Tokat
#t2011
#cMedical Image Analysis
#index3097841
#% 
#!
  
#*Learning to estimate out-of-plane motion in ultrasound imagery of real tissue.
#@Catherine Laporte,Tal Arbel
#t2011
#cMedical Image Analysis
#index3097837
#% 
#!
  
#*Groupwise surface correspondence by optimization: Representation and regularization.
#@Rhodri H. Davies,Carole J. Twining,Christopher J. Taylor
#t2008
#cMedical Image Analysis
#index3097858
#% 
#!
  
#*Automatic recognition of the common carotid artery in longitudinal ultrasound B-mode scans.
#@Alessandro C. Rossi,Peter J. Brands,Arnold P. G. Hoeks
#t2008
#cMedical Image Analysis
#index3097902
#% 
#!
  
#*Spherical harmonics-based parametric deconvolution of 3D surface images using bending energy minimization.
#@Khaled Khairy,Jonathon Howard
#t2008
#cMedical Image Analysis
#index3097883
#% 
#!
  
#*A methodology to study the morphologic changes in lesions during in vitro angioplasty using MRI and image processing.
#@M. Auer,P. Regitnig,Rudolf Stollberger,Franz Ebner,Gerhard Holzapfel
#t2008
#cMedical Image Analysis
#index3097876
#% 
#!
  
#*Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain.
#@Brian B. Avants,Charles L. Epstein,Murray Grossman,James C. Gee
#t2008
#cMedical Image Analysis
#index3097895
#% 
#!
  
#*Multimodal image registration using floating regressors in the joint intensity scatter plot.
#@Jeff Orchard
#t2008
#cMedical Image Analysis
#index3097865
#% 
#!
  
#*Registration of PE segment contour deformations in digital high-speed videos.
#@Michael Stiglmayr,Raphael Schwarz,Kathrin Klamroth,Günter Leugering,Jörg Lohscheller
#t2008
#cMedical Image Analysis
#index3097888
#% 
#!
  
#*A strain energy filter for 3D vessel enhancement with application to pulmonary CT images.
#@Changyan Xiao,Marius Staring,Denis P. Shamonin,Johan H. C. Reiber,Jan Stolk,Berend C. Stoel
#t2011
#cMedical Image Analysis
#index3097840
#% 
#!
  
#*Direct three-dimensional myocardial strain tensor quantification and tracking using zHARP.
#@Khaled Z. Abd-Elmoniem,Matthias Stuber,Jerry L. Prince
#t2008
#cMedical Image Analysis
#index3097855
#% 
#!
  
#*Learning deformation and structure simultaneously: In situ endograft deformation analysis.
#@Georg Langs,Nikos Paragios,Pascal Desgranges,Alain Rahmouni,Hicham Kobeiter
#t2011
#cMedical Image Analysis
#index3097836
#% 
#!
  
#*Robotic assistance for ultrasound-guided prostate brachytherapy.
#@Gabor Fichtinger,Jonathan Fiene,Christopher W. Kennedy,Gernot Kronreif,Iulian Iordachita,Danny Y. Song,Everette Clif Burdette,Peter Kazanzides
#t2008
#cMedical Image Analysis
#index3097864
#% 
#!
  
#*Independent component analysis using prior information for signal detection in a functional imaging system of the retina.
#@E. Simon Barriga,Marios S. Pattichis,Daniel Ts'o,Michael Abramoff,Randy Kardon,Young H. Kwon,Peter Soliz
#t2011
#cMedical Image Analysis
#index3097849
#% 
#!
  
#*Automatic CT-ultrasound registration for diagnostic imaging and image-guided intervention.
#@Wolfgang Wein,Shelby Brunke,Ali Khamene,Matthew R. Callstrom,Nassir Navab
#t2008
#cMedical Image Analysis
#index3097906
#% 
#!
  
#*Calibration of laryngeal endoscopic high-speed image sequences by an automated detection of parallel laser line projections.
#@Tobias Wurzbacher,Ingmar Voigt,Raphael Schwarz,Michael Döllinger,Ulrich Hoppe,Jochen Penne,Ulrich Eysholdt,Jörg Lohscheller
#t2008
#cMedical Image Analysis
#index3097898
#% 
#!
  
#*Automatic segmentation of human brain sulci.
#@Faguo Yang,Frithjof Kruggel
#t2008
#cMedical Image Analysis
#index3097889
#% 
#!
  
#*Geometrical regularization of displacement fields for histological image registration.
#@Alain Pitiot,Alexandre Guimond
#t2008
#cMedical Image Analysis
#index3097899
#% 
#!
  
#*Fast block flow tracking of atrial septal defects in 4D echocardiography.
#@Marius George Linguraru,Nikolay V. Vasilyev,Gerald R. Marx,Wayne Tworetzky,Pedro J. del Nido,Robert D. Howe
#t2008
#cMedical Image Analysis
#index3097877
#% 
#!
  
#*Editorial.
#@Sébastien Ourselin,Nicholas Ayache
#t2008
#cMedical Image Analysis
#index3097886
#% 
#!
  
#*Cell population tracking and lineage construction with spatiotemporal context.
#@Kang Li,Eric D. Miller,Mei Chen,Takeo Kanade,Lee E. Weiss,Phil G. Campbell
#t2008
#cMedical Image Analysis
#index3097903
#% 
#!
  
#*Task-based performance analysis of FBP, SART and ML for digital breast tomosynthesis using signal CNR and Channelised Hotelling Observers.
#@Dominique Van de Sompel,Michael Brady,John M. Boone
#t2011
#cMedical Image Analysis
#index3097835
#% 
#!
  
#*Segmentation of pulmonary nodules of various densities with morphological approaches and convexity models.
#@Toshiro Kubota,Anna K. Jerebko,Maneesh Dewan,Marcos Salganicoff,Arun Krishnan
#t2011
#cMedical Image Analysis
#index3097839
#% 
#!
  
#*MRI denoising using Non-Local Means.
#@José V. Manjón,José Carbonell-Caballero,Juan J. Lull,Gracián García-Martí,Luis Martí-Bonmatí,Montserrat Robles
#t2008
#cMedical Image Analysis
#index3097878
#% 
#!
  
#*A review of segmentation methods in short axis cardiac MR images.
#@Caroline Petitjean,Jean-Nicolas Dacher
#t2011
#cMedical Image Analysis
#index3097850
#% 
#!
  
#*Dense image registration through MRFs and efficient linear programming.
#@Ben Glocker,Nikos Komodakis,Georgios Tziritas,Nassir Navab,Nikos Paragios
#t2008
#cMedical Image Analysis
#index3097897
#% 
#!
  
#*A direct approach to estimating surfaces in tomographic data.
#@Ross T. Whitaker,Vidya Elangovan
#t2002
#cMedical Image Analysis
#index3098179
#% 
#!
  
#*Providing visual information to validate 2-D to 3-D registration.
#@André Guéziec,Kenong Wu,Alan D. Kalvin,Bill Williamson,Peter Kazanzides,Robert Van Vorhis
#t2000
#cMedical Image Analysis
#index3098217
#% 
#!
  
#*Radiographic stereometry for non-metal-backed acetubular cups: 3D wear estimation and related uncertainty.
#@Laurent Sarry,Stéphane Descamps,Stéphane Boisgard,Jean-Paul Levai,Jean-Yves Boire
#t2005
#cMedical Image Analysis
#index3098048
#% 
#!
  
#*Automatic initialization of an active shape model of the prostate.
#@Fernando Arámbula Cosío
#t2008
#cMedical Image Analysis
#index3097911
#% 
#!
  
#*Segmentation of 4D cardiac MR images using a probabilistic atlas and the EM algorithm.
#@Maria Lorenzo-Valdés,Gerardo I. Sanchez-Ortiz,Andrew Elkington,Raad Mohiaddin,Daniel Rueckert
#t2004
#cMedical Image Analysis
#index3098104
#% 
#!
  
#*SPASM: A 3D-ASM for segmentation of sparse and arbitrarily oriented cardiac MRI data.
#@Hans C. van Assen,Mikhail G. Danilouchkine,Alejandro F. Frangi,Sebastián Ordas,Jos J. M. Westenberg,Johan H. C. Reiber,Boudewijn P. F. Lelieveldt
#t2006
#cMedical Image Analysis
#index3098030
#% 
#!
  
#*Non-invasive visualization of collateral blood flow patterns of the circle of Willis by dynamic MR angiography.
#@Matthias J. P. van Osch,Jeroen Hendrikse,Xavier Golay,Chris J. G. Bakker,Jeroen van der Grond
#t2006
#cMedical Image Analysis
#index3097977
#% 
#!
  
#*Hidden Markov multiple event sequence models: A paradigm for the spatio-temporal analysis of fMRI data.
#@Sylvain Faisan,Laurent Thoraval,Jean-Paul Armspach,Fabrice Heitz
#t2007
#cMedical Image Analysis
#index3097919
#% 
#!
  
#*Evaluation of visualization of the prostate gland in vibro-elastography images.
#@Seyedeh Sara Mahdavi,Mehdi Moradi,Xu Wen,William J. Morris,Septimiu E. Salcudean
#t2011
#cMedical Image Analysis
#index3098310
#% 
#!
  
#*Editorial.
#@Nobuhiko Hata,Gabor Szekeley
#t2003
#cMedical Image Analysis
#index3098132
#% 
#!
  
#*Schwarz meets Schwann: Design and fabrication of biomorphic and durataxic tissue engineering scaffolds.
#@Srinivasan Rajagopalan,Richard A. Robb
#t2006
#cMedical Image Analysis
#index3098005
#% 
#!
  
#*A nonparametric MRI inhomogeneity correction method.
#@José V. Manjón,Juan J. Lull,José Carbonell-Caballero,Gracián García-Martí,Luis Martí-Bonmatí,Montserrat Robles
#t2007
#cMedical Image Analysis
#index3097928
#% 
#!
  
#*Automatic registration of portal images and volumetric CT for patient positioning in radiation therapy.
#@Ali Khamene,Peter Bloch,Wolfgang Wein,Michelle Svatos,Frank Sauer
#t2006
#cMedical Image Analysis
#index3098019
#% 
#!
  
#*Knowledge-based tensor anisotropic diffusion of cardiac magnetic resonance images.
#@Gerardo I. Sanchez-Ortiz,Daniel Rueckert,Peter Burger
#t1999
#cMedical Image Analysis
#index3098245
#% 
#!
  
#*Volumetric object modeling for surgical simulation.
#@Sarah F. Frisken Gibson,Christina Fyock,Eric Grimson,Takeo Kanade,Ron Kikinis,Hugh C. Lauer,Neil McKenzie,Andrew B. Mor,Shin Nakajima,TakaHide Ohkami,Randy Osborne,Joseph Samosky,Akira Sawada
#t1998
#cMedical Image Analysis
#index3098273
#% 
#!
  
#*Statistical analysis of normal and abnormal dissymmetry in volumetric medical images.
#@Jean-Philippe Thirion,Sylvain Prima,Gérard Subsol,Neil Roberts
#t2000
#cMedical Image Analysis
#index3098234
#% 
#!
  
#*Fast numerical algorithms for fitting multiresolution hybrid shape models to brain MRI.
#@Baba C. Vemuri,Yanlin Guo,Shang-Hong Lai,Christiana Morison Leonard
#t1998
#cMedical Image Analysis
#index3098287
#% 
#!
  
#*An advanced system for the simulation and planning of orthodontic treatment.
#@Mariano Alcañiz Raya,Carlos Monserrat,Vicente Grau,Francisco Chinesta,Antonio Ramón,Salvador Albalat
#t1998
#cMedical Image Analysis
#index3098283
#% 
#!
  
#*Coupling of fluid and elastic models for biomechanical simulations of brain deformations using FEM.
#@Alexander Hagemann,Karl Rohr,H. Siegfried Stiehl
#t2002
#cMedical Image Analysis
#index3098166
#% 
#!
  
#*Automated segmentation of the left ventricle in cardiac MRI.
#@Michael Kaus,Jens von Berg,Jürgen Weese,Wiro J. Niessen,Vladimir Pekar
#t2004
#cMedical Image Analysis
#index3098090
#% 
#!
  
#*DT-MRI denoising and neuronal fiber tracking.
#@Tim McGraw,Baba C. Vemuri,Y. Chen,Murali Rao,Thomas Mareci
#t2004
#cMedical Image Analysis
#index3098034
#% 
#!
  
#*Intra-subject elastic registration of 3D ultrasound images.
#@Pezhman Foroughi,Purang Abolmaesumi,Keyvan Hashtrudi-Zaad
#t2006
#cMedical Image Analysis
#index3097966
#% 
#!
  
#*Extracting branching tubular object geometry via cores.
#@Yonatan Fridman,Stephen M. Pizer,Stephen R. Aylward,Elizabeth Bullitt
#t2004
#cMedical Image Analysis
#index3098125
#% 
#!
  
#*On the number of clusters and the fuzziness index for unsupervised FCA application to BOLD fMRI time series.
#@Mohamed-Jalal Fadili,Su Ruan,Daniel Bloyet,Bernard Mazoyer
#t2001
#cMedical Image Analysis
#index3098196
#% 
#!
  
#*The Medical Imaging Interaction Toolkit.
#@Ivo Wolf,Marcus Vetter,Ingmar Wegner,Thomas Böttger,Marco Nolden,Max Schöbinger,Mark Hastenteufel,Tobias Kunert,Hans-Peter Meinzer
#t2005
#cMedical Image Analysis
#index3098069
#% 
#!
  
#*Experimentation with a transcranial magnetic stimulation system for functional brain mapping.
#@Gil J. Ettinger,Michael E. Leventon,W. Eric L. Grimson,Ron Kikinis,Laverne Gugino,Wayne Cote,Larry Sprung,Linda Aglio,Martha Elizabeth Shenton,Geoff Potts,Victor L. Hernandez,Eben Alexander
#t1998
#cMedical Image Analysis
#index3098288
#% 
#!
  
#*A 3-D model-based registration approach for the PET, MR and MCG cardiac data fusion.
#@Timo Mäkelä,Quoc-Cuong Pham,Patrick Clarysse,Jukka Nenonen,Jyrki Lötjönen,Outi Sipilä,Helena Hänninen,Kirsi Lauerma,Juhani Knuuti,Toivo Katila,Isabelle E. Magnin
#t2003
#cMedical Image Analysis
#index3098142
#% 
#!
  
#*Brain morphometry using 3D moment invariants.
#@Jean-Francois Mangin,Fabrice Poupon,Edouard Duchesnay,Denis Rivière,Arnaud Cachia,D. Louis Collins,Alan C. Evans,Jean Régis
#t2004
#cMedical Image Analysis
#index3098118
#% 
#!
  
#*Cardiac material markers from tagged MR images.
#@William S. Kerwin,Jerry L. Prince
#t1998
#cMedical Image Analysis
#index3098281
#% 
#!
  
#*A similarity measure for nonrigid volume registration using known joint distribution of targeted tissue: Application to dynamic CT data of the liver.
#@Jun Masumoto,Yoshinobu Sato,Masatoshi Hori,Takamichi Murakami,Takeshi Johkoh,Hironobu Nakamura,Shinichi Tamura
#t2003
#cMedical Image Analysis
#index3098139
#% 
#!
  
#*The detection and significance of subtle changes in mixed-signal brain lesions by serial MRI scan matching and spatial normalization.
#@Louis Lemieux,Udo C. Wieshmann,Nicholas F. Moran,David R. Fish,Simon D. Shorvon
#t1998
#cMedical Image Analysis
#index3098270
#% 
#!
  
#*Truth cube: Establishing physical standards for soft tissue simulation.
#@Amy E. Kerdok,Stephane Cotin,Mark P. Ottensmeyer,Anna M. Galea,Robert D. Howe,Steven Dawson
#t2003
#cMedical Image Analysis
#index3098133
#% 
#!
  
#*Cerebrovascular segmentation from TOF using stochastic models.
#@M. Sabry Hassouna,Aly A. Farag,Stephen G. Hushek,Thomas Moriarty
#t2006
#cMedical Image Analysis
#index3098020
#% 
#!
  
#*Automatic segmentation of MR images of the developing newborn brain.
#@Marcel Prastawa,John H. Gilmore,Weili Lin,Guido Gerig
#t2005
#cMedical Image Analysis
#index3098042
#% 
#!
  
#*Registration and difference analysis of corresponding mammogram images.
#@Maha Sallam,Kevin W. Bowyer
#t1999
#cMedical Image Analysis
#index3098259
#% 
#!
  
#*Plaque development, vessel curvature, and wall shear stress in coronary arteries assessed by X-ray angiography and intravascular ultrasound.
#@Andreas Wahle,John J. Lopez,Mark E. Olszewski,Sarah C. Vigmostad,Krishnan B. Chandran,James D. Rossen,Milan Sonka
#t2006
#cMedical Image Analysis
#index3097994
#% 
#!
  
#*Multi-modal image set registration and atlas formation.
#@Peter Lorenzen,Marcel Prastawa,Brad Davis,Guido Gerig,Elizabeth Bullitt,Sarang C. Joshi
#t2006
#cMedical Image Analysis
#index3097978
#% 
#!
  
#*A computational model of postoperative knee kinematics.
#@E. Chen,Randy E. Ellis,J. Tim Bryant,J. Rudan
#t2001
#cMedical Image Analysis
#index3098210
#% 
#!
  
#*A global optimisation method for robust affine registration of brain images.
#@Mark Jenkinson,Stephen M. Smith
#t2001
#cMedical Image Analysis
#index3098203
#% 
#!
  
#*Interaction in the segmentation of medical images: A survey.
#@Sílvia Delgado Olabarriaga,Arnold W. M. Smeulders
#t2001
#cMedical Image Analysis
#index3098189
#% 
#!
  
#*Landmark detection in the chest and registration of lung surfaces with an application to nodule registration.
#@Margrit Betke,Harrison Hong,Deborah Thomas,Chekema Prince,Jane P. Ko
#t2003
#cMedical Image Analysis
#index3098143
#% 
#!
  
#*Four-dimensional processing of deformable cardiac PET data.
#@Gregory J. Klein,Ronald H. Huesman
#t2002
#cMedical Image Analysis
#index3098165
#% 
#!
  
#*Retrospective correction of the heel effect in hand radiographs.
#@Gert Behiels,Frederik Maes,Dirk Vandermeulen,Paul Suetens
#t2002
#cMedical Image Analysis
#index3098172
#%496755
#%773327
#!
  
#*Optimized prostate biopsy via a statistical atlas of cancer spatial distribution.
#@Dinggang Shen,Zhiqiang Lao,Jianchao Zeng,Wei Zhang,Isabell A. Sesterhenn,Leon Sun,Judd W. Moul,Edward Herskovits,Gabor Fichtinger,Christos Davatzikos
#t2004
#cMedical Image Analysis
#index3098128
#% 
#!
  
#*Retrospective evaluation of a topology preserving non-rigid registration method.
#@Vincent Noblet,Christian Heinrich,Fabrice Heitz,Jean-Paul Armspach
#t2006
#cMedical Image Analysis
#index3097988
#% 
#!
  
#*Strategies for brain shift evaluation.
#@Peter Hastreiter,Christof Rezk-Salama,Grzegorz Soza,Michael Bauer,Günther Greiner,Rudolf Fahlbusch,Oliver Ganslandt,Christopher Nimsky
#t2004
#cMedical Image Analysis
#index3098115
#% 
#!
  
#*Deformable registration of diffusion tensor MR images with explicit orientation optimization.
#@Hui Zhang,Paul A. Yushkevich,Daniel C. Alexander,James C. Gee
#t2006
#cMedical Image Analysis
#index3097969
#%835101
#!
  
#*Distortion correction and robust tensor estimation for MR diffusion imaging.
#@Jean-Francois Mangin,Cyril Poupon,C. A. Clark,Denis Le Bihan,Isabelle Bloch
#t2002
#cMedical Image Analysis
#index3098182
#% 
#!
  
#*An EM algorithm for shape classification based on level sets.
#@Andy Tsai,William M. Wells III,Simon K. Warfield,Alan S. Willsky
#t2005
#cMedical Image Analysis
#index3098041
#% 
#!
  
#*Mutual information in coupled multi-shape model for medical image segmentation.
#@Andy Tsai,William M. Wells III,Clare M. Tempany,Eric Grimson,Alan S. Willsky
#t2004
#cMedical Image Analysis
#index3098124
#% 
#!
  
#*Efficient computational fluid dynamics mesh generation by image registration.
#@D. C. Barber,Estanislao Oubel,Alejandro F. Frangi,Rod D. Hose
#t2007
#cMedical Image Analysis
#index3097951
#% 
#!
  
#*Precision of distance determination using 3D to 2D projections: The error of migration measurement using X-ray images.
#@Kathrin Burckhardt,Christian Gerber,Jürg Hodler,Hubert Nötzli,Gábor Székely
#t2000
#cMedical Image Analysis
#index3098224
#% 
#!
  
#*Model tags: direct three-dimensional tracking of heart wall motion from tagged magnetic resonance images.
#@Alistair A. Young
#t1999
#cMedical Image Analysis
#index3098241
#% 
#!
  
#*Open science - combining open data and open source software: Medical image analysis with the Insight Toolkit.
#@Terry S. Yoo,Dimitris N. Metaxas
#t2005
#cMedical Image Analysis
#index3098077
#% 
#!
  
#*Interval change analysis to improve computer aided detection in mammography.
#@Sheila Timp,Nico Karssemeijer
#t2006
#cMedical Image Analysis
#index3098006
#% 
#!
  
#*A path algorithm for the support vector domain description and its application to medical imaging.
#@Karl Sjöstrand,Michael Sass Hansen,Henrik B. W. Larsson,Rasmus Larsen
#t2007
#cMedical Image Analysis
#index3097965
#% 
#!
  
#*A Dirichlet process mixture model for brain MRI tissue classification.
#@Adelino R. Ferreira da Silva
#t2007
#cMedical Image Analysis
#index3097922
#% 
#!
  
#*3D curve inference for diffusion MRI regularization and fibre tractography.
#@Peter Savadjiev,Jennifer S. W. Campbell,G. Bruce Pike,Kaleem Siddiqi
#t2006
#cMedical Image Analysis
#index3097993
#% 
#!
  
#*Editorial.
#@David J. Hawkes,Mads Nielsen
#t2007
#cMedical Image Analysis
#index3097960
#% 
#!
  
#*Estimation of the 3D self-similarity parameter of trabecular bone from its 2D projection.
#@Rachid Jennane,Rachid Harba,Gérald Lemineur,Stéphanie Bretteil,Anne Estrade,Claude Laurent Benhamou
#t2007
#cMedical Image Analysis
#index3097938
#% 
#!
  
#*Reconstruction and web distribution of measurable arterial models.
#@Andrea Giachetti,Massimiliano Tuveri,Gianluigi Zanetti
#t2003
#cMedical Image Analysis
#index3098154
#% 
#!
  
#*Towards robust 3D visual tracking for motion compensation in beating heart surgery.
#@Rogério Richa,Antônio Padilha Lanari Bo,Philippe Poignet
#t2011
#cMedical Image Analysis
#index3098295
#% 
#!
  
#*Unsupervised motion-compensation of multi-slice cardiac perfusion MRI.
#@Mikkel B. Stegmann,Hildur Ólafsdóttir,Henrik B. W. Larsson
#t2005
#cMedical Image Analysis
#index3098072
#% 
#!
  
#*Tagged magnetic resonance imaging of the heart: a survey.
#@Leon Axel,Albert Montillo,Daniel Kim
#t2005
#cMedical Image Analysis
#index3098059
#% 
#!
  
#*An approach for contour detection of human kidneys from ultrasound images using Markov random fields and active contours.
#@Marcos Martín-Fernández,Carlos Alberola-López
#t2005
#cMedical Image Analysis
#index3098054
#% 
#!
  
#*T-snakes: Topology adaptive snakes.
#@Tim McInerney,Demetri Terzopoulos
#t2000
#cMedical Image Analysis
#index3098231
#% 
#!
  
#*Automatic segmentation of different-sized white matter lesions by voxel probability estimation.
#@Petronella Anbeek,Koen L. Vincken,Matthias J. P. van Osch,Robertus H. C. Bisschops,Jeroen van der Grond
#t2004
#cMedical Image Analysis
#index3098100
#% 
#!
  
#*Image analysis for computer-assisted internal fixation of hip fractures.
#@T. O. Ozanian,R. Phillips
#t2000
#cMedical Image Analysis
#index3098232
#% 
#!
  
#*Stradx: real-time acquisition and visualization of freehand three-dimensional ultrasound.
#@Richard W. Prager,Andrew H. Gee,Laurence H. Berman
#t1999
#cMedical Image Analysis
#index3098265
#% 
#!
  
#*A smart atlas for endomicroscopy using automated video retrieval.
#@Barbara André,Tom Vercauteren,Anna M. Buchner,Michael B. Wallace,Nicholas Ayache
#t2011
#cMedical Image Analysis
#index3098308
#% 
#!
  
#*Motion and deformation tracking for short-axis echo-planar myocardial perfusion imaging.
#@Guang-Zhong Yang,Peter Burger,Jonathan Panting,Peter Gatehouse,Daniel Rueckert,Dudley Pennell,David N. Firmin
#t1998
#cMedical Image Analysis
#index3098274
#% 
#!
  
#*Modelling of interaction between a spatula and a human brain.
#@Kim Vang Hansen,Lars Brix,Christian F. Pedersen,Jens P. Haase,Ole Vilhelm Larsen
#t2004
#cMedical Image Analysis
#index3098087
#% 
#!
  
#*Robust mosaicing with correction of motion distortions and tissue deformations for in vivo fibered microscopy.
#@Tom Vercauteren,Aymeric Perchant,Grégoire Malandain,Xavier Pennec,Nicholas Ayache
#t2006
#cMedical Image Analysis
#index3098011
#% 
#!
  
#*Extracting and visualizing physiological parameters using dynamic contrast-enhanced magnetic resonance imaging of the breast.
#@Paul A. Armitage,Christian P. Behrenbruch,Michael Brady,Niall Moore
#t2005
#cMedical Image Analysis
#index3098082
#% 
#!
  
#*Computer-integrated revision total hip replacement surgery: concept and preliminary results.
#@Russell H. Taylor,Leo Joskowicz,Bill Williamson,André Guéziec,Alan D. Kalvin,Peter Kazanzides,Robert Van Vorhis,Jianhua Yao,Rajesh Kumar,Andrew Bzostek,Alind Sahay,Martin Börner,Armin Lahmer
#t1999
#cMedical Image Analysis
#index3098247
#% 
#!
  
#*Segmentation and measurement of brain structures in MRI including confidence bounds.
#@Miguel Ángel González Ballester,Andrew Zisserman,Michael Brady
#t2000
#cMedical Image Analysis
#index3098237
#% 
#!
  
#*Mechanical properties of the human uterine cervix: An in vivo study.
#@Edoardo Mazza,Alessandro Nava,Margit Bauer,Raimund Winter,Michael Bajka,Gerhard Holzapfel
#t2006
#cMedical Image Analysis
#index3098017
#% 
#!
  
#*Talairach-Tournoux brain atlas registration using a metalforming principle-based finite element method.
#@Meihe Xu,Wieslaw L. Nowinski
#t2001
#cMedical Image Analysis
#index3098035
#% 
#!
  
#*Evaluation of image features and search strategies for segmentation of bone structures in radiographs using Active Shape Models.
#@Gert Behiels,Frederik Maes,Dirk Vandermeulen,Paul Suetens
#t2002
#cMedical Image Analysis
#index3098163
#% 
#!
  
#*Estimating the effective degrees of freedom in univariate multiple regression analysis.
#@Frithjof Kruggel,Mélanie Pélégrini-Issac,Habib Benali
#t2002
#cMedical Image Analysis
#index3098181
#% 
#!
  
#*Editorial 2004.
#@Nicholas Ayache,Jim Duncan
#t2004
#cMedical Image Analysis
#index3098105
#% 
#!
  
#*Feature characterization in fMRI data: the Information Bottleneck approach.
#@Bertrand Thirion,Olivier D. Faugeras
#t2004
#cMedical Image Analysis
#index3098088
#% 
#!
  
#*Automatic graph-cut based segmentation of bones from knee magnetic resonance images for osteoarthritis research.
#@Sufyan Y. Ababneh,Jeffrey W. Prescott,Metin N. Gurcan
#t2011
#cMedical Image Analysis
#index3098313
#% 
#!
  
#*A unified non-rigid feature registration method for brain mapping.
#@Haili Chui,Lawrence Win,Robert T. Schultz,James S. Duncan,Anand Rangarajan
#t2003
#cMedical Image Analysis
#index3098127
#% 
#!
  
#*Definition of a four-dimensional continuous planispheric transformation for the tracking and the analysis of left-ventricle motion.
#@Jérôme Declerck,Jacques Feldmar,Nicholas Ayache
#t1998
#cMedical Image Analysis
#index3098271
#% 
#!
  
#*Evaluation framework for carotid bifurcation lumen segmentation and stenosis grading.
#@K. Hameeteman,Maria A. Zuluaga,Moti Freiman,Leo Joskowicz,Olivier Cuisenaire,Leonardo Florez-Valencia,Mehmet Akif Gülsün,Karl Krissian,J. Mille,Wilbur C. K. Wong,Maciej Orkisz,Hüseyin Tek,Marcela Hernández Hoyos,Fethallah Benmansour,Albert C. S. Chung,Sietske Rozie,M. van Gils,L. van den Borne,Jacob Sosna,P. Berman,N. Cohen,P. Douek,I. Sánchez,M. Aissat,Michiel Schaap,Coert Metz,G. P. Krestin,Aad van der Lugt,Wiro J. Niessen,Theo van Walsu
#t2011
#cMedical Image Analysis
#index3098309
#% 
#!
  
#*Statistical representation of high-dimensional deformation fields with application to statistically constrained 3D warping.
#@Zhong Xue,Dinggang Shen,Christos Davatzikos
#t2006
#cMedical Image Analysis
#index3098014
#% 
#!
  
#*Measurements and modelling of the compliance of human and porcine organs.
#@Fiona J. Carter,T. G. Frank,Penny J. Davies,D. McLean,Alfred Cuschieri
#t2001
#cMedical Image Analysis
#index3098190
#% 
#!
  
#*Analyzing the neocortical fine-structure.
#@Frithjof Kruggel,Martina K. Brückner,Thomas Arendt,Christopher J. Wiggins,D. Yves von Cramon
#t2003
#cMedical Image Analysis
#index3098141
#% 
#!
  
#*A hierarchical 3D segmentation method and the definition of vertebral body coordinate systems for QCT of the lumbar spine.
#@André Mastmeyer,Klaus Engelke,Christina Fuchs,Willi A. Kalender
#t2006
#cMedical Image Analysis
#index3098026
#% 
#!
  
#*Serial registration of intraoperative MR images of the brain.
#@Matthieu Ferrant,Arya Nabavi,Benoît Macq,Peter M. Black,Ferenc A. Jolesz,Ron Kikinis,Simon K. Warfield
#t2002
#cMedical Image Analysis
#index3098176
#% 
#!
  
#*Robust retrieval of three-dimensional structures from image stacks.
#@María A. Garza-Jinich,Peter Meer,Verónica Medina
#t1999
#cMedical Image Analysis
#index3098260
#% 
#!
  
#*Magnetic resonance angiography: From anatomical knowledge modeling to vessel segmentation.
#@Nicolas Passat,Christian Ronse,Joseph Baruthio,Jean-Paul Armspach,C. Maillot
#t2006
#cMedical Image Analysis
#index3098000
#% 
#!
  
#*Robust registration procedures for endoscopic imaging.
#@Wolfgang Konen,S. Tombrock,Martin Scholz
#t2007
#cMedical Image Analysis
#index3097954
#% 
#!
  
#*Integrating segmentation methods from the Insight Toolkit into a visualization application.
#@Ken Martin,Luis Ibáñez,Lisa Sobierajski Avila,Sébastien Barré,Jon H. Kaspersen
#t2005
#cMedical Image Analysis
#index3098063
#% 
#!
  
#*Magnetic resonance elastography: Non-invasive mapping of tissue elasticity.
#@Armando Manduca,Travis E. Oliphant,M. A. Dresner,J. L. Mahowald,S. A. Kruse,E. Amromin,Joel P. Felmlee,James F. Greenleaf,Richard L. Ehman
#t2001
#cMedical Image Analysis
#index3098194
#% 
#!
  
#*A comprehensive study of stent visualization enhancement in X-ray images by image processing means.
#@Vincent Bismuth,Régis Vaillant,François Funck,Niels Guillard,Laurent Najman
#t2011
#cMedical Image Analysis
#index3098298
#% 
#!
  
#*Image structure clustering for image quality verification of color retina images in diabetic retinopathy screening.
#@Meindert Niemeijer,Michael D. Abràmoff,Bram van Ginneken
#t2006
#cMedical Image Analysis
#index3097975
#% 
#!
  
#*Piecewise affine registration of biological images for volume reconstruction.
#@Alain Pitiot,Eric Bardinet,Paul M. Thompson,Grégoire Malandain
#t2006
#cMedical Image Analysis
#index3097999
#% 
#!
  
#*An algorithmic overview of surface registration techniques for medical imaging.
#@Michel A. Audette,Frank P. Ferrie,Terry M. Peters
#t2000
#cMedical Image Analysis
#index3098223
#% 
#!
  
#*Fast surface and volume estimation from non-parallel cross-sections, for freehand three-dimensional ultrasound.
#@Graham M. Treece,Richard W. Prager,Andrew H. Gee,Laurence H. Berman
#t1999
#cMedical Image Analysis
#index3098242
#% 
#!
  
#*3D prostate model formation from non-parallel 2D ultrasound biopsy images.
#@Derek Cool,Dónal B. Downey,Jonathan Izawa,Joseph Chin,Aaron Fenster
#t2006
#cMedical Image Analysis
#index3098003
#% 
#!
  
#*Confhusius: A robust and fully automatic calibration method for 3D freehand ultrasound.
#@François Rousseau,Pierre Hellier,Christian Barillot
#t2005
#cMedical Image Analysis
#index3098044
#% 
#!
  
#*Editorial.
#@Johan Montagnat,Patrick Clarysse,Jukka Nenonen,Toivo Katila,Isabelle E. Magnin
#t2005
#cMedical Image Analysis
#index3098053
#% 
#!
  
#*Dynamic measurement of soft tissue viscoelastic properties with a torsional resonator device.
#@Davide Valtorta,Edoardo Mazza
#t2005
#cMedical Image Analysis
#index3098060
#% 
#!
  
#*Normalized mutual information based registration using k-means clustering and shading correction.
#@Zeger F. Knops,J. B. Antoine Maintz,Max A. Viergever,Josien P. W. Pluim
#t2006
#cMedical Image Analysis
#index3097996
#% 
#!
  
#*Kernel Fisher discriminant for shape-based classification in epilepsy.
#@Santhosh Kodipaka,Baba C. Vemuri,Anand Rangarajan,Christiana Morison Leonard,I. Schmallfuss,Stephan J. Eisenschenk
#t2007
#cMedical Image Analysis
#index3097937
#% 
#!
  
#*An automated image analysis methodology for classifying megakaryocytes in chronic myeloproliferative disorders.
#@Benedetto Ballarò,Ada Maria Florena,Vito Franco,Domenico Tegolo,Claudio Tripodo,Cesare Valenti
#t2008
#cMedical Image Analysis
#index3097909
#% 
#!
  
#*A level set framework with a shape and motion prior for segmentation and region tracking in echocardiography.
#@Igor Dydenko,Fadi Jamal,Olivier Bernard,Jan D'hooge,Isabelle E. Magnin,Denis Friboulet
#t2006
#cMedical Image Analysis
#index3097972
#% 
#!
  
#*Interactive 3D editing tools for image segmentation.
#@Yan Kang,Klaus Engelke,Willi A. Kalender
#t2004
#cMedical Image Analysis
#index3098123
#% 
#!
  
#*The mechanical response of human liver and its relation to histology: An in vivo study.
#@Edoardo Mazza,Alessandro Nava,Dieter Hahnloser,Wolfram Jochum,Michael Bajka
#t2007
#cMedical Image Analysis
#index3097933
#% 
#!
  
#*Detecting glaucomatous wedge shaped defects in polarimetric images.
#@Koen A. Vermeer,Frans M. Vos,Hans Lemij,Albert M. Vossepoel
#t2003
#cMedical Image Analysis
#index3098153
#% 
#!
  
#*Predicting soft tissue deformations for a maxillofacial surgery planning system: From computational strategies to a complete clinical validation.
#@Wouter Mollemans,Filip Schutyser,Nasser Nadjmi,Frederik Maes,Paul Suetens
#t2007
#cMedical Image Analysis
#index3097935
#% 
#!
  
#*Exploring the discrimination power of the time domain for segmentation and characterization of active lesions in serial MR data.
#@Guido Gerig,Daniel Welti,Charles R. G. Guttmann,Alan C. F. Colchester,Gábor Székely
#t2000
#cMedical Image Analysis
#index3098214
#% 
#!
  
#*Creating a high-resolution spatial/symbolic model of the inner organs based on the Visible Human.
#@Andreas Pommert,Karl Heinz Höhne,Bernhard Pflesser,Ernst Richter,Martin Riemer,Thomas Schiemann,Rainer Schubert,Udo Schumacher,Ulf Tiede
#t2001
#cMedical Image Analysis
#index3098199
#% 
#!
  
#*Gray-scale and geometric registration of full-field digital and film-screen mammograms.
#@Peter R. Snoeren,Nico Karssemeijer
#t2007
#cMedical Image Analysis
#index3097957
#% 
#!
  
#*Modeling intravasation of liquid distension media in surgical simulators.
#@Stefan Tuchschmid,Michael Bajka,Dominik Szczerba,Bryn A. Lloyd,Gábor Székely,Matthias Harders
#t2008
#cMedical Image Analysis
#index3097910
#% 
#!
  
#*Modelling liver tissue properties using a non-linear visco-elastic model for surgery simulation.
#@Jean-Marc Schwartz,Marc Denninger,Denis Rancourt,Christian Moisan,Denis Laurendeau
#t2005
#cMedical Image Analysis
#index3098078
#% 
#!
  
#*A comprehensive shape model of the heart.
#@Cristian Lorenz,Jens von Berg
#t2006
#cMedical Image Analysis
#index3097985
#% 
#!
  
#*Towards ultrasound cardiac image segmentation based on the radiofrequency signal.
#@Igor Dydenko,Denis Friboulet,Jean-Marie Gorce,Jan D'hooge,Bart Bijnens,Isabelle E. Magnin
#t2003
#cMedical Image Analysis
#index3098148
#% 
#!
  
#*An Image Overlay system for medical data visualization.
#@Mike Blackwell,Constantinos Nikou,Anthony M. DiGioia,Takeo Kanade
#t2000
#cMedical Image Analysis
#index3098219
#% 
#!
  
#*An efficient motion estimator with application to medical image registration.
#@Baba C. Vemuri,Shuangying Huang,Sartaj Sahni,Christiana Morison Leonard,Cecile Mohr,Robin L. Gilmore,Jeffrey Fitzsimmons
#t1998
#cMedical Image Analysis
#index3098289
#% 
#!
  
#*Affine adaptive filtering of CT data.
#@Carl-Fredrik Westin,Jens A. Richolt,V. Moharir,Ron Kikinis
#t2000
#cMedical Image Analysis
#index3098222
#% 
#!
  
#*Algorithmic tools for real-time microsurgery simulation.
#@Joel Brown,Stephen Sorkin,Jean-Claude Latombe,Kevin Montgomery,Michael Stephanides
#t2002
#cMedical Image Analysis
#index3098171
#% 
#!
  
#*Editorial.
#@Jerry L. Prince,Dzung L. Pham,Kyle J. Myers
#t2011
#cMedical Image Analysis
#index3098297
#% 
#!
  
#*Processing and visualization for diffusion tensor MRI.
#@Carl-Fredrik Westin,Stephan E. Maier,Hatsuho Mamata,Arya Nabavi,Ferenc A. Jolesz,Ron Kikinis
#t2002
#cMedical Image Analysis
#index3098164
#% 
#!
  
#*Deformable registration of brain tumor images via a statistical model of tumor-induced deformation.
#@Ashraf Mohamed,Evangelia I. Zacharaki,Dinggang Shen,Christos Davatzikos
#t2006
#cMedical Image Analysis
#index3097981
#%834899
#%497733
#!
  
#*Luminosity and contrast normalization in retinal images.
#@Marco Foracchia,Enrico Grisan,Alfredo Ruggeri
#t2005
#cMedical Image Analysis
#index3098075
#% 
#!
  
#*An approximate bootstrap technique for variance estimation in parametric images.
#@Ranjan Maitra
#t1998
#cMedical Image Analysis
#index3098279
#% 
#!
  
#*Augmented reality guidance for needle biopsies: An initial randomized, controlled trial in phantoms.
#@Michael Rosenthal,Andrei State,Joohi Lee,Gentaro Hirota,Jeremy Ackerman,Kurtis Keller,Etta D. Pisano,Michael R. Jiroutek,Keith E. Muller,Henry Fuchs
#t2002
#cMedical Image Analysis
#index3098187
#% 
#!
  
#*Evaluation of using absolute versus relative base level when analyzing brain activation images using the scale-space primal sketch.
#@Mikael Rosbacke,Tony Lindeberg,Eva Björkman,Per E. Roland
#t2001
#cMedical Image Analysis
#index3098205
#% 
#!
  
#*Contour Area Filtering of two-dimensional electrophoresis images.
#@Ramakrishnan Kazhiyur-Mannar,Dominic J. Smiraglia,Christoph Plass,Rephael Wenger
#t2006
#cMedical Image Analysis
#index3098025
#% 
#!
  
#*Analyzing attributes of vessel populations.
#@Elizabeth Bullitt,Keith E. Muller,Inkyung Jung,Weili Lin,Stephen R. Aylward
#t2005
#cMedical Image Analysis
#index3098052
#% 
#!
  
#*Kernel regression based feature extraction for 3D MR image denoising.
#@Ezequiel López-Rubio,María Nieves Florentín-Núñez
#t2011
#cMedical Image Analysis
#index3098307
#% 
#!
  
#*High-quality two-stage resampling for 3-D volumes in medical imaging.
#@Mika Seppä
#t2007
#cMedical Image Analysis
#index3097962
#% 
#!
  
#*Interactive segmentation of abdominal aortic aneurysms in CTA images.
#@Marleen de Bruijne,Bram van Ginneken,Max A. Viergever,Wiro J. Niessen
#t2004
#cMedical Image Analysis
#index3098106
#% 
#!
  
#*Real-time synthesis of bleeding for virtual hysteroscopy.
#@János Zátonyi,Rupert Paget,Gábor Székely,Markus Grassi,Michael Bajka
#t2005
#cMedical Image Analysis
#index3098081
#% 
#!
  
#*Image matching as a diffusion process: an analogy with Maxwell's demons.
#@Jean-Philippe Thirion
#t1998
#cMedical Image Analysis
#index3098285
#% 
#!
  
#*Symmetric image registration.
#@Peter Rogelj,Stanislav Kovacic
#t2006
#cMedical Image Analysis
#index3098018
#% 
#!
  
#*Phase mutual information as a similarity measure for registration.
#@Matthew Mellor,Michael Brady
#t2005
#cMedical Image Analysis
#index3098064
#% 
#!
  
#*Erratum to: "A fully automatic and robust brain MRI tissue classification method" [Medical Image Analysis 7 (2003) 513-527].
#@Chris A. Cocosco,Alex P. Zijdenbos,Alan C. Evans
#t2004
#cMedical Image Analysis
#index3098099
#% 
#!
  
#*Guiding systems for computer-assisted surgery: introducing synergistic devices and discussing the different approaches.
#@Jocelyne Troccaz,Michael A. Peshkin,Brian L. Davies
#t1998
#cMedical Image Analysis
#index3098280
#% 
#!
  
#*A procedure to average 3D anatomical structures.
#@Krishna Subramanyan,David Dean
#t2000
#cMedical Image Analysis
#index3098229
#% 
#!
  
#*A method for approximating the density of maximum-likelihood and maximum a posteriori estimates under a Gaussian noise model.
#@Craig K. Abbey,Eric Clarkson,Harrison H. Barrett,Stefan P. Müller,Frank J. Rybicki
#t1998
#cMedical Image Analysis
#index3098268
#% 
#!
  
#*Extracting parametric images from dynamic contrast-enhanced MRI studies of the brain using factor analysis.
#@Anne L. Martel,Alan R. Moody,Steven J. Allder,Gota S. Delay,Paul S. Morgan
#t2001
#cMedical Image Analysis
#index3098208
#% 
#!
  
#*Quantitative evaluation of convolution-based methods for medical image interpolation.
#@Erik H. W. Meijering,Wiro J. Niessen,Max A. Viergever
#t2001
#cMedical Image Analysis
#index3098191
#% 
#!
  
#*Generalized image models and their application as statistical models of images.
#@Miguel Ángel González Ballester,Xavier Pennec,Marius George Linguraru,Nicholas Ayache
#t2004
#cMedical Image Analysis
#index3098112
#% 
#!
  
#*Non-rigid registration of multi-modal images using both mutual information and cross-correlation.
#@Adrian Andronache,Martin von Siebenthal,Gábor Székely,Philippe C. Cattin
#t2008
#cMedical Image Analysis
#index3097907
#% 
#!
  
#*Deformable meshes with automated topology changes for coarse-to-fine three-dimensional surface extraction.
#@Jacques-Olivier Lachaud,Annick Montanvert
#t1999
#cMedical Image Analysis
#index3098250
#% 
#!
  
#*Localization of anatomical point landmarks in 3D medical images by fitting 3D parametric intensity models.
#@Stefan Wörz,Karl Rohr
#t2006
#cMedical Image Analysis
#index3097990
#% 
#!
  
#*Automatic segmentation of 3D micro-CT coronary vascular images.
#@Jack Lee,Patricia Beighley,Erik Ritman,Nicolas Smith
#t2007
#cMedical Image Analysis
#index3097944
#% 
#!
  
#*A three-dimensional virtual environment for modeling mechanical cardiopulmonary interactions.
#@Jonathan M. Kaye,Frank P. Primiano Jr.,Dimitris N. Metaxas
#t1998
#cMedical Image Analysis
#index3098272
#% 
#!
  
#*White matter tractography by anisotropic wavefront evolution and diffusion tensor imaging.
#@Marcel Jackowski,Chiu Yen Kao,MaoLin Qiu,R. Todd Constable,Lawrence H. Staib
#t2005
#cMedical Image Analysis
#index3098071
#% 
#!
  
#*Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.
#@Isabelle Corouge,P. Thomas Fletcher,Sarang C. Joshi,Sylvain Gouttard,Guido Gerig
#t2006
#cMedical Image Analysis
#index3098036
#% 
#!
  
#*Recovering the X-ray projection geometry for three-dimensional tomographic reconstruction with additional sensors: Attached camera versus external navigation system.
#@Matthias Mitschke,Nassir Navab
#t2003
#cMedical Image Analysis
#index3098134
#% 
#!
  
#*Tunneling descent for m.a.p. active contours in ultrasound segmentation.
#@Zhong Tao,Hemant D. Tagare
#t2007
#cMedical Image Analysis
#index3097934
#% 
#!
  
#*Statistical shape modeling of low level visual area borders.
#@Isabelle Corouge,Michel Dojat,Christian Barillot
#t2004
#cMedical Image Analysis
#index3098116
#% 
#!
  
#*Tracking of a bronchoscope using epipolar geometry analysis and intensity-based image registration of real and virtual endoscopic images.
#@Kensaku Mori,Daisuke Deguchi,Jun Sugiyama,Yasuhito Suenaga,Jun-ichiro Toriwaki,Calvin R. Maurer Jr.,Hirotsugu Takabatake,Hiroshi Natori
#t2002
#cMedical Image Analysis
#index3098184
#% 
#!
  
#*Non-parametric geodesic active regions: Method and evaluation for cerebral aneurysms segmentation in 3DRA and CTA.
#@Monica Hernandez,Alejandro F. Frangi
#t2007
#cMedical Image Analysis
#index3097921
#% 
#!
  
#*An information theoretic approach for non-rigid image registration using voxel class probabilities.
#@Emiliano D'Agostino,Frederik Maes,Dirk Vandermeulen,Paul Suetens
#t2006
#cMedical Image Analysis
#index3098009
#% 
#!
  
#*Removing tetrahedra from manifold tetrahedralisation: application to real-time surgical simulation.
#@Clement Forest,Hervé Delingette,Nicholas Ayache
#t2005
#cMedical Image Analysis
#index3098084
#% 
#!
  
#*Thoracic non-rigid registration combining self-organizing maps and radial basis functions.
#@George K. Matsopoulos,Nicolaos A. Mouravliansky,Pantelis A. Asvestas,Konstantinos K. Delibasis,Vassilis Kouloulias
#t2005
#cMedical Image Analysis
#index3098043
#% 
#!
  
#*The evaluation of single-view and multi-view fusion 3D echocardiography using image-driven segmentation and tracking.
#@Kashif Rajpoot,Vicente Grau,J. Alison Noble,Harald Becher,Cezary Szmigielski
#t2011
#cMedical Image Analysis
#index3098314
#% 
#!
  
#*Delineating white matter structure in diffusion tensor MRI with anisotropy creases.
#@Gordon L. Kindlmann,Xavier Tricoche,Carl-Fredrik Westin
#t2007
#cMedical Image Analysis
#index3097916
#% 
#!
  
#*Statistical shape analysis of neuroanatomical structures based on medial models.
#@Martin Styner,Guido Gerig,Jeffrey A. Lieberman,D. Jones,D. Weinberger
#t2003
#cMedical Image Analysis
#index3098145
#% 
#!
  
#*A biologically inspired algorithm for microcalcification cluster detection.
#@Marius George Linguraru,Kostas Marias,Ruth E. English,Michael Brady
#t2006
#cMedical Image Analysis
#index3097976
#% 
#!
  
#*Pulmonary nodule detection in CT images with quantized convergence index filter.
#@Sumiaki Matsumoto,Harold L. Kundel,James C. Gee,Warren B. Gefter,Hiroto Hatabu
#t2006
#cMedical Image Analysis
#index3097971
#% 
#!
  
#*Medical image analysis.
#@Baba C. Vemuri,James Duncan
#t1999
#cMedical Image Analysis
#index3098266
#% 
#!
  
#*Informative frame classification for endoscopy video.
#@Jung-Hwan Oh,Sae Hwang,JeongKyu Lee,Wallapak Tavanapong,Johnny Wong,Piet C. de Groen
#t2007
#cMedical Image Analysis
#index3097943
#% 
#!
  
#*Segmentation of anatomical structures in chest radiographs using supervised methods: a comparative study on a public database.
#@Bram van Ginneken,Mikkel B. Stegmann,Marco Loog
#t2006
#cMedical Image Analysis
#index3098024
#% 
#!
  
#*Adaptive registration using local information measures.
#@Hyunjin Park,Peyton H. Bland,Kristy K. Brock,Charles R. Meyer
#t2004
#cMedical Image Analysis
#index3098098
#% 
#!
  
#*Editorial.
#@Christian Barillot,David R. Haynor,Pierre Hellier
#t2005
#cMedical Image Analysis
#index3098061
#% 
#!
  
#*A multi-scale probabilistic network model for detection, synthesis and compression in mammographic image analysis.
#@Paul Sajda,Clay Spence,Lucas C. Parra
#t2003
#cMedical Image Analysis
#index3098147
#% 
#!
  
#*An MRI digital brain phantom for validation of segmentation methods.
#@Bruno Alfano,Marco Comerci,Michele Larobina,Anna Prinster,Joseph P. Hornak,S. Easter Selvan,Umberto Amato,Mario Quarantelli,Gioacchino Tedeschi,Arturo Brunetti,Marco Salvatore
#t2011
#cMedical Image Analysis
#index3098291
#% 
#!
  
#*Statistical image reconstruction methods for randoms-precorrected PET scans.
#@Mehmet Yavuz,Jeffrey A. Fessler
#t1998
#cMedical Image Analysis
#index3098286
#% 
#!
  
#*Registration of freehand 3D ultrasound and magnetic resonance liver images.
#@Graeme P. Penney,Jane M. Blackall,M. S. Hamady,T. Sabharwal,A. Adam,David J. Hawkes
#t2004
#cMedical Image Analysis
#index3098094
#% 
#!
  
#*Fast re-rendering of volume and surface graphics by depth, color, and opacity buffering.
#@Abhir Bhalerao,Hanspeter Pfister,Michael Halle,Ron Kikinis
#t2000
#cMedical Image Analysis
#index3098211
#% 
#!
  
#*In vivo finite element model-based image analysis of pacemaker lead mechanics.
#@Walt W. Baxter,Andrew D. McCulloch
#t2001
#cMedical Image Analysis
#index3098202
#% 
#!
  
#*Impact of image spatial, temporal, and velocity resolutions on cardiovascular indices derived from color-Doppler echocardiography.
#@José Luis Rojo-Álvarez,Javier Bermejo,Ana Belén Rodríguez-González,Andrés Martínez-Fernández,Raquel Yotti,Miguel A. García-Fernández,José Carlos Antoranz
#t2007
#cMedical Image Analysis
#index3097945
#% 
#!
  
#*A Hough transform global probabilistic approach to multiple-subject diffusion MRI tractography.
#@Iman Aganj,Christophe Lenglet,Neda Jahanshad,Essa Yacoub,Noam Harel,Paul M. Thompson,Guillermo Sapiro
#t2011
#cMedical Image Analysis
#index3098300
#% 
#!
  
#*Editorial.
#@J. B. Antoine Maintz,James C. Gee
#t2006
#cMedical Image Analysis
#index3098015
#% 
#!
  
#*Vessel enhancing diffusion: A scale space representation of vessel structures.
#@Rashindra Manniesing,Max A. Viergever,Wiro J. Niessen
#t2006
#cMedical Image Analysis
#index3097995
#% 
#!
  
#*Phantom-based performance evaluation: Application to brain segmentation from magnetic resonance images.
#@Bruno Moretti,Mohamed-Jalal Fadili,Su Ruan,Daniel Bloyet,Bernard Mazoyer
#t2000
#cMedical Image Analysis
#index3098226
#% 
#!
  
#*Segmentation of carpal bones from CT images using skeletally coupled deformable models.
#@Thomas B. Sebastian,Hüseyin Tek,Joseph J. Crisco,Benjamin B. Kimia
#t2003
#cMedical Image Analysis
#index3098135
#% 
#!
  
#*Three-dimensional multi-scale line filter for segmentation and visualization of curvilinear structures in medical images.
#@Yoshinobu Sato,Shin Nakajima,Nobuyuki Shiraga,Hideki Atsumi,Shigeyuki Yoshida,Thomas Koller,Guido Gerig,Ron Kikinis
#t1998
#cMedical Image Analysis
#index3098290
#% 
#!
  
#*Correction of susceptibility artifacts in diffusion tensor data using non-linear registration.
#@Dorit Merhof,Grzegorz Soza,A. Stadlbauer,Günther Greiner,Christopher Nimsky
#t2007
#cMedical Image Analysis
#index3097917
#% 
#!
  
#*Medical image registration with partial data.
#@Senthil Periaswamy,Hany Farid
#t2006
#cMedical Image Analysis
#index3097998
#% 
#!
  
#*GIST: an interactive, GPU-based level set segmentation tool for 3D medical images.
#@Joshua E. Cates,Aaron E. Lefohn,Ross T. Whitaker
#t2004
#cMedical Image Analysis
#index3098113
#% 
#!
  
#*A CAD system for the 3D location of lesions in mammograms.
#@Yasuyo Kita,Eriko Tohno,Ralph Highnam,Michael Brady
#t2002
#cMedical Image Analysis
#index3098170
#% 
#!
  
#*Capturing intraoperative deformations: research experience at Brigham and Women's hospital.
#@Simon K. Warfield,Steven Haker,Ion-Florin Talos,Corey Kemper,Neil I. Weisenfeld,Andrea J. U. Mewes,Daniel Goldberg-Zimring,Kelly H. Zou,Carl-Fredrik Westin,William M. Wells III,Clare M. Tempany,Alexandra Golby,Peter M. Black,Ferenc A. Jolesz,Ron Kikinis
#t2005
#cMedical Image Analysis
#index3098076
#% 
#!
  
#*DRAMMS: Deformable registration via attribute matching and mutual-saliency weighting.
#@Yangming Ou,Aristeidis Sotiras,Nikos Paragios,Christos Davatzikos
#t2011
#cMedical Image Analysis
#index3098306
#% 
#!
  
#*Model-driven brain shift compensation.
#@Oskar M. Skrinjar,Arya Nabavi,James S. Duncan
#t2002
#cMedical Image Analysis
#index3098161
#% 
#!
  
#*Segmentation of blood vessels from red-free and fluorescein retinal images.
#@M. Elena Martínez-Pérez,Alun D. Hughes,Simon A. Thom,Anil A. Bharath,Kim H. Parker
#t2007
#cMedical Image Analysis
#index3097936
#% 
#!
  
#*Symmetry axis computation for almost-symmetrical and asymmetrical objects: Application to pigmented skin lesions.
#@Philippe Schmid-Saugeon
#t2000
#cMedical Image Analysis
#index3098216
#% 
#!
  
#*Diffusion tensor magnetic resonance image regularization.
#@Olivier Coulon,Daniel C. Alexander,Simon R. Arridge
#t2004
#cMedical Image Analysis
#index3098107
#% 
#!
  
#*CURVES: Curve evolution for vessel segmentation.
#@Liana M. Lorigo,Olivier D. Faugeras,W. Eric L. Grimson,Renaud Keriven,Ron Kikinis,Arya Nabavi,Carl-Fredrik Westin
#t2001
#cMedical Image Analysis
#index3098188
#% 
#!
  
#*Flux driven automatic centerline extraction.
#@Sylvain Bouix,Kaleem Siddiqi,Allen Tannenbaum
#t2005
#cMedical Image Analysis
#index3098085
#% 
#!
  
#*Tumor growth models to generate pathologies for surgical training simulators.
#@Raimundo Sierra,Michael Bajka,Gábor Székely
#t2006
#cMedical Image Analysis
#index3097973
#% 
#!
  
#*3D ultrasound measurement of large organ volume.
#@Graham M. Treece,Richard W. Prager,Andrew H. Gee,Laurence H. Berman
#t2001
#cMedical Image Analysis
#index3098192
#% 
#!
  
#*Tissue deformation and shape models in image-guided interventions: a discussion paper.
#@David J. Hawkes,Dean C. Barratt,Jane M. Blackall,Carolyn S. K. Chan,Philip J. Edwards,Kawal S. Rhode,Graeme P. Penney,Jamie McClelland,Derek L. G. Hill
#t2005
#cMedical Image Analysis
#index3098074
#% 
#!
  
#*GPU based real-time instrument tracking with three-dimensional ultrasound.
#@Paul M. Novotny,Jeffrey A. Stoll,Nikolay V. Vasilyev,Pedro J. del Nido,Pierre E. Dupont,Todd E. Zickler,Robert D. Howe
#t2007
#cMedical Image Analysis
#index3097959
#%498176
#!
  
#*Classification of hemodynamics from dynamic-susceptibility-contrast magnetic resonance (DSC-MR) brain images using noiseless independent factor analysis.
#@Yen-Chun Chou,Michael Mu Huo Teng,Wan-Yuo Guo,Jen-Chuen Hsieh,Yu-Te Wu
#t2007
#cMedical Image Analysis
#index3097924
#% 
#!
  
#*A generic framework for the parcellation of the cortical surface into gyri using geodesic Voronoı̈ diagrams.
#@Arnaud Cachia,Jean-François Mangin,Denis Rivière,Dimitri Papadopoulos-Orfanos,Ferath Kherif,Isabelle Bloch,Jean Régis
#t2003
#cMedical Image Analysis
#index3098157
#% 
#!
  
#*Model-based detection of spiculated lesions in mammograms.
#@Reyer Zwiggelaar,Tim C. Parr,James E. Schumm,Ian W. Hutt,Christopher J. Taylor,Susan M. Astley,Caroline R. M. Boggis
#t1999
#cMedical Image Analysis
#index3098249
#% 
#!
  
#*Statistical shape model of atria, ventricles and epicardium from short- and long-axis MR images.
#@Jyrki Lötjönen,Sari Kivistö,Juha Koikkalainen,Daniel Smutek,Kirsi Lauerma
#t2004
#cMedical Image Analysis
#index3098111
#% 
#!
  
#*Robust registration for computer-integrated orthopedic surgery: Laboratory validation and clinical experience.
#@B. Ma,R. E. Ellis
#t2003
#cMedical Image Analysis
#index3098002
#% 
#!
  
#*A statistically based flow for image segmentation.
#@Eric Pichon,Allen Tannenbaum,Ron Kikinis
#t2004
#cMedical Image Analysis
#index3098093
#% 
#!
  
#*Boundary element method-based regularization for recovering of LV deformation.
#@Ping Yan,Albert J. Sinusas,James S. Duncan
#t2007
#cMedical Image Analysis
#index3097915
#% 
#!
  
#*Spatio-temporal free-form registration of cardiac MR image sequences.
#@Dimitrios Perperidis,Raad Mohiaddin,Daniel Rueckert
#t2005
#cMedical Image Analysis
#index3098065
#%206276
#!
  
#*Unifying framework for multimodal brain MRI segmentation based on Hidden Markov Chains.
#@Stephanie Bricq,Christophe Collet,Jean-Paul Armspach
#t2008
#cMedical Image Analysis
#index3097908
#% 
#!
  
#*Deformable biomechanical models: Application to 4D cardiac image analysis.
#@Maxime Sermesant,Clement Forest,Xavier Pennec,Hervé Delingette,Nicholas Ayache
#t2003
#cMedical Image Analysis
#index3098136
#% 
#!
  
#*Direct cortical mapping via solving partial differential equations on implicit surfaces.
#@Yonggang Shi,Paul M. Thompson,Ivo D. Dinov,Stanley Osher,Arthur W. Toga
#t2007
#cMedical Image Analysis
#index3097931
#% 
#!
  
#*Segmentation of the skull in MRI volumes using deformable model and taking the partial volume effect into account.
#@Hilmi Rifai,Isabelle Bloch,Seth Hutchinson,Joe Wiart,Line Garnero
#t2000
#cMedical Image Analysis
#index3098221
#% 
#!
  
#*Towards a realistic echographic simulator.
#@Diego d'Aulignac,Christian Laugier,Jocelyne Troccaz,S. Vieira
#t2006
#cMedical Image Analysis
#index3098004
#% 
#!
  
#*The development and evaluation of CADMIUM: a prototype system to assist in the interpretation of mammograms.
#@Paul Taylor,John Fox,Andrew Todd-Pokropek
#t1999
#cMedical Image Analysis
#index3098263
#% 
#!
  
#*MR image segmentation of the knee bone using phase information.
#@Pierrick Bourgeat,Jurgen Fripp,Peter Stanwell,Saadallah Ramadan,Sébastien Ourselin
#t2007
#cMedical Image Analysis
#index3097952
#% 
#!
  
#*Coupled minimum-cost flow cell tracking for high-throughput quantitative analysis.
#@Dirk R. Padfield,Jens Rittscher,Badrinath Roysam
#t2011
#cMedical Image Analysis
#index3098315
#% 
#!
  
#*Invariant surface alignment in the presence of affine and some nonlinear transformations.
#@Fernand S. Cohen,Chuchart Pintavirooj
#t2004
#cMedical Image Analysis
#index3098122
#% 
#!
  
#*Modelling of soft tissue deformation for laparoscopic surgery simulation.
#@Gábor Székely,Christian Brechbühler,R. Hutter,Alex Rhomberg,Nicholas Ironmonger,P. Schmid
#t2000
#cMedical Image Analysis
#index3098235
#% 
#!
  
#*Hippocrate: a safe robot arm for medical applications with force feedback.
#@François Pierrot,Etienne Dombre,Eric Dégoulange,Loïc Urbain,Pierre Caron,Sylvie Boudet,Jérome Gariépy,Jean-Louis Mégnien
#t1999
#cMedical Image Analysis
#index3098244
#% 
#!
  
#*GAMEs: Growing and adaptive meshes for fully automatic shape modeling and analysis.
#@Luca Ferrarini,Hans Olofsen,Walter M. Palm,Mark A. van Buchem,Johan H. C. Reiber,Faiza Admiraal-Behloul
#t2007
#cMedical Image Analysis
#index3097918
#% 
#!
  
#*Editorial.
#@Alejandro F. Frangi,Petia Radeva,Andrés Santos
#t2006
#cMedical Image Analysis
#index3097987
#% 
#!
  
#*Automatic recognition of cortical sulci of the human brain using a congregation of neural networks.
#@Denis Rivière,Jean-François Mangin,Dimitri Papadopoulos-Orfanos,Jean-Marc Martinez,Vincent Frouin,Jean Régis
#t2002
#cMedical Image Analysis
#index3098178
#% 
#!
  
#*An automated method for the detection of pulmonary embolism in V/Q-scans.
#@Attila Frigyesi
#t2003
#cMedical Image Analysis
#index3098150
#% 
#!
  
#*Pseudo ground truth based nonrigid registration of myocardial perfusion MRI.
#@Chao Li,Ying Sun,Ping Chai
#t2011
#cMedical Image Analysis
#index3098301
#% 
#!
  
#*Estimation of 3D left ventricular deformation from echocardiography.
#@Xenophon Papademetris,Albert J. Sinusas,Donald P. Dione,James S. Duncan
#t2001
#cMedical Image Analysis
#index3098197
#% 
#!
  
#*On-line analysis of echocardiographic image sequences.
#@Andrea Giachetti
#t1998
#cMedical Image Analysis
#index3098278
#% 
#!
  
#*Fusing speed and phase information for vascular segmentation of phase contrast MR angiograms.
#@Albert C. S. Chung,J. Alison Noble,Paul E. Summers
#t2002
#cMedical Image Analysis
#index3098185
#% 
#!
  
#*Evaluation of robot-based registration for subtraction radiography.
#@Grigore C. Burdea,Stanley M. Dunn,Guy Levy
#t1999
#cMedical Image Analysis
#index3098256
#% 
#!
  
#*Efficient multi-modal dense field non-rigid registration: alignment of histological and section images.
#@Aloys du Bois d'Aische,Mathieu De Craene,Xavier Geets,Vincent Grégoire,Benoit M. Macq,Simon K. Warfield
#t2005
#cMedical Image Analysis
#index3098037
#% 
#!
  
#*Lagrangian frame diffeomorphic image registration: Morphometric comparison of human and chimpanzee cortex.
#@Brian B. Avants,P. Thomas Schoenemann,James C. Gee
#t2006
#cMedical Image Analysis
#index3097974
#% 
#!
  
#*Segmentation of volumetric MRA images by using capillary active contour.
#@Pingkun Yan,Ashraf A. Kassim
#t2006
#cMedical Image Analysis
#index3098016
#% 
#!
  
#*Using the logarithm of odds to define a vector space on probabilistic atlases.
#@Kilian M. Pohl,John W. Fisher III,Sylvain Bouix,Martha Elizabeth Shenton,Robert W. McCarley,W. Eric L. Grimson,Ron Kikinis,William M. Wells III
#t2007
#cMedical Image Analysis
#index3097946
#% 
#!
  
#*A layered model of a virtual human intestine for surgery simulation.
#@Laure France,Julien Lenoir,Alexis Angelidis,Philippe Meseure,Marie-Paule Cani,François Faure,Christophe Chaillou
#t2005
#cMedical Image Analysis
#index3098062
#% 
#!
  
#*Stochastic finite element framework for simultaneous estimation of cardiac kinematic functions and material parameters.
#@Pengcheng Shi,Huafeng Liu
#t2003
#cMedical Image Analysis
#index3098108
#% 
#!
  
#*Physical model-based non-rigid registration incorporating statistical shape information.
#@Yongmei Michelle Wang,Lawrence H. Staib
#t2000
#cMedical Image Analysis
#index3098225
#% 
#!
  
#*Quantitative analysis of multi-spectral fundus images.
#@I. B. Styles,A. Calcagni,Ela Claridge,Felipe Orihuela-Espina,J. M. Gibson
#t2006
#cMedical Image Analysis
#index3098001
#% 
#!
  
#*Deformable organisms for automatic medical image analysis.
#@Tim McInerney,Ghassan Hamarneh,Martha Elizabeth Shenton,Demetri Terzopoulos
#t2002
#cMedical Image Analysis
#index3098162
#%407144
#%1031506
#%497713
#%1032958
#%1033163
#%776544
#!
  
#*A computer-aided diagnosis system for detection of lung nodules in chest radiographs with an evaluation on a public database.
#@Arnold M. R. Schilham,Bram van Ginneken,Marco Loog
#t2006
#cMedical Image Analysis
#index3097983
#% 
#!
  
#*Effects of registration regularization and atlas sharpness on segmentation accuracy.
#@B. T. Thomas Yeo,Mert R. Sabuncu,Rahul Desikan,Bruce Fischl,Polina Golland
#t2008
#cMedical Image Analysis
#index3097914
#%497430
#%498398
#!
  
#*A 3D generalization of user-steered live-wire segmentation.
#@Alexandre X. Falcão,Jayaram K. Udupa
#t2000
#cMedical Image Analysis
#index3098228
#% 
#!
  
#*Integrating watersheds and critical point analysis for object detection in discrete 2D images.
#@Guoyi Fu,S. A. Hojjat,Alan C. F. Colchester
#t2004
#cMedical Image Analysis
#index3098097
#% 
#!
  
#*Assimilating intraoperative data with brain shift modeling using the adjoint equations.
#@Karen E. Lunn,Keith D. Paulsen,Daniel R. Lynch,David W. Roberts,Francis E. Kennedy,Alex Hartov
#t2005
#cMedical Image Analysis
#index3098055
#% 
#!
  
#*2D+T acoustic boundary detection in echocardiography.
#@Miguel Mulet-Parada,J. Alison Noble
#t2000
#cMedical Image Analysis
#index3098213
#% 
#!
  
#*Inverse finite element characterization of soft tissues.
#@M. Kauer,V. Vuskovic,J. Dual,Gábor Székely,Michael Bajka
#t2002
#cMedical Image Analysis
#index3098175
#%835101
#%1043505
#%130871
#%498066
#%586947
#%497536
#!
  
#*A biplanar fluoroscopic approach for the measurement, modeling, and simulation of needle and soft-tissue interaction.
#@James T. Hing,Ari D. Brooks,Jaydev P. Desai
#t2007
#cMedical Image Analysis
#index3097932
#% 
#!
  
#*Cortical sulci recognition and spatial normalization.
#@Matthieu Perrot,Denis Rivière,Jean-François Mangin
#t2011
#cMedical Image Analysis
#index3098299
#% 
#!
  
#*Methods for segmenting curved needles in ultrasound images.
#@Stephen H. Okazawa,Richelle Ebrahimi,Jason Chuang,Robert Rohling,Septimiu E. Salcudean
#t2006
#cMedical Image Analysis
#index3098012
#% 
#!
  
#*Automatic elastic image registration by interpolation of 3D rotations and translations from discrete rigid-body transformations.
#@Vivek Walimbe,Raj Shekhar
#t2006
#cMedical Image Analysis
#index3097992
#% 
#!
  
#*Towards inference of human brain connectivity from MR diffusion tensor data.
#@Cyril Poupon,Jean-Francois Mangin,C. A. Clark,Vincent Frouin,Jean Régis,Denis Le Bihan,Isabelle Bloch
#t2001
#cMedical Image Analysis
#index3098200
#% 
#!
  
#*Guest editorial.
#@Hervé Delingette,Marc Thiriet
#t2005
#cMedical Image Analysis
#index3098045
#% 
#!
  
#*The application of serial MRI analysis techniques to the study of cerebral atrophy in late-onset dementia.
#@S. M. Paling,E. D. Williams,R. Barber,E. J. Burton,William R. Crum,Nick C. Fox,J. T. O'Brien
#t2004
#cMedical Image Analysis
#index3098121
#% 
#!
  
#*Editorial.
#@James S. Duncan,Guido Gerig
#t2006
#cMedical Image Analysis
#index3098023
#% 
#!
  
#*Creases as local features of deformation grids.
#@Fred L. Bookstein
#t2000
#cMedical Image Analysis
#index3098238
#% 
#!
  
#*Recent advances in diffusion MRI modeling: Angular and radial reconstruction.
#@Haz-Edine Assemlal,David Tschumperlé,Luc Brun,Kaleem Siddiqi
#t2011
#cMedical Image Analysis
#index3098305
#% 
#!
  
#*Tumor feature visualization with unsupervised learning.
#@Tim W. Nattkemper,Axel Wismüller
#t2005
#cMedical Image Analysis
#index3098051
#% 
#!
  
#*Accuracy evaluation of direct navigation with an isocentric 3D rotational X-ray system.
#@Everine B. van de Kraats,Theo van Walsum,Lance Kendrick,Niels J. Noordhoek,Wiro J. Niessen
#t2006
#cMedical Image Analysis
#index3097997
#% 
#!
  
#*Optimization of 360° projection fluorescence molecular tomography.
#@Tobias Lasser,Vasilis Ntziachristos
#t2007
#cMedical Image Analysis
#index3097923
#% 
#!
  
#*CARABEAMER: a treatment planner for a robotic radiosurgical system with general kinematics.
#@Rhea Tombropoulos,John R. Adler Jr.,Jean-Claude Latombe
#t1999
#cMedical Image Analysis
#index3098252
#% 
#!
  
#*Reviewers - an acknowledgement.
#@Nicholas Ayache
#t2004
#cMedical Image Analysis
#index3098114
#% 
#!
  
#*Motion-compensated MR valve imaging with COMB tag tracking and super-resolution enhancement.
#@Andrew W. Dowsey,Jennifer Keegan,Mirna Lerotic,Simon Thom,David N. Firmin,Guang-Zhong Yang
#t2007
#cMedical Image Analysis
#index3097942
#% 
#!
  
#*Polyrigid and polyaffine transformations: A novel geometrical tool to deal with non-rigid deformations - Application to the registration of histological slices.
#@Vincent Arsigny,Xavier Pennec,Nicholas Ayache
#t2005
#cMedical Image Analysis
#index3098073
#% 
#!
  
#*Level set based cerebral vasculature segmentation and diameter quantification in CT angiography.
#@Rashindra Manniesing,B. K. Velthuis,M. S. van Leeuwen,I. C. van der Schaaf,P. J. van Laar,Wiro J. Niessen
#t2006
#cMedical Image Analysis
#index3098027
#% 
#!
  
#*Hierarchical adaptive local affine registration for fast and robust respiratory motion estimation.
#@Christian Buerger,Tobias Schaeffter,Andrew P. King
#t2011
#cMedical Image Analysis
#index3098316
#% 
#!
  
#*Simulation of cardiac pathologies using an electromechanical biventricular model and XMR interventional imaging.
#@Maxime Sermesant,Kawal S. Rhode,Gerardo I. Sanchez-Ortiz,Oscar Camara,R. Andriantsimiavona,Sanjeet Hegde,Daniel Rueckert,Pier Lambiase,Clifford Bucknall,Eric Rosenthal,Herve Delingette,Derek L. G. Hill,Nicholas Ayache,Reza Razavi
#t2005
#cMedical Image Analysis
#index3098066
#% 
#!
  
#*Automatic detection and segmentation of evolving processes in 3D medical images: Application to multiple sclerosis.
#@David Rey,Gérard Subsol,Hervé Delingette,Nicholas Ayache
#t2002
#cMedical Image Analysis
#index3098169
#% 
#!
  
#*Validation of vessel-based registration for correction of brain shift.
#@Ingerid Reinertsen,Maxime Descoteaux,Kaleem Siddiqi,D. Louis Collins
#t2007
#cMedical Image Analysis
#index3097947
#% 
#!
  
#*Extracting skeletal muscle fiber fields from noisy diffusion tensor data.
#@David I. W. Levin,Benjamin Gilles,Burkhard Mädler,Dinesh K. Pai
#t2011
#cMedical Image Analysis
#index3098292
#% 
#!
  
#*A variational framework for integrating segmentation and registration through active contours.
#@Anthony J. Yezzi,Lilla Zöllei,Tina Kapur
#t2003
#cMedical Image Analysis
#index3098158
#% 
#!
  
#*Boundary and medial shape analysis of the hippocampus in schizophrenia.
#@Martin Styner,Jeffrey A. Lieberman,Dimitrios Pantazis,Guido Gerig
#t2004
#cMedical Image Analysis
#index3098086
#% 
#!
  
#*United Snakes.
#@Jianming Liang,Tim McInerney,Demetri Terzopoulos
#t2006
#cMedical Image Analysis
#index3098010
#% 
#!
  
#*Teaching medical image analysis with the Insight Toolkit.
#@Damion Shelton,George D. Stetten,Stephen R. Aylward,Luis Ibáñez,Aaron Cois,Charles Stewart
#t2005
#cMedical Image Analysis
#index3098129
#% 
#!
  
#*A brain tumor segmentation framework based on outlier detection.
#@Marcel Prastawa,Elizabeth Bullitt,Sean Ho,Guido Gerig
#t2004
#cMedical Image Analysis
#index3098110
#% 
#!
  
#*3D image segmentation of deformable objects with joint shape-intensity prior models using level sets.
#@Jing Yang,James S. Duncan
#t2004
#cMedical Image Analysis
#index3098096
#% 
#!
  
#*Towards pointwise motion tracking in echocardiographic image sequences - Comparing the reliability of different features for speckle tracking.
#@Weichuan Yu,Ping Yan,Albert J. Sinusas,Karl Thiele,James S. Duncan
#t2006
#cMedical Image Analysis
#index3098031
#% 
#!
  
#*Unsupervised dealiasing and denoising of color-Doppler data.
#@Stéphan Muth,Sarah Dort,Igal A. Sebag,Marie-Josée Blais,Damien Garcia
#t2011
#cMedical Image Analysis
#index3098302
#% 
#!
  
#*Spatio-temporal directional filtering for improved inversion of MR elastography images.
#@Armando Manduca,David S. Lake,S. A. Kruse,Richard L. Ehman
#t2003
#cMedical Image Analysis
#index3098050
#% 
#!
  
#*Medical image analysis : Foreword.
#@Russel Taylor,Stéphane Lavallée
#t1999
#cMedical Image Analysis
#index3098251
#% 
#!
  
#*Grid powered nonlinear image registration with locally adaptive regularization.
#@Radu Stefanescu,Xavier Pennec,Nicholas Ayache
#t2004
#cMedical Image Analysis
#index3098092
#% 
#!
  
#*Filter learning: Application to suppression of bony structures from chest radiographs.
#@Marco Loog,Bram van Ginneken,Arnold M. R. Schilham
#t2006
#cMedical Image Analysis
#index3098038
#% 
#!
  
#*Erratum to: "Validation of dynamic heart models obtained using non-linear registration for virtual reality training, planning, and guidance of minimally invasive cardiac surgeries" [Medical Image Analysis 8 (2004) 387-401].
#@Marcin Wierzbicki,Maria Drangova,Gerard Guiraudon,Terry M. Peters
#t2005
#cMedical Image Analysis
#index3098068
#% 
#!
  
#*Combinative multi-scale level set framework for echocardiographic image segmentation.
#@Ning Lin,Weichuan Yu,James S. Duncan
#t2003
#cMedical Image Analysis
#index3098138
#%497781
#%496897
#%908467
#!
  
#*A scheme for automatically building three-dimensional morphometric anatomical atlases: application to a skull atlas.
#@Gérard Subsol,Jean-Philippe Thirion,Nicholas Ayache
#t1998
#cMedical Image Analysis
#index3098277
#% 
#!
  
#*Guest Editorial.
#@W. Eric L. Grimson,Ron Kikinis
#t2000
#cMedical Image Analysis
#index3098236
#% 
#!
  
#*A Monte Carlo approach to rolling leukocyte tracking in vivo.
#@Jing Cui,Scott T. Acton,Zongli Lin
#t2006
#cMedical Image Analysis
#index3098022
#% 
#!
  
#*Estimation of the partial volume effect in MRI.
#@Miguel Ángel González Ballester,Andrew Zisserman,Michael Brady
#t2002
#cMedical Image Analysis
#index3098177
#% 
#!
  
#*Computerized detection of pulmonary nodules in chest radiographs based on morphological features and wavelet snake model.
#@Bilgin Keserci,Hiroyuki Yoshida
#t2002
#cMedical Image Analysis
#index3098186
#% 
#!
  
#*MAP MRF joint segmentation and registration of medical images.
#@Paul P. Wyatt,J. Alison Noble
#t2003
#cMedical Image Analysis
#index3098083
#% 
#!
  
#*Tuning and comparing spatial normalization methods.
#@Steven Robbins,Alan C. Evans,D. Louis Collins,Sue Whitesides
#t2004
#cMedical Image Analysis
#index3098101
#% 
#!
  
#*A three-component deformation model for image-guided surgery.
#@Philip J. Edwards,Derek L. G. Hill,John A. Little,David J. Hawkes
#t1998
#cMedical Image Analysis
#index3098269
#% 
#!
  
#*A new variational shape-from-orientation approach to correcting intensity inhomogeneities in magnetic resonance images.
#@Shang-Hong Lai,Ming Fang
#t1999
#cMedical Image Analysis
#index3098246
#% 
#!
  
#*The effects of physical constraints in laparoscopic surgery.
#@Antony J. Hodgson,John G. Person,S. E. Salcudean,Alex G. Nagy
#t1999
#cMedical Image Analysis
#index3098264
#% 
#!
  
#*Segmentation of brain 3D MR images using level sets and dense registration.
#@C. Baillard,Pierre Hellier,Christian Barillot
#t2001
#cMedical Image Analysis
#index3098209
#% 
#!
  
#*Inferring brain variability from diffeomorphic deformations of currents: An integrative approach.
#@Stanley Durrleman,Xavier Pennec,Alain Trouvé,Paul M. Thompson,Nicholas Ayache
#t2008
#cMedical Image Analysis
#index3097913
#% 
#!
  
#*Non-rigid registration by geometry-constrained diffusion.
#@Per Rønsholt Andresen,Mads Nielsen
#t2001
#cMedical Image Analysis
#index3098195
#% 
#!
  
#*Structural and radiometric asymmetry in brain images.
#@Sarang C. Joshi,Peter Lorenzen,Guido Gerig,Elizabeth Bullitt
#t2003
#cMedical Image Analysis
#index3098149
#% 
#!
  
#*From colour to tissue histology: Physics-based interpretation of images of pigmented skin lesions.
#@Ela Claridge,Symon Cotton,Per Hall,Marc Moncrieff
#t2003
#cMedical Image Analysis
#index3098144
#%407178
#!
  
#*Detecting the brain surface in sparse MRI using boundary models.
#@Patrick Marais,J. Michael Brady
#t2000
#cMedical Image Analysis
#index3098218
#% 
#!
  
#*Shaving diffusion tensor images in discriminant analysis: A study into schizophrenia.
#@Matthan W. A. Caan,Koen Vermeer,Lucas J. van Vliet,Charles B. L. M. Majoie,Bart Peters,G. J. den Heeten,Frans M. Vos
#t2006
#cMedical Image Analysis
#index3097989
#% 
#!
  
#*Quantitative vertebral morphometry using neighbor-conditional shape models.
#@Marleen de Bruijne,Michael T. Lund,László B. Tankó,Paola Pettersen,Mads Nielsen
#t2007
#cMedical Image Analysis
#index3097926
#%346179
#%498001
#!
  
#*Atlas-assisted localization analysis of functional images.
#@Wieslaw L. Nowinski,A. Thirunavuukarasuu
#t2001
#cMedical Image Analysis
#index3098204
#% 
#!
  
#*Clinical validation of vessel-based registration for correction of brain-shift.
#@Ingerid Reinertsen,F. Lindseth,G. Unsgård,D. Louis Collins
#t2007
#cMedical Image Analysis
#index3097948
#% 
#!
  
#*Automatic detection of microaneurysms in color fundus images.
#@Thomas Walter,Pascale Massin,Ali Erginay,Richard Ordonez,Clotilde Jeulin,Jean-Claude Klein
#t2007
#cMedical Image Analysis
#index3097929
#% 
#!
  
#*Detection and analysis of statistical differences in anatomical shape.
#@Polina Golland,W. Eric L. Grimson,Martha Elizabeth Shenton,Ron Kikinis
#t2005
#cMedical Image Analysis
#index3098049
#% 
#!
  
#*Recovery of respiratory motion and deformation of the liver using laparoscopic freehand 3D ultrasound system.
#@Masahiko Nakamoto,Hiroaki Hirayama,Yoshinobu Sato,Kozo Konishi,Yoshihiro Kakeji,Makoto Hashizume,Shinichi Tamura
#t2007
#cMedical Image Analysis
#index3097961
#% 
#!
  
#*Measuring orthopedic implant wear on standard radiographs with a precision in the 10 μm-range.
#@Kathrin Burckhardt,Claudio Dora,Christian Gerber,Jürg Hodler,Gábor Székely
#t2006
#cMedical Image Analysis
#index3097982
#% 
#!
  
#*Spatiotemporal clustering of fMRI time series in the spectral domain.
#@François G. Meyer,Jatuporn Chinrungrueng
#t2005
#cMedical Image Analysis
#index3098046
#% 
#!
  
#*An atlas-based method to compensate for brain shift: Preliminary results.
#@Prashanth Dumpuri,Reid Carleton Thompson,Benoit M. Dawant,Aize Cao,Michael I. Miga
#t2007
#cMedical Image Analysis
#index3097941
#% 
#!
  
#*Evaluating a robust contour tracker on echocardiographic sequences.
#@Gary Jacob,J. Alison Noble,Miguel Mulet-Parada,Andrew Blake
#t1999
#cMedical Image Analysis
#index3098240
#% 
#!
  
#*Model extraction from magnetic resonance volume data using the deformable pyramid.
#@Jyrki Lötjönen,Pierre-Jean Reissman,Isabelle E. Magnin,Toivo Katila
#t1999
#cMedical Image Analysis
#index3098255
#% 
#!
  
#*A hybrid framework for 3D medical image segmentation.
#@Ting Chen,Dimitris N. Metaxas
#t2005
#cMedical Image Analysis
#index3098067
#% 
#!
  
#*Nonlinear registration of longitudinal images and measurement of change in regions of interest.
#@Dominic Holland,Anders M. Dale
#t2011
#cMedical Image Analysis
#index3098312
#% 
#!
  
#*Sensorless freehand 3D ultrasound in real tissue: Speckle decorrelation without fully developed speckle.
#@Andrew H. Gee,R. James Housden,Peter Hassenpflug,Graham M. Treece,Richard W. Prager
#t2006
#cMedical Image Analysis
#index3097979
#% 
#!
  
#*Symbolic description of intracerebral vessels segmented from magnetic resonance angiograms and evaluation by comparison with X-ray angiograms.
#@Elizabeth Bullitt,Stephen R. Aylward,J. Keith Smith,Suresh K. Mukherji,Michael R. Jiroutek,Keith E. Muller
#t2001
#cMedical Image Analysis
#index3098201
#% 
#!
  
#*Generation of variable anatomical models for surgical training simulators.
#@Raimundo Sierra,Gabriel Zsemlye,Gábor Székely,Michael Bajka
#t2006
#cMedical Image Analysis
#index3098007
#% 
#!
  
#*Electrocardiographic imaging of atrial and ventricular electrical activation.
#@Bernhard Tilg,Gerald Fischer,Robert Modre,Friedrich Hanser,Bernd Messnarz,Franz Xaver Roithinger
#t2003
#cMedical Image Analysis
#index3098159
#% 
#!
  
#*In vivo strain and stress estimation of the heart left and right ventricles from MRI images.
#@Zhenhua Hu,Dimitris N. Metaxas,Leon Axel
#t2003
#cMedical Image Analysis
#index3098155
#% 
#!
  
#*Volume distribution of cerebrospinal fluid using multispectral MR imaging.
#@Arvid Lundervold,Torfinn Taxt,Lars Ersland,Anne Marie Fenstad
#t2000
#cMedical Image Analysis
#index3098227
#% 
#!
  
#*Knowledge-based interpolation of curves: Application to femoropopliteal arterial centerline restoration.
#@Tejas Rakshe,Dominik Fleischmann,Jarrett Rosenberg,Justus E. Roos,Sandy Napel
#t2007
#cMedical Image Analysis
#index3097964
#% 
#!
  
#*Mapping techniques for aligning sulci across multiple brains.
#@Duygu Tosun,Maryam E. Rettmann,Jerry L. Prince
#t2004
#cMedical Image Analysis
#index3098120
#% 
#!
  
#*The development and evaluation of a three-dimensional ultrasound-guided breast biopsy apparatus.
#@Kathleen J. M. Surry,Wendy L. Smith,L. J. Campbell,Gregory R. Mills,Dónal B. Downey,Aaron Fenster
#t2002
#cMedical Image Analysis
#index3098168
#% 
#!
  
#*A survey of medical image registration.
#@J. B. Antoine Maintz,Max A. Viergever
#t1998
#cMedical Image Analysis
#index3098284
#% 
#!
  
#*A diffusion approach to labeling rows and columns in an irregular array.
#@Peter Salamon,Ben Felts,Carol Hand,Alfonso Limon,Jack Rose,Jose de la Torre-Bueno
#t2006
#cMedical Image Analysis
#index3098028
#% 
#!
  
#*Computer technology in detection and staging of prostate carcinoma: A review.
#@Yanong Zhu,Stuart Williams,Reyer Zwiggelaar
#t2006
#cMedical Image Analysis
#index3098021
#% 
#!
  
#*Rigid-body point-based registration: The distribution of the target registration error when the fiducial registration errors are given.
#@A. Seginer
#t2011
#cMedical Image Analysis
#index3098317
#% 
#!
  
#*Two-dimensional spatial and temporal displacement and deformation field fitting from cardiac magnetic resonance tagging.
#@Patrick Clarysse,C. Basset,L. Khouas,Pierre Croisille,Denis Friboulet,C. Odet,Isabelle E. Magnin
#t2000
#cMedical Image Analysis
#index3098233
#% 
#!
  
#*A comparison of freehand three-dimensional ultrasound reconstruction techniques.
#@Robert Rohling,Andrew H. Gee,Laurence H. Berman
#t1999
#cMedical Image Analysis
#index3098261
#% 
#!
  
#*Three-dimensional computer vision for tooth restoration.
#@Dietrich Paulus,Matthias Wolf,Sebastian Meller,Heinrich Niemann
#t1999
#cMedical Image Analysis
#index3098258
#% 
#!
  
#*Medical image analysis: Foreword.
#@Chris J. Taylor,J. Alison Noble
#t1999
#cMedical Image Analysis
#index3098254
#% 
#!
  
#*Cardiac function estimation from MRI using a heart model and data assimilation: Advances and difficulties.
#@Maxime Sermesant,Philippe Moireau,Oscar Camara,Jacques Sainte-Marie,R. Andriantsimiavona,Robert Cimrman,Derek L. G. Hill,Dominique Chapelle,Reza Razavi
#t2006
#cMedical Image Analysis
#index3097968
#% 
#!
  
#*Diffusion-enhanced visualization and quantification of vascular anomalies in three-dimensional rotational angiography: Results of an in-vitro evaluation.
#@Erik H. W. Meijering,Wiro J. Niessen,Joachim Weickert,Max A. Viergever
#t2002
#cMedical Image Analysis
#index3098183
#% 
#!
  
#*Ultrasonic and elasticity imaging to model disease-induced changes in soft-tissue structure.
#@Pawan Chaturvedi,Michael F. Insana,Timothy J. Hall
#t1998
#cMedical Image Analysis
#index3098275
#% 
#!
  
#*Statistical shape analysis using non-Euclidean metrics.
#@Rasmus Larsen,Klaus Baggesen Hilger
#t2003
#cMedical Image Analysis
#index3098137
#% 
#!
  
#*Erratum to: "Analyzing the neocortical fine-structure" [Medical Image Analysis 7 (2003) 251-264].
#@Frithjof Kruggel,Martina K. Brückner,Thomas Arendt,Christopher J. Wiggins,D. Yves von Cramon
#t2006
#cMedical Image Analysis
#index3098032
#% 
#!
  
#*Rigid point feature registration using mutual information.
#@Anand Rangarajan,Haili Chui,James S. Duncan
#t1999
#cMedical Image Analysis
#index3098243
#% 
#!
  
#*Quantifying variability in radiation dose due to respiratory-induced tumor motion.
#@Sarah E. Geneser,Jacob Hinkle,Robert M. Kirby,B. Wang,Bill Salter,S. Joshi
#t2011
#cMedical Image Analysis
#index3098303
#% 
#!
  
#*Nonrigid registration of 3D tensor medical data.
#@Juan Ruiz-Alzola,Carl-Fredrik Westin,Simon K. Warfield,Carlos Alberola,Stefan S. Maier,Ron Kikinis
#t2002
#cMedical Image Analysis
#index3098173
#% 
#!
  
#*Characterization of changes in blood vessel width and tortuosity in retinopathy of prematurity using image analysis.
#@Conor Heneghan,John Flynn,Michael O'Keefe,Mark Cahill
#t2002
#cMedical Image Analysis
#index3098180
#% 
#!
  
#*Accurate assessment of patellar tracking using fiducial and intensity-based fluoroscopic techniques.
#@Thomas S. Y. Tang,N. J. MacIntyre,H. S. Gill,R. A. Fellows,N. A. Hill,D. R. Wilson,Randy E. Ellis
#t2004
#cMedical Image Analysis
#index3098095
#% 
#!
  
#*Adaptive, template moderated, spatially varying statistical classification.
#@Simon K. Warfield,Michael Kaus,Ferenc A. Jolesz,Ron Kikinis
#t2000
#cMedical Image Analysis
#index3098212
#% 
#!
  
#*Editorial.
#@Randy E. Ellis,Terry M. Peters
#t2004
#cMedical Image Analysis
#index3098091
#% 
#!
  
#*Region segmentation using information divergence measures.
#@Lyndon S. Hibbard
#t2004
#cMedical Image Analysis
#index3098109
#% 
#!
  
#*Three-dimensional motion reconstruction and analysis of the right ventricle using tagged MRI.
#@Idith Haber,Dimitris N. Metaxas,Leon Axel
#t2000
#cMedical Image Analysis
#index3098215
#% 
#!
  
#*Modeling the 3D coronary tree for labeling purposes.
#@Claire Chalopin,Gérard Finet,Isabelle E. Magnin
#t2001
#cMedical Image Analysis
#index3098198
#% 
#!
  
#*Case study: an evaluation of user-assisted hierarchical watershed segmentation.
#@Joshua E. Cates,Ross T. Whitaker,Greg M. Jones
#t2005
#cMedical Image Analysis
#index3098057
#% 
#!
  
#*Atlas stratification.
#@Daniel J. Blezek,James V. Miller
#t2007
#cMedical Image Analysis
#index3097949
#%497885
#%1045946
#%497632
#%1031341
#%1031402
#!
  
#*Adaptive Markov modeling for mutual-information-based, unsupervised MRI brain-tissue classification.
#@Suyash P. Awate,Tolga Tasdizen,Norman L. Foster,Ross T. Whitaker
#t2006
#cMedical Image Analysis
#index3098013
#% 
#!
  
#*Pulmonary fissure segmentation on CT.
#@Jingbin Wang,Margrit Betke,Jane P. Ko
#t2006
#cMedical Image Analysis
#index3097967
#% 
#!
  
#*Methods for modeling and predicting mechanical deformations of the breast under external perturbations.
#@Fred S. Azar,Dimitris N. Metaxas,Mitchell D. Schnall
#t2002
#cMedical Image Analysis
#index3098167
#% 
#!
  
#*Irregularity index: A new border irregularity measure for cutaneous melanocytic lesions.
#@Tim K. Lee,David I. McLean,M. Stella Atkins
#t2003
#cMedical Image Analysis
#index3098119
#% 
#!
  
#*Automated kymograph analysis for profiling axonal transport of secretory granules.
#@Amit Mukherjee,Brian Jenkins,Cheng Fang,Richard J. Radke,Gary Banker,Badrinath Roysam
#t2011
#cMedical Image Analysis
#index3098294
#% 
#!
  
#*Removal of local and biased global maxima in intensity-based registration.
#@Olivier Salvado,David L. Wilson
#t2007
#cMedical Image Analysis
#index3097930
#% 
#!
  
#*Welcome to the first issue of the new millennium.
#@Nicholas Ayache,James S. Duncan
#t2000
#cMedical Image Analysis
#index3098230
#% 
#!
  
#*3D multi-scale vessel enhancement filtering based on curvature measurements: application to time-of-flight MRA.
#@Brian E. Chapman,Dennis L. Parker
#t2005
#cMedical Image Analysis
#index3098040
#% 
#!
  
#*Alignment of magnetic-resonance brain datasets with the stereotactical coordinate system.
#@Frithjof Kruggel,D. Yves von Cramon
#t1999
#cMedical Image Analysis
#index3098239
#% 
#!
  
#*From arteriographies to computational flow in saccular aneurisms: the INRIA experience.
#@Jean-Daniel Boissonnat,Raphaëlle Chaine,Pascal Frey,Grégoire Malandain,S. Salmon,E. Saltel,M. Thiriet
#t2005
#cMedical Image Analysis
#index3098080
#% 
#!
  
#*Clinically evaluated procedure for the reconstruction of vocal fold vibrations from endoscopic digital high-speed videos.
#@Jörg Lohscheller,Hikmet Toy,Frank Rosanowski,Ulrich Eysholdt,Michael Döllinger
#t2007
#cMedical Image Analysis
#index3097953
#% 
#!
  
#*Validation of dynamic heart models obtained using non-linear registration for virtual reality training, planning, and guidance of minimally invasive cardiac surgeries.
#@Marcin Wierzbicki,Maria Drangova,Gerard Guiraudon,Terry M. Peters
#t2004
#cMedical Image Analysis
#index3098103
#% 
#!
  
#*Cadaver validation of intensity-based ultrasound to CT registration.
#@Graeme P. Penney,Dean C. Barratt,Carolyn S. K. Chan,Mike Slomczykowski,Timothy J. Carter,Philip J. Edwards,David J. Hawkes
#t2006
#cMedical Image Analysis
#index3098008
#% 
#!
  
#*A spatiotemporal statistical atlas of motion for the quantification of abnormal myocardial tissue velocities.
#@Nicolas Duchateau,Mathieu De Craene,Gemma Piella,Etelvino Silva,Adelina Doltra,Marta Sitges,Bart Bijnens,Alejandro F. Frangi
#t2011
#cMedical Image Analysis
#index3098293
#% 
#!
  
#*Cardiac magnetic resonance imaging in small animal models of human heart failure.
#@Matthias Nahrendorf,Karl-Heinz Hiller,Kai Hu,Georg Ertl,Axel Haase,Wolfgang R. Bauer
#t2003
#cMedical Image Analysis
#index3098126
#% 
#!
  
#*4D deformable models with temporal constraints: application to 4D cardiac image segmentation.
#@Johan Montagnat,Hervé Delingette
#t2005
#cMedical Image Analysis
#index3098056
#% 
#!
  
#*Application of independent component analysis to dynamic contrast-enhanced imaging for assessment of cerebral blood perfusion.
#@X. Y. Wu,G. R. Liu
#t2007
#cMedical Image Analysis
#index3097920
#% 
#!
  
#*Semi-automatic level-set based segmentation and stenosis quantification of the internal carotid artery in 3D CTA data sets.
#@Holger Scherl,Joachim Hornegger,Marcus Prümmer,Michael Lell
#t2007
#cMedical Image Analysis
#index3097958
#% 
#!
  
#*Semiautomatic segmentation of brain exterior in magnetic resonance images driven by empirical procedures and anatomical knowledge.
#@Andrew J. Worth,Nikos Makris,James W. Meyer,Verne S. Caviness Jr.,David N. Kennedy
#t1998
#cMedical Image Analysis
#index3098276
#% 
#!
  
#*A fully automatic and robust brain MRI tissue classification method.
#@Chris A. Cocosco,Alex P. Zijdenbos,Alan C. Evans
#t2003
#cMedical Image Analysis
#index3097986
#% 
#!
  
#*Automatic rib segmentation and labeling in computed tomography scans using a general framework for detection, recognition and segmentation of objects in volumetric data.
#@Joes Staal,Bram van Ginneken,Max A. Viergever
#t2007
#cMedical Image Analysis
#index3097927
#% 
#!
  
#*Correction of probe pressure artifacts in freehand 3D ultrasound.
#@Graham M. Treece,Richard W. Prager,Andrew H. Gee,Laurence H. Berman
#t2002
#cMedical Image Analysis
#index3098174
#% 
#!
  
#*Automated segmentation of the optic nerve head for diagnosis of glaucoma.
#@Radim Chrástek,Matthias Wolf,Klaus Donath,Heinrich Niemann,Dietrich Paulus,Torsten Hothorn,Berthold Lausen,Robert Lämmer,Christian Y. Mardin,Georg Michelson
#t2005
#cMedical Image Analysis
#index3098047
#% 
#!
  
#*Fast extraction of minimal paths in 3D images and applications to virtual endoscopy.
#@Thomas Deschamps,Laurent D. Cohen
#t2001
#cMedical Image Analysis
#index3098193
#% 
#!
  
#*Statistical deformable bone models for robust 3D surface extrapolation from sparse data.
#@Kumar T. Rajamani,Martin Andreas Styner,Haydar Talib,Guoyan Zheng,Lutz-Peter Nolte,Miguel Ángel González Ballester
#t2007
#cMedical Image Analysis
#index3097925
#% 
#!
  
#*Automatic labelling of the human cortical surface using sulcal basins.
#@Gabriele Lohmann,D. Yves von Cramon
#t2000
#cMedical Image Analysis
#index3098220
#% 
#!
  
#*Registration of medical images using an interpolated closest point transform: method and validation.
#@Zhujiang Cao,Shiyan Pan,Rui Li,Ramya Balachandran,J. Michael Fitzpatrick,William C. Chapman,Benoit M. Dawant
#t2004
#cMedical Image Analysis
#index3098117
#% 
#!
  
#*Comparative evaluation of multiresolution optimization strategies for multimodality image registration by maximization of mutual information.
#@Frederik Maes,Dirk Vandermeulen,Paul Suetens
#t1999
#cMedical Image Analysis
#index3098257
#% 
#!
  
#*BrainSuite: An automated cortical surface identification tool.
#@David W. Shattuck,Richard M. Leahy
#t2002
#cMedical Image Analysis
#index3098160
#% 
#!
  
#*Coronary vessel trees from 3D imagery: A topological approach.
#@Andrzej Szymczak,Arthur Stillman,Allen Tannenbaum,Konstantin Mischaikow
#t2006
#cMedical Image Analysis
#index3098029
#% 
#!
  
#*Discriminant snakes for 3D reconstruction of anatomical organs.
#@Xose Manuel Pardo,Petia Radeva,Diego Cabello
#t2003
#cMedical Image Analysis
#index3098033
#% 
#!
  
#*Incorporating a statistically based shape model into a system for computer-assisted anterior cruciate ligament surgery.
#@Markus Fleute,Stéphane Lavallée,Rémi Julliard
#t1999
#cMedical Image Analysis
#index3098253
#% 
#!
  
#*Probabilistic vessel axis tracing and its application to vessel segmentation with stream surfaces and minimum cost paths.
#@Wilbur C. K. Wong,Albert C. S. Chung
#t2007
#cMedical Image Analysis
#index3097940
#% 
#!
  
#*Towards a model of lung biomechanics: pulmonary kinematics via registration of serial lung images.
#@Tessa A. Sundaram,James C. Gee
#t2005
#cMedical Image Analysis
#index3098070
#% 
#!
  
#*Intracranial vessel segmentation from time-of-flight MRA using pre-processing of the MIP Z-buffer: accuracy of the ZBS algorithm.
#@Brian E. Chapman,Janet O. Stapelton,Dennis L. Parker
#t2004
#cMedical Image Analysis
#index3098089
#% 
#!
  
#*Activation detection in diffuse optical imaging by means of the general linear model.
#@Julien Cohen-Adad,S. Chapuisat,Julien Doyon,Serge Rossignol,Jean-Marc Lina,Habib Benali,Frederic Lesage
#t2007
#cMedical Image Analysis
#index3097963
#% 
#!
  
#*A viscous fluid model for multimodal non-rigid image registration using mutual information.
#@Emiliano D'Agostino,Frederik Maes,Dirk Vandermeulen,Paul Suetens
#t2003
#cMedical Image Analysis
#index3098130
#%637057
#%497185
#!
  
#*Patient specific finite element model of the face soft tissues for computer-assisted maxillofacial surgery.
#@Matthieu Chabanas,Vincent Luboz,Yohan Payan
#t2003
#cMedical Image Analysis
#index3098156
#% 
#!
  
#*Bone labelling on micro-magnetic resonance images.
#@Theocharis Antoniadis,Jean-Pierre Scarpelli,Jean-Pierre Ruaud,Patrick Gonord,Geneviève Guillot
#t1999
#cMedical Image Analysis
#index3098248
#% 
#!
  
#*Intensity non-uniformity correction in MRI: Existing methods and their validation.
#@Boubakeur Belaroussi,Julien Milles,Sabin Carme,Yue Min Zhu,Hugues Benoit-Cattin
#t2006
#cMedical Image Analysis
#index3097980
#% 
#!
  
#*Fusion of contrast-enhanced breast MR and mammographic imaging data.
#@Christian P. Behrenbruch,Kostas Marias,Paul A. Armitage,Margaret Yam,Niall Moore,Ruth E. English,Jane Clarke,Michael Brady
#t2003
#cMedical Image Analysis
#index3098152
#% 
#!
  
#*A symbolic environment for visualizing activated foci in functional neuroimaging datasets.
#@Kelly Rehm,Kamakshi Lakshminaryan,Sally Frutiger,Kirt Schaper,De Witt L. Sumners,Stephen C. Strother,Jon R. Anderson,David A. Rottenberg
#t1998
#cMedical Image Analysis
#index3098267
#% 
#!
  
#*Hierarchical statistical shape analysis and prediction of sub-cortical brain structures.
#@Anil Rao,Paul Aljabar,Daniel Rueckert
#t2008
#cMedical Image Analysis
#index3097912
#% 
#!
  
#*Automated classification of lung bronchovascular anatomy in CT using AdaBoost.
#@Robert A. Ochs,Jonathan G. Goldin,Fereidoun Abtin,Hyun J. Kim,Kathleen Brown,Poonam Batra,Donald Roback,Michael F. McNitt-Gray,Matthew S. Brown
#t2007
#cMedical Image Analysis
#index3097955
#% 
#!
  
#*A robotic indenter for minimally invasive measurement and characterization of soft tissue response.
#@Evren Samur,Mert Sedef,Cagatay Basdogan,Levent Avtan,Oktay Duzgun
#t2007
#cMedical Image Analysis
#index3097950
#% 
#!
  
#*Extraction of the midsagittal plane from morphological neuroimages using the Kullback-Leibler's measure.
#@Ihar Volkau,K. N. Bhanu Prakash,Anand Ananthasubramaniam,Aamer Aziz,Wieslaw L. Nowinski
#t2006
#cMedical Image Analysis
#index3097984
#% 
#!
  
#*Laser-scan endoscope system for intraoperative geometry acquisition and surgical robot safety management.
#@Mitsuhiro Hayashibe,Naoki Suzuki,Yoshihiko Nakamura
#t2006
#cMedical Image Analysis
#index3097970
#% 
#!
  
#*Detection and segmentation of drusen deposits on human retina: Potential in the diagnosis of age-related macular degeneration.
#@Konstantinos Rapantzikos,Michalis E. Zervakis,K. Balas
#t2003
#cMedical Image Analysis
#index3098131
#% 
#!
  
#*Automatic inference of articulated spine models in CT images using high-order Markov Random Fields.
#@Samuel Kadoury,Hubert Labelle,Nikos Paragios
#t2011
#cMedical Image Analysis
#index3098311
#% 
#!
  
#*White matter fiber tract segmentation in DT-MRI using geometric flows.
#@Lisa Jonasson,Xavier Bresson,Patric Hagmann,Olivier Cuisenaire,Reto Meuli,Jean-Philippe Thiran
#t2005
#cMedical Image Analysis
#index3098058
#% 
#!
  
#*Unsupervised 4D myocardium segmentation with a Markov Random Field based deformable model.
#@Lucilio Cordero-Grande,Gonzalo Vegas-Sánchez-Ferrero,Pablo Casaseca-de-la-Higuera,J. Alberto San-Román-Calvar,Ana Revilla-Orodea,Marcos Martín-Fernández,Carlos Alberola-López
#t2011
#cMedical Image Analysis
#index3098296
#% 
#!
  
#*Multiple q-shell diffusion propagator imaging.
#@Maxime Descoteaux,Rachid Deriche,Denis Le Bihan,Jean-François Mangin,Cyril Poupon
#t2011
#cMedical Image Analysis
#index3098304
#% 
#!
  
#*Image registration via level-set motion: Applications to atlas-based segmentation.
#@Baba C. Vemuri,J. Ye,Y. Chen,Christiana Morison Leonard
#t2003
#cMedical Image Analysis
#index3098140
#% 
#!
  
#*Brachytherapy optimal planning with application to intravascular radiation therapy.
#@Payman Sadegh,Firas A. Mourtada,Russell H. Taylor,James H. Anderson
#t1999
#cMedical Image Analysis
#index3098262
#% 
#!
  
#*Building 3D sulcal models using local geometry.
#@Angela Caunce,Christopher J. Taylor
#t2001
#cMedical Image Analysis
#index3098207
#% 
#!
  
#*Acquisition, segmentation and tracking of the cerebral vascular tree on 3D magnetic resonance angiography images.
#@Nicolas Flasque,Michel Desvignes,Jean-Marc Constans,Marinette Revenu
#t2001
#cMedical Image Analysis
#index3098206
#% 
#!
  
#*Reslicing axially sampled 3D shapes using elliptic Fourier descriptors.
#@Yongwon Jeong,Richard J. Radke
#t2007
#cMedical Image Analysis
#index3097956
#% 
#!
  
#*Automatic construction of eigenshape models by direct optimization.
#@Aaron C. W. Kotcheff,Christopher J. Taylor
#t1998
#cMedical Image Analysis
#index3098282
#% 
#!
  
#*Probe trajectory interpolation for 3D reconstruction of freehand ultrasound.
#@Pierrick Coupé,Pierre Hellier,Xavier Morandi,Christian Barillot
#t2007
#cMedical Image Analysis
#index3097939
#% 
#!
  
#*Scale-invariant registration of monocular endoscopic images to CT-scans for sinus surgery.
#@Darius Burschka,Ming Li,Masaru Ishii,Russell H. Taylor,Gregory D. Hager
#t2005
#cMedical Image Analysis
#index3098079
#% 
#!
  
#*A deformable digital brain atlas system according to Talairach and Tournoux.
#@Klaus A. Ganser,Hartmut Dickhaus,Roland Metzner,Christian Rainer Wirtz
#t2004
#cMedical Image Analysis
#index3098102
#% 
#!
  
#*Towards model-based analysis of cardiac MR tagging data: Relation between left ventricular shear strain and myofiber orientation.
#@Sander Ubbink,Peter Bovendeerd,Tammo Delhaas,Theo Arts,Frans N. van de Vosse
#t2006
#cMedical Image Analysis
#index3097991
#% 
#!
  
#*A non-rigid registration approach for quantifying myocardial contraction in tagged MRI using generalized information measures.
#@Nicolas Rougon,Caroline Petitjean,Françoise J. Prêteux,Philippe Cluzel,Philippe Grenier
#t2005
#cMedical Image Analysis
#index3098039
#% 
#!
  
#*Growth modeling of human mandibles using non-Euclidean metrics.
#@Klaus Baggesen Hilger,Rasmus Larsen,Mark C. Wrobel
#t2003
#cMedical Image Analysis
#index3098146
#% 
#!
  
#*Numerical determination of the susceptibility caused geometric distortions in magnetic resonance imaging.
#@Stefan Burkhardt,Achim Schweikard,Rainer Burgkart
#t2003
#cMedical Image Analysis
#index3098151
#% 
#!
  
#*Efficient MR image reconstruction for compressed MR imaging.
#@Junzhou Huang,Shaoting Zhang,Dimitris N. Metaxas
#t2011
#cMedical Image Analysis
#index3133116
#%2802201
#%2889349
#%1343180
#!
  
#*Morphological appearance manifolds for group-wise morphometric analysis.
#@Naixiang Lian,Christos Davatzikos
#t2011
#cMedical Image Analysis
#index3133110
#% 
#!
  
#*An integrated approach to segmentation and nonrigid registration for application in image-guided pelvic radiotherapy.
#@Chao Lu,Sudhakar Chelikani,Xenophon Papademetris,Jonathan Knisely,Michael F. Milosevic,Zhe Chen,David A. Jaffray,Lawrence H. Staib,James S. Duncan
#t2011
#cMedical Image Analysis
#index3133122
#% 
#!
  
#*Editorial.
#@Max A. Viergever,Tianzi Jiang,Nassir Navab,Josien P. W. Pluim
#t2011
#cMedical Image Analysis
#index3133117
#% 
#!
  
#*Pop out many small structures from a very large microscopic image.
#@Elena Bernardis,Stella X. Yu
#t2011
#cMedical Image Analysis
#index3133118
#% 
#!
  
#*An atlas-navigated optimal medial axis and deformable model algorithm (NOMAD) for the segmentation of the optic nerves and chiasm in MR and CT images.
#@Jack H. Noble,Benoit M. Dawant
#t2011
#cMedical Image Analysis
#index3133123
#% 
#!
  
#*Self-encoded marker for optical prospective head motion correction in MRI.
#@Christoph Forman,Murat Aksoy,Joachim Hornegger,Roland Bammer
#t2011
#cMedical Image Analysis
#index3133109
#%127956
#!
  
#*Active deformation fields: Dense deformation field estimation for atlas-based segmentation using the active contour framework.
#@Sai Subrahmanyam Gorthi,Valerie Duay,Xavier Bresson,Meritxell Bach Cuadra,F. Javier Sánchez Castro,Claudio Pollo,Abdelkarim Allal,Jean-Philippe Thiran
#t2011
#cMedical Image Analysis
#index3133119
#% 
#!
  
#*Automated macular pathology diagnosis in retinal OCT images using multi-scale spatial pyramid and local binary patterns in texture and shape encoding.
#@Yu-Ying Liu,Mei Chen,Hiroshi Ishikawa,Gadi Wollstein,Joel Schuman,James M. Rehg
#t2011
#cMedical Image Analysis
#index3133108
#% 
#!
  
#*2D-3D shape reconstruction of the distal femur from stereo X-ray imaging using statistical shape models.
#@Nora Baka,B. L. Kaptein,Marleen de Bruijne,Theo van Walsum,J. E. Giphart,Wiro J. Niessen,Boudewijn P. F. Lelieveldt
#t2011
#cMedical Image Analysis
#index3133112
#% 
#!
  
#*Anisotropic path searching for automatic neuron reconstruction.
#@Jun Xie,Ting Zhao,Tzumin Lee,Eugene W. Myers,Hanchuan Peng
#t2011
#cMedical Image Analysis
#index3133106
#% 
#!
  
#*On the convergence of EM-like algorithms for image segmentation using Markov random fields.
#@Alexis Roche,Delphine Ribes,Meritxell Bach Cuadra,Gunnar Krüger
#t2011
#cMedical Image Analysis
#index3133115
#% 
#!
  
#*An accurate, fast and robust method to generate patient-specific cubic Hermite meshes.
#@Pablo Lamata,Steven Niederer,David Nordsletten,David C. Barber,Ishani Roy,Rod D. Hose,Nic Smith
#t2011
#cMedical Image Analysis
#index3133107
#% 
#!
  
#*Automatic analysis of diabetic peripheral neuropathy using multi-scale quantitative morphology of nerve fibres in corneal confocal microscopy imaging.
#@M. A. Dabbah,J. Graham,I. Petropoulos,M. Tavakoli,R. A. Malik
#t2011
#cMedical Image Analysis
#index3133114
#% 
#!
  
#*Probabilistic 4D blood flow tracking and uncertainty estimation.
#@Ola Friman,Anja Hennemuth,Andreas Harloff,Jelena Bock,Michael Markl,Heinz-Otto Peitgen
#t2011
#cMedical Image Analysis
#index3133113
#% 
#!
  
#*Spatial regularization of SVM for the detection of diffusion alterations associated with stroke outcome.
#@Rémi Cuingnet,Charlotte Rosso,Marie Chupin,Stéphane Lehericy,Didier Dormont,Habib Benali,Yves Samson,Olivier Colliot
#t2011
#cMedical Image Analysis
#index3133120
#% 
#!
  
#*A high-throughput active contour scheme for segmentation of histopathological imagery.
#@Jun Xu,Andrew Janowczyk,Sharat Chandran,Anant Madabhushi
#t2011
#cMedical Image Analysis
#index3133105
#% 
#!
  
#*Brachytherapy seed reconstruction with joint-encoded C-arm single-axis rotation and motion compensation.
#@Ehsan Dehghan,Ameet K. Jain,Mehdi Moradi,Xu Wen,W. James Morris,Septimiu E. Salcudean,Gabor Fichtinger
#t2011
#cMedical Image Analysis
#index3133121
#% 
#!
  
#*Segmentation of the heart and great vessels in CT images using a model-based adaptation framework.
#@Olivier Ecabert,Jochen Peters,Matthew J. Walker,Thomas Ivanc,Cristian Lorenz,Jens von Berg,Jonathan Lessick,Mani Vembar,Jürgen Weese
#t2011
#cMedical Image Analysis
#index3133111
#% 
#!
  
#*Entropy and Laplacian images: Structural representations for multi-modal registration.
#@Christian Wachinger,Nassir Navab
#t2012
#cMedical Image Analysis
#index3248618
#% 
#!
  
#*A novel approach for improved tractography and quantitative analysis of probabilistic fibre tracking curves.
#@Nagulan Ratnarajah,Andrew Simmons,Oleg Davydov,Ali Hojjatoleslami
#t2012
#cMedical Image Analysis
#index3248610
#% 
#!
  
#*Mediastinal atlas creation from 3-D chest computed tomography images: Application to automated detection and station mapping of lymph nodes.
#@Marco Feuerstein,Ben Glocker,Takayuki Kitasaka,Yoshihiko Nakamura,Shingo Iwano,Kensaku Mori
#t2012
#cMedical Image Analysis
#index3248613
#% 
#!
  
#*Coupled parametric model for estimation of visual field tests based on OCT macular thickness maps, and vice versa, in glaucoma care.
#@Andy Tsai,Joseph Caprioli,Lucy Q. Shen
#t2012
#cMedical Image Analysis
#index3248620
#% 
#!
  
#*Hysteroscopy video summarization and browsing by estimating the physician's attention on video segments.
#@Wilson Gavião,Jacob Scharcanski,Jan-Michael Frahm,Marc Pollefeys
#t2012
#cMedical Image Analysis
#index3248602
#% 
#!
  
#*Automatic segmentation, internal classification, and follow-up of optic pathway gliomas in MRI.
#@Lior Weizman,Liat Ben-Sira,Leo Joskowicz,Shlomi Constantini,Ronit Precel,B. Shofty,Dafna Ben-Bashat
#t2012
#cMedical Image Analysis
#index3248605
#% 
#!
  
#*Generalized likelihood ratio tests for change detection in diffusion tensor images: Application to multiple sclerosis.
#@Hervé Boisgontier,Vincent Noblet,Fabrice Heitz,Lucien Rumbach,Jean-Paul Armspach
#t2012
#cMedical Image Analysis
#index3248603
#% 
#!
  
#*Registration of 3D trans-esophageal echocardiography to X-ray fluoroscopy using image-based probe tracking.
#@Gang Gao,Graeme P. Penney,YingLiang Ma,Nicolas Gogin,Pascal Cathier,Aruna Arujuna,Geraint Morton,Dennis Caulfield,Jaswinder S. Gill,C. Aldo Rinaldi,Jane Hancock,Simon Redwood,Martyn Thomas,Reza Razavi,Geert Gijsbers,Kawal S. Rhode
#t2012
#cMedical Image Analysis
#index3248621
#% 
#!
  
#*Reversible jump MCMC methods for fully automatic motion analysis in tagged MRI.
#@Ihor Smal,Noemí Carranza-Herrezuelo,Stefan Klein,Piotr Wielopolski,Adriaan Moelker,Tirza Springeling,Monique Bernsen,Wiro J. Niessen,Erik Meijering
#t2012
#cMedical Image Analysis
#index3248612
#% 
#!
  
#*Semi-automatic liver tumor segmentation with hidden Markov measure field model and non-parametric distribution estimation.
#@Yrjö Häme,Mika Pollari
#t2012
#cMedical Image Analysis
#index3248623
#% 
#!
  
#*Differential MRI analysis for quantification of low grade glioma growth.
#@Elsa D. Angelini,Julie Delon,Alpha Boubacar Bah,Laurent Capelle,Emmanuel Mandonnet
#t2012
#cMedical Image Analysis
#index3248622
#% 
#!
  
#*Exudate-based diabetic macular edema detection in fundus images using publicly available datasets.
#@Luca Giancardo,Fabrice Meriaudeau,Thomas P. Karnowski,Yaqin Li,Seema Garg,Kenneth W. Tobin,Edward Chaum
#t2012
#cMedical Image Analysis
#index3248616
#% 
#!
  
#*Cardiac motion estimation by joint alignment of tagged MRI sequences.
#@Estanislao Oubel,Mathieu De Craene,Alfred O. Hero,Amir Pourmorteza,Marina Huguet,G. Avegliano,Bart Bijnens,Alejandro F. Frangi
#t2012
#cMedical Image Analysis
#index3248604
#% 
#!
  
#*Contextual computer-aided detection: Improving bright lesion detection in retinal images and coronary calcification identification in CT scans.
#@Clara I. Sánchez,Meindert Niemeijer,Ivana Isgum,Alina V. Dumitrescu,Maria S. A. Suttorp-Schulten,Michael D. Abràmoff,Bram van Ginneken
#t2012
#cMedical Image Analysis
#index3248608
#% 
#!
  
#*Color treatment in endoscopic image classification using multi-scale local color vector patterns.
#@Michael Häfner,Michael Liedlgruber,Andreas Uhl,Andreas Vécsei,Friedrich Wrba
#t2012
#cMedical Image Analysis
#index3248609
#% 
#!
  
#*Max-flow segmentation of the left ventricle by recovering subject-specific distributions via a bound of the Bhattacharyya measure.
#@Ismail Ben Ayed,Hua-mei Chen,Kumaradevan Punithakumar,Ian G. Ross,Shuo Li
#t2012
#cMedical Image Analysis
#index3248617
#% 
#!
  
#*Patient-specific electromechanical models of the heart for the prediction of pacing acute effects in CRT: A preliminary clinical validation.
#@Maxime Sermesant,Radomir Chabiniok,Phani Chinchapatnam,Tommaso Mansi,Florence Billet,Philippe Moireau,Jean-Marc Peyrat,K. Wong,Jatin Relan,Kawal S. Rhode,Matthew Ginks,Pier Lambiase,Herve Delingette,Michel Sorine,C. Aldo Rinaldi,Dominique Chapelle,Reza Razavi,Nicholas Ayache
#t2012
#cMedical Image Analysis
#index3248614
#% 
#!
  
#*Estimation of slipping organ motion by registration with direction-dependent regularization.
#@Alexander Schmidt-Richberg,René Werner,Heinz Handels,Jan Ehrhardt
#t2012
#cMedical Image Analysis
#index3248606
#% 
#!
  
#*Reconstruction of scattered data in fetal diffusion MRI.
#@Estanislao Oubel,Meriam Koob,Colin Studholme,Jean-Louis Dietemann,François Rousseau
#t2012
#cMedical Image Analysis
#index3248625
#% 
#!
  
#*A constrained independent component analysis technique for artery-vein separation of two-photon laser scanning microscopy images of the cerebral microvasculature.
#@Hatef Mehrabian,Liis Lindvere,Bojana Stefanovic,Anne L. Martel
#t2012
#cMedical Image Analysis
#index3248627
#% 
#!
  
#*Towards robust and effective shape modeling: Sparse shape composition.
#@Shaoting Zhang,Yiqiang Zhan,Maneesh Dewan,Junzhou Huang,Dimitris N. Metaxas,Xiang Sean Zhou
#t2012
#cMedical Image Analysis
#index3248615
#% 
#!
  
#*Thoracic respiratory motion estimation from MRI using a statistical model and a 2-D image navigator.
#@Andrew P. King,Christian Buerger,Charalampos Tsoumpas,P. K. Marsden,Tobias Schaeffter
#t2012
#cMedical Image Analysis
#index3248624
#% 
#!
  
#*Regularising limited view tomography using anatomical reference images and information theoretic similarity metrics.
#@Dominique Van de Sompel,Michael Brady
#t2012
#cMedical Image Analysis
#index3248607
#% 
#!
  
#*New methods for MRI denoising based on sparseness and self-similarity.
#@José V. Manjón,Pierrick Coupé,Antonio Buades,D. Louis Collins,Montserrat Robles
#t2012
#cMedical Image Analysis
#index3248611
#% 
#!
  
#*Automatic segmentation of the wire frame of stent grafts from CT data.
#@Almar Klein,J. Adam van der Vliet,Luuk J. Oostveen,Yvonne Hoogeveen,Leo J. Schultze Kool,W. Klaas Jan Renema,Cornelis H. Slump
#t2012
#cMedical Image Analysis
#index3248626
#% 
#!
  
#*An image space approach to Cartesian based parallel MR imaging with total variation regularization.
#@Stephen L. Keeling,Christian Clason,Michael Hintermüller,Florian Knoll,Antoine Laurain,Gregory von Winckel
#t2012
#cMedical Image Analysis
#index3248619
#% 
#!
  
#*Consistent segmentation using a Rician classifier.
#@Snehashis Roy,Aaron Carass,Pierre-Louis Bazin,Susan M. Resnick,Jerry L. Prince
#t2012
#cMedical Image Analysis
#index3309659
#% 
#!
  
#*Automated preoperative planning of femoral stem in total hip arthroplasty from 3D CT data: Atlas-based approach and comparative study.
#@Itaru Otomaru,Masahiko Nakamoto,Yoshiyuki Kagiyama,Masaki Takao,Nobuhiko Sugano,Noriyuki Tomiyama,Yukio Tada,Yoshinobu Sato
#t2012
#cMedical Image Analysis
#index3309668
#% 
#!
  
#*Segmentation of 3D radio frequency echocardiography using a spatio-temporal predictor.
#@Paul C. Pearlman,Hemant D. Tagare,Ben A. Lin,Albert J. Sinusas,James S. Duncan
#t2012
#cMedical Image Analysis
#index3309669
#% 
#!
  
#*Detection of the whole myocardium in 2D-echocardiography for multiple orientations using a geometrically constrained level-set.
#@Thomas Dietenbeck,Martino Alessandrini,Daniel Barbosa,Jan D'hooge,Denis Friboulet,Olivier Bernard
#t2012
#cMedical Image Analysis
#index3309664
#% 
#!
  
#*Construction of 3D MR image-based computer models of pathologic hearts, augmented with histology and optical fluorescence imaging to characterize action potential propagation.
#@Mihaela Pop,Maxime Sermesant,Garry Liu,Jatin Relan,Tommaso Mansi,Alan Soong,Jean-Marc Peyrat,Michael V. Truong,Paul Fefer,Elliot R. McVeigh,Herve Delingette,Alexander Dick,Nicholas Ayache,Graham A. Wright
#t2012
#cMedical Image Analysis
#index3309657
#% 
#!
  
#*Mitral annulus segmentation from four-dimensional ultrasound using a valve state predictor and constrained optical flow.
#@Robert J. Schneider,Douglas P. Perrin,Nikolay V. Vasilyev,Gerald R. Marx,Pedro J. del Nido,Robert D. Howe
#t2012
#cMedical Image Analysis
#index3309656
#% 
#!
  
#*Real-time image-based rigid registration of three-dimensional ultrasound.
#@Robert J. Schneider,Douglas P. Perrin,Nikolay V. Vasilyev,Gerald R. Marx,Pedro J. del Nido,Robert D. Howe
#t2012
#cMedical Image Analysis
#index3309665
#% 
#!
  
#*Tumor invasion margin on the Riemannian space of brain fibers.
#@Parisa Mosayebi,Dana Cobzas,Albert Murtha,Martin Jägersand
#t2012
#cMedical Image Analysis
#index3309662
#% 
#!
  
#*Re-localisation of a biopsy site in endoscopic images and characterisation of its uncertainty.
#@Baptiste Allain,Mingxing Hu,Laurence B. Lovat,Richard J. Cook,Tom Vercauteren,Sébastien Ourselin,David J. Hawkes
#t2012
#cMedical Image Analysis
#index3309663
#% 
#!
  
#*Feature-based interpolation of diffusion tensor fields and application to human cardiac DT-MRI.
#@Feng Yang,Yue-Min Zhu,Isabelle E. Magnin,Jianhua Luo,Pierre Croisille,Peter B. Kingsley
#t2012
#cMedical Image Analysis
#index3309660
#% 
#!
  
#*Temporal diffeomorphic free-form deformation: Application to motion and strain estimation from 3D echocardiography.
#@Mathieu De Craene,Gemma Piella,Oscar Camara,Nicolas Duchateau,Etelvino Silva,Adelina Doltra,Jan D'hooge,Josep Brugada,Marta Sitges,Alejandro F. Frangi
#t2012
#cMedical Image Analysis
#index3309667
#% 
#!
  
#*Multiscale 3D shape representation and segmentation with applications to hippocampal/caudate extraction from brain MRI.
#@Yi Gao,Benjamin Corn,Dan Schifter,Allen Tannenbaum
#t2012
#cMedical Image Analysis
#index3309666
#% 
#!
  
#*Spatially variable Rician noise in magnetic resonance imaging.
#@Ivan I. Maximov,Ezequiel Farrher,Farida Grinberg,N. Jon Shah
#t2012
#cMedical Image Analysis
#index3309661
#% 
#!
  
#*Analysis of fMRI time series with mutual information.
#@Vanessa Gómez-Verdejo,Manel Martínez-Ramón,José Florensa-Vila,Antonio Oliviero
#t2012
#cMedical Image Analysis
#index3309658
#% 
#!
  
#*Biomechanically constrained groupwise ultrasound to CT registration of the lumbar spine.
#@Sean Gill,Purang Abolmaesumi,Gabor Fichtinger,Jonathan Boisvert,David R. Pichora,Dan Borshneck,Parvin Mousavi
#t2012
#cMedical Image Analysis
#index3359235
#% 
#!
  
#*A CANDLE for a deeper in vivo insight.
#@Pierrick Coupé,Martin Munz,José V. Manjón,Edward S. Ruthazer,D. Louis Collins
#t2012
#cMedical Image Analysis
#index3359230
#% 
#!
  
#*Manifold learning for image-based breathing gating in ultrasound and MRI.
#@Christian Wachinger,Mehmet Yigitsoy,Erik-Jan Rijkhorst,Nassir Navab
#t2012
#cMedical Image Analysis
#index3359237
#% 
#!
  
#*Nonparametric Bayesian inference of the fiber orientation distribution from diffusion-weighted MR images.
#@Enrico Kaden,Frithjof Kruggel
#t2012
#cMedical Image Analysis
#index3359216
#% 
#!
  
#*Gaze-Contingent Motor Channelling, haptic constraints and associated cognitive demand for robotic MIS.
#@George P. Mylonas,Ka-Wai Kwok,David R. C. James,Daniel Richard Leff,Felipe Orihuela-Espina,Ara Darzi,Guang-Zhong Yang
#t2012
#cMedical Image Analysis
#index3359215
#% 
#!
  
#*Statistical modeling and recognition of surgical workflow.
#@Nicolas Padoy,Tobias Blum,Seyed-Ahmad Ahmadi,Hubertus Feussner,Marie-Odile Berger,Nassir Navab
#t2012
#cMedical Image Analysis
#index3359227
#% 
#!
  
#*A fast analysis method for non-invasive imaging of blood flow in individual cerebral arteries using vessel-encoded arterial spin labelling angiography.
#@Michael A. Chappell,Thomas W. Okell,Stephen J. Payne,Peter Jezzard,Mark William Woolrich
#t2012
#cMedical Image Analysis
#index3359228
#% 
#!
  
#*3D segmentation of SBFSEM images of neuropil by a graphical model over supervoxel boundaries.
#@Björn Andres,Ullrich Köthe,Thorben Kröger,Moritz Helmstaedter,Kevin L. Briggman,Winfried Denk,Fred A. Hamprecht
#t2012
#cMedical Image Analysis
#index3359238
#% 
#!
  
#*Statistical 4D graphs for multi-organ abdominal segmentation from multiphase CT.
#@Marius George Linguraru,John A. Pura,Vivek Pamulapati,Ronald M. Summers
#t2012
#cMedical Image Analysis
#index3359214
#% 
#!
  
#*Image-based characterization of thrombus formation in time-lapse DIC microscopy.
#@Nicolas Brieu,Nassir Navab,Jovana Serbanovic-Canic,Willem Ouwehand,Derek L. Stemple,Ana Cvejic,Martin Groher
#t2012
#cMedical Image Analysis
#index3359225
#% 
#!
  
#*Context specific descriptors for tracking deforming tissue.
#@Peter Mountney,Guang-Zhong Yang
#t2012
#cMedical Image Analysis
#index3359221
#% 
#!
  
#*Brain tissue segmentation in MR images based on a hybrid of MRF and social algorithms.
#@Sahar Yousefi,Reza Azmi,Morteza Zahedi
#t2012
#cMedical Image Analysis
#index3359232
#% 
#!
  
#*MR to ultrasound registration for image-guided prostate interventions.
#@Yipeng Hu,Hashim Uddin Ahmed,Zeike A. Taylor,Clare Allen,Mark Emberton,David J. Hawkes,Dean C. Barratt
#t2012
#cMedical Image Analysis
#index3359226
#% 
#!
  
#*CranialVault and its CRAVE tools: A clinical computer assistance system for deep brain stimulation (DBS) therapy.
#@Pierre-François D'Haese,Srivatsan Pallavaram,Rui Li,Michael S. Remple,Chris Kao,Joseph S. Neimat,Peter E. Konrad,Benoit M. Dawant
#t2012
#cMedical Image Analysis
#index3359213
#% 
#!
  
#*Multi-modal registration of speckle-tracked freehand 3D ultrasound to CT in the lumbar spine.
#@Andrew Lang,Parvin Mousavi,Sean Gill,Gabor Fichtinger,Purang Abolmaesumi
#t2012
#cMedical Image Analysis
#index3359231
#% 
#!
  
#*A review of 3D/2D registration methods for image-guided interventions.
#@Primoz Markelj,Dejan Tomazevic,Bostjan Likar,Franjo Pernus
#t2012
#cMedical Image Analysis
#index3359222
#% 
#!
  
#*Prostate biopsy tracking with deformation estimation.
#@Michael Baumann,Pierre Mozer,Vincent Daanen,Jocelyne Troccaz
#t2012
#cMedical Image Analysis
#index3359212
#% 
#!
  
#*A probabilistic framework for image information fusion with an application to mammographic analysis.
#@Marina Velikova,Peter J. F. Lucas,Maurice Samulski,Nico Karssemeijer
#t2012
#cMedical Image Analysis
#index3359219
#% 
#!
  
#*Intra-operative 3D guidance and edema detection in prostate brachytherapy using a non-isocentric C-arm.
#@Ameet K. Jain,Anton Deguet,Iulian Iordachita,Gouthami Chintalapani,Siddharth Vikal,J. Blevins,Y. Le,E. Armour,C. Burdette,Danny Y. Song,Gabor Fichtinger
#t2012
#cMedical Image Analysis
#index3359223
#% 
#!
  
#*Fast virtual deployment of self-expandable stents: Method and in vitro evaluation for intracranial aneurysmal stenting.
#@Ignacio Larrabide,Minsuok Kim,Luca Augsburger,Maria-Cruz Villa-Uriol,Daniel A. Rüfenacht,Alejandro F. Frangi
#t2012
#cMedical Image Analysis
#index3359234
#% 
#!
  
#*An integrated diagnosis and therapeutic system using intra-operative 5-aminolevulinic-acid-induced fluorescence guided robotic laser ablation for precision neurosurgery.
#@Hongen Liao,Masafumi Noguchi,Takashi Maruyama,Yoshihiro Muragaki,Etsuko Kobayashi,Hiroshi Iseki,Ichiro Sakuma
#t2012
#cMedical Image Analysis
#index3359220
#% 
#!
  
#*Reconstruction of a 3D surface from video that is robust to missing data and outliers: Application to minimally invasive surgery using stereo and mono endoscopes.
#@Mingxing Hu,Graeme P. Penney,Michael Figl,Philip J. Edwards,Fernando Bello,Roberto Casula,Daniel Rueckert,David J. Hawkes
#t2012
#cMedical Image Analysis
#index3359233
#% 
#!
  
#*Development and comparison of new hybrid motion tracking for bronchoscopic navigation.
#@Xióngbiao Luó,Marco Feuerstein,Daisuke Deguchi,Takayuki Kitasaka,Hirotsugu Takabatake,Kensaku Mori
#t2012
#cMedical Image Analysis
#index3359224
#% 
#!
  
#*Computer assisted reconstruction of complex proximal humerus fractures for preoperative planning.
#@Philipp Fürnstahl,Gábor Székely,Christian Gerber,Jürg Hodler,Jess Gerrit Snedeker,Matthias Harders
#t2012
#cMedical Image Analysis
#index3359218
#% 
#!
  
#*Nonlinear dimensionality reduction combining MR imaging with non-imaging information.
#@Robin Wolz,Paul Aljabar,Joseph V. Hajnal,Jyrki Lötjönen,Daniel Rueckert
#t2012
#cMedical Image Analysis
#index3359236
#% 
#!
  
#*Cardiac MR perfusion image processing techniques: A survey.
#@Vikas Gupta,Hortense A. Kirisli,Emile A. Hendriks,Rob J. van der Geest,Martijn van de Giessen,Wiro J. Niessen,Johan H. C. Reiber,Boudewijn P. F. Lelieveldt
#t2012
#cMedical Image Analysis
#index3359229
#% 
#!
  
#*Mass preserving image registration for lung CT.
#@Vladlena Gorbunova,Jon Sporring,Pechin Lo,Martine Loeve,Harm A. Tiddens,Mads Nielsen,Asger Dirksen,Marleen de Bruijne
#t2012
#cMedical Image Analysis
#index3359211
#% 
#!
  
#*Automated landmarking and geometric characterization of the carotid siphon.
#@Hrvoje Bogunovic,José María Pozo,Rubén Cárdenes,Maria-Cruz Villa-Uriol,Raphaël Blanc,Michel Piotin,Alejandro F. Frangi
#t2012
#cMedical Image Analysis
#index3359217
#% 
#!
  
#*Generalized pixel profiling and comparative segmentation with application to arteriovenous malformation segmentation.
#@D. Babin,Aleksandra Pizurica,Rik Bellens,Johan de Bock,Y. Shang,Bart Goossens,Ewout Vansteenkiste,Wilfried Philips
#t2012
#cMedical Image Analysis
#index3453948
#% 
#!
  
#*A multiple-instance learning framework for diabetic retinopathy screening.
#@Gwénolé Quellec,Mathieu Lamard,Michael D. Abràmoff,Etienne Decencière,Bruno Lay,Ali Erginay,Béatrice Cochener,Guy Cazuguel
#t2012
#cMedical Image Analysis
#index3453920
#% 
#!
  
#*Automatic motion compensation of free breathing acquired myocardial perfusion data by using independent component analysis.
#@Gert Wollny,Peter Kellman,Andrés Santos,María J. Ledesma-Carbayo
#t2012
#cMedical Image Analysis
#index3453941
#% 
#!
  
#*Symmetric positive semi-definite Cartesian Tensor fiber orientation distributions (CT-FOD).
#@Yonas T. Weldeselassie,Angelos Barmpoutis,M. Stella Atkins
#t2012
#cMedical Image Analysis
#index3453942
#% 
#!
  
#*Tissue metabolism driven arterial tree generation.
#@Matthias Schneider,Johannes Reichold,Bruno Weber,Gábor Székely,Sven Hirsch
#t2012
#cMedical Image Analysis
#index3453926
#% 
#!
  
#*The 2D analytic signal for envelope detection and feature extraction on ultrasound images.
#@Christian Wachinger,Tassilo Klein,Nassir Navab
#t2012
#cMedical Image Analysis
#index3453934
#% 
#!
  
#*Complete valvular heart apparatus model from 4D cardiac CT.
#@Sasa Grbic,Razvan Ioan Ionasec,Dime Vitanovski,Ingmar Voigt,Yang Wang,Bogdan Georgescu,Nassir Navab,Dorin Comaniciu
#t2012
#cMedical Image Analysis
#index3453919
#% 
#!
  
#*An endoscopic 3D scanner based on structured light.
#@Christoph Schmalz,Frank Forster,Anton Schick,Elli Angelopoulou
#t2012
#cMedical Image Analysis
#index3453947
#% 
#!
  
#*A novel deformation method for fast simulation of biological tissue formed by fibers and fluid.
#@Ivan F. Costa
#t2012
#cMedical Image Analysis
#index3453914
#% 
#!
  
#*An integrated framework for finite-element modeling of mitral valve biomechanics from medical images: Application to MitralClip intervention planning.
#@Tommaso Mansi,Ingmar Voigt,Bogdan Georgescu,Xudong Zheng,Etienne Assoumou Mengue,Michael Hackl,Razvan Ioan Ionasec,Thilo Noack,Joerg Seeburger,Dorin Comaniciu
#t2012
#cMedical Image Analysis
#index3453935
#% 
#!
  
#*Imaging the femoral cortex: Thickness, density and mass from clinical CT.
#@Graham M. Treece,K. E. S. Poole,Andrew H. Gee
#t2012
#cMedical Image Analysis
#index3453923
#% 
#!
  
#*Strategies for improved interpretation of computer-aided detections for CT colonography utilizing distributed human intelligence.
#@Matthew McKenna,Shijun Wang,Tan Nguyen,Joseph E. Burns,Nicholas Petrick,Ronald M. Summers
#t2012
#cMedical Image Analysis
#index3453946
#% 
#!
  
#*Machine learning and radiology.
#@Shijun Wang,Ronald M. Summers
#t2012
#cMedical Image Analysis
#index3453921
#% 
#!
  
#*Detecting outliers in high-dimensional neuroimaging datasets with robust covariance estimators.
#@Virgile Fritsch,Gaël Varoquaux,Benjamin Thyreau,Jean-Baptiste Poline,Bertrand Thirion
#t2012
#cMedical Image Analysis
#index3453954
#% 
#!
  
#*Concurrent bias correction in hemodynamic data assimilation.
#@Zhenghui Hu,Huafeng Liu,Pengcheng Shi
#t2012
#cMedical Image Analysis
#index3453953
#% 
#!
  
#*Refraction-compensated motion tracking of unrestrained small animals in positron emission tomography.
#@Andre Kyme,Steven R. Meikle,Clive Baldock,Roger R. Fulton
#t2012
#cMedical Image Analysis
#index3453930
#% 
#!
  
#*Segmentation and quantification of the aortic arch using joint 3D model-based segmentation and elastic image registration.
#@Andreas Biesdorf,Karl Rohr,Duan Feng,Hendrik von Tengg-Kobligk,Fabian Rengier,Dittmar Böckler,Hans-Ulrich Kauczor,Stefan Wörz
#t2012
#cMedical Image Analysis
#index3453939
#% 
#!
  
#*A spline-based non-linear diffeomorphism for multimodal prostate registration.
#@Jhimli Mitra,Zoltan Kato,Robert Marti,Arnau Oliver,Xavier Lladó,Desire Sidibé,Soumya Ghose,Joan Carles Vilanova,Josep Comet,Fabrice Meriaudeau
#t2012
#cMedical Image Analysis
#index3453952
#% 
#!
  
#*A 3D interactive multi-object segmentation tool using local robust statistics driven active contours.
#@Yi Gao,Ron Kikinis,Sylvain Bouix,Martha Elizabeth Shenton,Allen Tannenbaum
#t2012
#cMedical Image Analysis
#index3453929
#% 
#!
  
#*Mammography segmentation with maximum likelihood active contours.
#@Peyman Rahmati,Andy Adler,Ghassan Hamarneh
#t2012
#cMedical Image Analysis
#index3453940
#% 
#!
  
#*Ultrasound confidence maps using random walks.
#@Athanasios Karamalis,Wolfgang Wein,Tassilo Klein,Nassir Navab
#t2012
#cMedical Image Analysis
#index3453937
#% 
#!
  
#*Position-orientation adaptive smoothing of diffusion weighted magnetic resonance data (POAS).
#@S. M. A. Becker,Karsten Tabelow,Henning U. Voss,Alfred Anwander,Robin M. Heidemann,Jörg Polzehl
#t2012
#cMedical Image Analysis
#index3453922
#% 
#!
  
#*Endoscopic image analysis in semantic space.
#@Roland Kwitt,Nuno Vasconcelos,Nikhil Rasiwasia,Andreas Uhl,Bradley C. Davis,Michael Häfner,Friedrich Wrba
#t2012
#cMedical Image Analysis
#index3453924
#% 
#!
  
#*Ultrasound-fluoroscopy registration for prostate brachytherapy dosimetry.
#@Ehsan Dehghan,Junghoon Lee,Pascal Fallavollita,Nathanael Kuo,Anton Deguet,Yi Le,Everette Clif Burdette,Danny Y. Song,Jerry L. Prince,Gabor Fichtinger
#t2012
#cMedical Image Analysis
#index3453915
#% 
#!
  
#*Editorial for the MEDIA Special Issue on MICCAI 2011.
#@Gabor Fichtinger,Anne L. Martel,Terry M. Peters
#t2012
#cMedical Image Analysis
#index3453951
#% 
#!
  
#*Structural analysis of fMRI data: A surface-based framework for multi-subject studies.
#@Grégory Operto,Denis Rivière,Bernard Fertil,Rémy Bulot,Jean-François Mangin,Olivier Coulon
#t2012
#cMedical Image Analysis
#index3453932
#% 
#!
  
#*Surface-based multi-template automated hippocampal segmentation: Application to temporal lobe epilepsy.
#@Hosung Kim,Tommaso Mansi,Neda Bernasconi,Andrea Bernasconi
#t2012
#cMedical Image Analysis
#index3453945
#% 
#!
  
#*Deformable segmentation via sparse representation and dictionary learning.
#@Shaoting Zhang,Yiqiang Zhan,Dimitris N. Metaxas
#t2012
#cMedical Image Analysis
#index3453916
#% 
#!
  
#*MRI to X-ray mammography registration using a volume-preserving affine transformation.
#@Thomy Mertzanidou,John H. Hipwell,Manuel Jorge Cardoso,Xiying Zhang,Christine Tanner,Sébastien Ourselin,Ulrich Bick,Henkjan J. Huisman,Nico Karssemeijer,David J. Hawkes
#t2012
#cMedical Image Analysis
#index3453912
#% 
#!
  
#*Diffusion MRI signal reconstruction with continuity constraint and optimal regularization.
#@Emmanuel Caruyer,Rachid Deriche
#t2012
#cMedical Image Analysis
#index3453927
#% 
#!
  
#*MIND: Modality independent neighbourhood descriptor for multi-modal deformable registration.
#@Mattias P. Heinrich,Mark Jenkinson,Manav Bhushan,Tahreema N. Matin,Fergus Gleeson,Michael Brady,Julia A. Schnabel
#t2012
#cMedical Image Analysis
#index3453931
#% 
#!
  
#*Efficient globally optimal segmentation of cells in fluorescence microscopy images using level sets and convex energy functionals.
#@Jan-Philip Bergeest,Karl Rohr
#t2012
#cMedical Image Analysis
#index3453938
#% 
#!
  
#*HoliMAb: A holistic approach for Media-Adventitia border detection in intravascular ultrasound.
#@Francesco Ciompi,Oriol Pujol,Carlo Gatta,Marina Alberti,Simone Balocco,Xavier Carrillo,Josepa Mauri-Ferre,Petia Radeva
#t2012
#cMedical Image Analysis
#index3453917
#% 
#!
  
#*Semiautomatic carotid lumen segmentation for quantification of lumen geometry in multispectral MRI.
#@Hui Tang,Theo van Walsum,Robbert S. van Onkelen,Reinhard Hameeteman,Stefan Klein,Michiel Schaap,Fufa L. Tori,Quirijn J. A. van den Bouwhuijsen,Jacqueline C. M. Witteman,Aad van der Lugt,Lucas J. van Vliet,Wiro J. Niessen
#t2012
#cMedical Image Analysis
#index3453913
#% 
#!
  
#*Understanding the phase contrast optics to restore artifact-free microscopy images for segmentation.
#@Zhaozheng Yin,Takeo Kanade,Mei Chen
#t2012
#cMedical Image Analysis
#index3453918
#% 
#!
  
#*Statistical model based shape prediction from a combination of direct observations and various surrogates: Application to orthopaedic research.
#@Rémi Blanc,Christof Seiler,Gábor Székely,Lutz-Peter Nolte,Mauricio Reyes
#t2012
#cMedical Image Analysis
#index3453944
#% 
#!
  
#*Vectorization of optically sectioned brain microvasculature: Learning aids completion of vascular graphs by connecting gaps and deleting open-ended segments.
#@John P. Kaufhold,Philbert Tsai,Pablo Blinder,David Kleinfeld
#t2012
#cMedical Image Analysis
#index3453928
#% 
#!
  
#*4D CT image reconstruction with diffeomorphic motion model.
#@Jacob Hinkle,Martin Szegedi,Brian Wang,Bill Salter,Sarang C. Joshi
#t2012
#cMedical Image Analysis
#index3453950
#% 
#!
  
#*A finite-element approach to the direct computation of relative cardiovascular pressure from time-resolved MR velocity data.
#@Sebastian Krittian,Pablo Lamata,Christian Michler,David Nordsletten,Jelena Bock,Chris P. Bradley,Alex Pitcher,Philip J. Kilner,Michael Markl,Nicolas Smith
#t2012
#cMedical Image Analysis
#index3453933
#% 
#!
  
#*Capturing the multiscale anatomical shape variability with polyaffine transformation trees.
#@Christof Seiler,Xavier Pennec,Mauricio Reyes
#t2012
#cMedical Image Analysis
#index3453949
#% 
#!
  
#*Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions.
#@Benoit Scherrer,Ali Gholipour,Simon K. Warfield
#t2012
#cMedical Image Analysis
#index3453925
#% 
#!
  
#*An atlas-based geometry pipeline for cardiac Hermite model construction and diffusion tensor reorientation.
#@Yongjie Zhang,Xinghua Liang,Jun Ma,Yiming Jing,Matthew J. Gonzales,Christopher Villongco,Adarsh Krishnamurthy,Lawrence R. Frank,Vishal Nigam,Paul Stark,Sanjiv M. Narayan,Andrew D. McCulloch
#t2012
#cMedical Image Analysis
#index3453936
#% 
#!
  
#*Robust 3-D reconstruction of surfaces from image focus by local cross-sectional multivariate statistical analyses: Application to human ex vivo corneal endotheliums.
#@Mathieu Fernandes,Yann Gavet,Jean-Charles Pinoli
#t2012
#cMedical Image Analysis
#index3453943
#% 
#!
  
#*Graph separators with applications.
#@Arnold L. Rosenberg,Lenwood S. Heath
#t2001
#cFrontiers of computer science
#index3004347
#% 
#!
  
#*Parallel evolution of parallel processors.
#@Gil Lerman,Larry Rudolph
#t1993
#cFrontiers of computer science
#index3006450
#% 
#!
  
#*Matching dependencies: semantics and query answering.
#@Jaffer Gardezi,Leopoldo E. Bertossi,Iluju Kiringa
#t2012
#cFrontiers of computer science
#index3378237
#% 
#!
  
#*Multi-stream join answering for mining significant cross-stream correlations.
#@Robert Gwadera
#t2012
#cFrontiers of computer science
#index3378244
#% 
#!
  
#*Tractable XML data exchange via relations.
#@Rada Chirkova,Leonid Libkin,Juan L. Reutter
#t2012
#cFrontiers of computer science
#index3378243
#%1118156
#%176754
#%2793759
#%1212957
#%1137986
#%951984
#%1138018
#%1227387
#%600179
#%145244
#%2810688
#%1091016
#%1118334
#%642621
#%821774
#%1113992
#%1138143
#%545232
#%300453
#%643083
#%1214198
#%1065347
#%643529
#%643730
#%599797
#%599499
#%600020
#!
  
#*An approach for automatic sleep stage scoring and apnea-hypopnea detection.
#@Tim Schlüter,Stefan Conrad
#t2012
#cFrontiers of computer science
#index3378238
#% 
#!
  
#*Two of a kind or the ratings game? Adaptive pairwise preferences and latent factor models.
#@Suhrid Balakrishnan,Sumit Chopra
#t2012
#cFrontiers of computer science
#index3378235
#% 
#!
  
#*Stratified sampling for data mining on the deep web.
#@Tantan Liu,Fan Wang,Gagan Agrawal
#t2012
#cFrontiers of computer science
#index3378246
#% 
#!
  
#*An effective framework for characterizing rare categories.
#@Jingrui He,Hanghang Tong,Jaime G. Carbonell
#t2012
#cFrontiers of computer science
#index3378236
#% 
#!
  
#*Active improvement of hierarchical object features under budget constraints.
#@Nicolas Cebron
#t2012
#cFrontiers of computer science
#index3378240
#% 
#!
  
#*Managing advertising campaigns - an approximate planning approach.
#@Sertan Girgin,Jérémie Mary,Philippe Preux,Olivier Nicol
#t2012
#cFrontiers of computer science
#index3378245
#% 
#!
  
#*Resilient -d trees: -means in space revisited.
#@Fabian Gieseke,Gabriel Moruz,Jan Vahrenhold
#t2012
#cFrontiers of computer science
#index3378241
#% 
#!
  
#*Adding regular expressions to graph reachability and pattern queries.
#@Wenfei Fan,Jianzhong Li,Shuai Ma,Nan Tang,Yinghui Wu
#t2012
#cFrontiers of computer science
#index3378239
#% 
#!
  
#*Composite recommendations: from items to packages.
#@Min Xie,Laks V. S. Lakshmanan,Peter T. Wood
#t2012
#cFrontiers of computer science
#index3378247
#% 
#!
  
#*Linking temporal records.
#@Pei Li,Xin Luna Dong,Andrea Maurino,Divesh Srivastava
#t2012
#cFrontiers of computer science
#index3378242
#% 
#!
  
#*A probabilistic model with multi-dimensional features for object extraction.
#@Jing Wang,Zhijing Liu,Hui Zhao
#t2012
#cFrontiers of computer science
#index3466229
#% 
#!
  
#*An efficient approach for continuous density queries.
#@Jie Wen,Xiaofeng Meng,Xing Hao,Jianliang Xu
#t2012
#cFrontiers of computer science
#index3466230
#% 
#!
  
#*Measure oriented training: a targeted approach to imbalanced classification problems.
#@Bo Yuan,Wenhuang Liu
#t2012
#cFrontiers of computer science
#index3466239
#% 
#!
  
#*Social influence and spread dynamics in social networks.
#@Xiaolong Zheng,Yongguang Zhong,Daniel Zeng,Fei-Yue Wang
#t2012
#cFrontiers of computer science
#index3466221
#% 
#!
  
#*A group priority earliest deadline first scheduling algorithm.
#@Qi Li,Wei Ba
#t2012
#cFrontiers of computer science
#index3466231
#% 
#!
  
#*Fostering artificial societies using social learning and social control in parallel emergency management systems.
#@Wei Duan,Xiao-Gang Qiu
#t2012
#cFrontiers of computer science
#index3466238
#% 
#!
  
#*A qualitative and quantitative study of color emotion using valence-arousal.
#@Shangfei Wang,Rui Ding
#t2012
#cFrontiers of computer science
#index3466220
#% 
#!
  
#*Rethinking the architecture design of data center networks.
#@Kaishun Wu,Jiang Xiao,Lionel M. Ni
#t2012
#cFrontiers of computer science
#index3466217
#% 
#!
  
#*The ClasSi coefficient for the evaluation of ranking quality in the presence of class similarities.
#@Anca Maria Ivanescu,Marc Wichterich,Christian Beecks,Thomas Seidl
#t2012
#cFrontiers of computer science
#index3466232
#% 
#!
  
#*Towards architecture-based management of platforms in the cloud.
#@Gang Huang,Xing Chen,Ying Zhang,Xiaodong Zhang
#t2012
#cFrontiers of computer science
#index3466241
#% 
#!
  
#*Automatic object classification using motion blob based local feature fusion for traffic scene surveillance.
#@Zhaoxiang Zhang,Yunhong Wang
#t2012
#cFrontiers of computer science
#index3466219
#% 
#!
  
#*Dynamic cache partitioning based on hot page migration.
#@Xiaolin Wang,Xiang Wen,Yechen Li,Zhenlin Wang,Yingwei Luo,Xiaoming Li
#t2012
#cFrontiers of computer science
#index3466240
#% 
#!
  
#*A uniform solution to the independent set problem through tissue P systems with cell separation.
#@Xingyi Zhang,Xiangxiang Zeng,Bin Luo,Zheng Zhang
#t2012
#cFrontiers of computer science
#index3466233
#% 
#!
  
#*A precise approach to tracking dim-small targets using spectral fingerprint features.
#@Hao Sheng,Chao Li,Yuanxin Ouyang,Zhang Xiong
#t2012
#cFrontiers of computer science
#index3466218
#% 
#!
  
#*Bus holding strategy based on shuffled complex evolution method.
#@Yu Jiang,Shuli Gong
#t2012
#cFrontiers of computer science
#index3466236
#% 
#!
  
#*Efficient ID-based proxy multi-signature scheme secure in random oracle.
#@Rajeev Anand Sahu,Sahadeo Padhye
#t2012
#cFrontiers of computer science
#index3466225
#% 
#!
  
#*How much power is needed for a billion-thread high-throughput server?
#@Zhiwei Xu
#t2012
#cFrontiers of computer science
#index3466227
#% 
#!
  
#*Classification-based self-adaptive differential evolution and its application in multi-lateral multi-issue negotiation.
#@Xiaojun Bi,Jing Xiao
#t2012
#cFrontiers of computer science
#index3466226
#% 
#!
  
#*Effectively deploying services on virtualization infrastructure.
#@Wei Gao,Hai Jin,Song Wu,Xuanhua Shi,Jinyan Yuan
#t2012
#cFrontiers of computer science
#index3466224
#% 
#!
  
#*Energy-aware application performance management in virtualized data centers.
#@Hui Chen,Ping Lu,Pengcheng Xiong,Cheng-Zhong Xu,Zhiping Wang
#t2012
#cFrontiers of computer science
#index3466234
#% 
#!
  
#*Improving bagging performance through multi-algorithm ensembles.
#@Kuo-Wei Hsu,Jaideep Srivastava
#t2012
#cFrontiers of computer science
#index3466223
#%1038389
#%1009242
#%1009234
#%491015
#%1031197
#%527681
#%2809352
#%1009566
#%491089
#%340628
#%1306483
#%1264722
#%389760
#%473609
#%1063711
#%2360
#%1033562
#%1009890
#%335717
#%15871
#%335845
#%274057
#%96181
#%1003702
#!
  
#*CloudRank-D: benchmarking and ranking cloud computing systems for data processing applications.
#@Chunjie Luo,Jianfeng Zhan,Zhen Jia,Lei Wang,Gang Lu,Lixin Zhang,Cheng-Zhong Xu,Ninghui Sun
#t2012
#cFrontiers of computer science
#index3466228
#% 
#!
  
#*An efficient MAC scheme for secure network coding with probabilistic detection.
#@Boyang Wang,Hui Li,Jin Cao
#t2012
#cFrontiers of computer science
#index3466237
#% 
#!
  
#*A co-evolving memetic wrapper for prediction of patient outcomes in TCM informatics.
#@Dion Detterer,Paul Kwan,Cedric Gondro
#t2012
#cFrontiers of computer science
#index3466235
#% 
#!
  
#*An efficient method for privacy preserving location queries.
#@Yubao Liu,Xiuwei Chen,Zhan Li,Zhijie Li,Raymond Chi-Wing Wong
#t2012
#cFrontiers of computer science
#index3466242
#% 
#!
  
#*Real-time urban traffic information estimation with a limited number of surveillance cameras.
#@Guangtao Xue,Ke Zhang,Qi He,Hongzi Zhu
#t2012
#cFrontiers of computer science
#index3466222
#% 
#!
  
#*Consolidated cluster systems for data centers in the cloud age: a survey and analysis.
#@Jian Lin,Li Zha,Zhiwei Xu
#t2013
#cFrontiers of computer science
#index3650654
#% 
#!
  
#*A graph-based generic type system for object-oriented programs.
#@Wei Ke,Zhiming Liu,Shuling Wang,Liang Zhao
#t2013
#cFrontiers of computer science
#index3650658
#% 
#!
  
#*Geometric attack resistant image watermarking based on MSER.
#@Xuejuan Zhang,Xiaochun Cao,Jingjie Li
#t2013
#cFrontiers of computer science
#index3650653
#% 
#!
  
#*Evaluation of RDF queries via equivalence.
#@Weiwei Ni,Zhihong Chong,Hu Shu,Jiajia Bao,Aoying Zhou
#t2013
#cFrontiers of computer science
#index3650657
#% 
#!
  
#*A novel unsupervised approach for multilevel image clustering from unordered image collection.
#@Lai Kang,Lingda Wu,Yee-Hong Yang
#t2013
#cFrontiers of computer science
#index3650652
#% 
#!
  
#*Hybrid MARTE statecharts.
#@Jing Liu,Ziwei Liu,Jifeng He,Frédéric Mallet,Zuohua Ding
#t2013
#cFrontiers of computer science
#index3650656
#% 
#!
  
#*Noisy component extraction with reference.
#@Yongjian Zhao,Hong He,Jianxun Mi
#t2013
#cFrontiers of computer science
#index3650651
#% 
#!
  
#*Semantic separator learning and its applications in unsupervised Chinese text parsing.
#@Yuming Wu,Xiaodong Luo,Zhen Yang
#t2013
#cFrontiers of computer science
#index3650650
#% 
#!
  
#*A general framework for computing maximal contractions.
#@Jie Luo
#t2013
#cFrontiers of computer science
#index3650649
#% 
#!
  
#*Design and verification of a lightweight reliable virtual machine monitor for a many-core architecture.
#@Yue-hua Dai,Yi Shi,Yong Qi,Jianbao Ren,Peijian Wang
#t2013
#cFrontiers of computer science
#index3650659
#% 
#!
  
#*VGQ-Vor: extending virtual grid quadtree with Voronoi diagram for mobile k nearest neighbor queries over mobile objects.
#@Botao Wang,Jingwei Qu,Xiaosong Wang,Guoren Wang,Masaru Kitsuregawa
#t2013
#cFrontiers of computer science
#index3650655
#% 
#!
  
